Citrus Sinensis ID: 021103
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQK0 | 399 | Developmentally regulated | yes | no | 0.977 | 0.776 | 0.925 | 1e-172 | |
| Q9CAI1 | 399 | Developmentally regulated | yes | no | 0.981 | 0.779 | 0.919 | 1e-172 | |
| P55039 | 364 | Developmentally-regulated | yes | no | 0.974 | 0.848 | 0.686 | 1e-124 | |
| Q9QXB9 | 364 | Developmentally-regulated | yes | no | 0.974 | 0.848 | 0.686 | 1e-124 | |
| Q58D56 | 364 | Developmentally-regulated | yes | no | 0.974 | 0.848 | 0.689 | 1e-121 | |
| P34280 | 366 | Uncharacterized GTP-bindi | yes | no | 0.955 | 0.827 | 0.663 | 1e-120 | |
| Q54WT4 | 364 | Developmentally-regulated | yes | no | 0.974 | 0.848 | 0.634 | 1e-117 | |
| P32235 | 364 | GTP-binding protein 1 OS= | yes | no | 0.971 | 0.846 | 0.611 | 1e-114 | |
| Q54HP3 | 370 | Developmentally-regulated | no | no | 0.974 | 0.835 | 0.600 | 2e-99 | |
| P32233 | 367 | Developmentally-regulated | no | no | 0.971 | 0.839 | 0.572 | 4e-99 |
| >sp|Q9LQK0|DRG1_ARATH Developmentally regulated G-protein 1 OS=Arabidopsis thaliana GN=DRG1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 605 bits (1559), Expect = e-172, Method: Compositional matrix adjust.
Identities = 287/310 (92%), Positives = 304/310 (98%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGIIE+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKG+SG GEGFEVTK+
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNK PPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKTPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLTH+DEKLCYQILHEYKIHNAEVLFRE+ATVDD IDVIEGNRKY+K
Sbjct: 181 KKKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD+L+RQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDF EP VLS
Sbjct: 301 PDFDEPFVLS 310
|
Binds GDP and GTP, and has low GTPase activity. May interact with phosphatidic acid (PA). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAI1|DRG2_ARATH Developmentally regulated G-protein 2 OS=Arabidopsis thaliana GN=DRG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 604 bits (1557), Expect = e-172, Method: Compositional matrix adjust.
Identities = 286/311 (91%), Positives = 303/311 (97%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSG G+GFEVTK+
Sbjct: 1 MGIVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLT +DEKLCYQILHEYKIHNAEVLFREDATVDD IDV+EGNRKY+K
Sbjct: 181 KKKTGGISFNTTTPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVVEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD+LARQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQ QQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQSQQ 300
Query: 301 PDFTEPVVLSV 311
PDF EP VLS
Sbjct: 301 PDFDEPFVLSA 311
|
Binds GDP and GTP, and has low GTPase activity. Arabidopsis thaliana (taxid: 3702) |
| >sp|P55039|DRG2_HUMAN Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens GN=DRG2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 444 bits (1142), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/309 (68%), Positives = 252/309 (81%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+EKI EIE E+ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKST L+L+T T SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+++M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKID I +++VD+LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
May play a role in cell proliferation, differentiation and death. Homo sapiens (taxid: 9606) |
| >sp|Q9QXB9|DRG2_MOUSE Developmentally-regulated GTP-binding protein 2 OS=Mus musculus GN=Drg2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 443 bits (1140), Expect = e-124, Method: Compositional matrix adjust.
Identities = 212/309 (68%), Positives = 252/309 (81%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+EKI EIE E+ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKST L+L+T T SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++G+GRGRQVIAV++++D+V+M+LDA+K + R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGRGRGRQVIAVARTADVVVMMLDATKGDVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + DD IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFIDVIVGNRVYMP 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKID I +++VD+LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
May play a role in cell proliferation, differentiation and death. Mus musculus (taxid: 10090) |
| >sp|Q58D56|DRG2_BOVIN Developmentally-regulated GTP-binding protein 2 OS=Bos taurus GN=DRG2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 435 bits (1119), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/309 (68%), Positives = 252/309 (81%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+EKI EIE E+ARTQKNKATEYHLG LKAK+AK R QLLEP K SS GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSSSSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKST L+L+T T SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+V+M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVVIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKID I +++VD+LAR+P+SVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPDSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
May play a role in cell proliferation, differentiation and death. Bos taurus (taxid: 9913) |
| >sp|P34280|YKK3_CAEEL Uncharacterized GTP-binding protein C02F5.3 OS=Caenorhabditis elegans GN=C02F5.3 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 201/303 (66%), Positives = 246/303 (81%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+EKI EIE E++RTQKNKATEYHLG LKAK+AK R QLLEP GEGF+V K
Sbjct: 1 MGILEKIAEIEHEISRTQKNKATEYHLGLLKAKLAKYRQQLLEPTGKGGAKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVA++GFPSVGKSTLL+ +T THSEAA YEFTTLTCIPG+I YN IQLLDLPGII
Sbjct: 61 GDARVAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGAS+GKGRGRQVI+V+K++D++LM+LDA KS+ + +L +ELEAVG+RLNK+PP IY K
Sbjct: 121 EGASQGKGRGRQVISVAKTADLILMMLDAGKSDQQKMLLERELEAVGIRLNKKPPNIYVK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
+KK GG+ F +T+PLTH +EKL +LHEYKI NA+V+FRED TVD+ IDVI+GNR YM
Sbjct: 181 QKKVGGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFIDVIQGNRVYMT 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK+D I I+++D+LAR P+ VVISC + LN+D LL +MWE + LVRVYTK G
Sbjct: 241 CLYVYNKVDQISIEEIDRLARMPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTKKPGNA 300
Query: 301 PDF 303
PD
Sbjct: 301 PDL 303
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q54WT4|DRG2_DICDI Developmentally-regulated GTP-binding protein 2 homolog OS=Dictyostelium discoideum GN=drg2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 421 bits (1081), Expect = e-117, Method: Compositional matrix adjust.
Identities = 196/309 (63%), Positives = 252/309 (81%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+EKIK+IEAEM+RTQKNKATEYHLG LKAK+A+LR QLL+PPK S G+GFEV K
Sbjct: 1 MGILEKIKDIEAEMSRTQKNKATEYHLGLLKAKLARLRQQLLDPPKSSGKGGDGFEVLKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKST+LT LT T S AA+YEFTTLTCIPG+I + +IQLLD PGII
Sbjct: 61 GDARVALIGFPSVGKSTILTKLTETKSLAAAYEFTTLTCIPGVIQHKGARIQLLDTPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGAS+G+GRGRQVIAV++++D++LM+LDA+K E +++L +ELE++G+RLN +PP IYFK
Sbjct: 121 EGASQGRGRGRQVIAVARTADLILMMLDANKGEIQKRLLQEELESIGIRLNSQPPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
K GG++ +T LT + EKL ILHEYKI N +++ R D TVD+LID IEG R Y++
Sbjct: 181 LKSAGGVNLTATQTLTKITEKLAKSILHEYKIFNCDLVIRCDPTVDELIDAIEGRRSYIR 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK+D + ++DVD+L+RQPNSVVISCN+ LNLD LL ++W+ + LVRVYTK +G
Sbjct: 241 CLYVYNKMDHMSMEDVDRLSRQPNSVVISCNMNLNLDFLLDKIWDYLNLVRVYTKLRGAS 300
Query: 301 PDFTEPVVL 309
PDF + ++L
Sbjct: 301 PDFNDAIIL 309
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P32235|GTP1_SCHPO GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtp1 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 412 bits (1060), Expect = e-114, Method: Compositional matrix adjust.
Identities = 189/309 (61%), Positives = 246/309 (79%), Gaps = 1/309 (0%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG++EKI+EIEAEM RTQKNKATEYHLG LK K+AKLR QLLEP S GEGF+V K
Sbjct: 1 MGVLEKIQEIEAEMRRTQKNKATEYHLGLLKGKLAKLRAQLLEPTSKSGPKGEGFDVLKS 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVA IGFPSVGKSTLL+ +T T S ASYEFTTLT IPG++ Y+ +IQ+LDLPGII
Sbjct: 61 GDARVAFIGFPSVGKSTLLSAITKTKSATASYEFTTLTAIPGVLEYDGAEIQMLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGAS+G+G GRQ ++ ++++D++LMVLDA+K+ R+ + ELE VG+RLN++PP +
Sbjct: 121 EGASQGRG-GRQAVSAARTADLILMVLDATKAADQREKIEYELEQVGIRLNRQPPNVTLT 179
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGI FN T+PLTH+D K+ Y ILHEY+IHNA++L RED TVDD ID++ GNR+Y+
Sbjct: 180 IKKNGGIKFNHTVPLTHMDYKMAYNILHEYRIHNADILIREDITVDDFIDLVMGNRRYIN 239
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+Y Y+KID + +++VD+LAR P SVVISCN+KLNLD L R+WEE+ L R+YTK +G+
Sbjct: 240 CLYCYSKIDAVSLEEVDRLARLPKSVVISCNMKLNLDFLKERIWEELNLYRIYTKRKGEM 299
Query: 301 PDFTEPVVL 309
PDF+E +++
Sbjct: 300 PDFSEALIV 308
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein 1 homolog OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 362 bits (930), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/313 (60%), Positives = 242/313 (77%), Gaps = 4/313 (1%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPK--GSSGAGEGFEVT 58
M +++KIKE+E EMARTQKNKAT +HLG LKAK+AK + +LL P ++GAGEGF+V+
Sbjct: 1 MSLVQKIKEVEDEMARTQKNKATSFHLGVLKAKLAKYKRELLLGPSKGAAAGAGEGFDVS 60
Query: 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
K G RV LIGFPSVGKSTLLT LTGT SE ASYEFTTLTCIPG+I+Y KIQLLDLPG
Sbjct: 61 KAGDARVGLIGFPSVGKSTLLTKLTGTSSEVASYEFTTLTCIPGVINYKGAKIQLLDLPG 120
Query: 119 IIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIY 178
IIEGA +GKGRGRQVIAV ++ +++L+VLDA K H++I+ +EL+ G+RLNK+PP I
Sbjct: 121 IIEGAKDGKGRGRQVIAVGRTCNLILIVLDAMKPLVHKKIIERELDGFGIRLNKQPPPIT 180
Query: 179 FKKKKTGGISFNST--LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNR 236
FKKK+ GGI+F+ T + T +D + I EYKIHNA+V+ R + TVD+ IDVIEGNR
Sbjct: 181 FKKKEKGGINFSHTPNVNPTQLDSETVKAICAEYKIHNADVILRGNCTVDEFIDVIEGNR 240
Query: 237 KYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKP 296
Y+ C+YV NKID I I+++D L + P+ V IS +L+ NLD LL ++WE + L+RVYTKP
Sbjct: 241 IYVPCIYVLNKIDAISIEELDLLDKIPHYVPISSHLEWNLDALLDKIWEYLKLIRVYTKP 300
Query: 297 QGQQPDFTEPVVL 309
+G PD+ EPVV+
Sbjct: 301 KGLIPDYNEPVVI 313
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P32233|DRG1_MOUSE Developmentally-regulated GTP-binding protein 1 OS=Mus musculus GN=Drg1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/309 (57%), Positives = 228/309 (73%), Gaps = 1/309 (0%)
Query: 2 GIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEG-FEVTKF 60
G + KI EIEAEMARTQKNKAT +HLG LKA++AKLR +L+ P G G F+V K
Sbjct: 3 GTLAKIAEIEAEMARTQKNKATAHHLGLLKARLAKLRRELITPKGGGGGGPGEGFDVAKT 62
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G R+ +GFPSVGKSTLL+ L G +SE A+YEFTTLT +PG+I Y KIQLLDLPGII
Sbjct: 63 GDARIGFVGFPSVGKSTLLSNLAGVYSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGII 122
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA +GKGRGRQVIAV+++ +++L+VLD K GH++I+ ELE G+RLN +PP I FK
Sbjct: 123 EGAKDGKGRGRQVIAVARTCNLILIVLDVLKPLGHKKIIENELEGFGIRLNSKPPNIGFK 182
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGI+ +T P + +D + IL EYKIHNA+V R DAT DDLIDV+EGNR Y+
Sbjct: 183 KKDKGGINLTATCPQSELDAETVKSILAEYKIHNADVTLRSDATADDLIDVVEGNRVYIP 242
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YV NKID I I+++D + + P+ V IS + + N D LL ++W+ + LVR+YTKP+GQ
Sbjct: 243 CIYVLNKIDQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQL 302
Query: 301 PDFTEPVVL 309
PD+T PVVL
Sbjct: 303 PDYTSPVVL 311
|
Critical regulator of cell growth under specific conditions. Implicated in differentiation and cell cycle arrest. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| 224054118 | 399 | predicted protein [Populus trichocarpa] | 0.981 | 0.779 | 0.964 | 1e-176 | |
| 224070823 | 400 | predicted protein [Populus trichocarpa] | 0.981 | 0.777 | 0.964 | 1e-175 | |
| 242042553 | 399 | hypothetical protein SORBIDRAFT_01g05002 | 0.977 | 0.776 | 0.941 | 1e-173 | |
| 226530349 | 399 | developmentally-regulated GTP-binding pr | 0.977 | 0.776 | 0.938 | 1e-173 | |
| 115463395 | 399 | Os05g0357600 [Oryza sativa Japonica Grou | 0.977 | 0.776 | 0.941 | 1e-172 | |
| 357135278 | 399 | PREDICTED: developmentally regulated G-p | 0.977 | 0.776 | 0.935 | 1e-171 | |
| 255560657 | 396 | developmentally regulated GTP-binding pr | 0.971 | 0.777 | 0.948 | 1e-171 | |
| 15220113 | 399 | developmentally regulated G-protein 1 [A | 0.977 | 0.776 | 0.925 | 1e-170 | |
| 15218561 | 399 | P-loop containing nucleoside triphosphat | 0.981 | 0.779 | 0.919 | 1e-170 | |
| 297839127 | 399 | hypothetical protein ARALYDRAFT_476401 [ | 0.981 | 0.779 | 0.919 | 1e-170 |
| >gi|224054118|ref|XP_002298101.1| predicted protein [Populus trichocarpa] gi|222845359|gb|EEE82906.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1605), Expect = e-176, Method: Compositional matrix adjust.
Identities = 300/311 (96%), Positives = 309/311 (99%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGIIE+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAG+GFEVTKF
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGDGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELE+VGLRLNK+PP+IYFK
Sbjct: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELESVGLRLNKKPPRIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK
Sbjct: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKIDVIGIDDVDKLARQPNSVVISCNLKLN DRLLA+MWEEMGLVRVYTKPQGQQ
Sbjct: 241 CIYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNFDRLLAKMWEEMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLSV 311
PDFT+PVVLS
Sbjct: 301 PDFTDPVVLST 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224070823|ref|XP_002303251.1| predicted protein [Populus trichocarpa] gi|222840683|gb|EEE78230.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 300/311 (96%), Positives = 307/311 (98%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAG+GFEVTKF
Sbjct: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGDGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFNSTL LTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK
Sbjct: 181 KKKTGGISFNSTLHLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKIDVIGIDDVDKLARQPNSVVISCNLKLN DRLLA+MWE MGLVRVYTKPQGQQ
Sbjct: 241 CIYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNFDRLLAKMWEAMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLSV 311
PDF++PVVLS
Sbjct: 301 PDFSDPVVLSA 311
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242042553|ref|XP_002468671.1| hypothetical protein SORBIDRAFT_01g050020 [Sorghum bicolor] gi|241922525|gb|EER95669.1| hypothetical protein SORBIDRAFT_01g050020 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 292/310 (94%), Positives = 309/310 (99%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAK+AKLRTQLLEPPKGSSG G+GFEVTKF
Sbjct: 1 MGILERIKEIEAEMARTQKNKATEYHLGQLKAKLAKLRTQLLEPPKGSSGGGDGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
+KKTGGISFN+T+PLTH+DEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKY+K
Sbjct: 181 RKKTGGISFNTTVPLTHIDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVDKLARQPNS+VISCNLKLNLDRLLARMW+EMGLVRVYTKPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDKLARQPNSLVISCNLKLNLDRLLARMWDEMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDFT+PVVLS
Sbjct: 301 PDFTDPVVLS 310
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|226530349|ref|NP_001149923.1| developmentally-regulated GTP-binding protein 2 [Zea mays] gi|195635479|gb|ACG37208.1| developmentally-regulated GTP-binding protein 2 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust.
Identities = 291/310 (93%), Positives = 308/310 (99%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAK+AKLRTQLLEPPKGSSG G+GFEVTKF
Sbjct: 1 MGILERIKEIEAEMARTQKNKATEYHLGQLKAKLAKLRTQLLEPPKGSSGGGDGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGI+HYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIVHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
+KKTGGISFN+T+PLTH+DEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKY+K
Sbjct: 181 RKKTGGISFNTTVPLTHIDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD LARQPNS+VISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDNLARQPNSLVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDFT+PVVLS
Sbjct: 301 PDFTDPVVLS 310
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115463395|ref|NP_001055297.1| Os05g0357600 [Oryza sativa Japonica Group] gi|55167981|gb|AAV43849.1| putative GTP binding protein [Oryza sativa Japonica Group] gi|113578848|dbj|BAF17211.1| Os05g0357600 [Oryza sativa Japonica Group] gi|215740529|dbj|BAG97185.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767068|dbj|BAG99296.1| unnamed protein product [Oryza sativa Japonica Group] gi|218196625|gb|EEC79052.1| hypothetical protein OsI_19615 [Oryza sativa Indica Group] gi|222631265|gb|EEE63397.1| hypothetical protein OsJ_18209 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 292/310 (94%), Positives = 306/310 (98%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGS+G G+GFEVTKF
Sbjct: 1 MGILERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSTGGGDGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGII YNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIQYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFNS +PLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD IDVIEGNRKY+K
Sbjct: 181 KKKTGGISFNSMIPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVDKLARQPNS+VISCNL+LNLDRLLARMWEEMGLVRVYTKPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDKLARQPNSLVISCNLQLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDFT+PVVLS
Sbjct: 301 PDFTDPVVLS 310
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357135278|ref|XP_003569237.1| PREDICTED: developmentally regulated G-protein 1-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 606 bits (1562), Expect = e-171, Method: Compositional matrix adjust.
Identities = 290/310 (93%), Positives = 305/310 (98%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKG+S GEGFEVTKF
Sbjct: 1 MGILERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASAGGEGFEVTKF 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGII+YNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIINYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
+KKTGGISFNST PLTH+DEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKY+K
Sbjct: 181 RKKTGGISFNSTAPLTHIDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD LARQPNS+VISCNL+LNLDRLLARMWEEMGLVRVYTKPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDNLARQPNSLVISCNLELNLDRLLARMWEEMGLVRVYTKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDF +PVVLS
Sbjct: 301 PDFGDPVVLS 310
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255560657|ref|XP_002521342.1| developmentally regulated GTP-binding protein, putative [Ricinus communis] gi|223539420|gb|EEF41010.1| developmentally regulated GTP-binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/311 (94%), Positives = 303/311 (97%), Gaps = 3/311 (0%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGIIE+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTK+
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT+ELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTRELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK
Sbjct: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNKIDVIGIDDVDKLARQPNSV LNLDRLLA+MW+EMGLVRVYTKPQGQQ
Sbjct: 241 CIYVYNKIDVIGIDDVDKLARQPNSVQ---QQNLNLDRLLAKMWDEMGLVRVYTKPQGQQ 297
Query: 301 PDFTEPVVLSV 311
PDFT+PVVLS
Sbjct: 298 PDFTDPVVLSA 308
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15220113|ref|NP_173190.1| developmentally regulated G-protein 1 [Arabidopsis thaliana] gi|145323932|ref|NP_001077555.1| developmentally regulated G-protein 1 [Arabidopsis thaliana] gi|75335333|sp|Q9LQK0.1|DRG1_ARATH RecName: Full=Developmentally regulated G-protein 1; Short=AtDRG1 gi|9665129|gb|AAF97313.1|AC007843_16 GTP binding protein [Arabidopsis thaliana] gi|59958304|gb|AAX12862.1| At1g17470 [Arabidopsis thaliana] gi|332191474|gb|AEE29595.1| developmentally regulated G-protein 1 [Arabidopsis thaliana] gi|332191475|gb|AEE29596.1| developmentally regulated G-protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 287/310 (92%), Positives = 304/310 (98%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGIIE+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKG+SG GEGFEVTK+
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNK PPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKTPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLTH+DEKLCYQILHEYKIHNAEVLFRE+ATVDD IDVIEGNRKY+K
Sbjct: 181 KKKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD+L+RQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDF EP VLS
Sbjct: 301 PDFDEPFVLS 310
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15218561|ref|NP_177410.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|79321186|ref|NP_001031270.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|79321194|ref|NP_001031271.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|75333649|sp|Q9CAI1.1|DRG2_ARATH RecName: Full=Developmentally regulated G-protein 2; Short=AtDRG2 gi|12323776|gb|AAG51856.1|AC010926_19 putative GTP-binding protein; 56356-53974 [Arabidopsis thaliana] gi|26452818|dbj|BAC43489.1| putative GTP-binding protein [Arabidopsis thaliana] gi|29824115|gb|AAP04018.1| putative GTP-binding protein [Arabidopsis thaliana] gi|332197235|gb|AEE35356.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|332197236|gb|AEE35357.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|332197237|gb|AEE35358.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 286/311 (91%), Positives = 303/311 (97%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSG G+GFEVTK+
Sbjct: 1 MGIVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLT +DEKLCYQILHEYKIHNAEVLFREDATVDD IDV+EGNRKY+K
Sbjct: 181 KKKTGGISFNTTTPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVVEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD+LARQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQ QQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQSQQ 300
Query: 301 PDFTEPVVLSV 311
PDF EP VLS
Sbjct: 301 PDFDEPFVLSA 311
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839127|ref|XP_002887445.1| hypothetical protein ARALYDRAFT_476401 [Arabidopsis lyrata subsp. lyrata] gi|297333286|gb|EFH63704.1| hypothetical protein ARALYDRAFT_476401 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 286/311 (91%), Positives = 303/311 (97%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MGI+E+IKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSG G+GFEVTK+
Sbjct: 1 MGIVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKSTLLT+LTGTHSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKS+GHRQILTKELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSQGHRQILTKELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLT +DEKLCYQILHEYKIHNAEVLFREDATVDD IDVIEGNRKY+K
Sbjct: 181 KKKTGGISFNTTAPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVIEGNRKYIK 240
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNKIDV+GIDDVD+LARQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQ QQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQSQQ 300
Query: 301 PDFTEPVVLSV 311
PDF EP VLS
Sbjct: 301 PDFDEPFVLSA 311
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| TAIR|locus:2018826 | 399 | DRG1 "developmentally regulate | 0.977 | 0.776 | 0.838 | 1.3e-137 | |
| TAIR|locus:2030240 | 399 | AT1G72660 [Arabidopsis thalian | 0.977 | 0.776 | 0.838 | 1.7e-137 | |
| UNIPROTKB|E2RJ29 | 364 | DRG2 "Uncharacterized protein" | 0.974 | 0.848 | 0.631 | 1.2e-99 | |
| UNIPROTKB|A8MZF9 | 343 | DRG2 "Developmentally-regulate | 0.974 | 0.900 | 0.627 | 1.5e-99 | |
| UNIPROTKB|P55039 | 364 | DRG2 "Developmentally-regulate | 0.974 | 0.848 | 0.627 | 1.5e-99 | |
| UNIPROTKB|Q58D56 | 364 | DRG2 "Developmentally-regulate | 0.974 | 0.848 | 0.631 | 1.9e-99 | |
| MGI|MGI:1342307 | 364 | Drg2 "developmentally regulate | 0.974 | 0.848 | 0.627 | 2.4e-99 | |
| UNIPROTKB|F1NIK3 | 364 | DRG2 "Uncharacterized protein" | 0.974 | 0.848 | 0.627 | 3.1e-99 | |
| ZFIN|ZDB-GENE-040808-29 | 364 | drg2 "developmentally regulate | 0.930 | 0.810 | 0.630 | 1.7e-98 | |
| WB|WBGene00015346 | 366 | C02F5.3 [Caenorhabditis elegan | 0.949 | 0.822 | 0.617 | 5.8e-98 |
| TAIR|locus:2018826 DRG1 "developmentally regulated G-protein 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1347 (479.2 bits), Expect = 1.3e-137, P = 1.3e-137
Identities = 260/310 (83%), Positives = 274/310 (88%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG MARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKG+SG GEGFEVTK+
Sbjct: 1 MGIIERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGASGGGEGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKS HSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNK PPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKTPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLTH+DEKLCYQILHEYKIHNAEVLFRE+ATVDD IDVIEGNRKY+K
Sbjct: 181 KKKTGGISFNTTAPLTHIDEKLCYQILHEYKIHNAEVLFRENATVDDFIDVIEGNRKYIK 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNK +L+RQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQGQQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQ 300
Query: 301 PDFTEPVVLS 310
PDF EP VLS
Sbjct: 301 PDFDEPFVLS 310
|
|
| TAIR|locus:2030240 AT1G72660 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.7e-137, P = 1.7e-137
Identities = 260/310 (83%), Positives = 273/310 (88%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG MARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSG G+GFEVTK+
Sbjct: 1 MGIVERIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGGGDGFEVTKY 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
GHGRVALIGFPSVGKS HSEAASYEFTTLTCIPG+IHYNDTKIQLLDLPGII
Sbjct: 61 GHGRVALIGFPSVGKSTLLTMLTGTHSEAASYEFTTLTCIPGVIHYNDTKIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGASEGKGRGRQVIAV+KSSD+VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK
Sbjct: 121 EGASEGKGRGRQVIAVAKSSDLVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KKKTGGISFN+T PLT +DEKLCYQILHEYKIHNAEVLFREDATVDD IDV+EGNRKY+K
Sbjct: 181 KKKTGGISFNTTTPLTRIDEKLCYQILHEYKIHNAEVLFREDATVDDFIDVVEGNRKYIK 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
CVYVYNK +LARQPNS+VISCNLKLNLDRLLARMW+EMGLVRVY+KPQ QQ
Sbjct: 241 CVYVYNKIDVVGIDDVDRLARQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQSQQ 300
Query: 301 PDFTEPVVLS 310
PDF EP VLS
Sbjct: 301 PDFDEPFVLS 310
|
|
| UNIPROTKB|E2RJ29 DRG2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 195/309 (63%), Positives = 228/309 (73%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+V+M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVVIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| UNIPROTKB|A8MZF9 DRG2 "Developmentally-regulated GTP-binding protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 194/309 (62%), Positives = 228/309 (73%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+++M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| UNIPROTKB|P55039 DRG2 "Developmentally-regulated GTP-binding protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 194/309 (62%), Positives = 228/309 (73%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+++M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVIIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| UNIPROTKB|Q58D56 DRG2 "Developmentally-regulated GTP-binding protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
Identities = 195/309 (63%), Positives = 228/309 (73%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K SS GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSSSSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+V+M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVVIMMLDATKGEVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+P+SVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPDSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| MGI|MGI:1342307 Drg2 "developmentally regulated GTP binding protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 986 (352.1 bits), Expect = 2.4e-99, P = 2.4e-99
Identities = 194/309 (62%), Positives = 228/309 (73%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K +S GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSASSKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++G+GRGRQVIAV++++D+V+M+LDA+K + R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGRGRGRQVIAVARTADVVVMMLDATKGDVQRSLLEKELESVGIRLNKHKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + DD IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+PNSVVISC +KLNLD LL +WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| UNIPROTKB|F1NIK3 DRG2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 985 (351.8 bits), Expect = 3.1e-99, P = 3.1e-99
Identities = 194/309 (62%), Positives = 229/309 (74%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
MG +ARTQKNKATEYHLG LKAK+AK R QLLEP K S+ GEGF+V K
Sbjct: 1 MGILEKISEIEKEIARTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSSAAKGEGFDVMKS 60
Query: 61 GHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G RVALIGFPSVGKS SEAASYEFTTLTCIPG+I Y IQLLDLPGII
Sbjct: 61 GDARVALIGFPSVGKSTFLSLMTSTASEAASYEFTTLTCIPGVIEYKGANIQLLDLPGII 120
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGA++GKGRGRQVIAV++++D+V+M+LDA+K E R +L KELE+VG+RLNK P IYFK
Sbjct: 121 EGAAQGKGRGRQVIAVARTADVVIMMLDATKGEVQRALLEKELESVGIRLNKSKPNIYFK 180
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK GGISFNST+ LT EKL ILHEYKI NAEVLFRED + D+ IDVI GNR YM
Sbjct: 181 PKKGGGISFNSTVTLTQCSEKLVQLILHEYKIFNAEVLFREDCSPDEFIDVIVGNRVYMP 240
Query: 241 CVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
C+YVYNK +LAR+P+SVVISC +KLNLD LL ++WE + L +YTK +GQ+
Sbjct: 241 CLYVYNKIDQISMEEVDRLARRPHSVVISCGMKLNLDYLLEKLWEYLALTCIYTKKRGQR 300
Query: 301 PDFTEPVVL 309
PDFT+ ++L
Sbjct: 301 PDFTDAIIL 309
|
|
| ZFIN|ZDB-GENE-040808-29 drg2 "developmentally regulated GTP binding protein 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 186/295 (63%), Positives = 227/295 (76%)
Query: 15 ARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVG 74
+RTQKNKATEYHLG LKAK+AK R QLLEP K + GEGF+V K G RVALIGFPSVG
Sbjct: 15 SRTQKNKATEYHLGLLKAKLAKYRAQLLEPSKSAGAKGEGFDVMKSGDARVALIGFPSVG 74
Query: 75 KSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134
KS SEAASYEFTTLTCIPG+I Y IQLLDLPGIIEGA++GKGRGRQVI
Sbjct: 75 KSTFLSLMTKTESEAASYEFTTLTCIPGVIEYKGANIQLLDLPGIIEGAAQGKGRGRQVI 134
Query: 135 AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLP 194
AV++++D+V+M+LDA+K + R++L KELE+VG+RLN+ P IYFK KK GG+S+NST+P
Sbjct: 135 AVARTADVVIMMLDATKGDVQRELLEKELESVGIRLNRPKPNIYFKPKKGGGLSYNSTVP 194
Query: 195 LTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKXXXXXXX 254
LT EKL ILHEYKI NAEVLFRED + DD IDVI GNR YM C+YVYNK
Sbjct: 195 LTQCSEKLVQLILHEYKIFNAEVLFREDCSPDDFIDVIVGNRVYMPCLYVYNKVDQISIE 254
Query: 255 XXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVL 309
+LA +PNSVVISC +KLNLD LL ++WE + L+ +YTK +G++PDF +P+++
Sbjct: 255 EVDRLAHRPNSVVISCGMKLNLDYLLEQLWEYLALICIYTKKRGERPDFGDPIIM 309
|
|
| WB|WBGene00015346 C02F5.3 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
Identities = 187/303 (61%), Positives = 225/303 (74%)
Query: 1 MGXXXXXXXXXXXMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGA-GEGFEVTK 59
MG ++RTQKNKATEYHLG LKAK+AK R QLLEP G GA GEGF+V K
Sbjct: 1 MGILEKIAEIEHEISRTQKNKATEYHLGLLKAKLAKYRQQLLEPT-GKGGAKGEGFDVMK 59
Query: 60 FGHGRVALIGFPSVGKSXXXXXXXXXHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 119
G RVA++GFPSVGKS HSEAA YEFTTLTCIPG+I YN IQLLDLPGI
Sbjct: 60 SGDARVAMVGFPSVGKSTLLSSMTSTHSEAAGYEFTTLTCIPGVISYNGANIQLLDLPGI 119
Query: 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYF 179
IEGAS+GKGRGRQVI+V+K++D++LM+LDA KS+ + +L +ELEAVG+RLNK+PP IY
Sbjct: 120 IEGASQGKGRGRQVISVAKTADLILMMLDAGKSDQQKMLLERELEAVGIRLNKKPPNIYV 179
Query: 180 KKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYM 239
K+KK GG+ F +T+PLTH +EKL +LHEYKI NA+V+FRED TVD+ IDVI+GNR YM
Sbjct: 180 KQKKVGGVKFTNTVPLTHCNEKLIMTVLHEYKIFNADVIFREDCTVDEFIDVIQGNRVYM 239
Query: 240 KCVYVYNKXXXXXXXXXXKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQ 299
C+YVYNK +LAR P+ VVISC + LN+D LL +MWE + LVRVYTK G
Sbjct: 240 TCLYVYNKVDQISIEEIDRLARMPHHVVISCEMNLNMDYLLEKMWEYLALVRVYTKKPGN 299
Query: 300 QPD 302
PD
Sbjct: 300 APD 302
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q54WT4 | DRG2_DICDI | No assigned EC number | 0.6343 | 0.9747 | 0.8489 | yes | no |
| P32235 | GTP1_SCHPO | No assigned EC number | 0.6116 | 0.9716 | 0.8461 | yes | no |
| Q58D56 | DRG2_BOVIN | No assigned EC number | 0.6893 | 0.9747 | 0.8489 | yes | no |
| P43690 | DRG1_XENLA | No assigned EC number | 0.5663 | 0.9716 | 0.8392 | N/A | no |
| P55039 | DRG2_HUMAN | No assigned EC number | 0.6860 | 0.9747 | 0.8489 | yes | no |
| Q9LQK0 | DRG1_ARATH | No assigned EC number | 0.9258 | 0.9779 | 0.7769 | yes | no |
| P34280 | YKK3_CAEEL | No assigned EC number | 0.6633 | 0.9558 | 0.8278 | yes | no |
| Q9CAI1 | DRG2_ARATH | No assigned EC number | 0.9196 | 0.9810 | 0.7794 | yes | no |
| Q9QXB9 | DRG2_MOUSE | No assigned EC number | 0.6860 | 0.9747 | 0.8489 | yes | no |
| P39729 | RBG1_YEAST | No assigned EC number | 0.5792 | 0.9652 | 0.8292 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| COG1163 | 365 | COG1163, DRG, Predicted GTPase [General function p | 1e-162 | |
| cd01896 | 233 | cd01896, DRG, Developmentally Regulated GTP-bindin | 1e-154 | |
| cd01881 | 167 | cd01881, Obg_like, Obg-like family of GTPases cons | 1e-33 | |
| pfam01926 | 117 | pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | 7e-22 | |
| cd01898 | 170 | cd01898, Obg, Obg GTPase | 2e-21 | |
| PRK12297 | 424 | PRK12297, obgE, GTPase CgtA; Reviewed | 9e-21 | |
| COG0536 | 369 | COG0536, Obg, Predicted GTPase [General function p | 2e-19 | |
| TIGR02729 | 329 | TIGR02729, Obg_CgtA, Obg family GTPase CgtA | 1e-18 | |
| TIGR00231 | 162 | TIGR00231, small_GTP, small GTP-binding protein do | 1e-16 | |
| PRK12299 | 335 | PRK12299, obgE, GTPase CgtA; Reviewed | 5e-15 | |
| PRK12296 | 500 | PRK12296, obgE, GTPase CgtA; Reviewed | 2e-13 | |
| COG0012 | 372 | COG0012, COG0012, Predicted GTPase, probable trans | 1e-12 | |
| PRK12298 | 390 | PRK12298, obgE, GTPase CgtA; Reviewed | 3e-12 | |
| cd00880 | 161 | cd00880, Era_like, E | 3e-12 | |
| cd01899 | 318 | cd01899, Ygr210, Ygr210 GTPase | 5e-11 | |
| cd01879 | 159 | cd01879, FeoB, Ferrous iron transport protein B (F | 3e-10 | |
| PRK09602 | 396 | PRK09602, PRK09602, translation-associated GTPase; | 4e-10 | |
| pfam02421 | 190 | pfam02421, FeoB_N, Ferrous iron transport protein | 5e-10 | |
| cd01897 | 167 | cd01897, NOG, Nucleolar GTP-binding protein (NOG) | 6e-10 | |
| COG1084 | 346 | COG1084, COG1084, Predicted GTPase [General functi | 3e-09 | |
| cd00882 | 161 | cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s | 2e-08 | |
| COG0370 | 653 | COG0370, FeoB, Fe2+ transport system protein B [In | 2e-08 | |
| cd04163 | 168 | cd04163, Era, E | 3e-08 | |
| PRK09601 | 364 | PRK09601, PRK09601, GTP-binding protein YchF; Revi | 8e-08 | |
| cd01894 | 157 | cd01894, EngA1, EngA1 GTPase contains the first do | 2e-07 | |
| cd01666 | 75 | cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall | 3e-07 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 4e-07 | |
| PRK15494 | 339 | PRK15494, era, GTPase Era; Provisional | 6e-07 | |
| PRK00089 | 292 | PRK00089, era, GTPase Era; Reviewed | 2e-06 | |
| cd01895 | 174 | cd01895, EngA2, EngA2 GTPase contains the second d | 2e-06 | |
| COG1159 | 298 | COG1159, Era, GTPase [General function prediction | 2e-06 | |
| COG2262 | 411 | COG2262, HflX, GTPases [General function predictio | 3e-06 | |
| TIGR03156 | 351 | TIGR03156, GTP_HflX, GTP-binding protein HflX | 4e-06 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 6e-06 | |
| cd04164 | 159 | cd04164, trmE, trmE is a tRNA modification GTPase | 7e-06 | |
| COG1160 | 444 | COG1160, COG1160, Predicted GTPases [General funct | 1e-05 | |
| TIGR00450 | 442 | TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas | 1e-05 | |
| TIGR03594 | 429 | TIGR03594, GTPase_EngA, ribosome-associated GTPase | 2e-05 | |
| PRK05291 | 449 | PRK05291, trmE, tRNA modification GTPase TrmE; Rev | 2e-05 | |
| COG0486 | 454 | COG0486, ThdF, Predicted GTPase [General function | 3e-05 | |
| PTZ00258 | 390 | PTZ00258, PTZ00258, GTP-binding protein; Provision | 8e-05 | |
| PRK09554 | 772 | PRK09554, feoB, ferrous iron transport protein B; | 1e-04 | |
| TIGR00437 | 591 | TIGR00437, feoB, ferrous iron transporter FeoB | 1e-04 | |
| cd01900 | 274 | cd01900, YchF, YchF GTPase | 2e-04 | |
| TIGR00436 | 270 | TIGR00436, era, GTP-binding protein Era | 2e-04 | |
| cd01856 | 171 | cd01856, YlqF, Circularly permuted YlqF GTPase | 2e-04 | |
| cd01878 | 204 | cd01878, HflX, HflX GTPase family | 3e-04 | |
| cd01859 | 157 | cd01859, MJ1464, An uncharacterized, circularly pe | 3e-04 | |
| COG1161 | 322 | COG1161, COG1161, Predicted GTPases [General funct | 5e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 5e-04 | |
| PRK00093 | 435 | PRK00093, PRK00093, GTP-binding protein Der; Revie | 0.003 | |
| PRK09518 | 712 | PRK09518, PRK09518, bifunctional cytidylate kinase | 0.003 |
| >gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 456 bits (1176), Expect = e-162
Identities = 180/309 (58%), Positives = 233/309 (75%)
Query: 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKF 60
M I EKIK IE E+ART KNKATE+H+G LKAK+A+LR +L + S G G GF V K
Sbjct: 2 MTIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKS 61
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120
G VAL+GFPSVGKSTLL LT T SE A Y FTTL +PG++ Y +IQLLDLPGII
Sbjct: 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGII 121
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFK 180
EGAS G+GRGRQV++V++++D++++VLD + HR I+ +ELE VG+RLNKRPP + K
Sbjct: 122 EGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIK 181
Query: 181 KKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240
KK++GGI N T PLTH+DE IL EY+IHNA+VL RED T+DDLID +EGNR Y
Sbjct: 182 KKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKP 241
Query: 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQ 300
+YV NKID+ G++++++LAR+PNSV IS +NLD L R+W+ +GL+RVYTKP G++
Sbjct: 242 ALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEE 301
Query: 301 PDFTEPVVL 309
PDF EP++L
Sbjct: 302 PDFDEPLIL 310
|
Length = 365 |
| >gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG) | Back alignment and domain information |
|---|
Score = 430 bits (1109), Expect = e-154
Identities = 159/232 (68%), Positives = 195/232 (84%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123
RVAL+GFPSVGKSTLL+ LT T SE A+YEFTTLTC+PG++ Y KIQLLDLPGIIEGA
Sbjct: 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVMEYKGAKIQLLDLPGIIEGA 61
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183
S+GKGRGRQVIAV++++D++L+VLDA+K EG R+IL +ELE VG+RLNK+PP + KKKK
Sbjct: 62 SDGKGRGRQVIAVARTADLILIVLDATKPEGQREILERELEGVGIRLNKKPPNVTIKKKK 121
Query: 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVY 243
GGI+ ST+PLT +DEK IL EYKIHNA+VL RED TVDDLIDVIEGNR Y+ C+Y
Sbjct: 122 KGGINITSTVPLTKLDEKTVKAILREYKIHNADVLIREDITVDDLIDVIEGNRVYIPCLY 181
Query: 244 VYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 295
VYNKID+I I+++D+LAR PNSVVIS LNLD LL R+W+ +GL+R+YTK
Sbjct: 182 VYNKIDLISIEELDRLARIPNSVVISAEKDLNLDELLERIWDYLGLIRIYTK 233
|
The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233 |
| >gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-33
Identities = 64/228 (28%), Positives = 93/228 (40%), Gaps = 67/228 (29%)
Query: 66 ALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGAS 124
L+G P+VGKSTLL+ LT E ASY FTTL G+ + D IQ++DLPG+++GAS
Sbjct: 1 GLVGLPNVGKSTLLSALTSAKVEIASYPFTTLEPNVGVFEFGDGVDIQIIDLPGLLDGAS 60
Query: 125 EGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKT 184
EG+G G Q++A SD++L V+DAS+
Sbjct: 61 EGRGLGEQILAHLYRSDLILHVIDASEDCVG----------------------------- 91
Query: 185 GGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYV 244
L + K L E + K + V
Sbjct: 92 --------------------DPLEDQKT-----LNEE-------VSGSFLFLKNKPEMIV 119
Query: 245 YNKIDV-----IGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 287
NKID+ + +DKL R V S +L LDR++ + + +
Sbjct: 120 ANKIDMASENNLKRLKLDKLKRGIPVVPTSALTRLGLDRVIRTIRKLL 167
|
The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167 |
| >gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 7e-22
Identities = 47/122 (38%), Positives = 72/122 (59%), Gaps = 9/122 (7%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122
RVAL+G P+VGKSTL+ LTG + + Y TT I G++ +I L+D PG+IEG
Sbjct: 1 RVALVGRPNVGKSTLINALTGAKVAIVSDYPGTTRDPILGVLGLGR-QIILVDTPGLIEG 59
Query: 123 ASEGKG--RGRQVIAVSKSSDIVLMVLDASKS-EGHRQILTKELEAVGLRLNKRPPQIYF 179
ASEGKG + + + +D++L+V+DAS+ + + +ELE +L K+P +
Sbjct: 60 ASEGKGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELE----KLPKKPIILVL 115
Query: 180 KK 181
K
Sbjct: 116 NK 117
|
The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117 |
| >gnl|CDD|206685 cd01898, Obg, Obg GTPase | Back alignment and domain information |
|---|
Score = 88.6 bits (221), Expect = 2e-21
Identities = 43/120 (35%), Positives = 68/120 (56%), Gaps = 16/120 (13%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTK-IQLLDLPGIIE 121
V L+G P+ GKSTLL+ ++ + A Y FTTL +P G++ +D + + D+PG+IE
Sbjct: 3 VGLVGLPNAGKSTLLSAISNAKPKIADYPFTTL--VPNLGVVRVDDGRSFVIADIPGLIE 60
Query: 122 GASEGKGRG----RQVIAVSKSSDIVLMVLDASKSE---GHRQILTKELEAVGLRLNKRP 174
GASEGKG G R + + + ++L V+D S + + + ELEA L ++P
Sbjct: 61 GASEGKGLGHRFLRHI----ERTRVLLHVIDLSGEDDPVEDYETIRNELEAYNPGLAEKP 116
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. Length = 170 |
| >gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 9e-21
Identities = 49/122 (40%), Positives = 74/122 (60%), Gaps = 13/122 (10%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 123
V L+GFP+VGKSTLL++++ + A+Y FTTL G++ +D + + D+PG+IEGA
Sbjct: 161 VGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGA 220
Query: 124 SEGKGRGRQV---IAVSKSSDIVLMVLDASKSEGHR-----QILTKELEAVGLRLNKRPP 175
SEG G G Q I ++ +++ V+D S SEG + + KEL+ RL +R P
Sbjct: 221 SEGVGLGHQFLRHIERTR---VIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLER-P 276
Query: 176 QI 177
QI
Sbjct: 277 QI 278
|
Length = 424 |
| >gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 2e-19
Identities = 41/119 (34%), Positives = 65/119 (54%), Gaps = 12/119 (10%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 123
V L+G P+ GKSTLL+ ++ + A Y FTTL G++ + + + D+PG+IEGA
Sbjct: 162 VGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGA 221
Query: 124 SEGKGRGRQV---IAVSKSSDIVLMVLDASKSEGHR-----QILTKELEAVGLRLNKRP 174
SEG G G + I ++ ++L V+D S +G Q + ELE +L ++P
Sbjct: 222 SEGVGLGLRFLRHIERTR---VLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKP 277
|
Length = 369 |
| >gnl|CDD|233986 TIGR02729, Obg_CgtA, Obg family GTPase CgtA | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 1e-18
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 12/119 (10%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 123
V L+G P+ GKSTL++ ++ + A Y FTTL G++ +D + + D+PG+IEGA
Sbjct: 160 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGA 219
Query: 124 SEGKGRGRQV---IAVSKSSDIVLMVLDASKSEGHR-----QILTKELEAVGLRLNKRP 174
SEG G G + I ++ ++L ++D S +G +I+ EL+ L ++P
Sbjct: 220 SEGAGLGHRFLKHIERTR---VLLHLIDISPEDGSDPIEDYEIIRNELKKYSPELAEKP 275
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal [Protein synthesis, Other]. Length = 329 |
| >gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-16
Identities = 38/161 (23%), Positives = 64/161 (39%), Gaps = 8/161 (4%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGI 119
++ ++G P+VGKSTLL L G S TT + +I + K LLD G
Sbjct: 2 IKIVIVGDPNVGKSTLLNRLLGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 61
Query: 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS-EGHRQILTKELEA-VGLRLNKRP--- 174
+ + + R V + + DIV++VLD + E + + E+ V + L
Sbjct: 62 EDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAESGVPIILVGNKIDL 121
Query: 175 PQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215
K + + P+ + + I +KI A
Sbjct: 122 RDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVEA 162
|
Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162 |
| >gnl|CDD|237048 PRK12299, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 5e-15
Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 123
V L+G P+ GKSTL++ ++ + A Y FTTL G++ +D K + D+PG+IEGA
Sbjct: 161 VGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGA 220
Query: 124 SEGKGRG 130
SEG G G
Sbjct: 221 SEGAGLG 227
|
Length = 335 |
| >gnl|CDD|237045 PRK12296, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 2e-13
Identities = 33/68 (48%), Positives = 46/68 (67%), Gaps = 4/68 (5%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLLDLPGIIEG 122
V L+GFPS GKS+L++ L+ + A Y FTTL +P G++ DT+ + D+PG+I G
Sbjct: 162 VGLVGFPSAGKSSLISALSAAKPKIADYPFTTL--VPNLGVVQAGDTRFTVADVPGLIPG 219
Query: 123 ASEGKGRG 130
ASEGKG G
Sbjct: 220 ASEGKGLG 227
|
Length = 500 |
| >gnl|CDD|223091 COG0012, COG0012, Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 1e-12
Identities = 54/248 (21%), Positives = 96/248 (38%), Gaps = 52/248 (20%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTL---------------------TCIPG 102
++ ++G P+VGKSTL LT +E A+Y F T+ C P
Sbjct: 4 KIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPK 63
Query: 103 IIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEG--HR---- 156
I ++ +D+ G+++GAS+G+G G + + + D ++ V+ H
Sbjct: 64 IRP---APVEFVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKV 120
Query: 157 ------QILTKEL-EAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL-- 207
+I+ EL L KR + +K+ G + L +E L
Sbjct: 121 DPVEDIEIINTELILWDLESLEKRWER--LEKRAKAGKKLDKEL----KEELSLLGKLEE 174
Query: 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK-CVYVYNKIDVI------GIDDVDKLA 260
H + A L + +DL + N K +YV N + + + +LA
Sbjct: 175 HLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANLNEYVKRLKELA 234
Query: 261 RQPNSVVI 268
+ N+ V+
Sbjct: 235 AKENAEVV 242
|
Length = 372 |
| >gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 5/69 (7%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTK-IQLLDLPGIIE 121
V L+G P+ GKST + ++ + A Y FTTL +P G++ +D + + D+PG+IE
Sbjct: 162 VGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTL--VPNLGVVRVDDERSFVVADIPGLIE 219
Query: 122 GASEGKGRG 130
GASEG G G
Sbjct: 220 GASEGAGLG 228
|
Length = 390 |
| >gnl|CDD|206646 cd00880, Era_like, E | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 3e-12
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 6/113 (5%)
Query: 66 ALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPG-IIHYNDTKIQLLDLPGIIEGA 123
A+ G P+VGKS+LL L G + + TT + + L+D PG+ E
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEEG 60
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLR----LNK 172
G+ R + V+ +D+VL+V+D+ + + L G LNK
Sbjct: 61 GLGRERVEEARQVADRADLVLLVVDSDLTPVEEEAKLGLLRERGKPVLLVLNK 113
|
coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161 |
| >gnl|CDD|206686 cd01899, Ygr210, Ygr210 GTPase | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 24/110 (21%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTT--------------------LTCIPGII 104
+ L+G P+VGKST T E A+Y FTT ++C P
Sbjct: 1 IGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYG 60
Query: 105 HYNDTK----IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
D K ++L+D+ G++ GA EGKG G Q + + +D+++ V+DAS
Sbjct: 61 KCIDGKRYVPVELIDVAGLVPGAHEGKGLGNQFLDDLRDADVLIHVVDAS 110
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. Length = 318 |
| >gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 3e-10
Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 66 ALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGA 123
AL+G P+VGK+TL LTG + ++ T+ G +I+++DLPG +
Sbjct: 1 ALVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGEFKLGGKEIEIVDLPGTYSLTPY 60
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDAS 150
SE + R + + + D+++ V+DA+
Sbjct: 61 SEDEKVARDFL-LGEEPDLIVNVVDAT 86
|
Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159 |
| >gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 4e-10
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 27/119 (22%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT--------------------LTCIPGI 103
+ L+G P+VGKST T E A+Y FTT + C P
Sbjct: 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRN 62
Query: 104 IHYNDTK----IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS---EGH 155
D ++L+D+ G++ GA EG+G G Q + + +D ++ V+DAS S EG+
Sbjct: 63 GKCIDGTRFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGN 121
|
Length = 396 |
| >gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 5e-10
Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+AL+G P+VGK+TL LTG ++ T+ G Y +I+++DLPG +
Sbjct: 2 TIALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLS 61
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
SE + R + + + D+++ V+DA+
Sbjct: 62 PYSEEEKVARDYL-LEEKPDVIINVVDAT 89
|
Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190 |
| >gnl|CDD|206684 cd01897, NOG, Nucleolar GTP-binding protein (NOG) | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 6e-10
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 20/98 (20%)
Query: 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--------- 119
G+P+VGKS+L+ LT E A Y FTT + G Y + Q++D PGI
Sbjct: 7 GYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGILDRPLEERN 66
Query: 120 -IEGASEGKGRGRQVI-AVSKSSDIVLMVLDASKSEGH 155
IE Q I A++ VL +D S++ G+
Sbjct: 67 TIE---------MQAITALAHLRAAVLFFIDPSETCGY 95
|
NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. Length = 167 |
| >gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 3e-09
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE-GASEGK 127
G+P+VGKS+L+ LT E A Y FTT G +IQ++D PG+++ E
Sbjct: 175 GYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234
Query: 128 GRGRQVI-AVSKSSDIVLMVLDASKSEG 154
RQ I A+ + ++L + D S++ G
Sbjct: 235 EIERQAILALRHLAGVILFLFDPSETCG 262
|
Length = 346 |
| >gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases) | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-08
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 66 ALIGFPSVGKSTLL-TLLTGTHSEAASYEFTTLTCIPG--IIHYNDTKIQLLDLPGIIEG 122
++G VGKS+LL LL G E + TT + K+ L+D PG+ E
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLVDTPGLDEF 60
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSE 153
G GR + + +D++L+V+D++ E
Sbjct: 61 --GGLGREELARLLLRGADLILLVVDSTDRE 89
|
Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161 |
| >gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-08
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 11/93 (11%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
VAL+G P+VGK+TL LTG + + ++ T+ G + Y +I+++DLPG +
Sbjct: 5 TVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLT 64
Query: 122 GASEGKGRGRQVIAV----SKSSDIVLMVLDAS 150
SE + +A D+++ V+DA+
Sbjct: 65 AYSE-----DEKVARDFLLEGKPDLIVNVVDAT 92
|
Length = 653 |
| >gnl|CDD|206726 cd04163, Era, E | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 3e-08
Identities = 40/102 (39%), Positives = 53/102 (51%), Gaps = 6/102 (5%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIE 121
G VA+IG P+VGKSTLL L G S + TT I GI +D +I +D PGI +
Sbjct: 4 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHK 63
Query: 122 GASEGKGRG--RQVIAVSKSSDIVLMVLDASK--SEGHRQIL 159
+ G + + K D+VL V+DAS+ EG IL
Sbjct: 64 -PKKKLGERMVKAAWSALKDVDLVLFVVDASEWIGEGDEFIL 104
|
coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168 |
| >gnl|CDD|236583 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 8e-08
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 23/92 (25%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT-----------------LTCIPG---I 103
+ ++G P+VGKSTL LT +EAA+Y F T L I I
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKI 63
Query: 104 IHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135
+ I+ +D+ G+++GAS+G+G G Q +A
Sbjct: 64 VP---ATIEFVDIAGLVKGASKGEGLGNQFLA 92
|
Length = 364 |
| >gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-07
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 12/114 (10%)
Query: 66 ALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123
A++G P+VGKSTL LTG +A + T G + + L+D GI
Sbjct: 1 AIVGRPNVGKSTLFNRLTGRR-DAIVSDTPGVTRDRKYGEAEWGGREFILIDTGGIEPDD 59
Query: 124 SEGKGRGR-QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG--LRLNKRP 174
R Q + +D++L V+D R+ LT E + LR +K+P
Sbjct: 60 EGISKEIREQAEIAIEEADVILFVVDG------REGLTPADEEIAKYLRKSKKP 107
|
This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157 |
| >gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 3e-07
Identities = 16/22 (72%), Positives = 20/22 (90%)
Query: 289 LVRVYTKPQGQQPDFTEPVVLS 310
L+RVYTKP+GQ+PDF EPV+L
Sbjct: 1 LIRVYTKPKGQEPDFDEPVILR 22
|
DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 75 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121
VA++G P+VGKSTL LTG A + T I G + + L+D G+ +
Sbjct: 5 VVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDD 63
Query: 122 GASEGKGRGR--QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG--LRLNKRP 174
G + Q + + +D++L V+D R+ +T E + LR +K+P
Sbjct: 64 GDEDELQELIREQALIAIEEADVILFVVDG------REGITPADEEIAKILRRSKKP 114
|
Length = 444 |
| >gnl|CDD|185391 PRK15494, era, GTPase Era; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (119), Expect = 6e-07
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIE-G 122
V +IG P+ GKSTLL + G + + TT + I GII DT++ L D PGI E
Sbjct: 55 VCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPK 114
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152
S K R + S+D+VL+++D+ KS
Sbjct: 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKS 144
|
Length = 339 |
| >gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 2e-06
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 16/119 (13%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
G VA++G P+VGKSTLL L G S TT I GI+ +D +I +D PG
Sbjct: 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQ---TTRHRIRGIVTEDDAQIIFVDTPG 62
Query: 119 IIEGASE-GKGRGRQVIAVSKSSDIVLMVLDASK--SEGHRQILTKELEAVGLRLNKRP 174
I + + + + K D+VL V+DA + G IL K L+ K P
Sbjct: 63 IHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEK------LKKVKTP 115
|
Length = 292 |
| >gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 2e-06
Identities = 33/99 (33%), Positives = 47/99 (47%), Gaps = 19/99 (19%)
Query: 64 RVALIGFPSVGKSTLLTLLTG-----THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
++A+IG P+VGKS+LL L G A TT I Y+ K L+D G
Sbjct: 4 KIAIIGRPNVGKSSLLNALLGEERVIVSDIAG----TTRDSIDVPFEYDGQKYTLIDTAG 59
Query: 119 IIEGASEGKG-------RGRQVIAVSKSSDIVLMVLDAS 150
I + +G R + I + +D+VL+VLDAS
Sbjct: 60 IRKKGKVTEGIEKYSVLRTLKAI---ERADVVLLVLDAS 95
|
This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174 |
| >gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 14/115 (12%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
G VA+IG P+VGKSTLL L G S TT I GI+ ++ +I +D PG
Sbjct: 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQ---TTRNRIRGIVTTDNAQIIFVDTPG 63
Query: 119 I-IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNK 172
I + G+ + + K D++L V+DA + E + +L K
Sbjct: 64 IHKPKHALGELMNKAARSALKDVDLILFVVDADEG------WGPGDEFILEQLKK 112
|
Length = 298 |
| >gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 3e-06
Identities = 62/259 (23%), Positives = 97/259 (37%), Gaps = 74/259 (28%)
Query: 30 LKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEA 89
++ +IAKL+ +L K + + G VAL+G+ + GKSTL LTG
Sbjct: 162 IRRRIAKLKRELENVEKAREPRRKKRS--RSGIPLVALVGYTNAGKSTLFNALTGADVYV 219
Query: 90 ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDA 149
A F TL D + ++L GR+V+ +D V
Sbjct: 220 ADQLFATL----------DPTTRRIELGD-----------GRKVLL----TDTV------ 248
Query: 150 SKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTL-PLTHVDEKLCYQILH 208
G + L L +F STL + D +LH
Sbjct: 249 ----GFIRDLPHPLVE----------------------AFKSTLEEVKEAD-----LLLH 277
Query: 209 EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR----QPN 264
+ E+L + + V+D++ I + + + V NKID++ +D + LA PN
Sbjct: 278 VVDASDPEILEKLE-AVEDVLAEIGADEIPI--ILVLNKIDLL--EDEEILAELERGSPN 332
Query: 265 SVVISCNLKLNLDRLLARM 283
V IS LD L R+
Sbjct: 333 PVFISAKTGEGLDLLRERI 351
|
Length = 411 |
| >gnl|CDD|234125 TIGR03156, GTP_HflX, GTP-binding protein HflX | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 4e-06
Identities = 53/222 (23%), Positives = 83/222 (37%), Gaps = 67/222 (30%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123
VAL+G+ + GKSTL LTG AA F TL D + LDLP
Sbjct: 191 TVALVGYTNAGKSTLFNALTGADVYAADQLFATL----------DPTTRRLDLPD----- 235
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183
G +V+ +D V G + L EL A
Sbjct: 236 ------GGEVLL----TDTV----------GFIRDLPHELVA------------------ 257
Query: 184 TGGISFNSTL-PLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242
+F +TL + D +LH + + + +A V+ +++ + +
Sbjct: 258 ----AFRATLEEVREAD-----LLLHVVDASDPDREEQIEA-VEKVLEELGAEDI--PQL 305
Query: 243 YVYNKIDVIGIDDVDKLARQ-PNSVVISCNLKLNLDRLLARM 283
VYNKID++ +++L P +V +S LD LL +
Sbjct: 306 LVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAI 347
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like) [Unknown function, General]. Length = 351 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 6e-06
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 23/101 (22%)
Query: 64 RVALIGFPSVGKSTLLTLLTG-----THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
++A+IG P+VGKSTL+ L G A TT I N K L+D G
Sbjct: 174 KIAIIGRPNVGKSTLVNALLGEERVIVSDIAG----TTRDSIDIPFERNGKKYTLIDTAG 229
Query: 119 IIEGASEGKGRGRQVI---AVSKS------SDIVLMVLDAS 150
I KG+ + + +V ++ +D+VL+VLDA+
Sbjct: 230 IRR-----KGKVTEGVEKYSVLRTLKAIERADVVLLVLDAT 265
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-06
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAA---SYEFTTLTCIPGIIHYNDTKIQLLDLPGI- 119
+V + G P+VGKS+LL L G + A TT I I ++L+D G+
Sbjct: 5 KVVIAGKPNVGKSSLLNALAG--RDRAIVSDIAGTTRDVIEEEIDLGGIPVRLIDTAGLR 62
Query: 120 -----IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRP 174
IE G R R+ I + +D+VL+V+DAS+ L +E + K+P
Sbjct: 63 ETEDEIE--KIGIERAREAI---EEADLVLLVVDASEG------LDEEDLEILELPAKKP 111
|
TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159 |
| >gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 27/115 (23%)
Query: 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG-----THSEAASYEFTTLTCIPGIIHYN 107
E E + ++A+IG P+VGKS+L+ + G A TT I +
Sbjct: 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAG----TTRDSIDIEFERD 224
Query: 108 DTKIQLLDLPGI-----IEGASEGKGRGRQVIAVSKS------SDIVLMVLDASK 151
K L+D GI I + E +V+++ +D+VL+V+DA++
Sbjct: 225 GRKYVLIDTAGIRRKGKITESVE-------KYSVARTLKAIERADVVLLVIDATE 272
|
Length = 444 |
| >gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 24/125 (19%)
Query: 64 RVALIGFPSVGKSTLLTLLTGT-HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122
++A++G P+VGKS+LL L + + + TT + G N I+LLD GI E
Sbjct: 205 KLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREH 264
Query: 123 ASE----GKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIY 178
A G + + I K +D+V+ VLDAS+ LTK+ + I
Sbjct: 265 ADFVERLGIEKSFKAI---KQADLVIYVLDASQP------LTKDDFLI----------ID 305
Query: 179 FKKKK 183
K K
Sbjct: 306 LNKSK 310
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442 |
| >gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 35/116 (30%), Positives = 53/116 (45%), Gaps = 12/116 (10%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121
VA++G P+VGKSTL LTG +A + T G + + L+D GI E
Sbjct: 1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEE 59
Query: 122 GASEGKGRGR-QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG--LRLNKRP 174
+ R Q + +D++L V+D R+ LT E E + LR + +P
Sbjct: 60 DDDGLDKQIREQAEIAIEEADVILFVVDG------REGLTPEDEEIAKWLRKSGKP 109
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429 |
| >gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 39/143 (27%)
Query: 27 LGQLKAKIAKLRTQLLEPPKGSSGAG----EGFEVTKFGHGRVALIGFPSVGKSTLLTLL 82
++ K+ +L +L S+ G EG +V + G P+VGKS+LL L
Sbjct: 185 DEKILEKLEELIAELEAL-LASARQGEILREGL--------KVVIAGRPNVGKSSLLNAL 235
Query: 83 TGTHSEAASYEFTTLTCIPG--------IIHYNDTKIQLLDLPGI------IEGASEGKG 128
G E A +T I G I+ + ++L+D GI +E G
Sbjct: 236 LG--EERA-----IVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVE--KIGIE 286
Query: 129 RGRQVIAVSKSSDIVLMVLDASK 151
R R+ I + +D+VL+VLDAS+
Sbjct: 287 RSREAI---EEADLVLLVLDASE 306
|
Length = 449 |
| >gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 40/158 (25%)
Query: 5 EKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAG----EGFEVTKF 60
E I+E+ E R + L +L A++ +L ++ G EG
Sbjct: 180 EDIEELVLEKIREK--------LEELIAELDELLA--------TAKQGKILREGL----- 218
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAA---SYEFTTLTCIPGIIHYNDTKIQLLDLP 117
+V +IG P+VGKS+LL L G + A TT I I+ N ++L+D
Sbjct: 219 ---KVVIIGRPNVGKSSLLNALLG--RDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTA 273
Query: 118 GIIEGAS----EGKGRGRQVIAVSKSSDIVLMVLDASK 151
GI E G R ++ I + +D+VL VLDAS+
Sbjct: 274 GIRETDDVVERIGIERAKKAI---EEADLVLFVLDASQ 308
|
Length = 454 |
| >gnl|CDD|240334 PTZ00258, PTZ00258, GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 31/94 (32%)
Query: 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN------------- 107
+ ++ ++G P+VGKST L A ++ F T I N
Sbjct: 20 NNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCT-------IDPNTARVNVPDERFDW 72
Query: 108 -----------DTKIQLLDLPGIIEGASEGKGRG 130
++ + D+ G+++GASEG+G G
Sbjct: 73 LCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLG 106
|
Length = 390 |
| >gnl|CDD|236563 PRK09554, feoB, ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 8/110 (7%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 122
+ LIG P+ GK+TL LTG ++ T+ G D ++ L+DLPG +
Sbjct: 6 IGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTT 65
Query: 123 ASEGKGRGRQVIA----VSKSSDIVLMVLDASKSEGHRQILTKELEAVGL 168
S Q IA +S +D+++ V+DAS E + LT +L +G+
Sbjct: 66 ISSQTSLDEQ-IACHYILSGDADLLINVVDASNLERN-LYLTLQLLELGI 113
|
Length = 772 |
| >gnl|CDD|232975 TIGR00437, feoB, ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-04
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 6/103 (5%)
Query: 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGASEG 126
G P+VGKSTL LTG + ++ T+ G + + I+++DLPGI + S
Sbjct: 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLE 60
Query: 127 KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQI-LTKELEAVGL 168
+ R + ++ D+V+ V+DAS E R + LT +L +G+
Sbjct: 61 EEVARDYLL-NEKPDLVVNVVDASNLE--RNLYLTLQLLELGI 100
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum [Transport and binding proteins, Cations and iron carrying compounds]. Length = 591 |
| >gnl|CDD|206687 cd01900, YchF, YchF GTPase | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 23/85 (27%)
Query: 68 IGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-P--GII------------HYNDTKI- 111
+G P+VGKSTL LT +++EAA+Y F T I P GI+ KI
Sbjct: 4 VGLPNVGKSTLFNALTKSNAEAANYPFCT---IEPNVGIVPVPDERLDKLAEIVKPKKIV 60
Query: 112 ----QLLDLPGIIEGASEGKGRGRQ 132
+ +D+ G+++GAS+G+G G +
Sbjct: 61 PATIEFVDIAGLVKGASKGEGLGNK 85
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. Length = 274 |
| >gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTHSEAAS-YEFTTLTCIPGIIHYNDTKIQLLDLPGI-I 120
G VA++G P+VGKSTLL L G S TT I GI ++I +D PG
Sbjct: 1 GFVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHE 60
Query: 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELE 164
+ S + ++ + D++L V+D+ + G + + +L+
Sbjct: 61 KKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQ 104
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270 |
| >gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-04
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI------IHYNDTKIQLLDLP 117
R ++G P+VGKSTL+ L G + PG+ I I+LLD P
Sbjct: 117 RAMVVGIPNVGKSTLINRLRGKKVAKVGNK-------PGVTRGQQWIRIGP-NIELLDTP 168
Query: 118 GI 119
GI
Sbjct: 169 GI 170
|
Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171 |
| >gnl|CDD|206666 cd01878, HflX, HflX GTPase family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-04
Identities = 36/130 (27%), Positives = 48/130 (36%), Gaps = 49/130 (37%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123
VAL+G+ + GKSTL LTG A F TL D + + LPG
Sbjct: 43 TVALVGYTNAGKSTLFNALTGADVLAEDQLFATL----------DPTTRRIKLPG----- 87
Query: 124 SEGKGRGRQVIAV-----------------------SKSSDIVLMVLDASKSEGHRQILT 160
GR+V+ +D++L V+DAS + QI T
Sbjct: 88 ------GREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDREEQIET 141
Query: 161 -----KELEA 165
KEL A
Sbjct: 142 VEEVLKELGA 151
|
HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. Length = 204 |
| >gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 3e-04
Identities = 38/124 (30%), Positives = 55/124 (44%), Gaps = 30/124 (24%)
Query: 3 IIEKIKEI-EAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFG 61
++EK KE+ E+E A E LG LR + E A +G V
Sbjct: 57 VLEKWKEVFESEGLPVVYVSARE-RLG-----TRILRRTIKEL------AIDGKPVI--- 101
Query: 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAAS-----YEFTTLTCIPGIIHYN-DTKIQLLD 115
V ++G+P VGKS+++ L G HS + S +T GI D+KI L+D
Sbjct: 102 ---VGVVGYPKVGKSSIINALKGRHSASTSPIPGSPGYTK-----GIQLVRIDSKIYLID 153
Query: 116 LPGI 119
PG+
Sbjct: 154 TPGV 157
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157 |
| >gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGII 120
RV ++G+P+VGKSTL+ L G + ++ TT GI D I LLD PGII
Sbjct: 134 RVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTK----GIQWIKLDDGIYLLDTPGII 188
|
Length = 322 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 5e-04
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 19/99 (19%)
Query: 64 RVALIGFPSVGKSTLLTLLTG-----THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
++A+IG P+VGKS+L+ L G A TT I + K L+D G
Sbjct: 175 KIAIIGRPNVGKSSLINALLGEERVIVSDIAG----TTRDSIDTPFERDGQKYTLIDTAG 230
Query: 119 I-----IEGASE--GKGRGRQVIAVSKSSDIVLMVLDAS 150
I + E R + I + +D+VL+V+DA+
Sbjct: 231 IRRKGKVTEGVEKYSVIRTLKAI---ERADVVLLVIDAT 266
|
Length = 435 |
| >gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 0.003
Identities = 36/117 (30%), Positives = 52/117 (44%), Gaps = 14/117 (11%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121
VA++G P+VGKSTL LTG +A A T I G + + L+D GI
Sbjct: 3 VVAIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEP 61
Query: 122 GAS--EGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVG--LRLNKRP 174
E + R Q + +D++L V+D R LT E + LR + +P
Sbjct: 62 DDDGFEKQIR-EQAELAIEEADVILFVVDG------RAGLTPADEEIAKILRKSNKP 111
|
Length = 435 |
| >gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Score = 39.0 bits (91), Expect = 0.003
Identities = 36/121 (29%), Positives = 57/121 (47%), Gaps = 17/121 (14%)
Query: 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAA---SYEFTTLTCIPGIIHYNDTKIQL 113
+T G RVAL+G P+VGKS+LL L TH E A TT + I+ +
Sbjct: 445 LTPSGLRRVALVGRPNVGKSSLLNQL--THEERAVVNDLAGTTRDPVDEIVEIDGEDWLF 502
Query: 114 LDLPGIIEGASEGKG-------RGRQVIAVSKSSDIVLMVLDASK--SEGHRQILTKELE 164
+D GI + G R + I + S++ L + DAS+ SE ++++ ++
Sbjct: 503 IDTAGIKRRQHKLTGAEYYSSLRTQAAI---ERSELALFLFDASQPISEQDLKVMSMAVD 559
Query: 165 A 165
A
Sbjct: 560 A 560
|
Length = 712 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| COG1163 | 365 | DRG Predicted GTPase [General function prediction | 100.0 | |
| KOG1486 | 364 | consensus GTP-binding protein DRG2 (ODN superfamil | 100.0 | |
| KOG1487 | 358 | consensus GTP-binding protein DRG1 (ODN superfamil | 100.0 | |
| cd01896 | 233 | DRG The developmentally regulated GTP-binding prot | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.97 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.96 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.96 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.96 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.95 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.95 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.95 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.95 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.95 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.95 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.95 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.95 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.94 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.94 | |
| PRK09602 | 396 | translation-associated GTPase; Reviewed | 99.94 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.93 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.93 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.93 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.93 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.93 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.93 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.92 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.92 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.92 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.92 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.92 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.92 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.92 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.92 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.92 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.92 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.92 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.92 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.92 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.92 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.92 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.92 | |
| PF02421 | 156 | FeoB_N: Ferrous iron transport protein B; InterPro | 99.92 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.92 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.92 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.92 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.92 | |
| PTZ00258 | 390 | GTP-binding protein; Provisional | 99.92 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.92 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.92 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.91 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.91 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.91 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.91 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.91 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.91 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.91 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.91 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.91 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.91 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.91 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.91 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.91 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.91 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.91 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.91 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.91 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.91 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.91 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.91 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.91 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.91 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.91 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.91 | |
| COG2262 | 411 | HflX GTPases [General function prediction only] | 99.91 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.91 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.91 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.91 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.91 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.91 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.91 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.91 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.91 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.91 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.9 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.9 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.9 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.9 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.9 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.9 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.9 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.9 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.9 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.9 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.9 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.9 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.9 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.9 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.9 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.9 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.9 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.9 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.9 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.9 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.9 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.9 | |
| COG1159 | 298 | Era GTPase [General function prediction only] | 99.9 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.9 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.9 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.9 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.9 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.9 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.9 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.9 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.9 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.89 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.89 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| KOG1489 | 366 | consensus Predicted GTP-binding protein (ODN super | 99.89 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.89 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.89 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.89 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.89 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.89 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.89 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.89 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.89 | |
| cd01899 | 318 | Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg | 99.89 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.89 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.89 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.89 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.89 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.89 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.89 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.89 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.89 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.89 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.89 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.89 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.89 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.89 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.89 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.89 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.89 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.89 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.89 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.89 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.88 | |
| COG0486 | 454 | ThdF Predicted GTPase [General function prediction | 99.88 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.88 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.88 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.88 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.88 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.88 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.88 | |
| TIGR03156 | 351 | GTP_HflX GTP-binding protein HflX. This protein fa | 99.88 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.88 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.88 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.88 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.88 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.88 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.88 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.88 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.88 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.88 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.88 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.88 | |
| PRK12298 | 390 | obgE GTPase CgtA; Reviewed | 99.88 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.88 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.88 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.88 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.88 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.88 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.88 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.88 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.88 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.88 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.88 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.88 | |
| COG0536 | 369 | Obg Predicted GTPase [General function prediction | 99.88 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.88 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.88 | |
| PRK12299 | 335 | obgE GTPase CgtA; Reviewed | 99.87 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.87 | |
| PRK12296 | 500 | obgE GTPase CgtA; Reviewed | 99.87 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.87 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.87 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.87 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.87 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.87 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.87 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.87 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.87 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.87 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.87 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.87 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.87 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.87 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.87 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.87 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.87 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.87 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.87 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.87 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.87 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| TIGR02729 | 329 | Obg_CgtA Obg family GTPase CgtA. This model descri | 99.87 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.87 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.87 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.87 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.87 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.87 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.87 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.87 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.87 | |
| PRK09601 | 364 | GTP-binding protein YchF; Reviewed | 99.86 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.86 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.86 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.86 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.86 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.86 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.86 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.86 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.86 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.86 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.86 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.86 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.86 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK12297 | 424 | obgE GTPase CgtA; Reviewed | 99.86 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.86 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.86 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.86 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.86 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.86 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.86 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.86 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.86 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.85 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.85 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.85 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.85 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.85 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.85 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.85 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.85 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.85 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.85 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.85 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| TIGR00436 | 270 | era GTP-binding protein Era. Era is an essential G | 99.85 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.85 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.85 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.85 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.85 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.85 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.85 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.85 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.85 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.85 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.85 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.85 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.84 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.84 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.84 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.84 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.84 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.84 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.84 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.84 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.84 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.84 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.84 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.84 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.84 | |
| PRK11058 | 426 | GTPase HflX; Provisional | 99.84 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.84 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.84 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.84 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.83 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.83 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.83 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.83 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.83 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.83 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.83 | |
| COG1160 | 444 | Predicted GTPases [General function prediction onl | 99.83 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 99.83 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.83 | |
| cd01898 | 170 | Obg Obg subfamily. The Obg nucleotide binding prot | 99.83 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.83 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.83 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.83 | |
| COG1084 | 346 | Predicted GTPase [General function prediction only | 99.83 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.83 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.83 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.83 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.83 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.82 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.82 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.82 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.82 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.82 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.82 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.82 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.82 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.82 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.82 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.82 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.82 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.82 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.81 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.81 | |
| COG0012 | 372 | Predicted GTPase, probable translation factor [Tra | 99.81 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.81 | |
| cd01881 | 176 | Obg_like The Obg-like subfamily consists of five w | 99.8 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.8 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.8 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.79 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.79 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.79 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.79 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.79 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.78 | |
| PRK15494 | 339 | era GTPase Era; Provisional | 99.78 | |
| PRK05291 | 449 | trmE tRNA modification GTPase TrmE; Reviewed | 99.78 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.78 | |
| COG0370 | 653 | FeoB Fe2+ transport system protein B [Inorganic io | 99.78 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.78 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.77 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.77 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.76 | |
| KOG1191 | 531 | consensus Mitochondrial GTPase [Translation, ribos | 99.76 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.76 | |
| PRK00089 | 292 | era GTPase Era; Reviewed | 99.76 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.76 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.76 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.75 | |
| cd01900 | 274 | YchF YchF subfamily. YchF is a member of the Obg f | 99.75 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.75 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.75 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.75 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.75 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.75 | |
| cd01897 | 168 | NOG NOG1 is a nucleolar GTP-binding protein presen | 99.75 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.74 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.74 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.74 | |
| cd04164 | 157 | trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein | 99.74 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.73 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.73 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.73 | |
| cd01879 | 158 | FeoB Ferrous iron transport protein B (FeoB) subfa | 99.72 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.72 | |
| PRK09554 | 772 | feoB ferrous iron transport protein B; Reviewed | 99.72 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.71 | |
| cd01894 | 157 | EngA1 EngA1 subfamily. This CD represents the firs | 99.71 | |
| TIGR00450 | 442 | mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE | 99.71 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.7 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.7 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.7 | |
| KOG1491 | 391 | consensus Predicted GTP-binding protein (ODN super | 99.69 | |
| PRK03003 | 472 | GTP-binding protein Der; Reviewed | 99.69 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.69 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.69 | |
| PRK00093 | 435 | GTP-binding protein Der; Reviewed | 99.68 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.68 | |
| PRK09518 | 712 | bifunctional cytidylate kinase/GTPase Der; Reviewe | 99.68 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.68 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.68 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.68 | |
| TIGR03594 | 429 | GTPase_EngA ribosome-associated GTPase EngA. EngA | 99.68 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 99.67 | |
| cd04163 | 168 | Era Era subfamily. Era (E. coli Ras-like protein) | 99.66 | |
| cd04171 | 164 | SelB SelB subfamily. SelB is an elongation factor | 99.66 | |
| COG0218 | 200 | Predicted GTPase [General function prediction only | 99.65 | |
| cd01895 | 174 | EngA2 EngA2 subfamily. This CD represents the seco | 99.64 | |
| TIGR00092 | 368 | GTP-binding protein YchF. This predicted GTP-bindi | 99.64 | |
| PRK04213 | 201 | GTP-binding protein; Provisional | 99.63 | |
| KOG0410 | 410 | consensus Predicted GTP binding protein [General f | 99.63 | |
| TIGR00437 | 591 | feoB ferrous iron transporter FeoB. FeoB (773 amin | 99.63 | |
| cd04160 | 167 | Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote | 99.63 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.62 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.62 | |
| cd01861 | 161 | Rab6 Rab6 subfamily. Rab6 is involved in microtubu | 99.61 | |
| KOG1423 | 379 | consensus Ras-like GTPase ERA [Cell cycle control, | 99.61 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.61 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.6 | |
| cd00880 | 163 | Era_like Era (E. coli Ras-like protein)-like. This | 99.6 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 99.6 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.6 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.6 | |
| cd00879 | 190 | Sar1 Sar1 subfamily. Sar1 is an essential componen | 99.59 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.59 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.59 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.58 | |
| TIGR00231 | 161 | small_GTP small GTP-binding protein domain. This m | 99.58 | |
| cd01889 | 192 | SelB_euk SelB subfamily. SelB is an elongation fac | 99.57 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.57 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.57 | |
| cd00881 | 189 | GTP_translation_factor GTP translation factor fami | 99.57 | |
| PRK15467 | 158 | ethanolamine utilization protein EutP; Provisional | 99.57 | |
| cd01887 | 168 | IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo | 99.56 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.56 | |
| TIGR03598 | 179 | GTPase_YsxC ribosome biogenesis GTP-binding protei | 99.56 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 99.55 | |
| cd04155 | 173 | Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f | 99.55 | |
| cd01868 | 165 | Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a | 99.55 | |
| cd04142 | 198 | RRP22 RRP22 subfamily. RRP22 (Ras-related protein | 99.55 | |
| cd04159 | 159 | Arl10_like Arl10-like subfamily. Arl9/Arl10 was id | 99.55 | |
| smart00178 | 184 | SAR Sar1p-like members of the Ras-family of small | 99.55 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.54 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.54 | |
| PF00009 | 188 | GTP_EFTU: Elongation factor Tu GTP binding domain; | 99.54 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 99.54 | |
| cd04157 | 162 | Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub | 99.54 | |
| PRK09866 | 741 | hypothetical protein; Provisional | 99.52 | |
| cd04151 | 158 | Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t | 99.52 | |
| cd01888 | 203 | eIF2_gamma eIF2-gamma (gamma subunit of initiation | 99.52 | |
| cd01862 | 172 | Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th | 99.52 | |
| cd04166 | 208 | CysN_ATPS CysN_ATPS subfamily. CysN, together with | 99.51 | |
| cd01869 | 166 | Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev | 99.51 | |
| smart00175 | 164 | RAB Rab subfamily of small GTPases. Rab GTPases ar | 99.51 | |
| cd04112 | 191 | Rab26 Rab26 subfamily. First identified in rat pan | 99.51 | |
| cd04145 | 164 | M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf | 99.51 | |
| cd04158 | 169 | ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor | 99.51 | |
| PF10662 | 143 | PduV-EutP: Ethanolamine utilisation - propanediol | 99.51 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.51 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.5 | |
| cd01864 | 165 | Rab19 Rab19 subfamily. Rab19 proteins are associat | 99.5 | |
| cd04138 | 162 | H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, | 99.5 | |
| cd04144 | 190 | Ras2 Ras2 subfamily. The Ras2 subfamily, found exc | 99.5 | |
| cd04154 | 173 | Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are | 99.5 | |
| cd04109 | 215 | Rab28 Rab28 subfamily. First identified in maize, | 99.5 | |
| cd00154 | 159 | Rab Rab family. Rab GTPases form the largest famil | 99.5 | |
| cd04153 | 174 | Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a | 99.5 | |
| cd00876 | 160 | Ras Ras family. The Ras family of the Ras superfam | 99.49 | |
| cd01866 | 168 | Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg | 99.49 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 99.49 | |
| cd01867 | 167 | Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp | 99.49 | |
| cd01863 | 161 | Rab18 Rab18 subfamily. Mammalian Rab18 is implicat | 99.49 | |
| cd01890 | 179 | LepA LepA subfamily. LepA belongs to the GTPase fa | 99.49 | |
| cd01865 | 165 | Rab3 Rab3 subfamily. The Rab3 subfamily contains R | 99.48 | |
| cd04114 | 169 | Rab30 Rab30 subfamily. Rab30 appears to be associa | 99.48 | |
| cd00878 | 158 | Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik | 99.47 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.47 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 99.47 | |
| cd01892 | 169 | Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr | 99.47 | |
| cd04136 | 163 | Rap_like Rap-like subfamily. The Rap subfamily con | 99.47 | |
| cd04139 | 164 | RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) | 99.46 | |
| TIGR02528 | 142 | EutP ethanolamine utilization protein, EutP. This | 99.46 |
| >COG1163 DRG Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-63 Score=436.61 Aligned_cols=316 Identities=57% Similarity=0.931 Sum_probs=300.6
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHH
Q 021103 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (317)
Q Consensus 1 ~~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln 80 (317)
||++|||+++|||++++|+||||++++.+|++|++++++|++.......+++.+|++.+++..+++|||+|++|||||||
T Consensus 2 ~tieEkIk~iEeeia~tpknKaTe~hig~lKaklA~Lr~El~~~~~~~gggg~gf~V~KsGda~v~lVGfPsvGKStLL~ 81 (365)
T COG1163 2 MTIEEKIKAIEEEIARTPKNKATEHHIGLLKAKLAELREELEKRKSKSGGGGSGFAVKKSGDATVALVGFPSVGKSTLLN 81 (365)
T ss_pred CCHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCcceEeccCCeEEEEEcCCCccHHHHHH
Confidence 89999999999999999999999999999999999999998775333333347999999999999999999999999999
Q ss_pred HHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHH
Q 021103 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (317)
Q Consensus 81 ~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~ 160 (317)
+|+|....+++|||||+.|.+|.+.++|.+|+++|+||++..+..+.+++.+.+...+.||++++++|........+.+.
T Consensus 82 ~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIiiVld~~~~~~~~~~i~ 161 (365)
T COG1163 82 KLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLIIIVLDVFEDPHHRDIIE 161 (365)
T ss_pred HHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCCcceeeeeeccCCEEEEEEecCCChhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887665577899
Q ss_pred HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceee
Q 021103 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (317)
Q Consensus 161 ~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p 240 (317)
+.|+..|+.+++.++......+.+.+|-+....|..++|++.++.+|++++..++.+.+..|.++++++|.+.+++.|+|
T Consensus 162 ~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p 241 (365)
T COG1163 162 RELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALEGNRVYKP 241 (365)
T ss_pred HHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHhhcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEeccceee
Q 021103 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 241 ~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v~ 316 (317)
+++|+||+|+.+.++++.+.+.++.+++||..++|+++|.+.||+.|+.+|||||+||..|++++|+|+++||||.
T Consensus 242 ~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~ 317 (365)
T COG1163 242 ALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVG 317 (365)
T ss_pred eEEEEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-56 Score=378.68 Aligned_cols=316 Identities=78% Similarity=1.209 Sum_probs=305.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHH
Q 021103 1 MGIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLT 80 (317)
Q Consensus 1 ~~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln 80 (317)
|+|.+||+++|+.++|.+|+|+|+.++..|+.++++++.++........+++.+|++.+.+..+|++||.|.+||||||.
T Consensus 1 MGIlekI~eIE~EmaRTQKNKaTEyHLGlLKaKlAkyR~qLlep~~~s~~kg~GFeV~KsGdaRValIGfPSVGKStlLs 80 (364)
T KOG1486|consen 1 MGILEKIKEIEAEMARTQKNKATEYHLGLLKAKLAKYRQQLLEPTKGSSGKGEGFEVLKSGDARVALIGFPSVGKSTLLS 80 (364)
T ss_pred CcHHHHHHHHHHHHHHhhhccchhHhHHHHHHHHHHHHHHhCCCCCCCCCCCCCeeeeccCCeEEEEecCCCccHHHHHH
Confidence 89999999999999999999999999999999999999998877766666789999999999999999999999999999
Q ss_pred HHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHH
Q 021103 81 LLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILT 160 (317)
Q Consensus 81 ~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~ 160 (317)
.|++.....++|.|||+.+.+|.+.++|..|+++|.||++..+.++.++++|.....+.+|++++++|+.....+.+.++
T Consensus 81 ~iT~T~SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~e~qr~~le 160 (364)
T KOG1486|consen 81 KITSTHSEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKSEDQREILE 160 (364)
T ss_pred HhhcchhhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988777777899
Q ss_pred HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceee
Q 021103 161 KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK 240 (317)
Q Consensus 161 ~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p 240 (317)
..|+.+|+++++++++++..++.-.++.+-..-|.+++|...+..+|.+++..++.+++..|.+.++++|.+.+++.|.+
T Consensus 161 ~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi~gnr~Y~~ 240 (364)
T KOG1486|consen 161 KELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVIEGNRVYIK 240 (364)
T ss_pred HHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHHhccceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEeccceee
Q 021103 241 CVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 241 ~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v~ 316 (317)
|++|.||+|.++.++++++.+.++.+.+||.-..|++.|++.||+.|..+|||||.+|..|++++|+|+++|+||.
T Consensus 241 ClYvYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve 316 (364)
T KOG1486|consen 241 CLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVE 316 (364)
T ss_pred EEEEeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-43 Score=302.08 Aligned_cols=304 Identities=60% Similarity=0.970 Sum_probs=285.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHH
Q 021103 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLL 82 (317)
Q Consensus 3 ~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L 82 (317)
+-+||+++|+.++|.+|+|+++.++..++.++++++.++.. ....+++.+|++..-+..+++++|.|.+|||||+.-|
T Consensus 2 ~~~ki~~ie~emaktqKNkat~~hlgllkaklaKlrreli~--~g~~g~~~gfDV~ktg~a~vg~vgFPSvGksTl~~~l 79 (358)
T KOG1487|consen 2 TLEKIKEIEDEMARTQKNKATSFHLGLLKAKLAKLRRELIT--GGGGGGGGGFDVAKTGDARVGFVGFPSVGKSTLLSKL 79 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhcc--CCCCCCCCCccceeecceeeeEEecCccchhhhhhhh
Confidence 66899999999999999999999999999999999988655 2222334578888877789999999999999999999
Q ss_pred hccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHH
Q 021103 83 TGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKE 162 (317)
Q Consensus 83 ~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~ 162 (317)
+|...+|+.|.|||+...+|.+.+.|..+++.|.||+++.+..+.+++.|.....+.+.+++.++|...+......++..
T Consensus 80 ~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviavartcnli~~vld~~kp~~hk~~ie~e 159 (358)
T KOG1487|consen 80 TGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVARTCNLIFIVLDVLKPLSHKKIIEKE 159 (358)
T ss_pred cCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEEEeecccEEEEEeeccCcccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888889999
Q ss_pred HHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeee
Q 021103 163 LEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242 (317)
Q Consensus 163 L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i 242 (317)
|+-||+++++.|+++-...|++.+|.+.. ++||.+.++.++.+++..++.+-.+-|.+.++++|.+.+++.|.|++
T Consensus 160 leg~girlnk~pp~i~~kkKdkgGInlt~----~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVegnr~yVp~i 235 (358)
T KOG1487|consen 160 LEGFGIRLNKQPPNIGTKKKDKGGINLTG----THLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVEGNRIYVPCI 235 (358)
T ss_pred hhcceeeccCCCCCccccccccCceeeec----chhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhccCceeeeee
Confidence 99999999999999999999999998877 68999999999999999999999999999999999999999999999
Q ss_pred EEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc
Q 021103 243 YVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV 312 (317)
Q Consensus 243 ~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 312 (317)
+++||+|-++.|+++.++..+..+++||+++||+|+|++.+++.+..+|+|||+.|..|+|..|++++.+
T Consensus 236 yvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~ 305 (358)
T KOG1487|consen 236 YVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSE 305 (358)
T ss_pred eeecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999984
|
|
| >cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=263.09 Aligned_cols=232 Identities=70% Similarity=1.136 Sum_probs=212.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|+||||||||+|+|+|....+++|||||+++..|.+.++|.+++++|+||+.+......++..+....++.+|.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~i 81 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLI 81 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHhhccCCEE
Confidence 68999999999999999999998789999999999999999999999999999998765544445566777788999999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|+.....+.+.+.+.|+.+|+.++++++.++...+.+.++.+....+..++|.+.++.+|++++..++.+.+.++.
T Consensus 82 l~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~ 161 (233)
T cd01896 82 LMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIREDI 161 (233)
T ss_pred EEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEccCC
Confidence 99999877666677889999999999999999999999999999998889999999999999999999999999999999
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEec
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTK 295 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~ 295 (317)
++++++|.+.+++.|.|+++|+||+|+...++.+.+.+.++.+++||+++.|++++.+.|++.|+.+|||||
T Consensus 162 ~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 162 TVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred CHHHHHHHHhCCceEeeEEEEEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence 999999999999999999999999999988877766666778999999999999999999999999999996
|
GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-32 Score=228.72 Aligned_cols=176 Identities=19% Similarity=0.181 Sum_probs=136.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+.++|+||+||||||||+||.++..+ ++|.|.++|..+.... . ....+...++++|
T Consensus 19 kgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~-----------~~G~I~i~g~~~~~~~--~-~~~~R~~vGmVFQ 84 (240)
T COG1126 19 KGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEP-----------DSGSITVDGEDVGDKK--D-ILKLRRKVGMVFQ 84 (240)
T ss_pred cCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCC-----------CCceEEECCEeccchh--h-HHHHHHhcCeecc
Confidence 567788888999999999999999999999999998 9999999997663221 1 1223455677788
Q ss_pred HHhhhccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.++++..++..+.- .....+..+.+.++|+++|+ ..+.+|.+||||||||++|| +++||||
T Consensus 85 ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPT 164 (240)
T COG1126 85 QFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPT 164 (240)
T ss_pred cccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCc
Confidence 8888887666544332 23344566778899999999 89999999999999999998 8899999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+|||+.+.++++-+ ...+ |.+++||+..+++-+ ...++.+++.-++
T Consensus 165 SALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V---------adrviFmd~G~ii 215 (240)
T COG1126 165 SALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV---------ADRVIFMDQGKII 215 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh---------hheEEEeeCCEEE
Confidence 999999877766655 4556 999999998776543 2345566655443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.8e-30 Score=228.48 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=144.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||||++|||||||++++.++..| ++|.|.++|.++..++-.+++. .++.+++.+|
T Consensus 23 ~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-----------tsG~v~v~G~di~~l~~~~Lr~-~R~~IGMIFQ 90 (339)
T COG1135 23 DDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERP-----------TSGSVFVDGQDLTALSEAELRQ-LRQKIGMIFQ 90 (339)
T ss_pred ccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCC-----------CCceEEEcCEecccCChHHHHH-HHhhccEEec
Confidence 578899999999999999999999999999999999 9999999999988777666644 4566778788
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+..+.. .+++.+.+... ...+..+++.++|+.+|+ +.+.+|.+||||||||++|| +++|||||
T Consensus 91 hFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTS 170 (339)
T COG1135 91 HFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170 (339)
T ss_pred cccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccc
Confidence 7776654 44555544332 234456789999999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc----ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhH
Q 021103 197 HVDEKLCYQILHEYK----IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 256 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~ 256 (317)
+|||++...+|+.+. ..+ |++++||.++ +.++|++ +.|+.+.-++..+..
T Consensus 171 ALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~r----------Vavm~~G~lvE~G~v 226 (339)
T COG1135 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDR----------VAVLDQGRLVEEGTV 226 (339)
T ss_pred cCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhh----------heEeeCCEEEEeccH
Confidence 999999877777665 234 9999999966 5566765 456666655544433
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-31 Score=227.10 Aligned_cols=169 Identities=20% Similarity=0.241 Sum_probs=126.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.++|+||+|||||||||+|.|+..| ++|.+.++|.++...+...........+++++|
T Consensus 22 ~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-----------t~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ 90 (226)
T COG1136 22 KDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-----------TSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQ 90 (226)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEcCcCCHHHHHHHHHHhEEEECc
Confidence 578888999999999999999999999999999998 899999999877654432222223344556666
Q ss_pred HHhhhccCcEEEEEe-----cCCCchhhHHHHHHHHHHccc--ccc-ccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLN-KRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~-----~~~~~~~~~~~~~~~L~~~~l--~~~-~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.+++...+...+. .........+.+..+++.+|+ ... ++|.+|||||+||++|| +++||||
T Consensus 91 ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPT 170 (226)
T COG1136 91 NFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPT 170 (226)
T ss_pred cCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCcc
Confidence 665555543332211 111111345567788888899 444 78999999999999999 8999999
Q ss_pred CCCCHHHHHHHHHHhc---cc-C-cEEEecCCCChhhHHHHH
Q 021103 196 THVDEKLCYQILHEYK---IH-N-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~~~~~~~~~ 232 (317)
.+||.++...+++.+. .. + |+|++|||+.++..+|++
T Consensus 171 gnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~ 212 (226)
T COG1136 171 GNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRV 212 (226)
T ss_pred ccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEE
Confidence 9999998666655554 22 4 999999999999877653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-30 Score=219.62 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=118.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||+|||||||||+|+|+..| .+|.|.++|.++. -| ....++++|
T Consensus 20 ~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p-----------~~G~V~~~g~~v~---~p------~~~~~~vFQ 79 (248)
T COG1116 20 EDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKP-----------TSGEVLLDGRPVT---GP------GPDIGYVFQ 79 (248)
T ss_pred ccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCcccC---CC------CCCEEEEec
Confidence 578889999999999999999999999999999998 8999999998761 11 122334445
Q ss_pred HHhhhc---cCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....++ ..+++.+.+... ...+..+++.++|+.+|+ ..+++|.+||||||||++|| ++||||++
T Consensus 80 ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFg 159 (248)
T COG1116 80 EDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFG 159 (248)
T ss_pred cCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 443333 356666655543 233345578999999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH----hccc-CcEEEecCCCChh
Q 021103 197 HVDEKLCYQILHE----YKIH-NAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~----l~~~-~~~i~~shd~~~~ 226 (317)
+||..+...+-+. .... .|+++||||.+.+
T Consensus 160 ALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EA 194 (248)
T COG1116 160 ALDALTREELQDELLRLWEETRKTVLLVTHDVDEA 194 (248)
T ss_pred hhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence 9999875444333 3333 4999999995433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=214.16 Aligned_cols=171 Identities=21% Similarity=0.223 Sum_probs=121.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+||||||||||+++|+|+..| .+|.|.+.|.++.... ..||.++... ..+
T Consensus 21 ~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p-----------~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~-~d~ 88 (254)
T COG1121 21 EDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKP-----------SSGEIKIFGKPVRKRRKRLRIGYVPQKSS-VDR 88 (254)
T ss_pred eccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----------CcceEEEccccccccccCCeEEEcCcccc-cCC
Confidence 578888999999999999999999999999999988 8999999887543221 2244333211 000
Q ss_pred HHHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 130 GRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.+. +...|++...... .....+.+.+.++|+++|+ ..++++.+|||||+||+.|| +++|
T Consensus 89 --~fP--~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLD 164 (254)
T COG1121 89 --SFP--ITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLD 164 (254)
T ss_pred --CCC--cCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEec
Confidence 000 0112222221111 1123356789999999999 78999999999999999988 9999
Q ss_pred CCCCCCCHHHH---HHHHHHhcccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 193 LPLTHVDEKLC---YQILHEYKIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 193 EPt~~LD~~~~---~~~l~~l~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
|||+++|+... .+++++++..+ +++++|||..... .+.+.++++||-
T Consensus 165 EP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~---------~~~D~vi~Ln~~ 215 (254)
T COG1121 165 EPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVM---------AYFDRVICLNRH 215 (254)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhH---------hhCCEEEEEcCe
Confidence 99999999874 55666666545 9999999954321 245668888875
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-29 Score=214.56 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=136.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.++++||+||||||+|++|.++..| ++|.|.++|.++.-.|... .+..++++-|
T Consensus 18 ~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep-----------t~G~I~i~g~~i~~~d~~~----LRr~IGYviQ 82 (309)
T COG1125 18 DDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP-----------TSGEILIDGEDISDLDPVE----LRRKIGYVIQ 82 (309)
T ss_pred eeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC-----------CCceEEECCeecccCCHHH----HHHhhhhhhh
Confidence 678999999999999999999999999999999988 9999999999987665432 3445677667
Q ss_pred HHhhhccC---cEEEEEecC--CCchhhHHHHHHHHHHccc----cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~~--~~~~~~~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
...++++. +++..+-.. .......+++.++|+.+|+ ..+++|.+|||||+||++++ ++||||
T Consensus 83 qigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEP 162 (309)
T COG1125 83 QIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162 (309)
T ss_pred hcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCC
Confidence 66666663 444444332 3344556789999999999 67899999999999999987 899999
Q ss_pred CCCCCHHHHHHHHHHhc----c-cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 195 LTHVDEKLCYQILHEYK----I-HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++|||-+..++-+++. . ..|+|++|||.+.+ .+ ...|.|+++.-+..
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kL----------adri~vm~~G~i~Q 216 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKL----------ADRIAVMDAGEIVQ 216 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhh----------hceEEEecCCeEEE
Confidence 99999998666655543 2 34999999995533 33 34577888876653
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-29 Score=228.04 Aligned_cols=183 Identities=21% Similarity=0.217 Sum_probs=144.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|||||||||||++|+|...| ++|.|.++|.++.- .| ...+.+++++|
T Consensus 22 ~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p-----------~~G~I~l~G~~i~~--lp----p~kR~ig~VFQ 84 (352)
T COG3842 22 DDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQP-----------SSGEILLDGEDITD--VP----PEKRPIGMVFQ 84 (352)
T ss_pred ecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCC--CC----hhhcccceeec
Confidence 578889999999999999999999999999999998 99999999998754 22 34567788889
Q ss_pred HHhhhcc---CcEEEEEecCCC--c-hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK--S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~--~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.+.++++ .+++.|.+.... . ....+++.++|+.+++ ..+++|.+|||||+||+++| +++|||+
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 8888877 456666655222 1 2345689999999999 88999999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 196 THVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
++||.....++..+++ ..+ |.|++|||.+.+-- -.+.|+|+|+.-+....+.++++.
T Consensus 165 SaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~---------msDrI~Vm~~G~I~Q~gtP~eiY~ 226 (352)
T COG3842 165 SALDAKLREQMRKELKELQRELGITFVYVTHDQEEALA---------MSDRIAVMNDGRIEQVGTPEEIYE 226 (352)
T ss_pred cchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhh---------hccceEEccCCceeecCCHHHHhh
Confidence 9999987666655553 334 89999999543321 245688999998776555555544
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-28 Score=223.98 Aligned_cols=183 Identities=19% Similarity=0.195 Sum_probs=140.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++++.|+.++|+||||||||||||+|+|+..| ++|.|.++|..++-+ ++..+++++++|
T Consensus 20 ~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~-----------~~G~I~i~g~~vt~l------~P~~R~iamVFQ 82 (338)
T COG3839 20 KDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEP-----------TSGEILIDGRDVTDL------PPEKRGIAMVFQ 82 (338)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCC------ChhHCCEEEEeC
Confidence 468899999999999999999999999999999998 999999999987542 224566778888
Q ss_pred HHhhhcc---CcEEEEEecCCC--chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~--~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+.++++ .+++.|.+.... .....+++.+..+.+++ .++++|.+|||||+||++++ +++|||+|
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 8777766 456666555432 33456788899999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 197 HVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
+||......+-.+++ ..+ |.|++|||...+-. -...|+|+|+.-+...+....++.
T Consensus 163 nLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmt---------ladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 163 NLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMT---------LADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHh---------hCCEEEEEeCCeeeecCChHHHhh
Confidence 999987555444443 233 99999999543321 245688999776665444444443
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=214.45 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=125.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+..|++++|+|||||||||||++|+|...| .+|.|.++|.++.-+.... .....++..|
T Consensus 19 ~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p-----------~~G~V~l~g~~i~~~~~ke----lAk~ia~vpQ 83 (258)
T COG1120 19 DDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKP-----------KSGEVLLDGKDIASLSPKE----LAKKLAYVPQ 83 (258)
T ss_pred ecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCCchhhcCHHH----HhhhEEEecc
Confidence 578888999999999999999999999999999988 8999999998875433211 1112223333
Q ss_pred HHh---hhccCcEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA---VSKSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .+...|++.+....+ ....+.+.+.+.|+.+++ ..++.+.+|||||+||+.|| +++|
T Consensus 84 ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLD 163 (258)
T COG1120 84 SPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLD 163 (258)
T ss_pred CCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeC
Confidence 321 122233333221111 123355578889999999 78899999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+....++++.+ . ..+ |+|++.||.+.+-. |...+++++...+.
T Consensus 164 EPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~r---------yad~~i~lk~G~i~ 218 (258)
T COG1120 164 EPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAAR---------YADHLILLKDGKIV 218 (258)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH---------hCCEEEEEECCeEE
Confidence 999999999866655554 4 334 89999999765531 45567777765443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-28 Score=233.71 Aligned_cols=197 Identities=15% Similarity=0.188 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhh------h-----c--CCCCCCC-CC-----------------
Q 021103 3 IIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQ------L-----L--EPPKGSS-GA----------------- 51 (317)
Q Consensus 3 ~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~------~-----~--~~~~~~~-~~----------------- 51 (317)
-|++++++++||+|+.+..++.++.....+++.+++.. . . .+...+. .+
T Consensus 256 ~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~~ 335 (530)
T COG0488 256 QQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGR 335 (530)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCCc
Confidence 47899999999999765443332222223333433311 0 0 1111110 11
Q ss_pred --CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 52 --GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 --~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
-.++++.+..|++|||+||||+||||||+.|+|...| .+|.|.++ ..+.+ ||+++......
T Consensus 336 ~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~-----------~~G~v~~g-~~v~i----gyf~Q~~~~l~- 398 (530)
T COG0488 336 LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGP-----------LSGTVKVG-ETVKI----GYFDQHRDELD- 398 (530)
T ss_pred eeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhccc-----------CCceEEeC-CceEE----EEEEehhhhcC-
Confidence 1478899999999999999999999999999999988 78999984 33332 33333221110
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
..-.++.++.+.. +......++.+|.+|+| ...+++..||||||.|+.+| |++|||||+
T Consensus 399 --------~~~t~~d~l~~~~-~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNh 469 (530)
T COG0488 399 --------PDKTVLEELSEGF-PDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNH 469 (530)
T ss_pred --------ccCcHHHHHHhhC-ccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCcc
Confidence 0001111111111 11125678999999999 67889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhc-ccCcEEEecCCCCh
Q 021103 198 VDEKLCYQILHEYK-IHNAEVLFREDATV 225 (317)
Q Consensus 198 LD~~~~~~~l~~l~-~~~~~i~~shd~~~ 225 (317)
||.+++..+.+.+. ..|++|+||||..+
T Consensus 470 LDi~s~~aLe~aL~~f~Gtvl~VSHDr~F 498 (530)
T COG0488 470 LDIESLEALEEALLDFEGTVLLVSHDRYF 498 (530)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEeCCHHH
Confidence 99999999988887 56799999999543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=201.91 Aligned_cols=162 Identities=20% Similarity=0.206 Sum_probs=128.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|+.+-|+||+|||||||+++|.+...| +.|.|.++|.++..+....+ +..+..++.++|
T Consensus 19 ~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-----------t~G~i~~~~~dl~~l~~~~i-P~LRR~IGvVFQ 86 (223)
T COG2884 19 RDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERP-----------TRGKILVNGHDLSRLKGREI-PFLRRQIGVVFQ 86 (223)
T ss_pred hCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcC-----------CCceEEECCeeccccccccc-chhhheeeeEee
Confidence 578888999999999999999999999999999998 89999999998865532211 123445666666
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
...++.+ +|++.+.+.. ..+..-.+++.+.|+.+|+ +++..|.+|||||+||++|| +++||||.
T Consensus 87 D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTG 166 (223)
T COG2884 87 DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTG 166 (223)
T ss_pred eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCC
Confidence 6655554 5555554433 3344556789999999999 88899999999999999999 89999999
Q ss_pred CCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
+|||+..+++++.+. ..| |+++.|||..+-
T Consensus 167 NLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 167 NLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred CCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 999998777666654 455 899999996644
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-28 Score=212.52 Aligned_cols=190 Identities=21% Similarity=0.232 Sum_probs=142.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
..++++.++.|+.+||+|||||||||||++|+|++.| +.|.|.++|..+ .|+... ......++.++
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p-----------~~G~I~~~~~~l--~D~~~~-~~~~R~VGfvF 83 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETP-----------DAGRIRLNGRVL--FDVSNL-AVRDRKVGFVF 83 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCC-----------CCceEEECCEec--cchhcc-chhhcceeEEE
Confidence 3578899999999999999999999999999999998 999999999843 233221 22344567777
Q ss_pred HHHhhhcc---CcEEEEEecCC----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.+..+++ +|+|.|.+... .......++.++|+.+.+ ..+++|.+|||||+||+++| |++||
T Consensus 84 Q~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDE 163 (345)
T COG1118 84 QHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDE 163 (345)
T ss_pred echhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecC
Confidence 87777665 56777765432 123345678888999998 78999999999999999998 99999
Q ss_pred CCCCCCHHHHHH---HHHHhccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCe
Q 021103 194 PLTHVDEKLCYQ---ILHEYKIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNS 265 (317)
Q Consensus 194 Pt~~LD~~~~~~---~l~~l~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~ 265 (317)
|+++||.....+ .|..+... + +.+++|||.+ ..++ .+.++|+|+.-+...+...+++..+++
T Consensus 164 Pf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~l----------adrvvvl~~G~Ieqvg~p~ev~~~P~s 231 (345)
T COG1118 164 PFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL----------ADRVVVLNQGRIEQVGPPDEVYDHPAS 231 (345)
T ss_pred CchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhh----------cceEEEecCCeeeeeCCHHHHhcCCCc
Confidence 999999987444 45555432 4 9999999944 4444 456889999876655555555555443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-28 Score=194.94 Aligned_cols=169 Identities=23% Similarity=0.224 Sum_probs=132.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+|||||+|||||||+-.|+|+..+ ++|+|++.|+++..+|.-+.........+.++|
T Consensus 27 ~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-----------ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQ 95 (228)
T COG4181 27 KGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDP-----------SSGEVRLLGQPLHKLDEDARAALRARHVGFVFQ 95 (228)
T ss_pred ecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCC-----------CCceEEEcCcchhhcCHHHHHHhhccceeEEEE
Confidence 466778888999999999999999999999999988 899999999998877765554444455666677
Q ss_pred HHhhhccCcEEEEEe-----cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSDIVLMVL-----DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~-----~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+..+++.+.+..+. ...........+.++|+++|+ ++..+|.+|||||+||++|| ++.||||.
T Consensus 96 SF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTG 175 (228)
T COG4181 96 SFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTG 175 (228)
T ss_pred eeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCC
Confidence 666666655444332 221123345568899999999 89999999999999999998 89999999
Q ss_pred CCCHHHHHHH---HHHhcc-cC-cEEEecCCCChhhHHHHH
Q 021103 197 HVDEKLCYQI---LHEYKI-HN-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~-~~-~~i~~shd~~~~~~~~~~ 232 (317)
+||.++-.++ +-.++. .+ |.|++|||+.++.-|++.
T Consensus 176 NLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 176 NLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred CcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhhe
Confidence 9999874444 444443 34 899999999999888764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=193.47 Aligned_cols=160 Identities=18% Similarity=0.170 Sum_probs=120.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
-.|++.+..|+++||+||+|||||||||.++|...| .+|.|.++|.+....+ +......+.+|
T Consensus 16 ~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-----------~~G~i~i~g~d~t~~~------P~~RPVSmlFQ 78 (231)
T COG3840 16 MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETP-----------ASGEILINGVDHTASP------PAERPVSMLFQ 78 (231)
T ss_pred EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCC-----------CCceEEEcCeecCcCC------cccCChhhhhh
Confidence 457788889999999999999999999999999998 8999999998865422 12333445555
Q ss_pred HHhhhccCc---EEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSD---IVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d---~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.-..+.+.+ ++-+.+... -...+++.+...+.++|+ ..++.|.+|||||+||+++| +++|||++
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFs 158 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFS 158 (231)
T ss_pred ccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchh
Confidence 544444433 333333221 123467788999999999 88999999999999999999 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~ 229 (317)
.|||....+++..+. . ..|++|+||.++ ...+.
T Consensus 159 ALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia 197 (231)
T COG3840 159 ALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIA 197 (231)
T ss_pred hcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhh
Confidence 999998776665543 2 239999999944 44443
|
|
| >PRK09602 translation-associated GTPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.5e-26 Score=214.71 Aligned_cols=248 Identities=23% Similarity=0.309 Sum_probs=167.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------C---CeeEEEecCCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGI 119 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~---g~~i~~~d~~g~ 119 (317)
+++|||.||+|||||||+|++....+++|||||++|..|.+.+ + ..+++++|+||+
T Consensus 3 kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl 82 (396)
T PRK09602 3 TIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGL 82 (396)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCc
Confidence 6999999999999999999999888999999999999998763 1 256789999999
Q ss_pred cccccCCchhHHHHHhhhccCcEEEEEecCCC---------------chhhHHHHHHHHHHccc-cccccCCccccccee
Q 021103 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKK 183 (317)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~---------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~q 183 (317)
.+....+.+.+.+++..++.+|++++++|... +..+.+.+...|....+ .+.+++..+.-..+
T Consensus 83 ~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~~~- 161 (396)
T PRK09602 83 VPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVEPGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRKAQ- 161 (396)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccCCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh-
Confidence 88777777778889999999999999998862 23345566666666433 22222222211000
Q ss_pred ee--eeEeeecCCCC--CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC-hhhHHH
Q 021103 184 TG--GISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDVDK 258 (317)
Q Consensus 184 r~--~ialilDEPt~--~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~~~~~~ 258 (317)
+. .+...+-+..+ +++...+.++|++.+.. +......+.++.++..... ...+|+++|+||+|... .+.+..
T Consensus 162 ~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~-~~~~~~~~~~~~~I~~~~l--~t~KPvI~VlNK~D~~~~~~~l~~ 238 (396)
T PRK09602 162 AEKFDIEEALAEQLSGLGINEEHVKEALRELGLP-EDPSKWTDEDLLELARELR--KISKPMVIAANKADLPPAEENIER 238 (396)
T ss_pred cCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCc-CcccCCCHHHHHHHHHhhh--hcCCCEEEEEEchhcccchHHHHH
Confidence 00 00000111122 55666677777655422 1122222223333333322 33699999999999874 333444
Q ss_pred Hhc--CCCeEEEeccccccHHH------------------------------------------------HHHHHHHHhC
Q 021103 259 LAR--QPNSVVISCNLKLNLDR------------------------------------------------LLARMWEEMG 288 (317)
Q Consensus 259 l~~--~~~~v~iSa~~~~~i~~------------------------------------------------l~~~i~~~l~ 288 (317)
+.+ +..++++||..+.++++ +.+.+++.|+
T Consensus 239 i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~~~~~~~i~~~~~~~L~ 318 (396)
T PRK09602 239 LKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGGTGVQEAINTAVFDLLD 318 (396)
T ss_pred HHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhC
Confidence 443 36689999999998765 3377889999
Q ss_pred eeEEEecCCCCC------CCCCCCEEEecccee
Q 021103 289 LVRVYTKPQGQQ------PDFTEPVVLSVVCYI 315 (317)
Q Consensus 289 ~~~~~~~~~~~~------~~~~~p~~~~~~~~v 315 (317)
.+++||..+... ++..+|+++++|+||
T Consensus 319 li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~ 351 (396)
T PRK09602 319 MIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTA 351 (396)
T ss_pred CEEEEecCcccccccccCcccceeEEECCCCCH
Confidence 999999765333 367889999999997
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-27 Score=201.15 Aligned_cols=175 Identities=19% Similarity=0.195 Sum_probs=118.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|+++||+|++|||||||.++|+|...| .+|.|.++|.++....-.. .......+++|
T Consensus 24 ~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p-----------~~G~I~~~G~~~~~~~~~~---~~~~~VQmVFQ 89 (252)
T COG1124 24 NNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKP-----------SSGSILLDGKPLAPKKRAK---AFYRPVQMVFQ 89 (252)
T ss_pred cceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC-----------CCceEEECCcccCccccch---hhccceeEEec
Confidence 688999999999999999999999999999999998 8999999996543211000 00111111222
Q ss_pred HHhh-hcc----CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAV-SKS----SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~-~~~----~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.... +.. .+.+.-.+.........+++.++|+.+|+ .++++|.+|||||+||++|| |++||||
T Consensus 90 Dp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEpt 169 (252)
T COG1124 90 DPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPT 169 (252)
T ss_pred CCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCch
Confidence 1110 000 00000011111122234458899999999 79999999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+||.....++++.+ +. .+ +.+++|||.. ++.+||+ +.|+...-++
T Consensus 170 SaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR----------i~Vm~~G~iv 221 (252)
T COG1124 170 SALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDR----------IAVMDNGQIV 221 (252)
T ss_pred hhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhh----------eeeeeCCeEE
Confidence 999998765555554 43 33 9999999954 4556655 5566655444
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-27 Score=201.62 Aligned_cols=171 Identities=20% Similarity=0.197 Sum_probs=127.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+..|+.|||||++||||||||++|.|+..+ ++|.|.++|.++.-.....+. ..+...++.+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~-----------t~G~i~~~g~~i~~~~~k~lr-~~r~~iGmIf 87 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDP-----------TSGEILFNGVQITKLKGKELR-KLRRDIGMIF 87 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCC-----------CcceEEecccchhccchHHHH-HHHHhceeEe
Confidence 3678899999999999999999999999999998777 899999999876543222121 1234455555
Q ss_pred HHHhhhccCcEEEEEecC-------------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSKSSDIVLMVLDA-------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~-------------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|.+.+.+..+++..++.+ .-...+...+.+.|+++|+ .+.++..+|||||+||++||
T Consensus 88 Q~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pk 167 (258)
T COG3638 88 QQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPK 167 (258)
T ss_pred ccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCC
Confidence 655555554443322211 1123466778899999999 78899999999999999999
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChh-hHHHHHhc
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVD-DLIDVIEG 234 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~-~~~~~~~~ 234 (317)
+++|||++.|||.+...+++.++ ..+ |+|+..|+.+++ +.|+++.+
T Consensus 168 iILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riig 220 (258)
T COG3638 168 IILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG 220 (258)
T ss_pred EEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheE
Confidence 88899999999999887777765 233 999999996654 55666544
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-27 Score=201.60 Aligned_cols=168 Identities=21% Similarity=0.212 Sum_probs=124.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.++|+|++|+|||||+++|.|+..| ++|+|.+.|.++........+. .+...+..+|
T Consensus 25 d~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-----------~~GeI~i~G~~i~~ls~~~~~~-ir~r~GvlFQ 92 (263)
T COG1127 25 DGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRP-----------DKGEILIDGEDIPQLSEEELYE-IRKRMGVLFQ 92 (263)
T ss_pred cCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCC-----------CCCeEEEcCcchhccCHHHHHH-HHhheeEEee
Confidence 678888899999999999999999999999999999 9999999998865433221111 2233455556
Q ss_pred HHhhhcc---CcEEEEEecCCC---chhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK---SEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~---~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
...++.. .|++.+.+..+. .....+.+..-|+.+|+ . .+++|.+|||||++|+++| +++|||
T Consensus 93 ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEP 172 (263)
T COG1127 93 QGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEP 172 (263)
T ss_pred ccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCC
Confidence 5555444 455555443321 22234456667889999 4 8899999999999999998 899999
Q ss_pred CCCCCHHH---HHHHHHHhcc-cC-cEEEecCC-CChhhHHHHH
Q 021103 195 LTHVDEKL---CYQILHEYKI-HN-AEVLFRED-ATVDDLIDVI 232 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~-~~-~~i~~shd-~~~~~~~~~~ 232 (317)
|+||||-. +.+++..++. .+ |+++|||| .++..+||++
T Consensus 173 tsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv 216 (263)
T COG1127 173 TSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRV 216 (263)
T ss_pred CCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceE
Confidence 99999986 4556666653 34 99999999 6666766654
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-27 Score=212.12 Aligned_cols=181 Identities=19% Similarity=0.154 Sum_probs=123.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+.+||+||||||||||+|+|+|...| ++|.|.++|.++.-- . .......++..+
T Consensus 22 ~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p-----------~~G~i~i~G~~~~~~-~----~~~~~~igy~~~ 85 (293)
T COG1131 22 DGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKP-----------TSGEILVLGYDVVKE-P----AKVRRRIGYVPQ 85 (293)
T ss_pred eceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEEcCEeCccC-H----HHHHhheEEEcc
Confidence 578899999999999999999999999999999998 899999999764210 0 000111111111
Q ss_pred HHh---hhccCcEEEEEecCCCc--hhhHHHHHHHHHHcccc--ccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIA---VSKSSDIVLMVLDASKS--EGHRQILTKELEAVGLR--LNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l~--~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
... .+...+++.++...... ....+.+.++|+.+++. .++++..||+|||||++|| +++||||+
T Consensus 86 ~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~ 165 (293)
T COG1131 86 EPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTS 165 (293)
T ss_pred CCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 111 11112222222222221 23456789999999993 4788999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcccC--cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 197 HVDEKLCYQI---LHEYKIHN--AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~--~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
|||+.....+ ++.+...+ +++++||. .+++.+|| .++++++.-++..+..+.+
T Consensus 166 GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d----------~v~il~~G~~~~~g~~~~l 224 (293)
T COG1131 166 GLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCD----------RVIILNDGKIIAEGTPEEL 224 (293)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCC----------EEEEEeCCEEEEeCCHHHH
Confidence 9999986554 55555443 89999999 44555454 4778888776654443333
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-26 Score=197.21 Aligned_cols=175 Identities=23% Similarity=0.198 Sum_probs=121.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+.++|+|+||||||||+++|+|+..| .+|.|.++|.++.. .++.. .+...++++
T Consensus 21 ~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p-----------~~G~v~~~g~~~~~~~~~~~----~~~~vG~Vf 85 (235)
T COG1122 21 KDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP-----------TSGEVLVDGLDTSSEKSLLE----LRQKVGLVF 85 (235)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC-----------CCCEEEECCeeccchhhHHH----hhcceEEEE
Confidence 577889999999999999999999999999999998 88999999887542 11100 111122222
Q ss_pred HHHh--hhc--cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--VSK--SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~~~--~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+. ..+-+.|.... ....+...++.++|+.+++ ..++.+..||||||||++|| +++|||
T Consensus 86 Qnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEP 165 (235)
T COG1122 86 QNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEP 165 (235)
T ss_pred ECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCC
Confidence 2111 000 01111222111 1223356678899999999 78999999999999999999 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ... + ++|++|||.+.... +...++++++.-+.
T Consensus 166 ta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~---------~ad~v~vl~~G~i~ 218 (235)
T COG1122 166 TAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLE---------YADRVVVLDDGKIL 218 (235)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh---------hCCEEEEEECCEEe
Confidence 9999999866665555 434 3 89999999543321 34567888876554
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-26 Score=201.36 Aligned_cols=163 Identities=17% Similarity=0.177 Sum_probs=133.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.+.+++++.|++.+|+|-+|||||||+++|.++..| ++|.|.++|.++.-++...++.-.++...+++
T Consensus 44 v~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiep-----------t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-----------TRGEILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred eccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCC-----------CCceEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 4678899999999999999999999999999999988 89999999999887777777666677788889
Q ss_pred HHHhhhccCcEE---EEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKSSDIV---LMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~~d~i---~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.+.++++..++ .|.+... ...+..+++.++|+.+|+ +.+++|.+|||||+||+++| +++|||+
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaF 192 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAF 192 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCch
Confidence 988888875444 4433322 234456778999999999 88999999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHh---c--ccCcEEEecCCCCh
Q 021103 196 THVDEKLCYQILHEY---K--IHNAEVLFREDATV 225 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~--~~~~~i~~shd~~~ 225 (317)
|.|||-...++-+++ + .+.|++++|||.+.
T Consensus 193 SALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE 227 (386)
T COG4175 193 SALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE 227 (386)
T ss_pred hhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 999998755544443 3 24599999999543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-27 Score=200.71 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=140.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++||||||||||||||+|+|.+.| ++|.|.++|.+++-.... ...+.++.+.+|
T Consensus 21 ~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P-----------~~G~v~~~G~~it~l~p~---~iar~Gi~RTFQ 86 (250)
T COG0411 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKP-----------SSGTVIFRGRDITGLPPH---RIARLGIARTFQ 86 (250)
T ss_pred eceeEEEcCCeEEEEECCCCCCceeeeeeecccccC-----------CCceEEECCcccCCCCHH---HHHhccceeecc
Confidence 688999999999999999999999999999999999 999999999987643321 123445556667
Q ss_pred HHhhhccCcEEEEEecC---------------C--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-----
Q 021103 133 VIAVSKSSDIVLMVLDA---------------S--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----- 188 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~---------------~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----- 188 (317)
....++...++..+.-+ . ......+++.++|+.+|+ ..+.+..+||+|+++++.||
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 66666655444322111 0 122345678889999999 78999999999999999988
Q ss_pred ----eeecCCCCCCCHHHHHHH---HHHhcc-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 ----FNSTLPLTHVDEKLCYQI---LHEYKI-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 ----lilDEPt~~LD~~~~~~~---l~~l~~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
|++|||.+||.+....++ +..+.. .+ +++++.||..+- .+ ...|+|++-..++.++..++
T Consensus 167 ~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l----------~dri~Vl~~G~~IAeG~P~e 236 (250)
T COG0411 167 QPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGL----------ADRIVVLNYGEVIAEGTPEE 236 (250)
T ss_pred CCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhh----------ccEEEeccCCcCcccCCHHH
Confidence 899999999999875554 555554 33 899999996543 43 45688999998887766665
Q ss_pred HhcCC
Q 021103 259 LARQP 263 (317)
Q Consensus 259 l~~~~ 263 (317)
+.+.+
T Consensus 237 V~~dp 241 (250)
T COG0411 237 VRNNP 241 (250)
T ss_pred HhcCH
Confidence 55443
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-26 Score=184.93 Aligned_cols=158 Identities=17% Similarity=0.169 Sum_probs=125.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+.+..|++++|.||+|||||||+++++.+.+| ++|.+.|.|.++.-.+.+.++. .+.+..|
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp-----------~~G~l~f~Ge~vs~~~pea~Rq----~VsY~~Q 84 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDVSTLKPEAYRQ----QVSYCAQ 84 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhccCC-----------CCceEEEcCccccccChHHHHH----HHHHHHc
Confidence 577888899999999999999999999999999998 9999999999987666554432 2334445
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
...++.+ .|+++|.........+...+.+.|+++++ .+.+++..|||||+||.+++ +++||||+.|
T Consensus 85 ~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsAL 164 (223)
T COG4619 85 TPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSAL 164 (223)
T ss_pred CccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhc
Confidence 4445543 57777766555444566778899999999 78999999999999999988 8999999999
Q ss_pred CHHHHH---HHHHHhc-ccC-cEEEecCCCCh
Q 021103 199 DEKLCY---QILHEYK-IHN-AEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~---~~l~~l~-~~~-~~i~~shd~~~ 225 (317)
|+.+.+ +++..+- ..+ +++.+|||.+-
T Consensus 165 D~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq 196 (223)
T COG4619 165 DESNKRNIEEMIHRYVREQNVAVLWITHDKDQ 196 (223)
T ss_pred ChhhHHHHHHHHHHHhhhhceEEEEEecChHH
Confidence 998744 4444443 334 99999999653
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-26 Score=191.95 Aligned_cols=179 Identities=15% Similarity=0.114 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR- 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~- 131 (317)
.+++|..+.|+++||+|+|||||||+|++|++++.| ++|.+.++|.+... |..+++. .++..+
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P-----------~~G~v~idg~d~~~-~p~~vrr----~IGVl~~ 82 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP-----------DSGKVTIDGVDTVR-DPSFVRR----KIGVLFG 82 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccC-----------CCceEEEeeccccc-ChHHHhh----hcceecC
Confidence 578999999999999999999999999999999988 99999999876532 1111110 010000
Q ss_pred --HHHhhhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 --QVIAVSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 --~~~~~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
-.+.-+...+++.++... ......+.++.++.+.+++ .+++++..+|.|+|||++|| +++|||||
T Consensus 83 e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~s 162 (245)
T COG4555 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTS 162 (245)
T ss_pred CcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCC
Confidence 001111111122221111 1223345677788888998 78999999999999999999 99999999
Q ss_pred CCCHHHH---HHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 197 HVDEKLC---YQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 197 ~LD~~~~---~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
|||.... .+++.+++..+ ++|+.||. ++++.+||+ ++|+.|..++-....+
T Consensus 163 GLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDr----------vivlh~Gevv~~gs~~ 218 (245)
T COG4555 163 GLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR----------VIVLHKGEVVLEGSIE 218 (245)
T ss_pred CccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhhe----------EEEEecCcEEEcCCHH
Confidence 9999874 45566666545 99999999 677778875 6677777666444333
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-26 Score=211.85 Aligned_cols=167 Identities=18% Similarity=0.187 Sum_probs=116.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| ++|.|.++|.++...+...+. ..+...++.+|
T Consensus 22 ~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-----------~~G~I~i~G~~i~~~~~~~l~-~~r~~Ig~v~Q 89 (343)
T TIGR02314 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TSGSVIVDGQDLTTLSNSELT-KARRQIGMIFQ 89 (343)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHHH-HHhcCEEEEEC
Confidence 578889999999999999999999999999999988 899999999876432211000 01122333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts 169 (343)
T TIGR02314 90 HFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 3222211 122221111 11122234567889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-C-cEEEecCCCCh-hhHHHH
Q 021103 197 HVDEKLCYQILHEYK---IH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
+||+.+...+++.+. .. + ++|++||+.+. .++||+
T Consensus 170 ~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~ 210 (343)
T TIGR02314 170 ALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDC 210 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999998766655554 22 4 99999999654 355544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-26 Score=208.54 Aligned_cols=163 Identities=17% Similarity=0.137 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++|.++..... ......++.+|
T Consensus 24 ~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-----------~~G~v~i~G~~~~~~~~-----~~~~~ig~v~q 87 (306)
T PRK13537 24 DGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHP-----------DAGSISLCGEPVPSRAR-----HARQRVGVVPQ 87 (306)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEecccchH-----HHHhcEEEEec
Confidence 578888889999999999999999999999999988 89999999987532110 00111122122
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... .........++.++++.+++ ..++++..||+||+||++|| +++||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~ 167 (306)
T PRK13537 88 FDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTT 167 (306)
T ss_pred cCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCc
Confidence 111111 1111111111 11112223456788899998 67889999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+ +.++...+ +++++||+.+ ++++||+
T Consensus 168 gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 168 GLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 9999986554 44444334 9999999954 5566654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-26 Score=208.45 Aligned_cols=163 Identities=15% Similarity=0.103 Sum_probs=110.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++.... . ......++..|
T Consensus 10 ~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~~q 73 (302)
T TIGR01188 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP-----------TSGTARVAGYDVVREP-R----KVRRSIGIVPQ 73 (302)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCH-H----HHHhhcEEecC
Confidence 578888999999999999999999999999999988 8999999997753210 0 00011111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++|+.+++ ..++++..||+||+||+++| +++||||+
T Consensus 74 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 74 YASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 111111 0111111111 11112233467789999999 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHH---HHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQIL---HEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l---~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+. ..+...+ ++|++||+.. +.++||+
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~ 193 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDR 193 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 99999865554 4444334 9999999954 4455543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-26 Score=212.20 Aligned_cols=172 Identities=20% Similarity=0.211 Sum_probs=122.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|||||||||||++|+|...| ++|.|.++|.++... + ......++++|
T Consensus 21 ~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~~~--~----~~~r~ig~v~Q 83 (356)
T PRK11650 21 KGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI-----------TSGEIWIGGRVVNEL--E----PADRDIAMVFQ 83 (356)
T ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--C----HHHCCEEEEeC
Confidence 478888989999999999999999999999999988 899999999876321 1 11223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ........+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s 163 (356)
T PRK11650 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163 (356)
T ss_pred CccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4333332 22332222211 112234567889999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---IH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+.+.+. .. + ++|++|||.. +..++| .++++++.-+.
T Consensus 164 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D----------~i~vl~~G~i~ 214 (356)
T PRK11650 164 NLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD----------RVVVMNGGVAE 214 (356)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEeCCEEE
Confidence 999998665555443 32 4 8999999954 444443 46677766554
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-26 Score=200.78 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 87 (216)
T TIGR00960 20 DNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKP-----------TRGKIRFNGQDLTRLRGREI-PFLRRHIGMVFQ 87 (216)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEehhhcChhHH-HHHHHhceEEec
Confidence 578889999999999999999999999999999888 89999999986532211000 000011111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++++.+++ ..++++.+|||||+||+.+| +++||||+
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 167 (216)
T TIGR00960 88 DHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTG 167 (216)
T ss_pred CccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 111111 1111111110 11112234567888999999 57888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEYK---I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+. . ..++|++|||.+. .+++|
T Consensus 168 ~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d 206 (216)
T TIGR00960 168 NLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRH 206 (216)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999998666555443 3 3489999999653 34443
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-26 Score=209.52 Aligned_cols=174 Identities=17% Similarity=0.126 Sum_probs=116.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| ++|.|.++|.++...+ .......++.+|
T Consensus 58 ~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-----------~~G~i~i~G~~~~~~~-----~~~~~~ig~v~q 121 (340)
T PRK13536 58 NGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP-----------DAGKITVLGVPVPARA-----RLARARIGVVPQ 121 (340)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CceEEEECCEECCcch-----HHHhccEEEEeC
Confidence 578889999999999999999999999999999988 8999999998753110 000111111111
Q ss_pred HHhhh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||++|| +++||||+
T Consensus 122 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~ 201 (340)
T PRK13536 122 FDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTT 201 (340)
T ss_pred CccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 11111 11111111100 11111223456678899998 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+.+. +...+ ++|++||+.+ ++++||+ ++++++.-+..
T Consensus 202 gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~----------i~il~~G~i~~ 252 (340)
T PRK13536 202 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR----------LCVLEAGRKIA 252 (340)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE----------EEEEECCEEEE
Confidence 9999986555444 43334 9999999954 4555554 55666655443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.4e-26 Score=211.95 Aligned_cols=177 Identities=14% Similarity=0.126 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|++..|+.++|+|+||||||||+++|+|...| ++|.|.++|.++...+...+....+...++.+|
T Consensus 10 ~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-----------~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q 78 (363)
T TIGR01186 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP-----------TAGQIFIDGENIMKQSPVELREVRRKKIGMVFQ 78 (363)
T ss_pred EeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHHHHHHhCcEEEEEC
Confidence 578899999999999999999999999999999988 899999999876533221110000223333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 79 ~~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 79 QFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 3333322 122222111 11122234567889999999 68999999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+.....+.+.+ .. ..|+|++|||.+ +..++| .+++++..-+
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~d----------rI~vl~~G~i 208 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGD----------RIVIMKAGEI 208 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEeCCEE
Confidence 99999866665554 32 349999999965 445444 4556665543
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=194.60 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.... .....++.+|
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-------~~~~i~~~~q 78 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKE-----------SSGSILLNGKPIKAKE-------RRKSIGYVMQ 78 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEhhhHH-------hhcceEEEec
Confidence 577888889999999999999999999999999888 8999999997652100 0011111111
Q ss_pred HH----hhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VI----AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~----~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.. ......+++.+...... .....+.++++.+++ ..++++..||+||+||+.+| +++||||++
T Consensus 79 ~~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 156 (205)
T cd03226 79 DVDYQLFTDSVREELLLGLKELD--AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156 (205)
T ss_pred ChhhhhhhccHHHHHhhhhhhcC--ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCcc
Confidence 10 00111222221111111 122467888999999 67889999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+. .. .++|++||+.. +.+++|
T Consensus 157 LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d 194 (205)
T cd03226 157 LDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCD 194 (205)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 99998655544443 33 48999999954 334443
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-26 Score=199.66 Aligned_cols=166 Identities=23% Similarity=0.183 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 84 (235)
T cd03261 17 KGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRP-----------DSGEVLIDGEDISGLSEAEL-YRLRRRMGMLFQ 84 (235)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccChhhH-HHHhcceEEEcc
Confidence 578899999999999999999999999999999988 89999999987543211000 000111222222
Q ss_pred HHhhhc---cCcEEEEEecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..|||||+||+.|| +++||||
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt 164 (235)
T cd03261 85 SGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164 (235)
T ss_pred CcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 111111 11111111110 1112223457788999998 56888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ .. ..++|++|||.. +..++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d 205 (235)
T cd03261 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIAD 205 (235)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcC
Confidence 999999866555444 33 349999999965 344443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-26 Score=189.94 Aligned_cols=169 Identities=19% Similarity=0.129 Sum_probs=120.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--cCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..+.+.|||||+||||||||+++......+ |+. ...|.|.++|.+|.-. |... .+...+++
T Consensus 24 ~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~---~~~---r~~G~v~~~g~ni~~~~~d~~~----lRr~vGMV 93 (253)
T COG1117 24 KDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLI---PGA---RVEGEVLLDGKNIYDPKVDVVE----LRRRVGMV 93 (253)
T ss_pred ccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccC---cCc---eEEEEEEECCeeccCCCCCHHH----HHHHheee
Confidence 5677788889999999999999999999998876442 111 1679999999987432 2211 23344555
Q ss_pred HHHHhhhc--cCcEEEEEecCCC--chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 131 RQVIAVSK--SSDIVLMVLDASK--SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 131 ~~~~~~~~--~~d~i~~v~~~~~--~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+|....++ -.|++.+...... .....+.++..|....+ ++++....|||||+||++|| |+|
T Consensus 94 FQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 94 FQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred ccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 55444333 2455655544332 12334556777777766 67788899999999999998 999
Q ss_pred cCCCCCCCHHH---HHHHHHHhcccCcEEEecCCC-ChhhHHHH
Q 021103 192 TLPLTHVDEKL---CYQILHEYKIHNAEVLFREDA-TVDDLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~-~~~~~~~~ 231 (317)
|||||+|||.+ +++++.+++..-|+++|||+. ...++.|+
T Consensus 174 DEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~ 217 (253)
T COG1117 174 DEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDY 217 (253)
T ss_pred cCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHh
Confidence 99999999987 667788888666999999994 45555554
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-26 Score=197.91 Aligned_cols=167 Identities=22% Similarity=0.266 Sum_probs=110.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++..|
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 89 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP-----------TSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQ 89 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC-----------CceeEEECCEehhhcchhHHHHHHhhcEEEEee
Confidence 578889999999999999999999999999999988 899999999876432210000000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. ...........+.++++.+++ ..++++.+||+||+||+++| +++||||+
T Consensus 90 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (218)
T cd03255 90 SFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTG 169 (218)
T ss_pred ccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcc
Confidence 111111 111111111 011111223467788999998 56888999999999999988 99999999
Q ss_pred CCCHHHHHHHHH---Hhcc-cC-cEEEecCCCChhhHHH
Q 021103 197 HVDEKLCYQILH---EYKI-HN-AEVLFREDATVDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~-~~-~~i~~shd~~~~~~~~ 230 (317)
+||+.....+.+ .+.. .+ ++|++||+.+..+.+|
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d 208 (218)
T cd03255 170 NLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYAD 208 (218)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 999998655544 4433 24 8999999965444443
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.5e-26 Score=196.83 Aligned_cols=163 Identities=21% Similarity=0.204 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..|
T Consensus 18 ~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (211)
T cd03225 18 DDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGP-----------TSGEVLVDGKDLTKLSLKE----LRRKVGLVFQ 82 (211)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEcccCCHHH----HHhhceEEec
Confidence 578889999999999999999999999999999888 8999999997654211100 0011111111
Q ss_pred HHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 83 ~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt 162 (211)
T cd03225 83 NPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPT 162 (211)
T ss_pred ChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 110 00 11111111110 01111223457788999998 57889999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ ...+ ++|++||+.. +..++|
T Consensus 163 ~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 202 (211)
T cd03225 163 AGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELAD 202 (211)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999866655544 3334 8999999954 333343
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-26 Score=211.31 Aligned_cols=172 Identities=20% Similarity=0.188 Sum_probs=124.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| ++|.|.++|.++.- .+ ......++.+|
T Consensus 23 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~vfQ 85 (351)
T PRK11432 23 DNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKP-----------TEGQIFIDGEDVTH--RS----IQQRDICMVFQ 85 (351)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 468888999999999999999999999999999988 89999999987632 11 11233444445
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+++ .+++.+.+.. .......+++.++++.+++ ..++++..|||||+||++|| +++|||++
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 4444433 2333332221 1122334577889999999 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+...+. . ..++|++|||.+. ..++| .++|++..-+.
T Consensus 166 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD----------~i~vm~~G~i~ 216 (351)
T PRK11432 166 NLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSD----------TVIVMNKGKIM 216 (351)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999998666555443 2 2399999999653 34444 46677766554
|
|
| >PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.6e-24 Score=176.18 Aligned_cols=148 Identities=30% Similarity=0.442 Sum_probs=106.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d~ 142 (317)
+||++|.||+|||||||+|+|....++||||+|++...|.+.+++.++.++|+||+++....... ......-.....|+
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ 81 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDL 81 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCE
Confidence 68999999999999999999999889999999999999999999999999999998765433221 12112222467999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|+...........+++
T Consensus 82 ii~VvDa~~l~r~l~l~~ql~----------------------------------------------------------- 102 (156)
T PF02421_consen 82 IIVVVDATNLERNLYLTLQLL----------------------------------------------------------- 102 (156)
T ss_dssp EEEEEEGGGHHHHHHHHHHHH-----------------------------------------------------------
T ss_pred EEEECCCCCHHHHHHHHHHHH-----------------------------------------------------------
Confidence 999999865322211111111
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
....|+++|+||+|..... +.+.+.+ ..+++++||+++.|+++|.+.|
T Consensus 103 -------------e~g~P~vvvlN~~D~a~~~g~~id~~~Ls~~Lg~pvi~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 103 -------------ELGIPVVVVLNKMDEAERKGIEIDAEKLSERLGVPVIPVSARTGEGIDELKDAI 156 (156)
T ss_dssp -------------HTTSSEEEEEETHHHHHHTTEEE-HHHHHHHHTS-EEEEBTTTTBTHHHHHHHH
T ss_pred -------------HcCCCEEEEEeCHHHHHHcCCEECHHHHHHHhCCCEEEEEeCCCcCHHHHHhhC
Confidence 0148999999999987542 1233332 2469999999999999999876
|
FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B .... |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-26 Score=197.48 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=109.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 86 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTP-----------SRGQVRIAGEDVNRLRGRQL-PLLRRRIGVVFQ 86 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHH-HHHHhheEEEec
Confidence 578899999999999999999999999999999887 89999999987642210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++.+.+||+||+||+++| +++||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~ 166 (214)
T TIGR02673 87 DFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTG 166 (214)
T ss_pred ChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcc
Confidence 1111110 111111100 01112234567788999998 56788999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+.. +..++|
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 205 (214)
T TIGR02673 167 NLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAH 205 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999866555544 33 349999999954 334443
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-25 Score=208.70 Aligned_cols=172 Identities=20% Similarity=0.226 Sum_probs=123.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|||||||||||++|+|...| ++|.|.++|.++.. .+ ......++.+|
T Consensus 21 ~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~--~~----~~~r~ig~v~Q 83 (353)
T TIGR03265 21 KDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQ-----------TAGTIYQGGRDITR--LP----PQKRDYGIVFQ 83 (353)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 468888889999999999999999999999999988 89999999987632 11 11223444444
Q ss_pred HHhhhccC---cEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSS---DIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+++. +++.+..... .......++.++++.+++ .+++++.+|||||+||+++| +++|||++
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 44443332 2222222111 122234578889999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+.+.+. . .+ ++|++|||.. +..++| .++++++..+.
T Consensus 164 ~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d----------~i~vl~~G~i~ 214 (353)
T TIGR03265 164 ALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMAD----------RIVVMNHGVIE 214 (353)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999988666555443 2 24 8999999965 344444 46777776654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-25 Score=203.50 Aligned_cols=163 Identities=17% Similarity=0.087 Sum_probs=109.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++.... .......++.+|
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~v~q 84 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISP-----------DRGKITVLGEPVPSRA-----RLARVAIGVVPQ 84 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECcccH-----HHHhhcEEEEec
Confidence 578889999999999999999999999999999988 8999999997652110 000111111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. ...........+.++++.+++ ..++++..|||||+||+.+| +++||||+
T Consensus 85 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (303)
T TIGR01288 85 FDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTT 164 (303)
T ss_pred cccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 111111 111111100 011111223456678888998 56889999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+.+.+ ...+ ++|++||+.. +.++||+
T Consensus 165 gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~ 204 (303)
T TIGR01288 165 GLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDR 204 (303)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 99999866554444 3334 9999999954 4455543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-26 Score=190.06 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=135.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+.+.+|++|||+|||||||||.|.+++|+..| ++|.|.++|.+++... ....++.+.++..|
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~-----------d~G~i~ld~~diT~lP---m~~RArlGigYLpQ 86 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRP-----------DSGKILLDDEDITKLP---MHKRARLGIGYLPQ 86 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEec-----------CCceEEECCcccccCC---hHHHhhcCcccccc
Confidence 578889999999999999999999999999999988 9999999999887543 23445667777777
Q ss_pred HHhhhcc---CcEEEEEecCCC----chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVLDASK----SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~----~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
..+.|+. .|++..++.... ....+..+.++|+.|.+ ..+++..+|||||++|+.|| +++|||
T Consensus 87 E~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEP 166 (243)
T COG1137 87 EASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEP 166 (243)
T ss_pred cchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCC
Confidence 7666665 344544443322 12334457799999999 67888999999999999998 899999
Q ss_pred CCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 195 LTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
++|.||.+ ++.++..++..+ .+++..|+ .+.-++||+ .+++....+...+.
T Consensus 167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dR----------aYIi~~G~vla~G~ 222 (243)
T COG1137 167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDR----------AYIISDGKVLAEGS 222 (243)
T ss_pred ccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhhe----------EEEEecCeEEecCC
Confidence 99999987 566677777777 88888898 344455553 44555555544333
|
|
| >PTZ00258 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.8e-24 Score=198.97 Aligned_cols=240 Identities=20% Similarity=0.271 Sum_probs=158.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
+.++||||.||+|||||||+|++....+++|||||++|..|.+.+.+ .++.++|+||+.....
T Consensus 21 ~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~ 100 (390)
T PTZ00258 21 NLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGAS 100 (390)
T ss_pred CcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCc
Confidence 56899999999999999999999988899999999999999998763 3489999999998777
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccc-eeeeeeEee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKK-KKTGGISFN 190 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~-~qr~~iali 190 (317)
.+.+...+++..++.+|++++++|... +..+.+.+...|....+ .+.++...++... .++.
T Consensus 101 ~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~----- 175 (390)
T PTZ00258 101 EGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKK----- 175 (390)
T ss_pred chhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccc-----
Confidence 666777888899999999999998741 23344556666665555 2333332222110 0000
Q ss_pred ecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhH--HHHHhcccceeeeeEEEecc--cCC--ChhhHHHHhc---
Q 021103 191 STLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDL--IDVIEGNRKYMKCVYVYNKI--DVI--GIDDVDKLAR--- 261 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~--~~~~~~~~~~~p~i~v~NK~--D~~--~~~~~~~l~~--- 261 (317)
++...--......+.+.+.....+ -..+++.++. +..+ .....+|+++|+|+. |+. ..+.++.+.+
T Consensus 176 --~~~~~~~~~~l~~v~~~L~~~~~~--~~~~~~~~e~~~l~~l-~llt~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~ 250 (390)
T PTZ00258 176 --KKEEKVELDVLKKVLEWLEEGKPV--RDGDWTDKEIEILNEY-QLLTAKPMIYLVNMSEKDFIRQKNKWLAKIKEWVG 250 (390)
T ss_pred --hhhHHHHHHHHHHHHHHHHcCCcc--ccCCCCHHHHHHHHHh-chhhcCCEEEEEECchhhhcccchHHHHHHHHHHH
Confidence 000000001122333333321111 0112232221 1111 124579999999999 862 3333333332
Q ss_pred ---CCCeEEEeccccc-----------------------cHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 262 ---QPNSVVISCNLKL-----------------------NLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 262 ---~~~~v~iSa~~~~-----------------------~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...++++||..+. +++++.+.+++.|+.+++||..| +..+|+++++|+|+
T Consensus 251 ~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~----~e~raw~i~~Gsta 326 (390)
T PTZ00258 251 EKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGP----DEVRCWTIQKGTKA 326 (390)
T ss_pred hcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCC----CceeEEEeCCCCcH
Confidence 2358889986664 89999999999999999999665 34479999999996
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-25 Score=194.94 Aligned_cols=161 Identities=22% Similarity=0.226 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ .. ....++..|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~--~~----~~~i~~v~q 79 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERP-----------DSGEILIDGRDVTGVP--PE----RRNIGMVFQ 79 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcCcCc--hh----hccEEEEcC
Confidence 578889999999999999999999999999999888 8999999998653211 00 111122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.... .......+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 211111 11222111111 1112233457788999998 56888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 199 (213)
T cd03259 160 ALDAKLREELREELKELQRELGITTIYVTHDQEEALALAD 199 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcC
Confidence 999998666555443 2 238999999965 344444
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=217.08 Aligned_cols=153 Identities=18% Similarity=0.204 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++ +..+.+++.... .......
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~~~~~igy~~Q~~~-----~~l~~~~ 392 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAP-----------VSGEIGLAKGIKLGYFAQHQL-----EFLRADE 392 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCCEEEEEecCcch-----hhCCccc
Confidence 578899999999999999999999999999999988 88999985 334444332100 0000000
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
.....+. .. ........+.++|+.+++ ..++++..|||||+||+.|| +++||||++||
T Consensus 393 ~~~~~~~---------~~-~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 393 SPLQHLA---------RL-APQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred hHHHHHH---------Hh-CchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 0011010 00 111223467889999998 46789999999999999998 99999999999
Q ss_pred HHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 200 EKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 200 ~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+.....+.+.+.. .+++|++|||.. +..+|++
T Consensus 463 ~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~ 496 (638)
T PRK10636 463 LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDD 496 (638)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCE
Confidence 9987777666653 459999999954 4444443
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-25 Score=189.31 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=123.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--cCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--DLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--d~~g~~~~~~~~~~~~ 130 (317)
.+++|.+++|++.|++|+|||||||.|++|+|.+.| ++|.|.|+|.++... |..||.+..
T Consensus 19 ~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~-----------~~G~I~~~g~~~~~~~~~rIGyLPEE------- 80 (300)
T COG4152 19 DNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP-----------TEGEITWNGGPLSQEIKNRIGYLPEE------- 80 (300)
T ss_pred cceeeeecCCeEEEeecCCCCCccchHHHHhccCCc-----------cCceEEEcCcchhhhhhhhcccChhh-------
Confidence 688999999999999999999999999999999988 899999999876432 334554322
Q ss_pred HHHHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 131 RQVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
..+++. .|.+.|.. .+....+....+..+|+++++ ...+++.+||.|++|++.+. +++|||
T Consensus 81 ---RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEP 157 (300)
T COG4152 81 ---RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEP 157 (300)
T ss_pred ---hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCC
Confidence 111111 12222222 223334456678899999999 78889999999999999764 999999
Q ss_pred CCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhc
Q 021103 195 LTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 195 t~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~ 234 (317)
+|||||-+ .++.+.+++..| |+|++||. ..++++||.+..
T Consensus 158 FSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llm 202 (300)
T COG4152 158 FSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLM 202 (300)
T ss_pred ccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhhe
Confidence 99999976 456666777666 99999999 668899998643
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-25 Score=207.28 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+||||||||||+++|+|...| ++|.|.++|.++...+ ......++.+|
T Consensus 19 ~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~~~------~~~r~i~~v~Q 81 (353)
T PRK10851 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQ-----------TSGHIRFHGTDVSRLH------ARDRKVGFVFQ 81 (353)
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCC------HHHCCEEEEec
Confidence 478899999999999999999999999999999988 8999999998763211 11122333334
Q ss_pred HHhhhcc---CcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS---SDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+.. .+++.+.... .......+.+.++|+.+++ ..++++.+|||||+||++|| +++|
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3322222 2223222211 1112234567889999999 67899999999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ... + ++|++|||.. +..++| .++++++..+.
T Consensus 162 EP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D----------ri~vl~~G~i~ 216 (353)
T PRK10851 162 EPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD----------RVVVMSQGNIE 216 (353)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866555444 332 4 9999999965 344443 46677766554
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-26 Score=196.08 Aligned_cols=162 Identities=20% Similarity=0.174 Sum_probs=107.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. ....++..+.........
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~ 84 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKP-----------TSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFP 84 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCccHHHHHhheEEeccccccccCCC
Confidence 578888889999999999999999999999999888 89999999865310 000111111100000000
Q ss_pred HHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+++.+.... .......+.+.++++.+++ ..++++.+||+||+||+++| +++|||
T Consensus 85 -----~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 85 -----ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred -----CcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 0001111110000 0112234567888999999 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+ ... .++|++||+.+ +.+++|
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d 200 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFD 200 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 9999999866555544 323 48999999965 344444
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-25 Score=207.73 Aligned_cols=173 Identities=20% Similarity=0.178 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee--EEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~--G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+|||||||||||++|+|...| .+ |.|.++|.++. +.+ ......++.
T Consensus 22 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~~~G~i~~~g~~~~--~~~----~~~r~ig~v 84 (362)
T TIGR03258 22 DDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKA-----------AGLTGRIAIADRDLT--HAP----PHKRGLALL 84 (362)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCCEEEEECCEECC--CCC----HHHCCEEEE
Confidence 578888889999999999999999999999999988 78 99999998753 111 111233334
Q ss_pred HHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 131 RQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+|....+.. .+++.+..... .......++.++++.+++ ..++++.+|||||+||+++| +++|||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 443333322 22222222111 112234567889999999 68899999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---ccc--C-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCC
Q 021103 195 LTHVDEKLCYQILHEY---KIH--N-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~--~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|++||+.....+.+.+ ... + ++|++|||.+. ..++ ..+++++...+..
T Consensus 165 ~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~----------dri~vl~~G~i~~ 219 (362)
T TIGR03258 165 LSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLA----------DKAGIMKDGRLAA 219 (362)
T ss_pred cccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEE
Confidence 9999999866655544 332 4 89999999553 4444 3467777766553
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=179.16 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=119.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+|+.+||+|||||||||||+.|+|...| .+|.+.++|.++..+....+ ..
T Consensus 18 ~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p-----------~~G~v~~~g~~l~~~~~~~l-----------A~ 75 (259)
T COG4559 18 DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSP-----------DSGEVTLNGVPLNSWPPEEL-----------AR 75 (259)
T ss_pred cCcceeccCCcEEEEECCCCccHHHHHHHhhCccCC-----------CCCeEeeCCcChhhCCHHHH-----------HH
Confidence 578889999999999999999999999999999988 89999999987543211000 01
Q ss_pred HHhhhccCcEE----------EEEecC----CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 133 VIAVSKSSDIV----------LMVLDA----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 133 ~~~~~~~~d~i----------~~v~~~----~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
....++....+ .+..-. ..+.++.+.+++.|++.++ ...+.+..|||||+||+.+|
T Consensus 76 ~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~ 155 (259)
T COG4559 76 HRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWP 155 (259)
T ss_pred HhhhcccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccC
Confidence 11222222222 111111 1223455568889999998 78888999999999999988
Q ss_pred -------eeecCCCCCCCHHHHHH---HHHHhccc-CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 -------FNSTLPLTHVDEKLCYQ---ILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 -------lilDEPt~~LD~~~~~~---~l~~l~~~-~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||+.||+..... +.+++... ++++.+-||..++.. |...|+++.+.-+.
T Consensus 156 ~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~---------YaDrivll~~Grv~ 220 (259)
T COG4559 156 PVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQ---------YADRIVLLHQGRVI 220 (259)
T ss_pred CCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHH---------hhheeeeeeCCeEe
Confidence 79999999999987544 45555544 499999999776542 44556666655443
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-25 Score=199.85 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+........++.+|
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q 109 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEP-----------TSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence 578889999999999999999999999999999988 889999999875422110000000011111122
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++.+..||+||+||++|| +++||||+
T Consensus 110 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~ 189 (269)
T cd03294 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFS 189 (269)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 1111111 111111110 01112223457788999999 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+. +.. ..++|++||+.. +.+++|
T Consensus 190 ~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d 229 (269)
T cd03294 190 ALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGD 229 (269)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 9999986655554 432 349999999954 344443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-25 Score=197.81 Aligned_cols=174 Identities=21% Similarity=0.236 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v~q 82 (236)
T cd03219 17 DDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRP-----------TSGSVLFDGEDITGLPPHEI---ARLGIGRTFQ 82 (236)
T ss_pred cCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEECCCCCHHHH---HhcCEEEEec
Confidence 577888889999999999999999999999999887 88999999876532110000 0001111111
Q ss_pred HHhhhcc---CcEEEEEecCC------------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 133 VIAVSKS---SDIVLMVLDAS------------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~------------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
....+.. .+++.+..... ........+.++++.+++ ..++++.+||+||+||+.+|
T Consensus 83 ~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p 162 (236)
T cd03219 83 IPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDP 162 (236)
T ss_pred ccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1111110 11111100000 011223457788999998 56888999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+++||||++||+.....+.+.+ ... .++|++||+.+. ..++| .++++++.-+
T Consensus 163 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d----------~i~~l~~G~i 221 (236)
T cd03219 163 KLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLAD----------RVTVLDQGRV 221 (236)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEeCCEE
Confidence 9999999999999866554444 333 389999999654 34343 3556665443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-25 Score=196.43 Aligned_cols=163 Identities=21% Similarity=0.240 Sum_probs=108.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+............++.+|
T Consensus 22 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 90 (221)
T TIGR02211 22 KGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNP-----------TSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQ 90 (221)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcCHhHHHHHHHhcEEEEec
Confidence 578889999999999999999999999999999988 899999999875332110000000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 91 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~ 170 (221)
T TIGR02211 91 FHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTG 170 (221)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 111111 111111100 001112223456788999999 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~~ 226 (317)
+||+.....+.+.+. . ..++|++||+....
T Consensus 171 ~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 205 (221)
T TIGR02211 171 NLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELA 205 (221)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999998665555443 2 34899999996543
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-25 Score=210.25 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=114.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++..|++++|+|+||||||||+++|+|+..| .+|.|.++|.++...+...+........++.+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-----------~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEP-----------TRGQVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCCEEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 3678899999999999999999999999999999988 89999999987643221100000011122222
Q ss_pred HHHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+.. .+++.+... ........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 113 Q~~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPt 192 (400)
T PRK10070 113 QSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAF 192 (400)
T ss_pred CCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 22211111 122211111 11122234567788999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHH
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
++||+.....+.+.+ .. ..++|++|||.+ +.+++|+
T Consensus 193 s~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dr 234 (400)
T PRK10070 193 SALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDR 234 (400)
T ss_pred ccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCE
Confidence 999999866555544 32 238999999954 3444443
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-25 Score=205.84 Aligned_cols=165 Identities=21% Similarity=0.237 Sum_probs=111.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc-cccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~-~~~~~~~~~~~~~ 132 (317)
++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.... .+. ........++.+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~i~~~~-~~~~~~~~~~~i~~v~q 82 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRP-----------DEGEIVLNGRTLFDSR-KGIFLPPEKRRIGYVFQ 82 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccCc-cccccchhhCCeEEEec
Confidence 67888899999999999999999999999999988 8999999998763211 000 0001112222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+.............+.++++.+++ ..++++.+|||||+||+++| +++||||++|
T Consensus 83 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~L 162 (354)
T TIGR02142 83 EARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAAL 162 (354)
T ss_pred CCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCC
Confidence 2211111 12221111111112223457888999999 67889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ ... + ++|++||+.+ +..++|
T Consensus 163 D~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d 200 (354)
T TIGR02142 163 DDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLAD 200 (354)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999866555444 332 3 8999999954 334443
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-25 Score=207.15 Aligned_cols=171 Identities=21% Similarity=0.259 Sum_probs=118.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| ++|.|.++|.++...+ . .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p-----------~~G~I~~~g~~i~~~~--~----~~~~i~~v~Q 82 (369)
T PRK11000 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDI-----------TSGDLFIGEKRMNDVP--P----AERGVGMVFQ 82 (369)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCCCC--H----hHCCEEEEeC
Confidence 478888889999999999999999999999999988 8999999998753211 0 1112233333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 2222221 222222111 11112234567888999999 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+.....+.+. +.. ..++|++|||.+ +..++| .+++++..-+
T Consensus 163 ~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d----------~i~vl~~G~i 212 (369)
T PRK11000 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD----------KIVVLDAGRV 212 (369)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC----------EEEEEECCEE
Confidence 9999986655444 433 238999999954 444444 3556665543
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-25 Score=202.34 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=117.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| ++|.|.++|.++.. +.. ......++.++
T Consensus 19 ~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-----------~~G~i~i~g~~~~~-~~~----~~~~~ig~~~q 82 (301)
T TIGR03522 19 DEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPP-----------DSGSVQVCGEDVLQ-NPK----EVQRNIGYLPE 82 (301)
T ss_pred EEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccc-ChH----HHHhceEEecC
Confidence 578889999999999999999999999999999888 89999999976532 100 00111111111
Q ss_pred HHhhhc---cCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+..... ......+.+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 83 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~ 162 (301)
T TIGR03522 83 HNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTT 162 (301)
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 111111 111111111111 112223467888999999 57889999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+.+ .+....++|++||+.+ ++++||+ ++++++..+..
T Consensus 163 gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~----------i~~l~~G~i~~ 212 (301)
T TIGR03522 163 GLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR----------VIIINKGKIVA 212 (301)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE----------EEEEECCEEEE
Confidence 999998655544 4444359999999954 6666654 55666655543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-25 Score=206.09 Aligned_cols=174 Identities=17% Similarity=0.124 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+............++.+|
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q 83 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRP-----------QKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQ 83 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccchhhCCEEEEcC
Confidence 368888899999999999999999999999999988 899999999775321100000011122233333
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+... ......+.++++.+++ ..++++.+|||||+||++|| +++||||++|
T Consensus 84 ~~~l~~~~tv~enl~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 84 DARLFPHYKVRGNLRYGMA----KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred CcccCCCCcHHHHHHhhhh----hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 2222221 122211111 1223467788999999 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+.+.+ ... + ++|++|||.+ +..++| .++++++.-+.
T Consensus 160 D~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d----------~i~~l~~G~i~ 208 (352)
T PRK11144 160 DLPRKRELLPYLERLAREINIPILYVSHSLDEILRLAD----------RVVVLEQGKVK 208 (352)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC----------EEEEEeCCEEE
Confidence 999866555444 332 3 8999999954 444444 35566655443
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-25 Score=191.81 Aligned_cols=166 Identities=19% Similarity=0.158 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..+.............++..+
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 83 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKF-----------DSGQVYLNGKETPPLNSKKASKFRREKLGYLFQ 83 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccchhhHHHHHHhCeeEEec
Confidence 578888889999999999999999999999999887 899999999875321100000000111111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 84 ~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~ 163 (206)
T TIGR03608 84 NFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTG 163 (206)
T ss_pred chhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcC
Confidence 1111111 111111000 01112234567788999998 67888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---cc-CcEEEecCCCChhhHH
Q 021103 197 HVDEKLCYQILHEYK---IH-NAEVLFREDATVDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~ 229 (317)
+||+.....+.+.+. .. .++|++||+....+.+
T Consensus 164 ~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 164 SLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhc
Confidence 999998666655543 33 4899999997654433
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-25 Score=206.99 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ...+...++.+|
T Consensus 22 ~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~ig~v~q 89 (343)
T PRK11153 22 NNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERP-----------TSGRVLVDGQDLTALSEKEL-RKARRQIGMIFQ 89 (343)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCHHHH-HHHhcCEEEEeC
Confidence 578899999999999999999999999999999988 89999999987642211000 000111222222
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 90 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts 169 (343)
T PRK11153 90 HFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATS 169 (343)
T ss_pred CCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 111111 1111111111 11112223467788999999 57888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
+||+.....+++.+ ... + ++|++||+.+. .++||+
T Consensus 170 ~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~ 210 (343)
T PRK11153 170 ALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDR 210 (343)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999866555544 332 4 89999999553 444443
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-25 Score=207.43 Aligned_cols=172 Identities=20% Similarity=0.192 Sum_probs=122.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|||||||||||++|+|...| .+|.|.++|.++.. .+ ......++.+|
T Consensus 31 ~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p-----------~~G~I~~~g~~i~~--~~----~~~r~ig~vfQ 93 (375)
T PRK09452 31 SNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETP-----------DSGRIMLDGQDITH--VP----AENRHVNTVFQ 93 (375)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEec
Confidence 468888899999999999999999999999999988 89999999987632 11 11223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ........+.++++.+++ ..++++.+|||||+||++|| +++|||++
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 4433333 23332222111 112224467888999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+...+. . .+ ++|++|||.. +..++| .+++++..-+.
T Consensus 174 ~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laD----------ri~vl~~G~i~ 224 (375)
T PRK09452 174 ALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD----------RIVVMRDGRIE 224 (375)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999998666555543 2 24 8999999954 344443 46666665444
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-25 Score=193.59 Aligned_cols=162 Identities=15% Similarity=0.126 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. .+ .......++.+|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~--~~---~~~~~~i~~~~q 80 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP-----------TSGRATVAGHDVVR--EP---REVRRRIGIVFQ 80 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecCc--Ch---HHHhhcEEEecC
Confidence 578888889999999999999999999999999887 89999999876431 00 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~ 160 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTI 160 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111100 111111000 01112234467888999999 56888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ ... + ++|++||+.. +..+++
T Consensus 161 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 161 GLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999866655544 332 4 8999999955 344443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-25 Score=191.24 Aligned_cols=165 Identities=18% Similarity=0.180 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+.+. .......++..+
T Consensus 17 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 83 (213)
T cd03262 17 KGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEP-----------DSGTIIIDGLKLTDDKKNI--NELRQKVGMVFQ 83 (213)
T ss_pred cCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccchhH--HHHHhcceEEec
Confidence 577888899999999999999999999999999988 8999999998653110000 000111111111
Q ss_pred HHhhhc---cCcEEEEE---ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMV---LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+. ............+.++++.+++ ..++++.+||+||+||++++ +++||||
T Consensus 84 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 163 (213)
T cd03262 84 QFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPT 163 (213)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 111111 11111111 0111112233457788899998 57889999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhccc-CcEEEecCCCCh-hhHHH
Q 021103 196 THVDEKLCYQILH---EYKIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~-~~~~~ 230 (317)
++||+.....+.+ .+... .++|++||+... .+++|
T Consensus 164 ~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d 203 (213)
T cd03262 164 SALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVAD 203 (213)
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 9999988655544 44333 489999999553 34443
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-25 Score=201.01 Aligned_cols=169 Identities=17% Similarity=0.120 Sum_probs=111.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.....+.-........++..
T Consensus 23 l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~ 91 (287)
T PRK13641 23 LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP-----------SSGTITIAGYHITPETGNKNLKKLRKKVSLVF 91 (287)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchHHHHHhceEEEE
Confidence 3678899999999999999999999999999999988 89999999987632110000000011111111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+.+.+... ..........+.++++.+++ ..++++..||+||+||++|| +++||
T Consensus 92 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDE 171 (287)
T PRK13641 92 QFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDE 171 (287)
T ss_pred eChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 110 00 011111111100 11122233467788999998 35788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+.+. +...+ ++|++||+.. +.++||+
T Consensus 172 Pt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~ 214 (287)
T PRK13641 172 PAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADD 214 (287)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 9999999986555444 43334 9999999955 4455543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-25 Score=194.73 Aligned_cols=171 Identities=21% Similarity=0.217 Sum_probs=114.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .....++..|
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~v~q 81 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERP-----------DSGTILFGGEDATDVPV------QERNVGFVFQ 81 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------cccceEEEec
Confidence 578888889999999999999999999999999887 89999999976532110 0011111122
Q ss_pred HHhhh---ccCcEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ......+.+.++++.+++ ..++++.+||+||+||+++| +++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11111 1111121111000 111223456788999998 57888999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILH---EYKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+ .+.. ..++|++||+.+ +...+| .++++++..+
T Consensus 162 EP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d----------~i~~l~~G~i 215 (239)
T cd03296 162 EPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD----------RVVVMNKGRI 215 (239)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCeE
Confidence 9999999998665544 4433 238999999965 334333 4556665443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-25 Score=196.02 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++..|
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 94 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTP-----------TSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQ 94 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCHHHHHHHHhccEEEEec
Confidence 578889999999999999999999999999999887 899999999876432110000000011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+.. .........+.+.++++.+++ ..++.+.+||+||+||+++| +++||||+
T Consensus 95 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 174 (233)
T PRK11629 95 FHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTG 174 (233)
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 1111110 11111100 011122233467788999999 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~~ 226 (317)
+||+.....+.+.+ .. .+ ++|++||+.+..
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~ 209 (233)
T PRK11629 175 NLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLA 209 (233)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999866555444 32 34 899999996543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.2e-25 Score=192.99 Aligned_cols=160 Identities=21% Similarity=0.191 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+...
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~------ 83 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERP-----------TSGEVLVDGEPVTGPGPDRGYVFQQDA------ 83 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECccccCcEEEEecccc------
Confidence 578888999999999999999999999999999887 899999998765311 00111111100
Q ss_pred HHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
........+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 84 -~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~L 162 (220)
T cd03293 84 -LLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSAL 162 (220)
T ss_pred -cccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCC
Confidence 0000000111111100 01112234567788999999 56888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc----c-cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEYK----I-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~----~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 163 D~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 163 DALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 9998666555443 2 248999999965 445444
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-25 Score=195.49 Aligned_cols=165 Identities=21% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+............++.+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 94 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDG-----------SSGEVSLVGQPLHQMDEEARAKLRAKHVGFVF 94 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeeEEECCEEcccCCHHHHHHHHhheEEEEE
Confidence 3578889999999999999999999999999999988 89999999986643211000000000111111
Q ss_pred HHHhhhc---cCcEEEEE--ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSK---SSDIVLMV--LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v--~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+. ..+.+.+. ..........+.+.++++.+++ ..++.+..||+||+||+.+| +++||||
T Consensus 95 q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt 174 (228)
T PRK10584 95 QSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPT 174 (228)
T ss_pred cccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 1111111 11111110 0111112234567888999998 56788999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhh
Q 021103 196 THVDEKLCYQILHEY---KI--HNAEVLFREDATVDD 227 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~ 227 (317)
++||+.....+.+.+ .. ..++|++||+....+
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 211 (228)
T PRK10584 175 GNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA 211 (228)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH
Confidence 999998865554444 32 348999999965433
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-25 Score=180.88 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=124.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|...++||||||||||||.+++++... ++|.|.++|.++.-.++..+. .......|
T Consensus 18 ~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-----------d~G~i~i~g~~~~~~~s~~LA----k~lSILkQ 82 (252)
T COG4604 18 DDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKK-----------DSGEITIDGLELTSTPSKELA----KKLSILKQ 82 (252)
T ss_pred ccceeeecCCceeEEECCCCccHHHHHHHHHHhccc-----------cCceEEEeeeecccCChHHHH----HHHHHHHh
Confidence 567888888999999999999999999999999988 899999999887543322111 01111111
Q ss_pred H---HhhhccCcEEEEEecCC----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 V---IAVSKSSDIVLMVLDAS----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~---~~~~~~~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
. ..-+...|++-|....+ -..++...+.++++.+++ ..+++..+|||||+||..+| +++|||
T Consensus 83 ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEP 162 (252)
T COG4604 83 ENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEP 162 (252)
T ss_pred hchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCc
Confidence 1 01112233333332221 234466778899999998 67888999999999999887 899999
Q ss_pred CCCCCHHHHHHHHHHhc----c-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK----I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
.|+||.....++++.++ . +.|++++-||..++.. |...|+++-+.-++
T Consensus 163 LNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~---------YsD~IVAlK~G~vv 215 (252)
T COG4604 163 LNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASC---------YSDHIVALKNGKVV 215 (252)
T ss_pred ccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHh---------hhhheeeecCCEEE
Confidence 99999998666555554 2 3499999999887752 55667776665544
|
|
| >COG2262 HflX GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=188.02 Aligned_cols=162 Identities=31% Similarity=0.363 Sum_probs=127.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCch-hHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~ 139 (317)
-..|+|+|++|||||||||+|+|....+.+..|+|++|+.-.+.+. |.++.+.||.||+...+...- -++..+.....
T Consensus 192 ~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~ 271 (411)
T COG2262 192 IPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKE 271 (411)
T ss_pred CCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999999999999999999987 688999999999987665533 34456667778
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|++++.... .+ +...++|.++..
T Consensus 272 aDlllhVVDaSdp~~~~-~~-----------------------------------------~~v~~vL~el~~------- 302 (411)
T COG2262 272 ADLLLHVVDASDPEILE-KL-----------------------------------------EAVEDVLAEIGA------- 302 (411)
T ss_pred CCEEEEEeecCChhHHH-HH-----------------------------------------HHHHHHHHHcCC-------
Confidence 99999999998763221 11 223344444431
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHHhcC-CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLARQ-PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
...|+|+|+||+|++..+. ...+... +..+++||++|.|++.|.+.|.+.+..
T Consensus 303 -----------------~~~p~i~v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 303 -----------------DEIPIILVLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG 357 (411)
T ss_pred -----------------CCCCEEEEEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence 1379999999999887665 3344433 358999999999999999999998863
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.3e-24 Score=175.01 Aligned_cols=188 Identities=17% Similarity=0.189 Sum_probs=132.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccc--------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGA-------- 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~-------- 123 (317)
.++|+....|..|.|||-+||||||+|+||.-+..| ..|.|.++|..+... |..|-....
T Consensus 23 KGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P-----------~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~ 91 (256)
T COG4598 23 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL 91 (256)
T ss_pred cceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCC-----------CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence 467788888999999999999999999999988888 899999999988654 333322111
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
+...++++|.+.+..+..++..++.+ .......++++.+|.++|+ ..+.+|..|||||+||++||
T Consensus 92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP 171 (256)
T COG4598 92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEP 171 (256)
T ss_pred HHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCC
Confidence 12334455554444444333333222 1233455678899999999 78899999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++|||||.|||+.+-++|+-+ ...+ |.+++||+..+++-+. ..++.+.+.-+...+..+.+.
T Consensus 172 ~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vs---------s~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVS---------SHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred ceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhh---------hheEEeecceecccCChHHHh
Confidence 8899999999999866655544 4444 9999999988776432 234455555444333333333
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-25 Score=193.68 Aligned_cols=161 Identities=20% Similarity=0.225 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 18 ~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~q 85 (214)
T cd03292 18 DGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELP-----------TSGTIRVNGQDVSDLRGRAI-PYLRRKIGVVFQ 85 (214)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHH-HHHHHheEEEec
Confidence 578899999999999999999999999999999887 89999999986532210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 86 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 165 (214)
T cd03292 86 DFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTG 165 (214)
T ss_pred CchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1111111 111111110 01111223457788999998 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-CcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ... .++|++||+...
T Consensus 166 ~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~ 198 (214)
T cd03292 166 NLDPDTTWEIMNLLKKINKAGTTVVVATHAKEL 198 (214)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 99999866555444 333 489999999543
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-25 Score=195.66 Aligned_cols=166 Identities=20% Similarity=0.169 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 86 (243)
T TIGR02315 19 KNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEP-----------SSGSILLEGTDITKLRGKKL-RKLRRRIGMIFQ 86 (243)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CccEEEECCEEhhhCCHHHH-HHHHhheEEEcC
Confidence 578889999999999999999999999999999888 89999999987542210000 000011111111
Q ss_pred HHhhh---ccCcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS---KSSDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||++||
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l 166 (243)
T TIGR02315 87 HYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDL 166 (243)
T ss_pred CCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 11111111100 00112234567788999998 56888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+ .+.. ..++|++||+... .+++|
T Consensus 167 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d 214 (243)
T TIGR02315 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYAD 214 (243)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999999999998655544 4432 2389999999654 34443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-25 Score=190.62 Aligned_cols=161 Identities=18% Similarity=0.221 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+. .....++.+|
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~v~~~g~~~~~~~~------~~~~i~~~~q 79 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEP-----------TSGRIYIGGRDVTDLPP------KDRDIAMVFQ 79 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCCc------ccceEEEEec
Confidence 578889999999999999999999999999999888 89999999987532111 0011122122
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111 111111110 11122233457788999998 57889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d 199 (213)
T cd03301 160 NLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD 199 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 99999866655544 32 349999999954 344443
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-25 Score=193.99 Aligned_cols=161 Identities=22% Similarity=0.239 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~~~q 86 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERP-----------SAGKIWFSGHDITRLKNREV-PFLRRQIGMIFQ 86 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEcccCChhHH-HHHHhheEEEec
Confidence 578889999999999999999999999999999987 89999999987642211000 000011111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. ...........+.++++.+++ ..++.+.+||+||+||++++ +++||||+
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 166 (222)
T PRK10908 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTG 166 (222)
T ss_pred CccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111100 011111110 011112223456788999998 56888999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---ccc-CcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIH-NAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ... .++|++||+...
T Consensus 167 ~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 199 (222)
T PRK10908 167 NLDDALSEGILRLFEEFNRVGVTVLMATHDIGL 199 (222)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99998865554444 333 489999999553
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-25 Score=207.01 Aligned_cols=173 Identities=16% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|++++|+|||||||||||++|+|...| .+|.|.++|.++...+... .....++..|
T Consensus 20 ~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p-----------~sG~I~l~G~~i~~~~~~~----~~~~ig~v~q 84 (402)
T PRK09536 20 DGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTP-----------TAGTVLVAGDDVEALSARA----ASRRVASVPQ 84 (402)
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEEcCcCCHHH----HhcceEEEcc
Confidence 578889999999999999999999999999999988 8999999998754221100 0111121111
Q ss_pred HHhh---hccCcEEEEEec----CCC--chhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAV---SKSSDIVLMVLD----ASK--SEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~----~~~--~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.... +...+++.+... ... .....+.+.++|+.+++ ..++++.+||+||+||+.|| +++|
T Consensus 85 ~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLD 164 (402)
T PRK09536 85 DTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLD 164 (402)
T ss_pred CCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1110 111122211110 001 22345568889999999 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHH---HHHHhcccC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQ---ILHEYKIHN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~---~l~~l~~~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+....+ +++.+...+ ++|++|||.... ++|| .++++++.-+
T Consensus 165 EPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ad----------rii~l~~G~i 217 (402)
T PRK09536 165 EPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCD----------ELVLLADGRV 217 (402)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC----------EEEEEECCEE
Confidence 9999999987554 455554334 999999995543 5444 4556665543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-24 Score=193.67 Aligned_cols=178 Identities=17% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc----cccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI----IEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~----~~~~~~~~~ 128 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.... ........+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 88 (250)
T PRK11264 20 HGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQP-----------EAGTIRVGDITIDTARSLSQQKGLIRQLRQHVG 88 (250)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEccccccccchhhHHHHhhhhEE
Confidence 578888889999999999999999999999999887 89999999987642210000 000001111
Q ss_pred hHHHHHhhhc---cCcEEEEE---ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIAVSK---SSDIVLMV---LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~~~~---~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+..|....+. ..+.+.+. ..........+.+.++++.+++ ..++++.+||+||+||+.+| +++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllL 168 (250)
T PRK11264 89 FVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILF 168 (250)
T ss_pred EEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEE
Confidence 1111111111 11111110 0111111223456788899998 56788999999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHH---Hhcc-cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILH---EYKI-HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~---~l~~-~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+ .+.. ..++|++||+... .+++| .+++++...+.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d----------~i~~l~~G~i~ 223 (250)
T PRK11264 169 DEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVAD----------RAIFMDQGRIV 223 (250)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 99999999998665554 4433 3499999999543 34443 45666655443
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-25 Score=187.16 Aligned_cols=159 Identities=19% Similarity=0.136 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. +.... .......++..|
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~-~~~~~-~~~~~~i~~~~q 75 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRP-----------QSGAVLIDGEPLDY-SRKGL-LERRQRVGLVFQ 75 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceeEEECCEEccc-cccch-HHHHhhEEEEec
Confidence 578889999999999999999999999999999887 89999999987631 11000 000111111111
Q ss_pred HHh--hh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--VS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||
T Consensus 76 ~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 155 (190)
T TIGR01166 76 DPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPT 155 (190)
T ss_pred ChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 110 00 11111111100 01111223456788889998 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhc---ccC-cEEEecCCCC
Q 021103 196 THVDEKLCYQILHEYK---IHN-AEVLFREDAT 224 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~ 224 (317)
++||+.....+.+.+. ..+ ++|++||+.+
T Consensus 156 ~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 156 AGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999998666555443 334 8999999965
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.1e-25 Score=192.17 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=114.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .++..+...-.
T Consensus 2 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q~~~l~---- 66 (230)
T TIGR01184 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQP-----------TSGGVILEGKQITEPGPDRMVVFQNYSLL---- 66 (230)
T ss_pred CceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCChhheEEecCcccC----
Confidence 367888889999999999999999999999999988 89999999976532110 12211110000
Q ss_pred HHHhhhccCcEEEEEe----cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 QVIAVSKSSDIVLMVL----DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~----~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
......+++.+.. .........+.+.++++.+++ ..++++..|||||+||+.++ +++||||+
T Consensus 67 ---~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 143 (230)
T TIGR01184 67 ---PWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143 (230)
T ss_pred ---CCCCHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 0000011111100 011112233457788999999 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++||+.. +.+++| .++++++..+.
T Consensus 144 gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d----------~v~~l~~G~i~ 194 (230)
T TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSD----------RVVMLTNGPAA 194 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEeCCcEe
Confidence 999998666655443 2 238999999955 344443 35566655443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.2e-25 Score=194.06 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~-~~~~~~i~~~~q 85 (241)
T cd03256 18 KDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEP-----------TSGSVLIDGTDINKLKGKAL-RQLRRQIGMIFQ 85 (241)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEeccccCHhHH-HHHHhccEEEcc
Confidence 578889999999999999999999999999999887 88999999987643220000 000011111111
Q ss_pred HHhhhc---cCcEEEEEe----------cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK---SSDIVLMVL----------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~----------~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .........+.+.++++.+++ ..++++.+||+||+||+++|
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 165 (241)
T cd03256 86 QFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKL 165 (241)
T ss_pred cCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 111111 011111000 000112234467788999998 57888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+ .. ..++|++||+.+..
T Consensus 166 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 166 ILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 9999999999999866554444 32 34899999996543
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-25 Score=204.93 Aligned_cols=172 Identities=17% Similarity=0.200 Sum_probs=122.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| .+|.|.++|.++.. .+ ......++.+|
T Consensus 36 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p-----------~~G~I~i~g~~i~~--~~----~~~r~ig~vfQ 98 (377)
T PRK11607 36 DDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQP-----------TAGQIMLDGVDLSH--VP----PYQRPINMMFQ 98 (377)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECCC--CC----HHHCCEEEEeC
Confidence 478889999999999999999999999999999988 89999999987531 11 12223444444
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.+ .+++.+..... ......+++.++++.+++ ..++++.+|||||+||++|| +++|||++
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 4433433 23332222211 112234567888999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---c-ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEY---K-IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||......+...+ . ..+ ++|++|||.+ +..++| .+++++..-+.
T Consensus 179 ~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laD----------ri~vl~~G~i~ 229 (377)
T PRK11607 179 ALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG----------RIAIMNRGKFV 229 (377)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEEeCCEEE
Confidence 99999865554333 2 234 9999999955 345444 45666665443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-25 Score=199.00 Aligned_cols=178 Identities=22% Similarity=0.196 Sum_probs=117.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
-.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ... .......+++
T Consensus 22 l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v 89 (288)
T PRK13643 22 LFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQP-----------TEGKVTVGDIVVSSTSKQKEI-KPVRKKVGVV 89 (288)
T ss_pred eeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccccH-HHHHhhEEEE
Confidence 3578899999999999999999999999999999988 89999999987632110 000 0001112222
Q ss_pred HHHH--hhh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 131 RQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 131 ~~~~--~~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+|.. ..+ ...+.+.+.... .........+.++|+.+++ ..++.+..||+||+||++|| +++|
T Consensus 90 ~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLD 169 (288)
T PRK13643 90 FQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLD 169 (288)
T ss_pred ecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2211 000 111111111110 1112233457788999998 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ ...+ ++|++|||... .+++| .++++++.-+.
T Consensus 170 EPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~d----------ri~~l~~G~i~ 223 (288)
T PRK13643 170 EPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYAD----------YVYLLEKGHII 223 (288)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866655444 3334 99999999653 34443 46666665444
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.1e-25 Score=193.05 Aligned_cols=164 Identities=18% Similarity=0.195 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 82 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKP-----------DSGKILLDGQDITKLPMHKR---ARLGIGYLPQ 82 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccCCHhHH---HhccEEEecC
Confidence 577888889999999999999999999999999988 89999999976532211000 0011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++.+..||+||+||+.++ +++||||+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~ 162 (232)
T cd03218 83 EASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFA 162 (232)
T ss_pred CccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 1111111 111111000 01111223456788899998 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---HhcccC-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILH---EYKIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+.+ .+...+ ++|++||+.+ +.++++
T Consensus 163 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 201 (232)
T cd03218 163 GVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITD 201 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 999998665544 444334 8999999964 555443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-25 Score=200.00 Aligned_cols=178 Identities=17% Similarity=0.170 Sum_probs=116.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-------------ecCCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-------------LDLPGI 119 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-------------~d~~g~ 119 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. ++..+.
T Consensus 24 ~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 92 (305)
T PRK13651 24 DNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLP-----------DTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKT 92 (305)
T ss_pred eeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEEeceecccccccccccccccccccccc
Confidence 578899999999999999999999999999999988 88999998765421 010000
Q ss_pred -------cccccCCchhHHHHH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCccccccee
Q 021103 120 -------IEGASEGKGRGRQVI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKK 183 (317)
Q Consensus 120 -------~~~~~~~~~~~~~~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~q 183 (317)
........++++|.. ..+ ...+.+.+... .........++.++++.+++ ..++++..|||||+|
T Consensus 93 ~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkq 172 (305)
T PRK13651 93 RFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKR 172 (305)
T ss_pred cccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence 000111122222211 000 00111111111 11122234567888999998 368899999999999
Q ss_pred eeeeE---------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEeccc
Q 021103 184 TGGIS---------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKID 249 (317)
Q Consensus 184 r~~ia---------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D 249 (317)
|++|| +++||||++||+.....+++.+ ...+ ++|++|||.+ +.+.+| .+++++...
T Consensus 173 rvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ad----------rv~vl~~G~ 242 (305)
T PRK13651 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK----------RTIFFKDGK 242 (305)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCC----------EEEEEECCE
Confidence 99998 9999999999999866555544 3334 9999999965 445444 456666654
Q ss_pred CC
Q 021103 250 VI 251 (317)
Q Consensus 250 ~~ 251 (317)
+.
T Consensus 243 i~ 244 (305)
T PRK13651 243 II 244 (305)
T ss_pred EE
Confidence 43
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=188.28 Aligned_cols=161 Identities=19% Similarity=0.182 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. .....++..|
T Consensus 15 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~q 77 (211)
T cd03298 15 MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETP-----------QSGRVLINGVDVTAAPP------ADRPVSMLFQ 77 (211)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCcCCH------hHccEEEEec
Confidence 378899999999999999999999999999999988 89999999986532110 0011122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 111111 11222211110 1011234467788999998 57888999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+++.+. . ..++|++||+.+ +.+++|
T Consensus 158 ~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d 197 (211)
T cd03298 158 ALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQ 197 (211)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhC
Confidence 999998666555543 2 238999999965 344444
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-25 Score=192.21 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=110.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. . + .......++.+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~-~-~---~~~~~~i~~~~ 84 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEP-----------DAGFATVDGFDVVK-E-P---AEARRRLGFVS 84 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEEECCEEccc-C-H---HHHHhhEEEec
Confidence 3578889899999999999999999999999999888 89999999987642 1 0 00011111111
Q ss_pred HHHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|....+.. .+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 85 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt 164 (218)
T cd03266 85 DSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPT 164 (218)
T ss_pred CCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 11111111 1111111100 1112234567788999999 57889999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+ ... .++|++||+.. +.+++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 204 (218)
T cd03266 165 TGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204 (218)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcC
Confidence 999999865554444 333 49999999964 344443
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-25 Score=191.00 Aligned_cols=162 Identities=18% Similarity=0.174 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++.... .......++..|
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~i~~v~q 82 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRP-----------TSGTAYINGYSIRTDR-----KAARQSLGYCPQ 82 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEecccch-----HHHhhhEEEecC
Confidence 578889999999999999999999999999999888 8999999998753210 000011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||+
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~ 162 (220)
T cd03263 83 FDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTS 162 (220)
T ss_pred cCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 1111100 111111100 01111223457788999998 56788999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhc---ccCcEEEecCCCChh-hHHH
Q 021103 197 HVDEKLCYQILHEYK---IHNAEVLFREDATVD-DLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~-~~~~ 230 (317)
+||+.....+++.+. ...++|++||+.+.. +.+|
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 163 GLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 999998666655553 334899999996543 4443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-25 Score=196.32 Aligned_cols=160 Identities=18% Similarity=0.143 Sum_probs=108.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... ..|+..+...-
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~v~q~~~~----- 81 (255)
T PRK11248 18 EDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPY-----------QHGSITLDGKPVEGPGAERGVVFQNEGL----- 81 (255)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCCcEEEEeCCCcc-----
Confidence 578899999999999999999999999999999988 8999999987652110 01221111000
Q ss_pred HHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.......+.+.+... ..........+.++++.+++ ..++++..|||||+||+.+| +++||||++|
T Consensus 82 --~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~L 159 (255)
T PRK11248 82 --LPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGAL 159 (255)
T ss_pred --CCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 000000111111000 11112233467888999998 56788999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+. . ..++|++|||.+. ..++|
T Consensus 160 D~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d 197 (255)
T PRK11248 160 DAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMAT 197 (255)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9998665555443 2 3489999999653 44444
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-24 Score=196.18 Aligned_cols=166 Identities=19% Similarity=0.157 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+. ......++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q 91 (269)
T PRK11831 24 DNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAP-----------DHGEILFDGENIPAMSRSRLY-TVRKRMSMLFQ 91 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccChhhHH-HHhhcEEEEec
Confidence 578899999999999999999999999999999988 889999999765322110000 00011111111
Q ss_pred HHhhhcc---CcEEEEEec---CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+.. .+++.+... ..........+.+.|+.+++ ..++++..|||||+||+.|| +++||||
T Consensus 92 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 171 (269)
T PRK11831 92 SGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPF 171 (269)
T ss_pred ccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 1111111 111111100 01111123456778899999 57888999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHH---hcc--cCcEEEecCCC-ChhhHHH
Q 021103 196 THVDEKLCYQILHE---YKI--HNAEVLFREDA-TVDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~---l~~--~~~~i~~shd~-~~~~~~~ 230 (317)
++||+.....+++. +.. ..++|++|||. .+.++++
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d 212 (269)
T PRK11831 172 VGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIAD 212 (269)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhC
Confidence 99999986655444 433 24899999994 4445444
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.7e-25 Score=197.34 Aligned_cols=174 Identities=17% Similarity=0.130 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++....... .....++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~v~q 88 (279)
T PRK13650 24 NDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEA-----------ESGQIIIDGDLLTEENVWD----IRHKIGMVFQ 88 (279)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHHH----HHhhceEEEc
Confidence 578899999999999999999999999999999988 8999999998763211000 0111222222
Q ss_pred HHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+... ..........+.++++.+++ ..++.+..||+||+||++|| +++||||
T Consensus 89 ~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 168 (279)
T PRK13650 89 NPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEAT 168 (279)
T ss_pred ChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 110 11 11122222111 11122234567889999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++.+ ... + ++|++||+......+ ..+++++..-+.
T Consensus 169 ~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~----------dri~~l~~G~i~ 219 (279)
T PRK13650 169 SMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALS----------DRVLVMKNGQVE 219 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC----------CEEEEEECCEEE
Confidence 999999866665544 332 4 999999996543333 345666655443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-25 Score=192.55 Aligned_cols=166 Identities=21% Similarity=0.228 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+..... ......++.+|
T Consensus 22 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~i~~~~q 89 (233)
T cd03258 22 KDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERP-----------TSGSVLVDGTDLTLLSGKELR-KARRRIGMIFQ 89 (233)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcccCCHHHHH-HHHhheEEEcc
Confidence 577888999999999999999999999999999988 899999999876422100000 00011111111
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~ 169 (233)
T cd03258 90 HFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATS 169 (233)
T ss_pred CcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 1111110 111111100 11111223457788999998 56788999999999999988 89999999
Q ss_pred CCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+ .+.. ..++|++||+.+. .+++|
T Consensus 170 ~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 209 (233)
T cd03258 170 ALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICD 209 (233)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999998655544 4433 2389999999543 34443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-24 Score=213.11 Aligned_cols=153 Identities=19% Similarity=0.191 Sum_probs=107.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCC--CccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLP--GIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~--g~~~~~~~~~~ 128 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| ++|.|.+ |.+ +.+++.. .+.. ..
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-----------~~G~i~~-~~~~~i~y~~q~~~~l~~----~~- 398 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQA-----------DSGRIHC-GTKLEVAYFDQHRAELDP----EK- 398 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEE-CCCcEEEEEeCcccccCC----CC-
Confidence 578899999999999999999999999999999888 8899998 433 3333211 0100 00
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
.+.+.+... .. .... . .....+.++|+.|++ ..++++..|||||+||+.+| +++||||+
T Consensus 399 tv~e~l~~~--~~----~~~~-~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~ 469 (635)
T PRK11147 399 TVMDNLAEG--KQ----EVMV-N--GRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTN 469 (635)
T ss_pred CHHHHHHhh--cc----cccc-c--chHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 011111100 00 0000 1 112357788999988 46889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+||+.+...+.+.+.. .+++|++|||.. +..+|+.
T Consensus 470 ~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~ 506 (635)
T PRK11147 470 DLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTE 506 (635)
T ss_pred CCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCE
Confidence 9999997777776664 459999999954 4455543
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-25 Score=191.91 Aligned_cols=164 Identities=20% Similarity=0.188 Sum_probs=106.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++.+|
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 82 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPP-----------RSGSIRFDGRDITGLPPHER---ARAGIGYVPE 82 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEcCCCCHHHH---HhcCeEEecc
Confidence 578888999999999999999999999999999988 89999999976532111000 0111222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHc-cc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~-~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+.+.+.............+.++++.+ ++ ..++++..||+||+||+.+| +++||||++
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 162 (222)
T cd03224 83 GRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEG 162 (222)
T ss_pred ccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCccc
Confidence 1111111 111111100011111223455666766 35 56888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+++.+. .. .++|++||+.. +.++++
T Consensus 163 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 200 (222)
T cd03224 163 LAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIAD 200 (222)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcc
Confidence 99998666555543 33 49999999965 344443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-25 Score=190.35 Aligned_cols=160 Identities=16% Similarity=0.170 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~~ 130 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.. ....++..+...-..
T Consensus 17 ~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~-- 83 (210)
T cd03269 17 DDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILP-----------DSGEVLFDGKPLDIAARNRIGYLPEERGLYP-- 83 (210)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCCchhHHHHccEEEeccCCcCCc--
Confidence 567888899999999999999999999999999887 89999999875421 000111111100000
Q ss_pred HHHHhhhccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.....+++.+... ........+.+.++++.+++ ..++++.+||+||+||+.+| +++||||++
T Consensus 84 -----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~ 158 (210)
T cd03269 84 -----KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSG 158 (210)
T ss_pred -----CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence 0000111100000 01112234467788999998 56788999999999999988 899999999
Q ss_pred CCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+. .. .+++++||+.. +.+++|
T Consensus 159 LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d 196 (210)
T cd03269 159 LDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCD 196 (210)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhh
Confidence 99998666555543 33 48999999955 344454
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-24 Score=189.24 Aligned_cols=164 Identities=21% Similarity=0.230 Sum_probs=108.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~~~ 132 (317)
++++++.+ ++++|+|+||||||||+++|+|...| .+|.+.++|.++...... .. .......++..|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~-~~~~~~i~~~~q 82 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKP-----------DGGTIVLNGTVLFDSRKKINL-PPQQRKIGLVFQ 82 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccchhhh-hhHhhcEEEEec
Confidence 88899999 99999999999999999999999988 899999998765311000 00 000011111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+.............+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 111111 011111111111112234467788999998 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 163 D~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (214)
T cd03297 163 DRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLAD 200 (214)
T ss_pred CHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcC
Confidence 999866655544 33 238999999954 444443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-25 Score=205.26 Aligned_cols=168 Identities=17% Similarity=0.193 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee----EEEecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK----IQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~----i~~~d~~g~~~~~~~~~~ 128 (317)
.+++|++..|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +...+...+........+
T Consensus 41 ~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-----------~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 41 ANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPV-----------SRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 678889999999999999999999999999999988 89999999853 211110000000011233
Q ss_pred hHHHHHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 129 RGRQVIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+.+|....+.. .+++.+... ..........+.++++.+++ ..++++.+|||||+||++|| +++|
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlD 189 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMD 189 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 33332222221 122211111 11122234567888999999 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~~ 231 (317)
|||++||+.....+.+.+ .. ..++|++|||.+. .+++|+
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~Dr 234 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNR 234 (382)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 999999999866665554 33 3499999999654 455443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-25 Score=194.80 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+...
T Consensus 29 ~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~------ 91 (257)
T PRK11247 29 NQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETP-----------SAGELLAGTAPLAEAREDTRLMFQDAR------ 91 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEHHHhhCceEEEecCcc------
Confidence 578899999999999999999999999999999988 889999988653110 00111111100
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
........+++.+... . .....+.++++.+++ ..++++..|||||+||+.++ +++||||++||+
T Consensus 92 -l~~~~tv~enl~~~~~---~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 92 -LLPWKKVIDNVGLGLK---G-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred -CCCCCcHHHHHHhccc---c-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 0000001111111110 1 123457788999999 57888999999999999998 999999999999
Q ss_pred HHHHHHHHHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
.....+.+.+. . ..++|++|||... .+++|
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d 202 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMAD 202 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 98665544442 2 3499999999653 44444
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-25 Score=189.94 Aligned_cols=156 Identities=17% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+| +++|+|+||||||||+++|+|...| .+|.|.++|.++...+ . ......++.+|
T Consensus 17 ~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~-~----~~~~~i~~~~q 79 (211)
T cd03264 17 DGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPP-----------SSGTIRIDGQDVLKQP-Q----KLRRRIGYLPQ 79 (211)
T ss_pred cceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCCccccch-H----HHHhheEEecC
Confidence 5678888888 9999999999999999999999888 8999999987653211 0 00011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++||||+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~ 159 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTA 159 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111100 11111100 001111223457788999998 56888999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 197 HVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
+||+.....+.+.+ ....++|++||+.+.
T Consensus 160 ~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 191 (211)
T cd03264 160 GLDPEERIRFRNLLSELGEDRIVILSTHIVED 191 (211)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHH
Confidence 99999866555544 334599999999654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.5e-25 Score=201.42 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+ .+|.|.++|.++.-.+...+. ......++++|
T Consensus 38 ~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~-~~r~~i~~v~Q 105 (331)
T PRK15079 38 DGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKA-----------TDGEVAWLGKDLLGMKDDEWR-AVRSDIQMIFQ 105 (331)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCC-----------CCcEEEECCEECCcCCHHHHH-HHhCceEEEec
Confidence 578899999999999999999999999999999987 889999999876422110000 00112222222
Q ss_pred HH--hhhc---cCcEEEEEecC----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VI--AVSK---SSDIVLMVLDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~--~~~~---~~d~i~~v~~~----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. .... ..+.+.+.+.. .......+.+.++|+.+++ ..++++.+|||||+||++|| +++
T Consensus 106 ~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llil 185 (331)
T PRK15079 106 DPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIIC 185 (331)
T ss_pred CchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 21 0111 11111111110 1122234567788999998 46889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||.....++++.+ ... + ++|++|||.... +++| .++|++...++
T Consensus 186 DEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~d----------ri~vl~~G~iv 241 (331)
T PRK15079 186 DEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISD----------RVLVMYLGHAV 241 (331)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999999866665554 332 4 999999996544 3443 45666655544
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=195.52 Aligned_cols=175 Identities=18% Similarity=0.155 Sum_probs=117.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+. .......++.+
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~----~~~~~~i~~v~ 85 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLP-----------QRGRVKVMGREVNAENE----KWVRSKVGLVF 85 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCH----HHHHhhEEEEe
Confidence 3678899999999999999999999999999999988 89999999976531110 00011122222
Q ss_pred HHHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 86 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEP 165 (274)
T PRK13647 86 QDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEP 165 (274)
T ss_pred cChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECC
Confidence 2110 00 11111111110 11112223467788999999 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK---IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+. ..+ ++|++||+.+. .+.+| .+++++..-+.
T Consensus 166 t~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d----------~i~~l~~G~i~ 217 (274)
T PRK13647 166 MAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWAD----------QVIVLKEGRVL 217 (274)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999998666555543 334 99999999654 34444 45566555443
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-24 Score=193.97 Aligned_cols=193 Identities=20% Similarity=0.196 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++||++..|+++||||.+||||||+.++|+|+++ +-+ ...+|+|.|+|.++.-++.....+-....+++.+
T Consensus 22 ~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~-------~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIf 94 (316)
T COG0444 22 DGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA-------RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIF 94 (316)
T ss_pred eceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCC-------eEeeeEEEECCcccccCCHHHHHhhcCceEEEEE
Confidence 57889999999999999999999999999999986 311 1267899999987543321100000111122222
Q ss_pred HHHh-hhcc----CcEEEEEecCC----CchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------
Q 021103 132 QVIA-VSKS----SDIVLMVLDAS----KSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~-~~~~----~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|... .+.. .+-+.-.+... ...+..+++.++|+.+++ .++.+|.+|||||+||+.||
T Consensus 95 Q~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L 174 (316)
T COG0444 95 QDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL 174 (316)
T ss_pred cCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE
Confidence 2110 0000 00000000001 112235578899999999 46889999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+|+||||++||.....++++.++ . .+ ++|++|||.. +.+++| .|.|+..+-++.....+.+...
T Consensus 175 lIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aD----------ri~VMYaG~iVE~g~~~~i~~~ 244 (316)
T COG0444 175 LIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIAD----------RVAVMYAGRIVEEGPVEEIFKN 244 (316)
T ss_pred EEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcc----------eEEEEECcEEEEeCCHHHHhcC
Confidence 89999999999988666665554 3 34 9999999966 445444 4778877777655555544443
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-25 Score=190.94 Aligned_cols=159 Identities=13% Similarity=0.113 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++... . ......++..+
T Consensus 17 ~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~--~----~~~~~i~~~~q 79 (208)
T cd03268 17 DDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKP-----------DSGEITFDGKSYQKN--I----EALRRIGALIE 79 (208)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCCcccch--H----HHHhhEEEecC
Confidence 577888889999999999999999999999999887 899999998765311 0 00001111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+...... .....+.++++.+++ ..++++..||+||+||+.++ +++||||++|
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLG--IRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 100000 0111111000001 123457778899998 67888999999999999988 8999999999
Q ss_pred CHHHHHHHHHHh---ccc-CcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEY---KIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~-~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+ ... .++|++||+... ..++|
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d 194 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVAD 194 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcC
Confidence 999866655444 333 489999999653 34443
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-24 Score=195.23 Aligned_cols=176 Identities=13% Similarity=0.069 Sum_probs=117.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... ......++..
T Consensus 18 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~---~~~~~i~~v~ 83 (274)
T PRK13644 18 LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRP-----------QKGKVLVSGIDTGDFSKLQ---GIRKLVGIVF 83 (274)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEECCccccHH---HHHhheEEEE
Confidence 3578899999999999999999999999999999887 8999999998753221100 0001111111
Q ss_pred HHHh----hhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~----~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .....+++.+.... .......+.+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 84 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP 163 (274)
T PRK13644 84 QNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEV 163 (274)
T ss_pred EChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 00111111111110 1112223457788999998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ...+ ++|++||+.+....+ ..++++++..+.
T Consensus 164 t~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~----------d~v~~l~~G~i~ 214 (274)
T PRK13644 164 TSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDA----------DRIIVMDRGKIV 214 (274)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhC----------CEEEEEECCEEE
Confidence 9999999866555544 4334 999999996544333 346677766544
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-24 Score=197.20 Aligned_cols=166 Identities=19% Similarity=0.181 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... .... .......++.+
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v~ 91 (290)
T PRK13634 24 YDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP-----------TSGTVTIGERVITAGKKNKKL-KPLRKKVGIVF 91 (290)
T ss_pred eeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchH-HHHHhhEEEEe
Confidence 678899999999999999999999999999999988 8999999998763210 0000 00011112111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+.+.+... ........+.+.++|+.+++ ..++++..||+||+||++|| +++||
T Consensus 92 q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDE 171 (290)
T PRK13634 92 QFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDE 171 (290)
T ss_pred eCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 110 00 011111111110 11122223467788999998 25788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHH
Q 021103 194 PLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~ 230 (317)
||++||+.....+++.+ .. .+ ++|++|||.. +.+++|
T Consensus 172 Pt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~d 214 (290)
T PRK13634 172 PTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYAD 214 (290)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999866555544 33 24 8999999955 344444
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-24 Score=195.59 Aligned_cols=167 Identities=21% Similarity=0.189 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.....+.-........++..|
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q 92 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP-----------TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQ 92 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccCHHHHHhheEEEee
Confidence 578889999999999999999999999999999988 899999999876422100000000111111111
Q ss_pred HH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.. ..+ ...+++.+... ..........+.++++.+++ ..++++.+||+||+||+.+| +++|||
T Consensus 93 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 172 (280)
T PRK13649 93 FPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEP 172 (280)
T ss_pred ChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 000 11111111111 01111223456778888888 25788999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---cc-CcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+. .. .++|++||+.+ +.+++|
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d 213 (280)
T PRK13649 173 TAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYAD 213 (280)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCC
Confidence 99999998666555443 33 49999999965 334443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=192.01 Aligned_cols=164 Identities=18% Similarity=0.189 Sum_probs=110.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 85 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPR-----------DAGNIIIDDEDISLLPLH---ARARRGIGYLPQ 85 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHHhCeEEecc
Confidence 578888899999999999999999999999999888 899999999765321100 000111122222
Q ss_pred HHhhhc---cCcEEEEEecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++||||
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (241)
T PRK10895 86 EASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPF 165 (241)
T ss_pred CCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 111111 11222111111 1112233467788999998 56788999999999999988 9999999
Q ss_pred CCCCHHHHHHH---HHHhccc-CcEEEecCCC-ChhhHHH
Q 021103 196 THVDEKLCYQI---LHEYKIH-NAEVLFREDA-TVDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~---l~~l~~~-~~~i~~shd~-~~~~~~~ 230 (317)
++||+.....+ +..+... .++|++||+. .+.+++|
T Consensus 166 ~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 166 AGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 99999886544 4444433 4999999995 4555444
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-24 Score=185.80 Aligned_cols=152 Identities=15% Similarity=0.172 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.... . ......++..+
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~--~---~~~~~i~~~~q 80 (201)
T cd03231 17 SGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPP-----------LAGRVLLNGGPLDFQR--D---SIARGLLYLGH 80 (201)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccc--H---HhhhheEEecc
Confidence 578888889999999999999999999999999988 8899999987653211 0 00111111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+... ....+.+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~e~l~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 156 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA----DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTAL 156 (201)
T ss_pred ccccCCCcCHHHHHHhhcc----cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 11100 01111111110 1123467788899998 56788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCCC
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDAT 224 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~~ 224 (317)
|+.....+.+.+. . ..++|++||+..
T Consensus 157 D~~~~~~l~~~l~~~~~~g~tiii~sH~~~ 186 (201)
T cd03231 157 DKAGVARFAEAMAGHCARGGMVVLTTHQDL 186 (201)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 9998666655553 3 348999999844
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG1159 Era GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.7e-23 Score=180.06 Aligned_cols=156 Identities=31% Similarity=0.385 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
.+|||||+||+|||||+|.|.|.... +|+.|.|||....|.+..++.++.++||||+....+. +..+.......+.++
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dv 86 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDV 86 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccC
Confidence 38999999999999999999999865 9999999999999999999999999999999876322 233455566788899
Q ss_pred cEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|+++|++++...... .+.+ ++
T Consensus 87 Dlilfvvd~~~~~~~~d~~i-----------------------------------------------l~----------- 108 (298)
T COG1159 87 DLILFVVDADEGWGPGDEFI-----------------------------------------------LE----------- 108 (298)
T ss_pred cEEEEEEeccccCCccHHHH-----------------------------------------------HH-----------
Confidence 999999997653211 1111 11
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHH-------hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL-------ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l-------~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+.. ...|.++++||+|...++. +..+ ..+..++++||.+|.|++.|.+.+.+.|+.
T Consensus 109 -----------~lk~--~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe 173 (298)
T COG1159 109 -----------QLKK--TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE 173 (298)
T ss_pred -----------HHhh--cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence 1111 1469999999999987765 2222 235689999999999999999999999864
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-24 Score=189.54 Aligned_cols=161 Identities=16% Similarity=0.063 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. . ....++..|
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~i~~~~~~-~----~~~i~~~~q 81 (236)
T TIGR03864 18 DDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVA-----------QEGQISVAGHDLRRAPRA-A----LARLGVVFQ 81 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccCChh-h----hhhEEEeCC
Confidence 578888899999999999999999999999999988 899999999765321100 0 001111111
Q ss_pred HHhhh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+.+.+.... .........+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 82 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~ 161 (236)
T TIGR03864 82 QPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTV 161 (236)
T ss_pred CCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 10000 001111111000 1111223456788999998 57889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLI 229 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~ 229 (317)
+||+.....+.+.+ .. ..++|++||+.+....+
T Consensus 162 ~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 199 (236)
T TIGR03864 162 GLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEAD 199 (236)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhC
Confidence 99999866655544 32 34899999996544333
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-24 Score=199.59 Aligned_cols=183 Identities=17% Similarity=0.124 Sum_probs=117.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|++..|+++||+|+||||||||+++|+|+..+. -.+++|.|.++|.++.-.+...+........++.+|
T Consensus 24 ~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~-------~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 96 (326)
T PRK11022 24 DRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYP-------GRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQ 96 (326)
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 5788999999999999999999999999999998631 012689999999875322110000000011222222
Q ss_pred HHh--hhcc---CcEEEEEec---CCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... .... .+.+...+. ........+.+.++|+.+++ .+++++.+|||||+||++|| ++
T Consensus 97 ~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~lli 176 (326)
T PRK11022 97 DPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLI 176 (326)
T ss_pred CchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 110 0000 000000000 01122334567889999998 25789999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 191 STLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||||++||+.....+++.+. . .+ ++|++|||.... +++| .++|++..-++.
T Consensus 177 lDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~ad----------ri~vm~~G~ive 234 (326)
T PRK11022 177 ADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAH----------KIIVMYAGQVVE 234 (326)
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEEE
Confidence 999999999998666655543 3 24 899999996543 4443 466777665543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=199.86 Aligned_cols=183 Identities=18% Similarity=0.130 Sum_probs=117.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+++..|+++||+|+||||||||+++|+|...+.. ..+|.|.++|.++..++...+.......+++++|
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~--------~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q 104 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANG--------RIGGSATFNGREILNLPEKELNKLRAEQISMIFQ 104 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC--------CCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEc
Confidence 57889999999999999999999999999999987610 1289999999876432211000000011222222
Q ss_pred HHh--hhcc---CcEEEEEec---CCCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VSKS---SDIVLMVLD---ASKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... ..+. .+.+...+. ..........+.++|+.+++. +++++.+|||||+||++|| ++
T Consensus 105 ~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~lli 184 (330)
T PRK09473 105 DPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLI 184 (330)
T ss_pred CchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 210 0000 010100000 111122345677889998882 4678999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCCh
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+||||++||......+++.+ ... + ++|++|||.... .++| .++|++..-++..
T Consensus 185 lDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~D----------ri~vm~~G~ive~ 243 (330)
T PRK09473 185 ADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICD----------KVLVMYAGRTMEY 243 (330)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCC----------EEEEEECCEEEEE
Confidence 99999999999866665544 332 4 899999996644 3443 4677777665543
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-24 Score=190.00 Aligned_cols=165 Identities=16% Similarity=0.153 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++....... .......++..|
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 84 (240)
T PRK09493 18 HNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEI-----------TSGDLIVDGLKVNDPKVDE--RLIRQEAGMVFQ 84 (240)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCcCChhH--HHHhhceEEEec
Confidence 578888899999999999999999999999999887 8999999998653210000 000011111111
Q ss_pred HHhhhcc---CcEEEEEe---cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+.. .+.+.+.. ...........+.++++.+++ ..++++..||+||+||+++| +++||||
T Consensus 85 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~ 164 (240)
T PRK09493 85 QFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPT 164 (240)
T ss_pred ccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111110 11111100 001112233456788999998 56888999999999999988 8999999
Q ss_pred CCCCHHHHHHHHHHh---cc-cCcEEEecCCCCh-hhHHH
Q 021103 196 THVDEKLCYQILHEY---KI-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~-~~~~i~~shd~~~-~~~~~ 230 (317)
++||+.....+.+.+ .. ..++|++||+... ..++|
T Consensus 165 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 204 (240)
T PRK09493 165 SALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVAS 204 (240)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 999999865554444 33 3489999999553 34443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-24 Score=195.84 Aligned_cols=178 Identities=16% Similarity=0.130 Sum_probs=116.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~ 130 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| ..|.|.++|.++...... .. ...+...++.
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~~ig~v 90 (286)
T PRK13646 23 IHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKP-----------TTGTVTVDDITITHKTKDKYI-RPVRKRIGMV 90 (286)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEECccccccchH-HHHHhheEEE
Confidence 3578889999999999999999999999999999988 899999999876321100 00 0011112222
Q ss_pred HHHH--hhh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 131 RQVI--AVS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 131 ~~~~--~~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+|.. ..+ ...+.+.+.... .......+.+.++|+.+|+ ..++.+..||+||+||++|| +++|
T Consensus 91 ~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlD 170 (286)
T PRK13646 91 FQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLD 170 (286)
T ss_pred ecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 2211 000 111222111111 1122234467788999998 35678999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. .+ ++|++||+.+ +.+.+| .++++++.-+.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~d----------ri~~l~~G~i~ 225 (286)
T PRK13646 171 EPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYAD----------EVIVMKEGSIV 225 (286)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866554444 32 24 9999999965 344444 45666655443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-24 Score=191.31 Aligned_cols=178 Identities=17% Similarity=0.158 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCcc--------ccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGII--------EGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~--------~~~ 123 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.... ..+.. ...
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 90 (257)
T PRK10619 22 KGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGSIVVNGQTINLVRDKDGQLKVADKNQLRLL 90 (257)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccccccccccccchHHHHH
Confidence 578888899999999999999999999999999887 8899999998764210 00000 000
Q ss_pred cCCchhHHHHHhhhc---cCcEEEEEe---cCCCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE------
Q 021103 124 SEGKGRGRQVIAVSK---SSDIVLMVL---DASKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia------ 188 (317)
....++..|....+. ..+++.+.. ...........+.++++.+++ . .++++..||+||+||+.+|
T Consensus 91 ~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~ 170 (257)
T PRK10619 91 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 170 (257)
T ss_pred hhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 111122112111111 111111100 001112234567788999999 2 3788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHH---hccc-CcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHE---YKIH-NAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~---l~~~-~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+.+. +... .++|++|||... ..+|| .+++++...+.
T Consensus 171 p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 231 (257)
T PRK10619 171 PEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS----------HVIFLHQGKIE 231 (257)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 999999999999986655554 4333 489999999553 33343 35666655443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=191.99 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .....++..+
T Consensus 19 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 84 (242)
T TIGR03411 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRP-----------DEGSVLFGGTDLTGLPEHQI---ARAGIGRKFQ 84 (242)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCeecCCCCHHHH---HhcCeeEecc
Confidence 578889999999999999999999999999999888 89999999976532110000 0001111111
Q ss_pred HHhhhcc---CcEEEEEec--------C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS---SDIVLMVLD--------A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--------~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... . .........+.++++.+++ ..++++..||+||+||+.+|
T Consensus 85 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~ 164 (242)
T TIGR03411 85 KPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKL 164 (242)
T ss_pred ccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 111111000 0 0111234467788999998 56888999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ....++|++||+.+. ..+|+
T Consensus 165 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 210 (242)
T TIGR03411 165 LLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIAD 210 (242)
T ss_pred EEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 9999999999999866555544 343599999999553 34443
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=182.84 Aligned_cols=153 Identities=23% Similarity=0.308 Sum_probs=119.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
+++||++..|+.+||||.+|||||||-++|+|+..| ++|.|.++|.++..++
T Consensus 30 d~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~p-----------t~G~i~f~g~~i~~~~----------------- 81 (268)
T COG4608 30 DGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEP-----------TSGEILFEGKDITKLS----------------- 81 (268)
T ss_pred cceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCC-----------CCceEEEcCcchhhcc-----------------
Confidence 578999999999999999999999999999999998 8999999998754321
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.....+++.++|+.+|+ .+.++|.+|||||+||++|| +++|||+|+||.
T Consensus 82 -------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDv 142 (268)
T COG4608 82 -------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDV 142 (268)
T ss_pred -------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcch
Confidence 22234568889999998 68999999999999999998 899999999999
Q ss_pred HHHHHHH---HHhcc-cC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 201 KLCYQIL---HEYKI-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 201 ~~~~~~l---~~l~~-~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
....+++ ..++. .+ +.+++|||..+.+.+ .+.+.|+...-++..+..+.+..
T Consensus 143 SiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i---------sdri~VMy~G~iVE~g~~~~~~~ 199 (268)
T COG4608 143 SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI---------SDRIAVMYLGKIVEIGPTEEVFS 199 (268)
T ss_pred hHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh---------cccEEEEecCceeEecCHHHHhh
Confidence 7655554 44443 34 999999997655432 33567777666665444444433
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-24 Score=198.80 Aligned_cols=178 Identities=19% Similarity=0.174 Sum_probs=118.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+ .+|.|.++|.++.-.+...+ ...+..+++++|
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-----------~~G~i~~~g~~l~~~~~~~~-~~~r~~i~~v~Q 99 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETP-----------TGGELYYQGQDLLKADPEAQ-KLLRQKIQIVFQ 99 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEEcCcCCHHHH-HHHhCCEEEEEc
Confidence 578899999999999999999999999999999987 78999999987632210000 000111222222
Q ss_pred HHh--hhcc---CcEEEEEe--c-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VSKS---SDIVLMVL--D-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~--~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .... .+.+...+ . ........+.+.++|+.+++ .+++++.+|||||+||++|| +++|
T Consensus 100 ~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilD 179 (327)
T PRK11308 100 NPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179 (327)
T ss_pred CchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 110 0000 00010000 0 01122234567889999998 36889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|||++||......+++.+ .. .+ ++|++|||.... .++| .++|+....++.
T Consensus 180 EPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~ad----------rv~vm~~G~ive 235 (327)
T PRK11308 180 EPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIAD----------EVMVMYLGRCVE 235 (327)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEEE
Confidence 999999999866665555 33 24 999999996554 3443 466777665553
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-24 Score=194.77 Aligned_cols=176 Identities=21% Similarity=0.179 Sum_probs=116.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.... .+.. ......++.+|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~~-~~~~~ig~v~q 90 (287)
T PRK13637 24 DNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKP-----------TSGKIIIDGVDITDKK-VKLS-DIRKKVGLVFQ 90 (287)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEECCCcC-ccHH-HHhhceEEEec
Confidence 578889999999999999999999999999999988 8999999998763211 0000 00111222222
Q ss_pred HH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.. .. ....+.+.+... ........+.+.++++.+++. .++++..|||||+||++|| +++||
T Consensus 91 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDE 170 (287)
T PRK13637 91 YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDE 170 (287)
T ss_pred CchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 11 00 011122211111 111222334677889999983 6788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---Hhccc-C-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILH---EYKIH-N-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~---~l~~~-~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+++ .+... + ++|++|||... ..+|| .++++...-+.
T Consensus 171 Pt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d----------rv~~l~~G~i~ 224 (287)
T PRK13637 171 PTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLAD----------RIIVMNKGKCE 224 (287)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999998655544 44332 4 99999999553 34444 45566555443
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=198.43 Aligned_cols=168 Identities=15% Similarity=0.206 Sum_probs=133.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
++++++.+..|++.||+|.||||||||+++|.|.+.| ++|+|+++|+++.+-+ | .+..+.++++++
T Consensus 20 nd~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P-----------~~GeI~v~G~~v~~~s-P--~dA~~~GIGMVh 85 (501)
T COG3845 20 NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQP-----------DSGEIRVDGKEVRIKS-P--RDAIRLGIGMVH 85 (501)
T ss_pred cCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccC-----------CcceEEECCEEeccCC-H--HHHHHcCCcEEe
Confidence 6788999999999999999999999999999999999 9999999999987632 2 233456788899
Q ss_pred HHHhhhccCcEE---EEEecCC-----CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 132 QVIAVSKSSDIV---LMVLDAS-----KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 132 ~~~~~~~~~d~i---~~v~~~~-----~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
|++.+++...+. ++..... +.....+++.++.+++|+ ..+.++..||-|++||+.|. ||+|
T Consensus 86 QHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILD 165 (501)
T COG3845 86 QHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILD 165 (501)
T ss_pred eccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEc
Confidence 988877665444 3333211 122345678888999999 88899999999999999887 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCC-CChhhHHHHHh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFRED-ATVDDLIDVIE 233 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd-~~~~~~~~~~~ 233 (317)
|||+-|.|..+.+++..+ ...+ ++|++||- .++.+++|++.
T Consensus 166 EPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvT 211 (501)
T COG3845 166 EPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVT 211 (501)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeE
Confidence 999999999877665555 4444 99999998 56667777653
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-24 Score=194.49 Aligned_cols=165 Identities=15% Similarity=0.141 Sum_probs=110.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| ++|.|.++|.++...+... .....++.+
T Consensus 20 l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 84 (277)
T PRK13652 20 LNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKP-----------TSGSVLIRGEPITKENIRE----VRKFVGLVF 84 (277)
T ss_pred eeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheEEEe
Confidence 3678899999999999999999999999999999888 8999999998653211100 000111111
Q ss_pred HHHh--h--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--V--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... . ....+.+.+... ........+.+.++++.+++ ..++.+..||+||+||+.+| +++|||
T Consensus 85 q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEP 164 (277)
T PRK13652 85 QNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEP 164 (277)
T ss_pred cCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1100 0 000111111000 11122223457788999998 67889999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHH---hccc-C-cEEEecCCCCh-hhHHHH
Q 021103 195 LTHVDEKLCYQILHE---YKIH-N-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 195 t~~LD~~~~~~~l~~---l~~~-~-~~i~~shd~~~-~~~~~~ 231 (317)
|++||+.....+.+. +... + ++|++||+... .+.||+
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~dr 207 (277)
T PRK13652 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADY 207 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 999999886655444 4332 4 89999999553 455543
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-24 Score=191.48 Aligned_cols=174 Identities=18% Similarity=0.123 Sum_probs=111.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++..+
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 87 (237)
T PRK11614 22 HEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRA-----------TSGRIVFDGKDITDWQTA---KIMREAVAIVPE 87 (237)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCceEEECCEecCCCCHH---HHHHhCEEEecc
Confidence 578899999999999999999999999999999988 899999999765321100 000111111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHc-cc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~-~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+++.+.............+.++++.+ ++ ..+.++..||+||+||+.+| +++||||++
T Consensus 88 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~ 167 (237)
T PRK11614 88 GRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLG 167 (237)
T ss_pred CcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCcccc
Confidence 1111110 111111000011111223455666666 35 45678899999999999988 899999999
Q ss_pred CCHHHHHHHHH---Hhccc-CcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccC
Q 021103 198 VDEKLCYQILH---EYKIH-NAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 198 LD~~~~~~~l~---~l~~~-~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
||+.....+.+ .+... .++|++||+.+ +.+.+| .++++++..+
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d----------~i~~l~~G~i 215 (237)
T PRK11614 168 LAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLAD----------RGYVLENGHV 215 (237)
T ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCC----------EEEEEeCCEE
Confidence 99998655544 44333 49999999954 555444 4556665443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-24 Score=200.04 Aligned_cols=183 Identities=12% Similarity=0.079 Sum_probs=116.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+|+||||||||+++|+|+..+- ..+.+|.|.++|.++...+...+.......+++++|
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~-------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q 96 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDN-------WRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQ 96 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCC-------CCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEec
Confidence 6788999999999999999999999999999998530 012689999999875322110000000011222222
Q ss_pred HHhh-h-c---cCcEEEEE-----ecC---CCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE------
Q 021103 133 VIAV-S-K---SSDIVLMV-----LDA---SKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 133 ~~~~-~-~---~~d~i~~v-----~~~---~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia------ 188 (317)
.... + . ..+.+... ... .........+.++|+.+++. +++++.+|||||+||++||
T Consensus 97 ~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 97 EPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred CcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 1100 0 0 00000000 000 01112345678899999992 4788999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+....++++.+. . .+ ++|++|||.... +++ ..++|+++.-++.
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~----------dri~vm~~G~ive 239 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA----------DKINVLYCGQTVE 239 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC----------CEEEEEECCEEEE
Confidence 99999999999988666555543 3 24 999999995544 444 3467777765543
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-24 Score=185.74 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.. +...+ ....++..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~-~~~~~----~~~i~~~~q 81 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP-----------EKGEILFERQSIKK-DLCTY----QKQLCFVGH 81 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeeEEECCCcccc-CHHHH----HhheEEecc
Confidence 578889999999999999999999999999999888 89999999876531 10000 001111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
..... ...+++.+..... . ....+.++++.+++ ..++++..||+||+||+++| +++||||++|
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~~-~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~L 158 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHFS-P--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVAL 158 (200)
T ss_pred ccccCcCCCHHHHHHHHHhcC-c--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccc
Confidence 10000 0011111110000 1 12356788888888 45778899999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCChhhHHHH
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATVDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~~~ 231 (317)
|+.....+.+.+. .. .++|++||+....+.+|+
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~ 195 (200)
T PRK13540 159 DELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADY 195 (200)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccch
Confidence 9998665555443 33 489999999776555543
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-24 Score=186.80 Aligned_cols=158 Identities=15% Similarity=0.110 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... .+ ....++..+
T Consensus 18 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-----------~~G~v~~~g~~~~~~~~-~~----~~~~~~~~~ 81 (204)
T PRK13538 18 SGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARP-----------DAGEVLWQGEPIRRQRD-EY----HQDLLYLGH 81 (204)
T ss_pred ecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccchH-Hh----hhheEEeCC
Confidence 578888999999999999999999999999999988 88999999977532110 00 000010000
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+.+.+...... ......+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 82 QPGIKTELTALENLRFYQRLHG-PGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred ccccCcCCcHHHHHHHHHHhcC-ccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 00000 00111100000011 1233567788999999 57888999999999999988 8999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCCChhh
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDATVDD 227 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~~~~~ 227 (317)
|+.....+.+.+. . ..++|++||+.+.-+
T Consensus 161 D~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 161 DKQGVARLEALLAQHAEQGGMVILTTHQDLPVA 193 (204)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEecChhhhc
Confidence 9998666555443 3 349999999965443
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-24 Score=194.20 Aligned_cols=160 Identities=19% Similarity=0.168 Sum_probs=110.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+.. ......++.+|
T Consensus 24 ~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-----------~~G~i~~~g~~i~~~~~~----~~~~~i~~~~q 88 (279)
T PRK13635 24 KDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLP-----------EAGTITVGGMVLSEETVW----DVRRQVGMVFQ 88 (279)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCcHH----HHhhheEEEEe
Confidence 578889999999999999999999999999999988 899999999875321100 00111222222
Q ss_pred HHh-hh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA-VS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~-~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+.... .........+.++++.+++ ..++.+..||+||+||+++| +++||||
T Consensus 89 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 168 (279)
T PRK13635 89 NPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEAT 168 (279)
T ss_pred CHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 110 01 112222221111 1112223457888999998 68889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhh
Q 021103 196 THVDEKLCYQILHEY---KIH-N-AEVLFREDATVDD 227 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~ 227 (317)
++||+.....+.+.+ ... + +++++||+.....
T Consensus 169 ~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 169 SMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred ccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 999999866655544 332 4 8999999965443
|
|
| >KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=180.05 Aligned_cols=167 Identities=34% Similarity=0.477 Sum_probs=131.4
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+.++...-.-++|||.||||||||||+|+...+.|++|+|||+.|.-|.+.+++.. +...|.||+++.++.+.+++.+
T Consensus 188 ~~~lELKsiadvGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~ 267 (366)
T KOG1489|consen 188 VIELELKSIADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK 267 (366)
T ss_pred EEEEEeeeecccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHH
Confidence 445566666789999999999999999999999999999999999999999998765 8999999999999999999999
Q ss_pred HHhhhccCcEEEEEecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
++..+..++.++||+|.+... .+.+.+...|+.++
T Consensus 268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~ye---------------------------------------- 307 (366)
T KOG1489|consen 268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYE---------------------------------------- 307 (366)
T ss_pred HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHh----------------------------------------
Confidence 999999999999999986541 11222222222211
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-hh-HHHHhcC---CCeEEEeccccccHHHHHHH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DD-VDKLARQ---PNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-~~-~~~l~~~---~~~v~iSa~~~~~i~~l~~~ 282 (317)
.....+|.++|+||+|+... +. ++.+.+. +.++++||+.++++..|++.
T Consensus 308 --------------------------k~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~ 361 (366)
T KOG1489|consen 308 --------------------------KGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNG 361 (366)
T ss_pred --------------------------hhhccCceEEEEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHH
Confidence 01125799999999999533 33 2555543 34899999999999999998
Q ss_pred HHHH
Q 021103 283 MWEE 286 (317)
Q Consensus 283 i~~~ 286 (317)
|.+.
T Consensus 362 lr~~ 365 (366)
T KOG1489|consen 362 LREL 365 (366)
T ss_pred Hhhc
Confidence 8654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-24 Score=191.95 Aligned_cols=164 Identities=21% Similarity=0.224 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|..+| .+|.|.++|.++...+.... ......+.++
T Consensus 22 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~~~q 87 (255)
T PRK11300 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKP-----------TGGTILLRGQHIEGLPGHQI---ARMGVVRTFQ 87 (255)
T ss_pred EeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCC-----------CcceEEECCEECCCCCHHHH---HhcCeEEecc
Confidence 577888889999999999999999999999999888 89999999976532110000 0000110011
Q ss_pred HHhhhc---cCcEEEE-------------EecC---C-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--
Q 021103 133 VIAVSK---SSDIVLM-------------VLDA---S-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~-------------v~~~---~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-- 188 (317)
....+. ..+++.+ ..+. . ........+.++++.+++ ..++++.+||+||+||+.+|
T Consensus 88 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a 167 (255)
T PRK11300 88 HVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARC 167 (255)
T ss_pred CcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHH
Confidence 100000 0011100 0000 0 001123456778889998 67889999999999999998
Q ss_pred -------eeecCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHH
Q 021103 189 -------FNSTLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATV-DDLID 230 (317)
Q Consensus 189 -------lilDEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ... + ++|++||+... .++||
T Consensus 168 l~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d 222 (255)
T PRK11300 168 MVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISD 222 (255)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999866554444 332 4 89999999553 34443
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-24 Score=197.44 Aligned_cols=178 Identities=18% Similarity=0.117 Sum_probs=117.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-------cC------CC
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-------DL------PG 118 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-------d~------~g 118 (317)
-.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-. .. ..
T Consensus 42 L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~ 110 (320)
T PRK13631 42 LNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKS-----------KYGTIQVGDIYIGDKKNNHELITNPYSKKIKN 110 (320)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEECCEEcccccccccccccccccccch
Confidence 3678899999999999999999999999999999988 899999999765310 00 00
Q ss_pred ccccccCCchhHHHHH--hhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-
Q 021103 119 IIEGASEGKGRGRQVI--AVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~--~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia- 188 (317)
. ...+...++.+|.. ..+ ...+.+.+... ..........+.++++.+++ ..++.+.+|||||+||++||
T Consensus 111 ~-~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAr 189 (320)
T PRK13631 111 F-KELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAG 189 (320)
T ss_pred H-HHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHH
Confidence 0 00011122222211 001 00111111110 01112233457788999998 36788999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.+...+++.+. ..+ |+|++||+.+ +.+++| .+++++..-+.
T Consensus 190 aL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~ad----------ri~vl~~G~i~ 255 (320)
T PRK13631 190 ILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVAD----------EVIVMDKGKIL 255 (320)
T ss_pred HHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999999998766655553 334 9999999965 445443 46677766554
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-23 Score=189.17 Aligned_cols=166 Identities=14% Similarity=0.119 Sum_probs=109.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ... ......++.+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~-~~~-~~~~~i~~v~ 83 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRP-----------QKGAVLWQGKPLDYSKR-GLL-ALRQQVATVF 83 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CccEEEECCEEcccccC-CHH-HHHhheEEEe
Confidence 3578889999999999999999999999999999988 89999999987631111 000 0011111111
Q ss_pred HHHh--hh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA--VS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~--~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ..........+.++++.+++ ..++++..|||||+||+.+| +++|||
T Consensus 84 q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEP 163 (271)
T PRK13638 84 QDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEP 163 (271)
T ss_pred eChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 00 00111111111 01111223456778889998 57888999999999999998 899999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~ 230 (317)
|++||+.....+++.+ ...+ ++|++|||... .+++|
T Consensus 164 t~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d 204 (271)
T PRK13638 164 TAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISD 204 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 9999999865554444 3334 89999999653 34444
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-24 Score=187.42 Aligned_cols=161 Identities=17% Similarity=0.172 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ....++.++
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~------~~~i~~~~q 78 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTP-----------ASGSLTLNGQDHTTTPPS------RRPVSMLFQ 78 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCeecCcCChh------hccEEEEec
Confidence 378889999999999999999999999999999988 889999999865321100 011111111
Q ss_pred HHhhh---ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||+.++ +++||||+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 11111 111222111111 1112234567888999999 67889999999999999988 99999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+... .++++
T Consensus 159 gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 159 ALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99999865554444 32 3389999999663 44444
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-24 Score=191.65 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=114.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++.+|
T Consensus 28 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~-~~~~~~i~~v~q 95 (265)
T TIGR02769 28 TNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKP-----------AQGTVSFRGQDLYQLDRKQR-RAFRRDVQLVFQ 95 (265)
T ss_pred eCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEccccCHHHH-HHHhhceEEEec
Confidence 578899999999999999999999999999999888 89999999987542211000 000011111111
Q ss_pred HHh--hh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .. ...+++.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|
T Consensus 96 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLD 175 (265)
T TIGR02769 96 DSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLD 175 (265)
T ss_pred ChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 110 00 00111100000 01112234467788999998 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+ +..+.. ..++|++||+.... .++| .++++++..+.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 230 (265)
T TIGR02769 176 EAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQ----------RVAVMDKGQIV 230 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhc----------EEEEEeCCEEE
Confidence 99999999875554 444433 34999999996543 3443 46666665443
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.9e-24 Score=187.76 Aligned_cols=165 Identities=19% Similarity=0.116 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC-----CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH-----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~-----~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++++.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+. .. .......
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~-----------~~G~i~~~g~~~~~~~~-~~-~~~~~~i 83 (227)
T cd03260 17 KDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP-----------DEGEVLLDGKDIYDLDV-DV-LELRRRV 83 (227)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC-----------CCeEEEECCEEhhhcch-HH-HHHHhhE
Confidence 5788899999999999999999999999999998 66 88999999987532210 00 0000111
Q ss_pred hhHHHHHhhh--ccCcEEEEEecCC--Cc-hhhHHHHHHHHHHccc--ccccc--CCcccccceeeeeeE---------e
Q 021103 128 GRGRQVIAVS--KSSDIVLMVLDAS--KS-EGHRQILTKELEAVGL--RLNKR--PPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 128 ~~~~~~~~~~--~~~d~i~~v~~~~--~~-~~~~~~~~~~L~~~~l--~~~~~--~~~LS~g~~qr~~ia---------l 189 (317)
++.+|....+ ...+++.+..... .. ....+.+.++++.+++ ..++. +.+||+||+||+++| +
T Consensus 84 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (227)
T cd03260 84 GMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVL 163 (227)
T ss_pred EEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 1111111111 1112121111101 11 1123567788999998 34555 599999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.....+.+.+. ...++|++|||... .+++|
T Consensus 164 llDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 208 (227)
T cd03260 164 LLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVAD 208 (227)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCC
Confidence 9999999999998666655553 23589999999653 44443
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-24 Score=189.71 Aligned_cols=167 Identities=15% Similarity=0.128 Sum_probs=108.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc--cccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~--~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.......- ........++.
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~ 87 (242)
T PRK11124 19 FDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMV 87 (242)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEecccccccchhhHHHHHhheEEE
Confidence 577888889999999999999999999999999887 89999999986521100000 00000111111
Q ss_pred HHHHhhhcc---CcEEEE-Eec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 131 RQVIAVSKS---SDIVLM-VLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~-v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
+|....+.. .+.+.+ ... ..........+.++++.+++ ..++.+..||+||+||+++| +++||
T Consensus 88 ~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 167 (242)
T PRK11124 88 FQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred ecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111111 111110 000 01111223457788899998 57888999999999999988 89999
Q ss_pred CCCCCCHHHHHHHHHHhc---c-cCcEEEecCCCChh-hHHH
Q 021103 194 PLTHVDEKLCYQILHEYK---I-HNAEVLFREDATVD-DLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~---~-~~~~i~~shd~~~~-~~~~ 230 (317)
||++||+.....+.+.+. . ..++|++||+.... +++|
T Consensus 168 Pt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d 209 (242)
T PRK11124 168 PTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTAS 209 (242)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcC
Confidence 999999998665555443 3 34899999996543 4443
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-24 Score=186.38 Aligned_cols=159 Identities=15% Similarity=0.078 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ....++..+
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~i~~~~~-------~~~i~~~~q 89 (214)
T PRK13543 28 GPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHV-----------ESGQIQIDGKTATRGDR-------SRFMAYLGH 89 (214)
T ss_pred ecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCEEccchhh-------hhceEEeec
Confidence 578888899999999999999999999999999988 88999999876531100 000111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+.+.+...... ....+.+.++++.+++ ..++++..||+||+||++++ +++||||++|
T Consensus 90 ~~~~~~~~t~~e~l~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 168 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCGLHG-RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANL 168 (214)
T ss_pred CcccccCCcHHHHHHHHHHhcC-CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 1000000 011100000001 1123456678888888 57888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 199 DEKLCYQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 169 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 169 DLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 999866554444 33 349999999954 445544
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-24 Score=183.39 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... ......++..+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-----~~~~~i~~~~q 80 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRP-----------DSGEVRWNGTALAEQRD-----EPHRNILYLGH 80 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccchH-----HhhhheEEecc
Confidence 577888889999999999999999999999999888 88999999987542210 00011111111
Q ss_pred HHhhhc---cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+. ..+++.+....... ....+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 158 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGG--AQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTAL 158 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCC--cHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 100000 01111111011111 12356788899998 57888999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cCcEEEecCCC
Q 021103 199 DEKLCYQILHEYK---I-HNAEVLFREDA 223 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~~~i~~shd~ 223 (317)
|+.....+.+.+. . ..++|++||+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tii~~sH~~ 187 (198)
T TIGR01189 159 DKAGVALLAGLLRAHLARGGIVLLTTHQD 187 (198)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEEccc
Confidence 9988666555543 2 34899999985
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-24 Score=189.26 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=108.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+..- .....++.+|
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (242)
T cd03295 18 NNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEP-----------TSGEIFIDGEDIREQDPVE----LRRKIGYVIQ 82 (242)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCeEcCcCChHH----hhcceEEEcc
Confidence 578889999999999999999999999999999887 8899999997653221100 0011111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+.. .+.+.+.. ...........+.++++.+++. .++++.+||+||+||+++| +++|||
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 162 (242)
T cd03295 83 QIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEP 162 (242)
T ss_pred CccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 1111110 11111110 0111122334577889999883 4778899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+. . ..++|++||+.. +.+++|
T Consensus 163 t~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d 204 (242)
T cd03295 163 FGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLAD 204 (242)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 99999998665555443 2 348999999964 444443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=188.23 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=108.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-----eEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-----PGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-----~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++++.+|++++|+|+||||||||+++|+|...| . +|.|.++|.++..... .. .......
T Consensus 18 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~~~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i 84 (247)
T TIGR00972 18 KNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDL-----------VPGVRIEGKVLFDGQDIYDKKI-DV-VELRRRV 84 (247)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CcCCCCceEEEECCEEcccccc-ch-HHHHhhe
Confidence 578899999999999999999999999999999977 5 8999999987632100 00 0001111
Q ss_pred hhHHHHHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++.+|....+ ...+++.+..... ........+.++++.+++. .++++..||+||+||+.+|
T Consensus 85 ~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 164 (247)
T TIGR00972 85 GMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPE 164 (247)
T ss_pred EEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 1111111111 1111111111111 1122234567788888873 4678899999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+. ...++|++||+.+ +.+++|
T Consensus 165 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 165 VLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISD 211 (247)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCC
Confidence 99999999999998666555443 3359999999965 445444
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd01899 Ygr210 Ygr210 subfamily | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=187.07 Aligned_cols=221 Identities=25% Similarity=0.273 Sum_probs=151.3
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------C---CeeEEEecCCCcc
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------N---DTKIQLLDLPGII 120 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~---g~~i~~~d~~g~~ 120 (317)
++|+|.||+|||||||+|++....+++|||||++|+.|.+.+ + +.+++++|+||+.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 589999999999999999999888999999999999998875 2 2578999999998
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCC---------------chhhHHHHHHHHHHccc-cccccCCcccccceee
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK---------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKT 184 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~---------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr 184 (317)
+....+.+...+++..++.+|++++++|... +..+.+.+...|..+.+ .+.+++..++...+ +
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~-~ 159 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKAD-A 159 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c
Confidence 8777777777888889999999999998752 22344556666665433 22333222221000 0
Q ss_pred e--eeEeeecCCCC--CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-HH
Q 021103 185 G--GISFNSTLPLT--HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-KL 259 (317)
Q Consensus 185 ~--~ialilDEPt~--~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-~l 259 (317)
. .+...+....+ +.+...+..+|+. ....+.+....+.+++++.+.+.. ..+|+|+|+||+|+...+... .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~~~~~~~~~~~ll--t~KPvI~VlNK~Dl~~~~~~~~~l 236 (318)
T cd01899 160 EKTDIVEALSEQLSGFGVNEKDVIEALEE-LELPEDLSKWTDEDLLRLARALRK--RSKPMVIAANKADIPDAENNISKL 236 (318)
T ss_pred CCccHHHHHHHHHhhccccHHHHHHHHHh-CCCCCcccCCCHHHHHHHHHHHHh--cCCcEEEEEEHHHccChHHHHHHH
Confidence 0 00000111122 4455666666644 222344445556667777666553 368999999999986544322 22
Q ss_pred ---hcCCCeEEEeccccccHHHHHH-HHHHHhCe
Q 021103 260 ---ARQPNSVVISCNLKLNLDRLLA-RMWEEMGL 289 (317)
Q Consensus 260 ---~~~~~~v~iSa~~~~~i~~l~~-~i~~~l~~ 289 (317)
..+..++++||+.+.++++|.+ .+.+.++.
T Consensus 237 ~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 237 RLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred HhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 2245699999999999999998 69999864
|
Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-24 Score=191.31 Aligned_cols=163 Identities=15% Similarity=0.156 Sum_probs=108.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+...+ ....++.+|
T Consensus 28 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 92 (265)
T PRK10575 28 HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPP-----------SEGEILLDAQPLESWSSKAF----ARKVAYLPQ 92 (265)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEehhhCCHHHH----hhheEEecc
Confidence 577888889999999999999999999999999887 89999999976532111000 001111111
Q ss_pred HHhhh---ccCcEEEEE---ecC---CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMV---LDA---SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v---~~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+. ... .......+.+.++++.+++ ..++++.+||+||+||+.+| +++|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 172 (265)
T PRK10575 93 QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172 (265)
T ss_pred CCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 10000 001111110 000 0111233457788999998 57889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+ +..+.. ..++|++||+.. +.+++|
T Consensus 173 EPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999999986555 444433 348999999955 334443
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-24 Score=207.16 Aligned_cols=166 Identities=16% Similarity=0.190 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 86 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTR-----------DAGSILYLGKEVTFNGPK---SSQEAGIGIIHQ 86 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCEEEEEc
Confidence 578889999999999999999999999999999988 899999999775321100 000112222223
Q ss_pred HHhhh---ccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++.+|||||+||+.|| +++|
T Consensus 87 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLD 166 (501)
T PRK10762 87 ELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMD 166 (501)
T ss_pred chhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 22111 112222221110 0111223457788999999 56888999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHH---HHhcccC-cEEEecCCCC-hhhHHHHH
Q 021103 193 LPLTHVDEKLCYQIL---HEYKIHN-AEVLFREDAT-VDDLIDVI 232 (317)
Q Consensus 193 EPt~~LD~~~~~~~l---~~l~~~~-~~i~~shd~~-~~~~~~~~ 232 (317)
|||++||+.....++ ..+...+ ++|++|||.. +..+||++
T Consensus 167 EPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i 211 (501)
T PRK10762 167 EPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDV 211 (501)
T ss_pred CCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 999999999866654 4444334 8999999954 45666543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=186.81 Aligned_cols=161 Identities=16% Similarity=0.096 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~----~~~~i~~~~q 84 (241)
T PRK14250 20 KDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDP-----------TEGSILIDGVDIKTIDVID----LRRKIGMVFQ 84 (241)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEhhhcChHH----hhhcEEEEec
Confidence 578888899999999999999999999999999887 8999999998753221100 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+.+.+..... . .....+.++++.+++ ..++++..||+||+||+++| +++||||++|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 162 (241)
T PRK14250 85 QPHLFEGTVKDNIEYGPMLK-G-EKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSAL 162 (241)
T ss_pred CchhchhhHHHHHhcchhhc-C-cHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11111 0011111110001 1 123456778888888 35788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+.+.+ .. ..++|++||+... .+++|
T Consensus 163 D~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d 200 (241)
T PRK14250 163 DPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGD 200 (241)
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCC
Confidence 999866554444 32 3499999999553 44443
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-24 Score=187.22 Aligned_cols=161 Identities=16% Similarity=0.103 Sum_probs=107.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ......++.+
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~~~ 87 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISP-----------TSGTLLFEGEDISTLKPE----IYRQQVSYCA 87 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEcCcCCHH----HHHhccEEEe
Confidence 3678899999999999999999999999999999887 899999998765322110 0001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
|....+ ...+.+.+.............+.++++.+++ ..++++.+||+||+||++++ +++||||++
T Consensus 88 q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 167 (225)
T PRK10247 88 QTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSA 167 (225)
T ss_pred cccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 111111 0011111111111111123456788999988 35788999999999999998 899999999
Q ss_pred CCHHHHHHHHH---Hhcc--cCcEEEecCCCChhh
Q 021103 198 VDEKLCYQILH---EYKI--HNAEVLFREDATVDD 227 (317)
Q Consensus 198 LD~~~~~~~l~---~l~~--~~~~i~~shd~~~~~ 227 (317)
||+.....+.+ .+.. ..++|++||+.+...
T Consensus 168 LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 168 LDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 99998665544 4432 338999999976443
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=199.06 Aligned_cols=180 Identities=16% Similarity=0.174 Sum_probs=125.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+|+.+||+|+||||||||+++|+|..+| ++|+|.++|.+..-++...++++ ..++.|
T Consensus 338 ~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~-----------~~G~I~vng~~l~~l~~~~~~k~----i~~v~Q 402 (559)
T COG4988 338 SDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAP-----------TQGEIRVNGIDLRDLSPEAWRKQ----ISWVSQ 402 (559)
T ss_pred CCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCccccccCHHHHHhH----eeeeCC
Confidence 578889999999999999999999999999999998 89999999988765543333221 111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c----------ccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R----------LNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~----------~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+.. .+++.+. ++....+.+.+.++..++ . +...-..|||||+||+++| +
T Consensus 403 ~p~lf~gTireNi~l~----~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 403 NPYLFAGTIRENILLA----RPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred CCccccccHHHHhhcc----CCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 2222211 2333222 122234456667776665 1 2223345999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
++||||+|||.++-..+++.+ ....+++++||+..... ...+|+|+|+.-++..+..+++.+
T Consensus 479 llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~----------~~D~I~vld~G~l~~~g~~~~L~~ 543 (559)
T COG4988 479 LLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA----------DADRIVVLDNGRLVEQGTHEELSE 543 (559)
T ss_pred EecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh----------cCCEEEEecCCceeccCCHHHHhh
Confidence 999999999999855555544 45579999999966543 356799999988776655555543
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-24 Score=190.94 Aligned_cols=175 Identities=18% Similarity=0.130 Sum_probs=115.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-.+... .....++..
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~ 89 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKV-----------KSGEIFYNNQAITDDNFEK----LRKHIGIVF 89 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHH----HHhheeEEE
Confidence 3578899999999999999999999999999999988 8999999998653211100 001111111
Q ss_pred HHHh-hhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+.. .+.+.+... ..........+.++++.+++ ..++++..||+||+||+++| +++|||
T Consensus 90 q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (269)
T PRK13648 90 QNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEA 169 (269)
T ss_pred eChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 0000 111111111 01111223456788899998 57888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHH---Hhcc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILH---EYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+.+ .+.. ..++|++||+......+ ..++++++..+.
T Consensus 170 t~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~----------d~i~~l~~G~i~ 221 (269)
T PRK13648 170 TSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEA----------DHVIVMNKGTVY 221 (269)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcC----------CEEEEEECCEEE
Confidence 99999998665544 4433 23899999996543323 346667765544
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=190.12 Aligned_cols=175 Identities=13% Similarity=0.071 Sum_probs=117.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++..... . .......++.+|
T Consensus 27 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~--~-~~~~~~i~~v~q 92 (280)
T PRK13633 27 DDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP-----------SEGKVYVDGLDTSDEEN--L-WDIRNKAGMVFQ 92 (280)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEecccccc--H-HHHhhheEEEec
Confidence 578888899999999999999999999999999988 89999999987532110 0 001111222222
Q ss_pred HHh--hh--ccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--VS--KSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~~--~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... .+ ...+.+.+.... .........+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 93 ~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 172 (280)
T PRK13633 93 NPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172 (280)
T ss_pred ChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 110 00 011222221111 1122234567888999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHHHHHhc---c-cC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEYK---I-HN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+.+.+. . .+ ++|++||+.+....+ ..++++++.-+.
T Consensus 173 ~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~----------d~v~~l~~G~i~ 223 (280)
T PRK13633 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEA----------DRIIVMDSGKVV 223 (280)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcC----------CEEEEEECCEEE
Confidence 9999998666555443 2 24 899999996654323 346666655443
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=185.66 Aligned_cols=163 Identities=19% Similarity=0.189 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..+
T Consensus 18 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 82 (256)
T TIGR03873 18 DGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRP-----------DAGTVDLAGVDLHGLSRRA----RARRVALVEQ 82 (256)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCCEEEECCEEcccCCHHH----HhhheEEecc
Confidence 577888889999999999999999999999999888 8899999998764321100 0001111111
Q ss_pred HHhhh---ccCcEEEEEe------cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVL------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~------~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 83 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 162 (256)
T TIGR03873 83 DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLD 162 (256)
T ss_pred cCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11000 0011111100 000111233467788999998 57889999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCChh-hHHH
Q 021103 193 LPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVD-DLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~~-~~~~ 230 (317)
|||++||+.....+.+ .+... .++|++||+.... +++|
T Consensus 163 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 163 EPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred CccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999998655544 44333 4899999995543 4443
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=178.57 Aligned_cols=134 Identities=19% Similarity=0.198 Sum_probs=99.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. ......++.+|
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~~----~~~~~i~~~~q 80 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-----------SSGEILLDGKDLASLSPK----ELARKIAYVPQ 80 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCcCCHH----HHHHHHhHHHH
Confidence 577888899999999999999999999999999888 899999998765321100 00000111111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
+++.+++ ..++.+..||+||+||++++ +++||||++||+.
T Consensus 81 -----------------------------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~ 131 (180)
T cd03214 81 -----------------------------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIA 131 (180)
T ss_pred -----------------------------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 5666776 45778899999999999988 9999999999998
Q ss_pred HHHHHHH---Hhcc--cCcEEEecCCCCh-hhHHH
Q 021103 202 LCYQILH---EYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 202 ~~~~~l~---~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
....+.+ .+.. ..++|++||+.+. .+++|
T Consensus 132 ~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 132 HQIELLELLRRLARERGKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 8555544 4443 3489999999654 35444
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=200.32 Aligned_cols=186 Identities=19% Similarity=0.201 Sum_probs=125.5
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++||++..|+++||||.+|||||||.++|+|+..| .+|.+.++|.++. .. .+-.........+++
T Consensus 307 v~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P-----------~~G~i~~~g~~~~-~~-~~~~~~~r~~~QmvF 373 (539)
T COG1123 307 VDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP-----------SSGSIIFDGQDLD-LT-GGELRRLRRRIQMVF 373 (539)
T ss_pred eeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEEeCcccc-cc-cchhhhhhhheEEEE
Confidence 3688999999999999999999999999999999998 8999999887721 11 111111111122222
Q ss_pred HHHh--hhccC---cEEEEEecCCC---chhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIA--VSKSS---DIVLMVLDASK---SEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~--~~~~~---d~i~~v~~~~~---~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|... .-+.. +.+...+.... .....+++.++|+.+++ .++++|.+|||||+||++|| +++
T Consensus 374 Qdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~ 453 (539)
T COG1123 374 QDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLIL 453 (539)
T ss_pred eCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEe
Confidence 2111 00000 11111111111 12234568889999999 58999999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
||||+.||+.....+++.+. . .+ +.+++|||..+ ..+| ..+.|+...-++..+..+.+.
T Consensus 454 DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~----------drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 454 DEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA----------DRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhC----------ceEEEEECCeEEEeCCHHHHh
Confidence 99999999998666655554 2 34 99999999654 3444 457888888777554434443
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-24 Score=184.10 Aligned_cols=161 Identities=17% Similarity=0.177 Sum_probs=109.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-. +. .....++..|
T Consensus 15 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~--~~----~~~~i~~v~q 77 (213)
T TIGR01277 15 MEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEP-----------ASGSIKVNDQSHTGL--AP----YQRPVSMLFQ 77 (213)
T ss_pred eeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEcccC--Ch----hccceEEEec
Confidence 478899999999999999999999999999999988 899999999865311 00 0111122222
Q ss_pred HHhhhc---cCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.... .........+.++++.+++ ..++.+..||+||+||+.+| +++||||+
T Consensus 78 ~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 157 (213)
T TIGR01277 78 ENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFS 157 (213)
T ss_pred cCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 111111 11111111110 1111233457788999999 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+||+.....+.+.+ .. ..++|++||+... .+++|
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d 197 (213)
T TIGR01277 158 ALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIAS 197 (213)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 99999866555544 32 2389999999553 44444
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-24 Score=186.75 Aligned_cols=161 Identities=19% Similarity=0.164 Sum_probs=104.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .........++..|
T Consensus 22 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~~~~~~~~i~~~~q 89 (228)
T cd03257 22 DDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKP-----------TSGSIIFDGKDLLKLSRR-LRKIRRKEIQMVFQ 89 (228)
T ss_pred cCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEEccccchh-hHHHhhccEEEEec
Confidence 578888899999999999999999999999999888 899999999876422110 00000111111111
Q ss_pred HHh--hh---ccCcEEEEEecCC--Cc-hhhHHH-HHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA--VS---KSSDIVLMVLDAS--KS-EGHRQI-LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~~~--~~-~~~~~~-~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .. ...+++.+..... .. ...... +.++++.+++ ..++++..||+||+||+.+| +++
T Consensus 90 ~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 169 (228)
T cd03257 90 DPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIA 169 (228)
T ss_pred CchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 110 00 1111111111111 11 111122 2467888887 35788999999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~ 225 (317)
||||++||+.....+.+.+ .. ..++|++||+.+.
T Consensus 170 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~ 208 (228)
T cd03257 170 DEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGV 208 (228)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 9999999999866554444 33 3499999999653
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-24 Score=191.43 Aligned_cols=163 Identities=20% Similarity=0.163 Sum_probs=111.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ....++..
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~----~~~i~~v~ 89 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKP-----------QSGEIKIDGITISKENLKEI----RKKIGIIF 89 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEecCcCCHHHH----hcceEEEE
Confidence 3678899999999999999999999999999999988 89999999987632111111 11122212
Q ss_pred HHHh-h---hccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-V---SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~---~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... . ....+++.+.... .........+.++++.+++ ..++.+..||+||+||++++ +++|||
T Consensus 90 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 169 (271)
T PRK13632 90 QNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169 (271)
T ss_pred eCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 0 1112222211111 1112223457788999999 67889999999999999988 899999
Q ss_pred CCCCCHHHHHHHHHHh---ccc--CcEEEecCCCChhhHH
Q 021103 195 LTHVDEKLCYQILHEY---KIH--NAEVLFREDATVDDLI 229 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~--~~~i~~shd~~~~~~~ 229 (317)
|++||+.....+++.+ ... .++|++||+.+....+
T Consensus 170 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~ 209 (271)
T PRK13632 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILA 209 (271)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhC
Confidence 9999999866555544 332 4899999996544433
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-24 Score=187.76 Aligned_cols=162 Identities=17% Similarity=0.101 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR- 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~- 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++... ...+ ....++..
T Consensus 38 ~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~~~~~-~~~~----~~~i~~~~~ 101 (236)
T cd03267 38 KGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQP-----------TSGEVRVAGLVPWKR-RKKF----LRRIGVVFG 101 (236)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcccc-chhh----cccEEEEcC
Confidence 578888889999999999999999999999999888 899999998754210 0000 00111110
Q ss_pred HHHhh---hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
+.... +...+++.+... ..........+.++++.+++ ..++++..||+||+||+.++ +++||||
T Consensus 102 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 102 QKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 00000 000111111000 11112223456678888888 56888999999999999888 8999999
Q ss_pred CCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 196 THVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
++||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d 222 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCC
Confidence 9999998666555443 2 249999999965 344444
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-23 Score=188.06 Aligned_cols=162 Identities=19% Similarity=0.167 Sum_probs=107.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCcc------ccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGII------EGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~------~~~ 123 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ ..+.. ...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~ 85 (252)
T TIGR03005 17 DGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPI-----------DEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQM 85 (252)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccccccccccccchhHHHHH
Confidence 578889999999999999999999999999999888 8999999998764221 00000 000
Q ss_pred cCCchhHHHHHhhhcc---CcEEEEEe---cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 124 SEGKGRGRQVIAVSKS---SDIVLMVL---DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~---~d~i~~v~---~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
....++.+|....+.. .+++.+.. ...........+.++++.+++ ..++.+..||+||+||+.+|
T Consensus 86 ~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p 165 (252)
T TIGR03005 86 RNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRP 165 (252)
T ss_pred hhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCC
Confidence 1111111111111111 11111100 001111223456788999998 56788999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV 225 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~ 225 (317)
+++||||++||+.....+.+.+ .. ..++|++||+...
T Consensus 166 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~ 209 (252)
T TIGR03005 166 KVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGF 209 (252)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence 8999999999999866554444 33 2389999999653
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-23 Score=190.17 Aligned_cols=177 Identities=21% Similarity=0.175 Sum_probs=115.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++.....+ . .......++..
T Consensus 18 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 84 (275)
T PRK13639 18 LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKP-----------TSGEVLIKGEPIKYDKKS-L-LEVRKTVGIVF 84 (275)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEECccccch-H-HHHHhheEEEe
Confidence 3578899999999999999999999999999999987 899999999876311000 0 00001111111
Q ss_pred HHH--hhh--ccCcEEEEEe-c-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVI--AVS--KSSDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~--~~~--~~~d~i~~v~-~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|.. ..+ ...+.+.+.. + ..........+.++++.+++ ..++++.+||+||+||+.+| +++|||
T Consensus 85 q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 164 (275)
T PRK13639 85 QNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEP 164 (275)
T ss_pred eChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 110 000 1111111100 0 11111223457788999998 67888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEYK---IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+. ..+ +++++||+.+. .+.|| .++++++.-+.
T Consensus 165 t~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d----------~i~~l~~G~i~ 216 (275)
T PRK13639 165 TSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYAD----------KVYVMSDGKII 216 (275)
T ss_pred CcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999998666555443 334 89999999553 34443 45566655443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-24 Score=207.08 Aligned_cols=163 Identities=17% Similarity=0.180 Sum_probs=112.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+.. .......++..|
T Consensus 28 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 93 (510)
T PRK15439 28 KGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPP-----------DSGTLEIGGNPCARLTPA---KAHQLGIYLVPQ 93 (510)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCHH---HHHhCCEEEEec
Confidence 578889999999999999999999999999999988 899999999765321100 000011222222
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+... ......+.+.++++.+++ ..++++.+|||||+||+.|| +++||||++|
T Consensus 94 ~~~~~~~~tv~e~l~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~L 171 (510)
T PRK15439 94 EPLLFPNLSVKENILFGLP--KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASL 171 (510)
T ss_pred cCccCCCCcHHHHhhcccc--cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCC
Confidence 21111 11222222111 112234567888999999 67888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 199 DEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
|+.....+.+.+ ...+ ++|++|||.+ +.++||+
T Consensus 172 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 172 TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 999866655544 3334 8999999955 4455544
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=188.95 Aligned_cols=158 Identities=19% Similarity=0.208 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... ... .....++.+|
T Consensus 30 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~-~~~---~~~~i~~v~q 94 (267)
T PRK15112 30 KPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGELLIDDHPLHFGD-YSY---RSQRIRMIFQ 94 (267)
T ss_pred eeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCc-hhh---HhccEEEEec
Confidence 578899999999999999999999999999999988 8999999997753211 000 0011111111
Q ss_pred HHh--hhcc---CcEEEEEe--c-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA--VSKS---SDIVLMVL--D-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~v~--~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .... .+.+.+.. . ........+.+.++++.+++ ..+.++..||+||+||+++| +++|
T Consensus 95 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (267)
T PRK15112 95 DPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIAD 174 (267)
T ss_pred CchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEc
Confidence 110 0000 01110000 0 01111223457788999998 35677899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATV 225 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~ 225 (317)
|||++||+.....+.+.+ .. .+ ++|++||+.+.
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~ 212 (267)
T PRK15112 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGM 212 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence 999999999866554444 32 24 89999999543
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-23 Score=187.42 Aligned_cols=170 Identities=16% Similarity=0.085 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+. .. .......++..|
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~~-~~-~~~~~~i~~v~q 94 (253)
T PRK14242 23 HDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIP------GARVEGEILLDGENIYDPHV-DV-VELRRRVGMVFQ 94 (253)
T ss_pred cceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCC------CCCCceEEEECCEEcccccc-CH-HHHhhcEEEEec
Confidence 57888899999999999999999999999999863100 01268999999987532110 00 000111111111
Q ss_pred HHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.... .......+.+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 95 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllD 174 (253)
T PRK14242 95 KPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMD 174 (253)
T ss_pred CCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111110 01111111110 0111223456777888886 24778899999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.+++|
T Consensus 175 EPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d 216 (253)
T PRK14242 175 EPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSD 216 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCC
Confidence 999999999865554444 33348999999965 344444
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-23 Score=187.90 Aligned_cols=162 Identities=22% Similarity=0.178 Sum_probs=108.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe---cCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL---DLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~---d~~g~~~~~~~~~~~ 129 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++... ...++..+.....
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~-- 90 (272)
T PRK15056 24 RDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL-----------ASGKISILGQPTRQALQKNLVAYVPQSEEVD-- 90 (272)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEhHHhhccceEEEeccccccc--
Confidence 578889999999999999999999999999999888 899999999765210 0011111110000
Q ss_pred HHHHHhhhccCcEEEEEe-c---C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 130 GRQVIAVSKSSDIVLMVL-D---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~-~---~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
........+.+.+.. . . .........+.++++.+++ ..++++..||+||+||+++| +++|
T Consensus 91 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 167 (272)
T PRK15056 91 ---WSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLD 167 (272)
T ss_pred ---cCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 000000111111110 0 0 0111233456778899998 57889999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ...+ ++|++||+.+ +.++++
T Consensus 168 EPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d 210 (272)
T PRK15056 168 EPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCD 210 (272)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 999999999865554444 3334 8999999964 445444
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-23 Score=180.11 Aligned_cols=155 Identities=20% Similarity=0.175 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..... .++... . .+.
T Consensus 39 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~----~-tv~ 102 (224)
T cd03220 39 KDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPP-----------DSGTVTVRGRVSSLLGLGGGFNPE----L-TGR 102 (224)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEchhhcccccCCCC----C-cHH
Confidence 578889999999999999999999999999999887 89999999987542211 111110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+....... ............+.++++.+++ ..++++..||+||+||+.+| +++||||++||+
T Consensus 103 enl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 103 ENIYLNGR-------LLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHH-------HcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11111000 0001112223356677888888 56888999999999999988 999999999999
Q ss_pred HHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 201 KLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
.+...+.+.+ ... .++|++||+.. +..++|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d 210 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCD 210 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 8855554444 333 48999999954 344443
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.2e-24 Score=202.18 Aligned_cols=191 Identities=19% Similarity=0.139 Sum_probs=128.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+.+||+|.+||||||+.++|.|..++-. ...+|.|.++|.++.-.+..+........+.+.+|
T Consensus 26 ~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~-------~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 26 RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGG-------RITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred ecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCC-------cccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 68899999999999999999999999999999987611 11589999999865433222111111111222222
Q ss_pred HH-hhhccC----cEEEEEecCC---CchhhHHHHHHHHHHccc--cc--cccCCcccccceeeeeeE---------eee
Q 021103 133 VI-AVSKSS----DIVLMVLDAS---KSEGHRQILTKELEAVGL--RL--NKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~-~~~~~~----d~i~~v~~~~---~~~~~~~~~~~~L~~~~l--~~--~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. ..+... +-+.-+...+ ...+..+++.++|+.+++ .. +++|++|||||+||+.|| |++
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 11 001000 0000000011 133456678899999999 22 469999999999999888 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 192 TLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
||||++||.....++++.++ ..+ ++|++|||..+. ++ ...++|+.+..++..+..+.+.
T Consensus 179 DEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~----------aDrv~Vm~~G~iVE~G~~~~i~ 243 (539)
T COG1123 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL----------ADRVVVMYKGEIVETGPTEEIL 243 (539)
T ss_pred CCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHh----------cCeEEEEECCEEEEecCHHHHH
Confidence 99999999998777777665 234 899999996644 33 3568899999988766555544
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-24 Score=190.00 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=109.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.-.+...+ ....++.+|
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q 83 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTP-----------QSGTVFLGDKPISMLSSRQL----ARRLALLPQ 83 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CCcEEEECCEEhHHCCHHHH----hhheEEecc
Confidence 577888889999999999999999999999999887 88999999876532110000 001111111
Q ss_pred HHhhh---ccCcEEEEEe----c--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS---KSSDIVLMVL----D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~----~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.. . ..........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 84 ~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 163 (255)
T PRK11231 84 HHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLD 163 (255)
T ss_pred cCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11000 0011111100 0 00112233457788898998 57889999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
|||++||+.....+.+.+ ...+ ++|++||+.. +.+++++
T Consensus 164 EP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~ 207 (255)
T PRK11231 164 EPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207 (255)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCE
Confidence 999999999866655544 3334 9999999955 4455543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-23 Score=187.22 Aligned_cols=181 Identities=16% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.+. .+.+|.|.++|.++...+.+ . .......++..|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 95 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG------IKIEGNVIYEGKNIYSNNFD-I-LELRRKIGMVFQ 95 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcC------CCCceEEEECCEeccccccc-H-HHHhhceEEEee
Confidence 578889999999999999999999999999999875110 01479999999775321100 0 000111122112
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .......+.+.+.++.+++ ..++++..|||||+||+.+| +++|
T Consensus 96 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLD 175 (254)
T PRK14273 96 TPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMD 175 (254)
T ss_pred ccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11111 111111111110 1111223456677777775 35778999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHH---hcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHE---YKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~---l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++. +....++|++||+... .+++| .+++++...+.
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d----------~i~~l~~G~i~ 228 (254)
T PRK14273 176 EPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISD----------RTAFFLNGCIE 228 (254)
T ss_pred CCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999986555444 4333489999999654 34443 35666655444
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=187.00 Aligned_cols=168 Identities=17% Similarity=0.123 Sum_probs=108.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+..+ .|.+|.|.++|.++...+.. ......++.+|
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~i~~~~~~----~~~~~i~~v~q 89 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPE------ARVSGEVYLDGQDIFKMDVI----ELRRRVQMVFQ 89 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC------CCCceEEEECCEECCcCCHH----HHhccEEEEec
Confidence 578888889999999999999999999999999863000 02689999999865321100 00111222222
Q ss_pred HHhhhc---cCcEEEEEec--C--CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSK---SSDIVLMVLD--A--SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~--~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
....+. ..+++.+... . .......+.+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 90 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 169 (250)
T PRK14247 90 IPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169 (250)
T ss_pred cCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 111111 1111111110 0 0112223456788888887 25788999999999999988 89
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....+.+.+. ...++|++||+... .+++|
T Consensus 170 LDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14247 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISD 213 (250)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999999998665555443 33489999999653 34443
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-24 Score=186.32 Aligned_cols=168 Identities=18% Similarity=0.126 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC--Ce--eEEEecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DT--KIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~--g~--~i~~~d~~g~~~~~~~~~~ 128 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++ |. ++...+...+........+
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~ 93 (224)
T TIGR02324 25 KNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLP-----------DSGRILVRHEGAWVDLAQASPREVLEVRRKTIG 93 (224)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEEEecCCCccchhhcCHHHHHHHHhcceE
Confidence 578889999999999999999999999999999887 78999987 32 2211100000000000111
Q ss_pred hHHHHHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc-c--ccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL-R--LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l-~--~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+..|....+.. .+++.+.. .........+.+.++++.+++ . .++++.+||+||+||++++ +++
T Consensus 94 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 173 (224)
T TIGR02324 94 YVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLL 173 (224)
T ss_pred EEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111111110 01111000 011111223466788899998 2 4678999999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh-hHHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD-DLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~-~~~~~ 231 (317)
||||++||+.....+++.+. ..+ ++|++||+.+.. +++|+
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~ 218 (224)
T TIGR02324 174 DEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADR 218 (224)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcce
Confidence 99999999998666555543 334 899999996543 45554
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >COG0486 ThdF Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-22 Score=183.90 Aligned_cols=158 Identities=28% Similarity=0.315 Sum_probs=122.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhh
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVS 137 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~ 137 (317)
.|.+++|+|+||+|||||||+|++.... |+++||||||..+..+.++|.++.++||+|+++.... +.. .......+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~-VE~iGIeRs~~~i 294 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDV-VERIGIERAKKAI 294 (454)
T ss_pred cCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccH-HHHHHHHHHHHHH
Confidence 4789999999999999999999999976 9999999999999999999999999999999853221 111 23445677
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|++.+....+. .
T Consensus 295 ~~ADlvL~v~D~~~~~~~~d~------------------------------------------~---------------- 316 (454)
T COG0486 295 EEADLVLFVLDASQPLDKEDL------------------------------------------A---------------- 316 (454)
T ss_pred HhCCEEEEEEeCCCCCchhhH------------------------------------------H----------------
Confidence 899999999998764211110 0
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH--hcCCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
+.+ ..+..+|+++|+||.|+......... ......+.+|++++.|++.|.+.|...+...
T Consensus 317 ----------~~~---~~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 317 ----------LIE---LLPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred ----------HHH---hcccCCCEEEEEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence 000 01235899999999999976554433 3334589999999999999999999887653
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.9e-24 Score=191.14 Aligned_cols=176 Identities=21% Similarity=0.201 Sum_probs=116.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. +.... .......++.+|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-----------~~G~i~i~g~~~~~-~~~~~-~~~~~~ig~v~q 89 (283)
T PRK13636 23 KGININIKKGEVTAILGGNGAGKSTLFQNLNGILKP-----------SSGRILFDGKPIDY-SRKGL-MKLRESVGMVFQ 89 (283)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CccEEEECCEECCC-CcchH-HHHHhhEEEEec
Confidence 578889999999999999999999999999999988 89999999987631 10000 000011111111
Q ss_pred HH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
.. .. ....+++.+... ........+.+.++++.+++ ..++++..||+||+||++|| +++||||
T Consensus 90 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt 169 (283)
T PRK13636 90 DPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPT 169 (283)
T ss_pred CcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 11 00 011111111110 11122233567888999999 67889999999999999998 9999999
Q ss_pred CCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+ +..+.. ..+++++||+.+. .++|| .++++++.-+.
T Consensus 170 ~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~d----------ri~~l~~G~i~ 221 (283)
T PRK13636 170 AGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCD----------NVFVMKEGRVI 221 (283)
T ss_pred cCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999986654 444443 3499999999654 34444 45666655443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-23 Score=187.41 Aligned_cols=163 Identities=18% Similarity=0.173 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ ....++..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q 83 (258)
T PRK13548 19 DDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-----------DSGEVRLNGRPLADWSPAEL----ARRRAVLPQ 83 (258)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcccCCHHHh----hhheEEEcc
Confidence 578888889999999999999999999999999887 89999999976532111000 001111111
Q ss_pred HHhh---hccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------------ee
Q 021103 133 VIAV---SKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FN 190 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------------li 190 (317)
.... ....+++.+.... .........+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 84 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lll 163 (258)
T PRK13548 84 HSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL 163 (258)
T ss_pred CCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 1100 0111111111100 1112223457788999999 57889999999999999765 67
Q ss_pred ecCCCCCCCHHHHHHHH---HHhc-cc-CcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQIL---HEYK-IH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l---~~l~-~~-~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....++ ..+. .. .++|++||+... ..++|
T Consensus 164 LDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 209 (258)
T PRK13548 164 LDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYAD 209 (258)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcC
Confidence 89999999999865554 4443 33 499999999553 34444
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-24 Score=185.40 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=103.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|++++|+|+||||||||+++|+|...| ..|.|.++|.++...+... .....++..
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 84 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKP-----------TSGSVLLDGTDIRQLDPAD----LRRNIGYVP 84 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCeEEECCEEhHHCCHHH----HHhhEEEeC
Confidence 3578899999999999999999999999999999887 8899999987653211000 000111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccc-----------cCCcccccceeeeeeE--------
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK-----------RPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~-----------~~~~LS~g~~qr~~ia-------- 188 (317)
|....+ ...+.+.+.... .....+.+.++.+++ .+++ .+..||+||+||+.+|
T Consensus 85 q~~~~~~~tv~e~l~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 85 QDVTLFYGTLRDNITLGAPL----ADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred CCCccccchHHHHhhcCCCC----CCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 110000 011111111110 112345566777776 3333 3469999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLI 229 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~ 229 (317)
+++||||++||+.....+.+.+. ...++|++||+.+..+.+
T Consensus 161 llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 161 ILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLV 205 (220)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhC
Confidence 89999999999998766555554 335899999997654443
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-23 Score=190.26 Aligned_cols=163 Identities=19% Similarity=0.135 Sum_probs=110.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee---EEEEECCeeEEEecCCCccccccCCch
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP---GIIHYNDTKIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~---G~i~~~g~~i~~~d~~g~~~~~~~~~~ 128 (317)
-.++++++.+|+++||+|+||||||||+++|+|...| .+ |.|.++|.++...+.. . .....+
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p-----------~~g~~G~i~i~g~~~~~~~~~---~-~~~~ig 87 (282)
T PRK13640 23 LNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP-----------DDNPNSKITVDGITLTAKTVW---D-IREKVG 87 (282)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-----------CCCCCcEEEECCEECCcCCHH---H-HHhheE
Confidence 3678899999999999999999999999999999877 55 8999999875321100 0 011112
Q ss_pred hHHHHHh----hhccCcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 129 RGRQVIA----VSKSSDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 129 ~~~~~~~----~~~~~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+.+|... .....+++.+.... .......+.+.++++.+++ ..++++..||+||+||++|| +++
T Consensus 88 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llll 167 (282)
T PRK13640 88 IVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIIL 167 (282)
T ss_pred EEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 2111110 01112222221111 1122223457788999999 67889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---ccc-C-cEEEecCCCChhhHH
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIH-N-AEVLFREDATVDDLI 229 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~~~~ 229 (317)
||||++||+.....+.+.+ ... + ++|++||+......+
T Consensus 168 DEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 168 DESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMA 210 (282)
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 9999999999866555544 332 4 999999997654433
|
|
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.6e-22 Score=185.85 Aligned_cols=155 Identities=25% Similarity=0.318 Sum_probs=122.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~~~~~~~~~~~ 139 (317)
..|||||+||+|||||||.|+|.... |+++||+|||+..|.+.|.|..+.++||+|+....... ..+..|....+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 47999999999999999999999865 99999999999999999999999999999997544222 2345567778889
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|+++|++|+...... .+.+.++|
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~L------------------------------------------------------- 108 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKIL------------------------------------------------------- 108 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999998753221 11222211
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-HHh--cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-KLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. +..+|+++|+||+|....+... +++ .+..+++|||..|.|+++|++.+.+.++
T Consensus 109 --------------r--~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~ 165 (444)
T COG1160 109 --------------R--RSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP 165 (444)
T ss_pred --------------H--hcCCCEEEEEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence 1 1248999999999988544332 333 3567999999999999999999999984
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=205.02 Aligned_cols=164 Identities=12% Similarity=0.135 Sum_probs=109.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++|.++.... + ........++.+|
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~~~~~~-~--~~~~~~~i~~v~q 345 (510)
T PRK09700 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKR-----------AGGEIRLNGKDISPRS-P--LDAVKKGMAYITE 345 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCEECCCCC-H--HHHHHCCcEEccC
Confidence 578899999999999999999999999999999988 8999999987652110 0 0000111222222
Q ss_pred HH---hhh---ccCcEEEEEec----------C-CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE----
Q 021103 133 VI---AVS---KSSDIVLMVLD----------A-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 133 ~~---~~~---~~~d~i~~v~~----------~-~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---- 188 (317)
.. ..+ ...+.+.+... . .........+.++|+.+++ ..++++.+|||||+||+.||
T Consensus 346 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~ 425 (510)
T PRK09700 346 SRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLC 425 (510)
T ss_pred ccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHh
Confidence 10 011 11122211100 0 0111223456788999998 36888999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+ ...+ ++|++|||.. +..+||
T Consensus 426 ~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d 477 (510)
T PRK09700 426 CCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD 477 (510)
T ss_pred cCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 9999999999999866555554 3334 9999999954 444444
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-24 Score=190.19 Aligned_cols=163 Identities=17% Similarity=0.133 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+...+ ....++.+|
T Consensus 24 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 88 (265)
T PRK10253 24 ENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTP-----------AHGHVWLDGEHIQHYASKEV----ARRIGLLAQ 88 (265)
T ss_pred eecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEEhhhCCHHHH----hhheEEeec
Confidence 578888889999999999999999999999999887 88999999986532211000 001111111
Q ss_pred HHhhhc---cCcEEEEE----ec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK---SSDIVLMV----LD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v----~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+. .. ..........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 89 ~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 168 (265)
T PRK10253 89 NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLD 168 (265)
T ss_pred cCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 111000 01111100 00 00111233457788999998 57889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+++.+ .. .+ ++|++||+.. +.+++|
T Consensus 169 EPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 169 EPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999999866655544 33 24 8999999965 455554
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.6e-24 Score=207.00 Aligned_cols=165 Identities=21% Similarity=0.223 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++.+|
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 87 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEP-----------TKGTITINNINYNKLDHK---LAAQLGIGIIYQ 87 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCC-----------CccEEEECCEECCCCCHH---HHHHCCeEEEee
Confidence 578899999999999999999999999999999987 899999999765321100 000011222222
Q ss_pred HHhhhc---cCcEEEEEec------CC---CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSK---SSDIVLMVLD------AS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~------~~---~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+. ..+++.+... .. ........+.++|+.+++ ..++++.+|||||+||+.|| +
T Consensus 88 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~ll 167 (510)
T PRK09700 88 ELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVI 167 (510)
T ss_pred cccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 211111 1122211110 00 011223567788999999 57888999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
++||||++||+.....+++. +...+ ++|++|||.. +..++|+
T Consensus 168 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 168 IMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999986665544 43334 8999999944 4455554
|
|
| >TIGR03156 GTP_HflX GTP-binding protein HflX | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=180.45 Aligned_cols=159 Identities=28% Similarity=0.405 Sum_probs=115.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCC-chhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||||+|+|....++++||||+++..+.+.+ +|.++.++||||+....... ..........+..
T Consensus 189 ~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~~~~ 268 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEEVRE 268 (351)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHHHHh
Confidence 578999999999999999999998866889999999999999999 67899999999985432221 1223334456778
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|++.+.... .+.. ...+++.+.
T Consensus 269 ADlil~VvD~s~~~~~~-~~~~-----------------------------------------~~~~L~~l~-------- 298 (351)
T TIGR03156 269 ADLLLHVVDASDPDREE-QIEA-----------------------------------------VEKVLEELG-------- 298 (351)
T ss_pred CCEEEEEEECCCCchHH-HHHH-----------------------------------------HHHHHHHhc--------
Confidence 99999999987653211 1110 111111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc-CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR-QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~-~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
...+|+++|+||+|+...+....... ...++++||+++.|+++|.+.|.+.
T Consensus 299 ----------------~~~~piIlV~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 299 ----------------AEDIPQLLVYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred ----------------cCCCCEEEEEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhh
Confidence 01479999999999986544443322 3458999999999999999998764
|
This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like). |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-23 Score=186.98 Aligned_cols=160 Identities=16% Similarity=0.094 Sum_probs=102.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+.... .....++.
T Consensus 17 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~---~~~~i~~v 82 (243)
T TIGR01978 17 KGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-----------TSGTILFKGQDLLELEPDER---ARAGLFLA 82 (243)
T ss_pred eccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CcceEEECCEecCCCCHHHh---hccceEee
Confidence 5778888899999999999999999999999995 45 78999999976532110000 00001111
Q ss_pred HHHHhhhcc---CcEEEEEec---------CCCchhhHHHHHHHHHHcccc---ccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVLD---------ASKSEGHRQILTKELEAVGLR---LNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~---------~~~~~~~~~~~~~~L~~~~l~---~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.|....+.. .+++.+... ........+.+.+.++.+++. .++++. .||+||+||+.+|
T Consensus 83 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~ 162 (243)
T TIGR01978 83 FQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLE 162 (243)
T ss_pred eccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcC
Confidence 111111100 000000000 001111234577888999882 456666 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+ ... .++|++||+....
T Consensus 163 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~ 207 (243)
T TIGR01978 163 PKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLL 207 (243)
T ss_pred CCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHH
Confidence 9999999999999866555544 333 4899999996543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-23 Score=203.66 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|..+| .+|.|.++|.++... .+. .......++.+|
T Consensus 270 ~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-----------~~G~i~~~g~~~~~~-~~~--~~~~~~i~~~~q 335 (501)
T PRK11288 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRR-----------TAGQVYLDGKPIDIR-SPR--DAIRAGIMLCPE 335 (501)
T ss_pred cceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcC-----------CCceEEECCEECCCC-CHH--HHHhCCCEEcCc
Confidence 678899999999999999999999999999999987 899999998765311 000 000111111122
Q ss_pred HHh---hh---ccCcEEEEEecC--------CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VIA---VS---KSSDIVLMVLDA--------SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~---~~---~~~d~i~~v~~~--------~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
... .+ ...+.+.+.... .......+.+.++|+.+++ ..++++..|||||+||+.+|
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 110 01 111222111100 0111223457789999998 36888999999999999988
Q ss_pred --eeecCCCCCCCHHHHHHHHHH---hccc-CcEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE---YKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~---l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+++. +... .++|++|||.+ +.++|++
T Consensus 416 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 465 (501)
T PRK11288 416 KVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADR 465 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCE
Confidence 999999999999987666554 4443 49999999954 4444443
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=189.11 Aligned_cols=175 Identities=17% Similarity=0.131 Sum_probs=116.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+ .. ......++..
T Consensus 23 l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~i~~~~---~~-~~~~~i~~v~ 87 (277)
T PRK13642 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEE-----------FEGKVKIDGELLTAEN---VW-NLRRKIGMVF 87 (277)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEECCcCC---HH-HHhcceEEEE
Confidence 3678888899999999999999999999999999988 8999999997653211 00 0111122222
Q ss_pred HHHh-hh---ccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIA-VS---KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~-~~---~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
|... .+ ...+.+.+... ........+.+..+++.+++ ..++++..||+||+||+.|| +++|||
T Consensus 88 q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEP 167 (277)
T PRK13642 88 QNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDES 167 (277)
T ss_pred ECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 2110 01 11122211111 11111223456788888888 67888999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ .. ..++|++||+......+| .+++++..-+.
T Consensus 168 t~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d----------~i~~l~~G~i~ 219 (277)
T PRK13642 168 TSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSD----------RILVMKAGEII 219 (277)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCC----------EEEEEECCEEE
Confidence 9999999866665554 33 238999999966544333 45666655443
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-23 Score=181.69 Aligned_cols=153 Identities=18% Similarity=0.140 Sum_probs=104.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++.. +.+. ...++..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~---~~~~----~~~~~~~~ 80 (207)
T PRK13539 19 SGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPP-----------AAGTIKLDGGDIDD---PDVA----EACHYLGH 80 (207)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEeCcc---hhhH----hhcEEecC
Confidence 578889999999999999999999999999999887 88999999876421 1100 00011100
Q ss_pred HHhh---hccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.... ....+.+.+...... .....+.++++.+++ ..++++..||+||+||+.+| +++||||++|
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 158 (207)
T PRK13539 81 RNAMKPALTVAENLEFWAAFLG--GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158 (207)
T ss_pred CCcCCCCCcHHHHHHHHHHhcC--CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 0000 000111111001111 112347788999998 56788899999999999988 9999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~ 225 (317)
|+.....+++.+. .. .++|++||+.+.
T Consensus 159 D~~~~~~l~~~l~~~~~~~~tiii~sH~~~~ 189 (207)
T PRK13539 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLG 189 (207)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 9998666555543 23 489999999653
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=180.58 Aligned_cols=156 Identities=13% Similarity=0.055 Sum_probs=105.0
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC--CCccccccCCchhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL--PGIIEGASEGKGRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~--~g~~~~~~~~~~~~~ 131 (317)
++++++.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++...+. .++..+.. ..
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~-~~---- 81 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQP-----------SSGNIYYKNCNINNIAKPYCTYIGHNL-GL---- 81 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCcccChhhhhhEEeccCCc-CC----
Confidence 47888999999999999999999999999999888 89999999876532110 01111000 00
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.......+++.+..... .....+.++++.+++ ..++.+..||+||+||++++ +++||||++||+
T Consensus 82 --~~~~tv~~~l~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 82 --KLEMTVFENLKFWSEIY---NSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred --CccCCHHHHHHHHHHhc---ccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 00000001110000000 012356677888888 57888999999999999988 999999999999
Q ss_pred HHHHHHHHHhc---cc-CcEEEecCCCChhhHHH
Q 021103 201 KLCYQILHEYK---IH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~---~~-~~~i~~shd~~~~~~~~ 230 (317)
.....+.+.+. .. .+++++||+....+.++
T Consensus 157 ~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 190 (195)
T PRK13541 157 ENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQ 190 (195)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCccccchhh
Confidence 98666555443 23 48999999966444343
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=188.52 Aligned_cols=178 Identities=17% Similarity=0.125 Sum_probs=112.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-----EEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-----i~~~d~~g~~~~~~~~~ 127 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +.-.+............
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i 91 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAP-----------DAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCccccccccccCCHHHHHHHhhcce
Confidence 578888899999999999999999999999999988 88999999876 32111000000000011
Q ss_pred hhHHHHHh--hh---ccCcEEEEE---ecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIA--VS---KSSDIVLMV---LDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~--~~---~~~d~i~~v---~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++.+|... .. ...+.+.+. ............+.++++.+++ ..++.+..||+||+||+.+|
T Consensus 92 ~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~ 171 (258)
T PRK11701 92 GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPR 171 (258)
T ss_pred EEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 11111100 00 000000000 0000111223456778889988 35788999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCC
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ .. ..++|++||+.... +.+| .+++++..-+.
T Consensus 172 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d----------~i~~l~~g~i~ 231 (258)
T PRK11701 172 LVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAH----------RLLVMKQGRVV 231 (258)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcC----------EEEEEECCEEE
Confidence 9999999999999866555544 33 34999999996544 3444 35566655443
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=190.14 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=107.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++.. .....-........++..
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~ 96 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS-----------ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVF 96 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEccccccccccHHHHhccEEEEE
Confidence 578889999999999999999999999999999988 88999999876531 000000000001111111
Q ss_pred HHH--hh--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVI--AV--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~--~~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
|.. .. ....+++.+... ..........+.++++.+++ ..++++..||+||+||+++| +++||
T Consensus 97 q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 176 (289)
T PRK13645 97 QFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDE 176 (289)
T ss_pred eCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 110 00 001111111100 11111223456678888888 36788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH---hcc--cCcEEEecCCCC-hhhHHH
Q 021103 194 PLTHVDEKLCYQILHE---YKI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~---l~~--~~~~i~~shd~~-~~~~~~ 230 (317)
||++||+.....+++. +.. ..++|++||+.+ +.+++|
T Consensus 177 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d 219 (289)
T PRK13645 177 PTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIAD 219 (289)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999986665444 432 238999999955 344444
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=186.57 Aligned_cols=171 Identities=18% Similarity=0.116 Sum_probs=107.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...|.. ..+.+|.|.++|.++...+... .......++..
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~~~ 91 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNE------EARVEGEVRLFGRNIYSPDVDP--IEVRREVGMVF 91 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccCh--HHHhhceeEEe
Confidence 367889999999999999999999999999999986510 0024899999998763111000 00011111111
Q ss_pred HHHhhhcc---CcEEEEEecCC----CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKS---SDIVLMVLDAS----KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
|....+.. .+++.+..... ........+.++++.+++ ..++++..||+||+||+++| +
T Consensus 92 q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 171 (253)
T PRK14267 92 QYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKIL 171 (253)
T ss_pred cCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 21111111 11111110000 111222356677888876 25778999999999999988 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.....+.+.+. ...++|++||+... ..++|
T Consensus 172 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 216 (253)
T PRK14267 172 LMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSD 216 (253)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCC
Confidence 9999999999998665555443 33599999999653 44443
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.1e-24 Score=184.93 Aligned_cols=159 Identities=18% Similarity=0.138 Sum_probs=106.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec--CCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD--LPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d--~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||+|||||+++|+|...| .+|.|.++|.++...+ ..++..+...
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~~~~~~~~~~~~~q~~~----- 80 (223)
T TIGR03740 17 NNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRP-----------TSGEIIFDGHPWTRKDLHKIGSLIESPP----- 80 (223)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeccccccccEEEEcCCCC-----
Confidence 577888889999999999999999999999999888 8999999987642110 0111111000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
........+.+.+...... .....+.++++.+++ ..++.+..||+||+||+.++ +++||||++||
T Consensus 81 --~~~~~t~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD 156 (223)
T TIGR03740 81 --LYENLTARENLKVHTTLLG--LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLD 156 (223)
T ss_pred --ccccCCHHHHHHHHHHHcC--CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCC
Confidence 0000000111110000001 112456788899998 57888999999999999988 99999999999
Q ss_pred HHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHH
Q 021103 200 EKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDV 231 (317)
Q Consensus 200 ~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~ 231 (317)
+.....+.+.+ ...+ ++|++||+.+. .+.+++
T Consensus 157 ~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~ 193 (223)
T TIGR03740 157 PIGIQELRELIRSFPEQGITVILSSHILSEVQQLADH 193 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCE
Confidence 99865554444 3334 89999999654 344543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-23 Score=202.75 Aligned_cols=165 Identities=16% Similarity=0.161 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 80 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQK-----------DSGSILFQGKEIDFKSS---KEALENGISMVHQ 80 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCEECCCCCH---HHHHhCCEEEEec
Confidence 578889999999999999999999999999999888 89999999986532110 0000111222222
Q ss_pred HHhhh---ccCcEEEEEec---C--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS---KSSDIVLMVLD---A--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~---~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+... . .......+.+.++++.+++ ..++++.+|||||+||+.+| +++||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDE 160 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDE 160 (491)
T ss_pred ccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 11111 11222222111 0 0111223467788999998 56888999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHH---HhcccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILH---EYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~---~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+.+ .+...+ ++|++|||.+ +..+||+
T Consensus 161 Pt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 161 PTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 999999998666644 443334 8999999954 4455554
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=187.70 Aligned_cols=170 Identities=16% Similarity=0.128 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+ +.+|.|.++|.++...+. +.-........++.+
T Consensus 21 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~--------~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~ 92 (262)
T PRK09984 21 HAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDK--------SAGSHIELLGRTVQREGRLARDIRKSRANTGYIF 92 (262)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCC--------CCceEEEECCEecccccccchhHHHHHhheEEEc
Confidence 57788888999999999999999999999999987610 135999999987642110 000000000111111
Q ss_pred HHHhhhcc---CcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSKS---SDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+.. .+.+.+... ..........+.++++.+++ ..++.+..||+||+||+.++
T Consensus 93 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 172 (262)
T PRK09984 93 QQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAK 172 (262)
T ss_pred cccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCC
Confidence 11111110 111110000 00012234467889999999 57889999999999999988
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+.+.+ .. ..++|++||+.. +.++++
T Consensus 173 llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d 221 (262)
T PRK09984 173 VILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCE 221 (262)
T ss_pred EEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 9999999999999865554444 32 248999999976 455554
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-23 Score=209.35 Aligned_cols=177 Identities=18% Similarity=0.136 Sum_probs=117.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+..|+++||+|+||||||||+++|+|+..| .+|.|.++|.++...+.... ......+++++|
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-----------~~G~I~~~g~~i~~~~~~~~-~~~~~~i~~v~Q 408 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVES-----------QGGEIIFNGQRIDTLSPGKL-QALRRDIQFIFQ 408 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCcEEEECCEECCcCCHHHH-HHhcCCeEEEec
Confidence 578899999999999999999999999999999988 88999999986532210000 000111222222
Q ss_pred HH--hhhcc---CcEEEEEec--CC-CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VI--AVSKS---SDIVLMVLD--AS-KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~--~~~~~---~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.. ..+.. .+.+.+... .. ......+.+.++|+.+++ ..++++.+|||||+||++|| |++|
T Consensus 409 ~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllD 488 (623)
T PRK10261 409 DPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIAD 488 (623)
T ss_pred CchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 21 01111 111111010 00 112233567889999999 36889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. ..++|++|||... ..++| .++++...-++
T Consensus 489 EPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~d----------ri~vl~~G~iv 543 (623)
T PRK10261 489 EAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISH----------RVAVMYLGQIV 543 (623)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866665555 32 2389999999553 34443 45666655443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-23 Score=197.43 Aligned_cols=167 Identities=17% Similarity=0.208 Sum_probs=126.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+++||+|.||||||||+|+|+|.++| ++|+|.++|.++.+.++ .+....++..++
T Consensus 24 L~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-----------~~G~I~~~G~~~~~~sp---~~A~~~GI~~V~ 89 (500)
T COG1129 24 LDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPP-----------DSGEILIDGKPVAFSSP---RDALAAGIATVH 89 (500)
T ss_pred eccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccC-----------CCceEEECCEEccCCCH---HHHHhCCcEEEe
Confidence 3678888999999999999999999999999999998 99999999998876432 122334555566
Q ss_pred HHHhhhccC---cEEEEEecCC------CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSKSS---DIVLMVLDAS------KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~~~---d~i~~v~~~~------~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|.+..+++. +++.+..... +.......+.++|..+++ ..+.++.+||+||+|.+.|| ++|
T Consensus 90 QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIl 169 (500)
T COG1129 90 QELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLIL 169 (500)
T ss_pred echhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666665553 4443322211 123345667888998887 58889999999999999998 999
Q ss_pred cCCCCCCCHHHHHH---HHHHhcccC-cEEEecCC-CChhhHHHHH
Q 021103 192 TLPLTHVDEKLCYQ---ILHEYKIHN-AEVLFRED-ATVDDLIDVI 232 (317)
Q Consensus 192 DEPt~~LD~~~~~~---~l~~l~~~~-~~i~~shd-~~~~~~~~~~ 232 (317)
||||+.|+...... +++.++..+ ++|++||. .++-++||++
T Consensus 170 DEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 170 DEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEE
Confidence 99999999887554 555566666 99999998 5666777664
|
|
| >PRK12298 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-21 Score=183.76 Aligned_cols=172 Identities=24% Similarity=0.364 Sum_probs=123.9
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--.-|||||+||||||||||+|++..+.+++|||||+.|..|.+.+.+ ..+.++||||+......+.+...++
T Consensus 152 ~~lelk~iadValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~ 231 (390)
T PRK12298 152 LKLELKLLADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRF 231 (390)
T ss_pred EEEeeeccccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHH
Confidence 334444456799999999999999999999887899999999999999999875 5699999999987665555555667
Q ss_pred HhhhccCcEEEEEecCCCc--hhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 134 IAVSKSSDIVLMVLDASKS--EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
+..+..++++++++|.... ....+... .+++++.
T Consensus 232 l~~i~radvlL~VVD~s~~~~~d~~e~~~--------------------------------------------~l~~eL~ 267 (390)
T PRK12298 232 LKHLERCRVLLHLIDIAPIDGSDPVENAR--------------------------------------------IIINELE 267 (390)
T ss_pred HHHHHhCCEEEEEeccCcccccChHHHHH--------------------------------------------HHHHHHH
Confidence 7778899999999987521 00101111 1111111
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc---C-CCeEEEeccccccHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR---Q-PNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~---~-~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ... ....+|.++|+||+|+...+++. .+.+ + ..++++||+++.++++|++.|
T Consensus 268 ~---------------~~~----~L~~kP~IlVlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I 328 (390)
T PRK12298 268 K---------------YSP----KLAEKPRWLVFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDL 328 (390)
T ss_pred h---------------hhh----hhcCCCEEEEEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHH
Confidence 0 000 00147999999999998654332 2222 2 258999999999999999999
Q ss_pred HHHhCe
Q 021103 284 WEEMGL 289 (317)
Q Consensus 284 ~~~l~~ 289 (317)
.+.+..
T Consensus 329 ~~~L~~ 334 (390)
T PRK12298 329 MTFIEE 334 (390)
T ss_pred HHHhhh
Confidence 998864
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-23 Score=184.72 Aligned_cols=146 Identities=13% Similarity=0.157 Sum_probs=101.2
Q ss_pred CCcEEEEe-----CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCC
Q 021103 53 EGFEVTKF-----GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEG 126 (317)
Q Consensus 53 ~~~~~~~~-----~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~ 126 (317)
.+|++.+. .|++++|+|+||||||||+++|+|...| .+|.|.++|..+.++... ....
T Consensus 11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-----------~~G~i~~~g~~i~~~~q~~~~~~----- 74 (246)
T cd03237 11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKP-----------DEGDIEIELDTVSYKPQYIKADY----- 74 (246)
T ss_pred CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCCeEEECCceEEEecccccCCC-----
Confidence 35666665 5899999999999999999999999988 889999988766544211 1000
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
...+.+.+... ...... ......++++.+++ ..++++..|||||+||++|| +++||||
T Consensus 75 ~~tv~e~l~~~---------~~~~~~--~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt 143 (246)
T cd03237 75 EGTVRDLLSSI---------TKDFYT--HPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPS 143 (246)
T ss_pred CCCHHHHHHHH---------hhhccc--cHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 00011111110 000000 11235567888888 57888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhcc--cCcEEEecCCCCh
Q 021103 196 THVDEKLCYQILH---EYKI--HNAEVLFREDATV 225 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~~ 225 (317)
++||+.....+.+ .+.. ..++|++|||...
T Consensus 144 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~ 178 (246)
T cd03237 144 AYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIM 178 (246)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999998665544 4432 3499999999553
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-22 Score=203.85 Aligned_cols=146 Identities=14% Similarity=0.209 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCcccccc-CCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGAS-EGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~-~~~~~~ 130 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++. +.. ......
T Consensus 526 ~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-----------~~G~I~~~~~~~igyv~------Q~~~~~l~~~ 588 (718)
T PLN03073 526 KNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQP-----------SSGTVFRSAKVRMAVFS------QHHVDGLDLS 588 (718)
T ss_pred eccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCceEEECCceeEEEEe------ccccccCCcc
Confidence 467899999999999999999999999999999988 7899988653 233322 110 000000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
......+ .... +....+.+..+|+.+++ ..++++..|||||+||++|| +++||||++|
T Consensus 589 ~~~~~~~---------~~~~-~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~L 658 (718)
T PLN03073 589 SNPLLYM---------MRCF-PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658 (718)
T ss_pred hhHHHHH---------HHhc-CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 0000000 0000 01123467889999998 35788999999999999988 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
|+.....+++.+.. .+++|++|||..+
T Consensus 659 D~~s~~~l~~~L~~~~gtvIivSHd~~~ 686 (718)
T PLN03073 659 DLDAVEALIQGLVLFQGGVLMVSHDEHL 686 (718)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 99998888887764 4699999999553
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-23 Score=204.12 Aligned_cols=167 Identities=17% Similarity=0.174 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|..+| +|.+|.|.++|.++...+. ....+...++.+|
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---------~~~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 89 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPH---------GTYEGEIIFEGEELQASNI---RDTERAGIAIIHQ 89 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCH---HHHHHCCeEEEEe
Confidence 678899999999999999999999999999999864 1268999999987532110 0000111222222
Q ss_pred HHhhh---ccCcEEEEEecC-----CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS---KSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~-----~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++.+|||||+||+.+| +++||
T Consensus 90 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDE 169 (506)
T PRK13549 90 ELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDE 169 (506)
T ss_pred ccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 21111 112222222111 1111223467888999999 57889999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+++.+ ...+ ++|++|||.. +.+++|+
T Consensus 170 Pt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 170 PTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCE
Confidence 99999999866555544 3334 8999999954 4455554
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.7e-23 Score=184.05 Aligned_cols=164 Identities=15% Similarity=0.024 Sum_probs=105.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+. | ..|.+|.|.++|.++...+.+. .......++.+|
T Consensus 30 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~p~~G~i~~~g~~~~~~~~~~--~~~~~~i~~~~q 101 (260)
T PRK10744 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELY---P---EQRAEGEILLDGENILTPKQDI--ALLRAKVGMVFQ 101 (260)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccC---C---CCCcceEEEECCEEccccccch--HHHhcceEEEec
Confidence 5788899999999999999999999999999997520 0 0126899999998753111000 000111222122
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .......+.+.++++.+++ ..++++.+||+||+||+++| +++|
T Consensus 102 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 181 (260)
T PRK10744 102 KPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLD 181 (260)
T ss_pred CCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEc
Confidence 11111 111222111111 1111223456778888876 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT 224 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~ 224 (317)
|||++||+.....+++.+ ....++|++||+..
T Consensus 182 EPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~ 216 (260)
T PRK10744 182 EPCSALDPISTGRIEELITELKQDYTVVIVTHNMQ 216 (260)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 999999999865554444 33348999999954
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=170.94 Aligned_cols=157 Identities=24% Similarity=0.240 Sum_probs=114.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++|+.+.+|+.++++||+|||||||+|.++|...| ..|.|.++|.+|. -||- ..+.++
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P-----------~~G~i~l~~r~i~---gPga------ergvVF 80 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTP-----------SRGSIQLNGRRIE---GPGA------ERGVVF 80 (259)
T ss_pred hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCc-----------ccceEEECCEecc---CCCc------cceeEe
Confidence 3678899999999999999999999999999999988 8999999998764 2331 112223
Q ss_pred HHHhh---hccCcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.-.. +...|++.|.+... .+....+.+.+.|..+|+ ..++++-+|||||+||+++| +++|||+
T Consensus 81 Q~~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPf 160 (259)
T COG4525 81 QNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPF 160 (259)
T ss_pred ccCccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCch
Confidence 32222 22344454444332 233345567788999999 56888999999999999998 8999999
Q ss_pred CCCCHHHHH---HH-HHHhcccC-cEEEecCCCChhhH
Q 021103 196 THVDEKLCY---QI-LHEYKIHN-AEVLFREDATVDDL 228 (317)
Q Consensus 196 ~~LD~~~~~---~~-l~~l~~~~-~~i~~shd~~~~~~ 228 (317)
..||.-... ++ ++..+..+ .++++|||.+.+-+
T Consensus 161 gAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlf 198 (259)
T COG4525 161 GALDALTREQMQELLLDLWQETGKQVLLITHDIEEALF 198 (259)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHh
Confidence 999976533 33 34444444 89999999665443
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-23 Score=179.10 Aligned_cols=164 Identities=20% Similarity=0.180 Sum_probs=120.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCc-cccccCCchhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGI-IEGASEGKGRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~-~~~~~~~~~~~~ 131 (317)
+.++..++....||.|++|||||||+|+|+|+..| +.|.|.++|.-+ +|+ .|+ .+.....+++++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rP-----------deG~I~lngr~L--~Ds~k~i~lp~~~RriGYVF 82 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRP-----------DEGRIELNGRVL--VDAEKGIFLPPEKRRIGYVF 82 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCc-----------cccEEEECCEEe--ecccCCcccChhhheeeeEe
Confidence 34445555479999999999999999999999998 999999999764 343 233 233455667777
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
|....|++..+--....+... .......+....+|+ .++++|..||||||||++|+ ++||||++.||.
T Consensus 83 QDARLFpH~tVrgNL~YG~~~-~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 83 QDARLFPHYTVRGNLRYGMWK-SMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred eccccccceEEecchhhhhcc-cchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 776666665443332222111 123456677788899 89999999999999999998 899999999998
Q ss_pred HHHHHHHHHh---ccc-C-cEEEecCC-CChhhHHHH
Q 021103 201 KLCYQILHEY---KIH-N-AEVLFRED-ATVDDLIDV 231 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~-~~i~~shd-~~~~~~~~~ 231 (317)
....+++-.+ ..+ + .++++||. .++.++.|+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~ 198 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLDEVLRLADR 198 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhhe
Confidence 8766665544 322 3 89999999 667777765
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-23 Score=182.14 Aligned_cols=167 Identities=21% Similarity=0.162 Sum_probs=110.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++...+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++...+. ..........++.+
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~-~~~~~~~~~i~~~~ 88 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSV-----------QEGSLKVLGQELYGASE-KELVQLRRNIGYIF 88 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEhHhcCH-hHHHHHHhheEEEc
Confidence 3678889999999999999999999999999999887 89999999987632110 00000001111111
Q ss_pred HHHhhhc---cCcEEEEEecCC---CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSK---SSDIVLMVLDAS---KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+....+. ..+++.+..+.. ........+.++++.+++ ..++.+.+||+||+||+.++ +++|||
T Consensus 89 q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP 168 (220)
T TIGR02982 89 QAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEP 168 (220)
T ss_pred CChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1111111 111111111111 111223457788999999 57888999999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~ 230 (317)
|++||+.....+++.+ .. ..++|++||+....+++|
T Consensus 169 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d 209 (220)
T TIGR02982 169 TAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVAD 209 (220)
T ss_pred CCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 9999999865555544 32 349999999976544443
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-23 Score=204.05 Aligned_cols=165 Identities=14% Similarity=0.148 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. .......++..|
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~---~~~~~~i~~v~q 86 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQP-----------DAGSILIDGQEMRFASTT---AALAAGVAIIYQ 86 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHHhCCEEEEEe
Confidence 578899999999999999999999999999999888 899999998765321100 000111222222
Q ss_pred HHhhhc---cCcEEEEEe----cC-CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSK---SSDIVLMVL----DA-SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~----~~-~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+. ..+++.+.. .. .......+.+.++|+.+++ ..++++.+|||||+||+.+| +++||
T Consensus 87 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDE 166 (501)
T PRK11288 87 ELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDE 166 (501)
T ss_pred chhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcC
Confidence 211111 112222111 00 1112234567788999998 56788999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHHH
Q 021103 194 PLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||++||+.....+++.+. ..+ ++|++|||.+ +..+||+
T Consensus 167 Pt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~ 209 (501)
T PRK11288 167 PTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDA 209 (501)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 999999998666655443 334 8999999954 4455554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-23 Score=182.47 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. .|.+|.|.++|.++.-.+.. ......++.+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~--------~~~~G~i~~~g~~i~~~~~~----~~~~~i~~~~q 86 (246)
T PRK14269 19 FDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKI--------AKIDGLVEIEGKDVKNQDVV----ALRKNVGMVFQ 86 (246)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCC--------CCCceEEEECCEecccCCHH----HHhhhEEEEec
Confidence 5788999999999999999999999999999987420 12789999999876422110 00111222222
Q ss_pred HHhhh--ccCcEEEEEecCC----CchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVS--KSSDIVLMVLDAS----KSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~----~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+ ...+++.+..... ........+.++++.+++. .++.+..||+||+||+++| +++
T Consensus 87 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 166 (246)
T PRK14269 87 QPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLL 166 (246)
T ss_pred CCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11111 1112221111000 1112334567788888882 5678899999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+.+. ...++|++||+.. +.+.+| .+++++...+.
T Consensus 167 DEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~i~~l~~G~i~ 220 (246)
T PRK14269 167 DEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVAD----------YTAFFHLGELI 220 (246)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCc----------EEEEEECCEEE
Confidence 99999999998666555543 3349999999955 444443 45666665544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.6e-23 Score=184.45 Aligned_cols=181 Identities=16% Similarity=0.104 Sum_probs=112.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...+..+ .|.+|+|.++|.++...+.. . .......++.+|
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 100 (258)
T PRK14268 29 KNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKN------CRIEGKVSIEGEDIYEPDVD-V-VELRKNVGMVFQ 100 (258)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccC------CCcceEEEECCEEcccccch-H-HHHhhhEEEEec
Confidence 578899999999999999999999999999999753000 01589999999875321100 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEec--CCCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVS--KSSDIVLMVLD--ASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+ ...+++.+... ..........+.++++.+++ ..++++..||+||+||+.+| +++||
T Consensus 101 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 180 (258)
T PRK14268 101 KPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180 (258)
T ss_pred CCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11100 01111111110 01111122346678888876 25778899999999999998 89999
Q ss_pred CCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+.+.+ ....++|++||+... .++|| .++++++.-+.
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d----------~i~~l~~G~i~ 232 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISD----------YTGFFLMGELI 232 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCC----------EEEEEECCEEE
Confidence 99999999865554444 333489999999553 34443 46677665443
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.8e-23 Score=201.87 Aligned_cols=165 Identities=11% Similarity=0.167 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+++||+|+||||||||+++|+|... + .+|.|.++|.++.... + ........++..
T Consensus 279 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-----------~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~ 344 (506)
T PRK13549 279 DDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGR-----------WEGEIFIDGKPVKIRN-P--QQAIAQGIAMVP 344 (506)
T ss_pred cceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCC-----------CCcEEEECCEECCCCC-H--HHHHHCCCEEeC
Confidence 57889999999999999999999999999999986 5 7899999987653110 0 000011122222
Q ss_pred HHHh---h---hccCcEEEEEe-c-C-----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 132 QVIA---V---SKSSDIVLMVL-D-A-----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 132 ~~~~---~---~~~~d~i~~v~-~-~-----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
|... . +...+++.+.. . . .......+.+.++|+.+++ ..++++.+|||||+||+.||
T Consensus 345 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p 424 (506)
T PRK13549 345 EDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNP 424 (506)
T ss_pred cchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCC
Confidence 2210 1 11122222110 0 0 0112233567889999998 35788999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+ +..+...+ ++|++|||.+ +.++||+
T Consensus 425 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 425 KILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred CEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999986555 44444434 9999999954 4455543
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=3e-23 Score=184.74 Aligned_cols=150 Identities=14% Similarity=0.093 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++.. +.+... ..
T Consensus 21 ~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----l~-- 83 (251)
T PRK09544 21 SDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAP-----------DEGVIKRNGKLRIGYVPQKLYLDTT----LP-- 83 (251)
T ss_pred EeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCccCEEEeccccccccc----cC--
Confidence 577889999999999999999999999999999888 8899999763 2333221 111100 00
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
......+. + .. ....+.+.++++.+++ ..++++..||+||+||+.+| +++||||++||
T Consensus 84 ~~~~~~~~------~--~~---~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 152 (251)
T PRK09544 84 LTVNRFLR------L--RP---GTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152 (251)
T ss_pred hhHHHHHh------c--cc---cccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 00000000 0 00 0112356778889998 57888999999999999988 99999999999
Q ss_pred HHHHHHHHHHh---cc--cCcEEEecCCCCh-hhHHH
Q 021103 200 EKLCYQILHEY---KI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l---~~--~~~~i~~shd~~~-~~~~~ 230 (317)
+.....+.+.+ .. ..++|++||+.+. .+.++
T Consensus 153 ~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d 189 (251)
T PRK09544 153 VNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTD 189 (251)
T ss_pred HHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 99866655444 33 3489999999654 44444
|
|
| >COG0536 Obg Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=175.02 Aligned_cols=172 Identities=30% Similarity=0.409 Sum_probs=133.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+.++..--.-|+|||.||||||||+++++...+.+++|||||+.|.-|.+.+. +..+.+.|.||+++.++.+.+.+.+
T Consensus 151 ~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~ 230 (369)
T COG0536 151 DLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLR 230 (369)
T ss_pred EEEEEEeeecccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHH
Confidence 455555555679999999999999999999999999999999999999999974 4558899999999999999999999
Q ss_pred HHhhhccCcEEEEEecCCCc-----hhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKS-----EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~-----~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
++..+..+.++++++|.... ..+.+.+...|+.+.-
T Consensus 231 FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~--------------------------------------- 271 (369)
T COG0536 231 FLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSP--------------------------------------- 271 (369)
T ss_pred HHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhH---------------------------------------
Confidence 99999999999999997632 2233344444433211
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHHHH----hc---CCCeEEEeccccccHHHH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKL----AR---QPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~~l----~~---~~~~v~iSa~~~~~i~~l 279 (317)
.-..+|.++|+||+|+. +.+..+.+ .+ +...++||+.+++|++.|
T Consensus 272 ---------------------------~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L 324 (369)
T COG0536 272 ---------------------------KLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDEL 324 (369)
T ss_pred ---------------------------HhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHH
Confidence 01258999999999955 44554432 22 222333999999999999
Q ss_pred HHHHHHHhCeeE
Q 021103 280 LARMWEEMGLVR 291 (317)
Q Consensus 280 ~~~i~~~l~~~~ 291 (317)
+..+.+.+...+
T Consensus 325 ~~~~~~~l~~~~ 336 (369)
T COG0536 325 LRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.2e-23 Score=181.81 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=109.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||+|||||+++|+|...| ..|.|.++|.++...+. .....++..
T Consensus 16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~-----------~~G~i~~~g~~~~~~~~------~~~~i~~~~ 78 (232)
T cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP-----------TSGEILLDGKDITNLPP------HKRPVNTVF 78 (232)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcceEEEe
Confidence 3578888889999999999999999999999999988 88999999976532110 001111111
Q ss_pred HHHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
+....+. ..+++.+... ..........+..+++.+++ ..++.+..||+||+||+.++ +++||||
T Consensus 79 q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~ 158 (232)
T cd03300 79 QNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPL 158 (232)
T ss_pred cccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 1111110 0111111000 01122233456778888998 57888999999999999988 9999999
Q ss_pred CCCCHHHHHHHHH---Hhcc--cCcEEEecCCCC-hhhHHHH
Q 021103 196 THVDEKLCYQILH---EYKI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
++||+.....+.+ .+.. ..++|++||+.. +.+.+|+
T Consensus 159 ~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 159 GALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred ccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 9999998665544 4443 349999999964 4454443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-24 Score=185.73 Aligned_cols=157 Identities=20% Similarity=0.159 Sum_probs=102.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|+|.++|.++...+.. .......++.+|
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~~~q 82 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPV-----------KSGSIRLDGEDITKLPPH---ERARAGIAYVPQ 82 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEECCCCCHH---HHHHhCeEEecc
Confidence 578889999999999999999999999999999988 899999998765321100 000011111111
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHcc-c--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~-l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
....+.. .+.+.+....... ...+...+.++.++ + ..++++..||+||+||+.++ +++||||++
T Consensus 83 ~~~~~~~~tv~~~l~~~~~~~~~-~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~ 161 (230)
T TIGR03410 83 GREIFPRLTVEENLLTGLAALPR-RSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEG 161 (230)
T ss_pred CCcccCCCcHHHHHHHHHHhcCc-chHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccc
Confidence 1111110 1111110000101 11223455666665 3 56888999999999999988 999999999
Q ss_pred CCHHHHHHHHHHh---cc--cCcEEEecCCCC
Q 021103 198 VDEKLCYQILHEY---KI--HNAEVLFREDAT 224 (317)
Q Consensus 198 LD~~~~~~~l~~l---~~--~~~~i~~shd~~ 224 (317)
||+.....+.+.+ .. ..++|++||+.+
T Consensus 162 LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~ 193 (230)
T TIGR03410 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD 193 (230)
T ss_pred CCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH
Confidence 9999866555444 33 249999999954
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK12299 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-21 Score=177.13 Aligned_cols=171 Identities=26% Similarity=0.389 Sum_probs=125.9
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|||||.||||||||||+|++..+.+++|||||+.|..|.+.+ ++.++.++|+||+++......+...++
T Consensus 151 ~~lelk~~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~f 230 (335)
T PRK12299 151 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRF 230 (335)
T ss_pred EEEEEcccCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHH
Confidence 4445545678999999999999999999998877999999999999999998 567899999999987766666666777
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhccc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~ 213 (317)
+..++.++++++++|...... .+.+..+ ..++..
T Consensus 231 lrhie~a~vlI~ViD~s~~~s-~e~~~~~--------------------------------------------~~EL~~- 264 (335)
T PRK12299 231 LKHIERTRLLLHLVDIEAVDP-VEDYKTI--------------------------------------------RNELEK- 264 (335)
T ss_pred HHHhhhcCEEEEEEcCCCCCC-HHHHHHH--------------------------------------------HHHHHH-
Confidence 778888999999999864321 1111111 111110
Q ss_pred CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-----HH-hcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KL-ARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 214 ~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-----~l-~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......+|+++|+||+|+....... .. ... ..++++||+++.|+++|.+.|.+.
T Consensus 265 ------------------~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~ 326 (335)
T PRK12299 265 ------------------YSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWEL 326 (335)
T ss_pred ------------------hhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 00001247999999999997543211 11 122 468899999999999999999987
Q ss_pred hCe
Q 021103 287 MGL 289 (317)
Q Consensus 287 l~~ 289 (317)
+..
T Consensus 327 l~~ 329 (335)
T PRK12299 327 LEE 329 (335)
T ss_pred HHh
Confidence 753
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-23 Score=184.10 Aligned_cols=162 Identities=17% Similarity=0.117 Sum_probs=103.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-----EEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-----IQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-----i~~~d~~g~~~~~~~~~ 127 (317)
.++++++..|++++|+|+||||||||+++|+|...| .+|.|.++|.+ +...+............
T Consensus 20 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i 88 (253)
T TIGR02323 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP-----------DHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88 (253)
T ss_pred ecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEecccccccccccCCHHHHHHhhhcce
Confidence 577888889999999999999999999999999888 88999998765 32111000000000011
Q ss_pred hhHHHHHh--hh---ccCcEEEE---EecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 128 GRGRQVIA--VS---KSSDIVLM---VLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 128 ~~~~~~~~--~~---~~~d~i~~---v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
++..|... .. ...+.+.. .............+.++++.+++ ..++.+..||+||+||+++|
T Consensus 89 ~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~ 168 (253)
T TIGR02323 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPR 168 (253)
T ss_pred EEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCC
Confidence 11111100 00 00000000 00000011123456788899988 45778999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCCh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATV 225 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~ 225 (317)
+++||||++||+.....+++.+. . ..++|++||+...
T Consensus 169 vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~ 211 (253)
T TIGR02323 169 LVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGV 211 (253)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 99999999999998666555443 2 3499999999553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK12296 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=185.91 Aligned_cols=182 Identities=30% Similarity=0.412 Sum_probs=131.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
..+.++..--..|+|||.||||||||||+|++..+.+++|||||++|..|.+.+++.++.++|+||+++......+...+
T Consensus 150 ~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~ 229 (500)
T PRK12296 150 RDLVLELKSVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLD 229 (500)
T ss_pred EEEEEEecccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHH
Confidence 34556666678899999999999999999999987799999999999999999999999999999998766665566667
Q ss_pred HHhhhccCcEEEEEecCCCch------hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSE------GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~ 206 (317)
++..+..++++++++|..... .+.+.+...|..+.-.+.. |+
T Consensus 230 fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~---------------------~~----------- 277 (500)
T PRK12296 230 FLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDG---------------------DL----------- 277 (500)
T ss_pred HHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccc---------------------cc-----------
Confidence 777788899999999975321 1112222222211000000 00
Q ss_pred HHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-----HHhc-CCCeEEEeccccccHHHHH
Q 021103 207 LHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-----KLAR-QPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 207 l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-----~l~~-~~~~v~iSa~~~~~i~~l~ 280 (317)
.. .....+|+|+|+||+|+....+.. .+.. ...++++||.++.|+++|.
T Consensus 278 -----------------~~--------~~l~~kP~IVVlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~ 332 (500)
T PRK12296 278 -----------------GL--------GDLAERPRLVVLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELS 332 (500)
T ss_pred -----------------hh--------hhhcCCCEEEEEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 00 001247999999999997543321 1222 2468999999999999999
Q ss_pred HHHHHHhCeeE
Q 021103 281 ARMWEEMGLVR 291 (317)
Q Consensus 281 ~~i~~~l~~~~ 291 (317)
+.|.+.+...+
T Consensus 333 ~~L~ell~~~r 343 (500)
T PRK12296 333 FALAELVEEAR 343 (500)
T ss_pred HHHHHHHHhhh
Confidence 99998886654
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-23 Score=181.55 Aligned_cols=161 Identities=14% Similarity=0.081 Sum_probs=105.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 94 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQP-----------QGGQVLLDGKPISQYEHKY----LHSKVSLVG 94 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCcEEEECCCchHHcCHHH----HHhhEEEEe
Confidence 3678899999999999999999999999999999988 8899999987653211000 001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+....+ ...+++.+......... ....+.++++.+ ++ ..+.++.+||+||+||+.+| +++
T Consensus 95 q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llll 174 (226)
T cd03248 95 QEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLIL 174 (226)
T ss_pred cccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111111 11222222111111100 111245667777 66 56788999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
||||++||+.....+.+.+. ...++|++||+.+...
T Consensus 175 DEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 213 (226)
T cd03248 175 DEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE 213 (226)
T ss_pred eCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 99999999998666555443 3348999999965443
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-23 Score=185.64 Aligned_cols=170 Identities=18% Similarity=0.155 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. + .|++|.|.++|.++...+.. . .......++.++
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~---~---~~~~G~I~~~g~~~~~~~~~-~-~~~~~~i~~~~q 92 (258)
T PRK14241 21 EDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIP---G---ARVEGEVLLDGEDLYGPGVD-P-VAVRRTIGMVFQ 92 (258)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCccc---C---CCcceEEEECCEeccccccC-h-HHHhcceEEEcc
Confidence 57888999999999999999999999999999975300 0 02589999999765311100 0 000111111111
Q ss_pred HHhhhcc---CcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSKS---SDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+.. .+++.+..... ......+.+.++++.+++ ..++.+.+||+||+||+++| +++
T Consensus 93 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 172 (258)
T PRK14241 93 RPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLM 172 (258)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1111110 11111100000 111223456677888876 35678899999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+ +..+....++|++||+.. +.+++|
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 173 DEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 999999999885554 444433359999999955 344443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.6e-23 Score=184.91 Aligned_cols=177 Identities=14% Similarity=0.074 Sum_probs=110.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|++|.|.++|.++...+.. . .......++.+|
T Consensus 30 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~v~~~g~~i~~~~~~-~-~~~~~~i~~v~q 101 (269)
T PRK14259 30 KNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE------GCSLKGRVLFDGTDLYDPRVD-P-VEVRRRIGMVFQ 101 (269)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccC------CCCCceEEEECCEEcccccCC-H-HHHhhceEEEcc
Confidence 57889999999999999999999999999999875200 002789999999876321100 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVS--KSSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+ ...+++.+...... .....+.+.++++.+++ ..++++.+||+||+||+++| +++|||
T Consensus 102 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP 181 (269)
T PRK14259 102 QPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEP 181 (269)
T ss_pred CCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 11111 11122211111110 11123345667777765 35778899999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEec
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNK 247 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK 247 (317)
|++||+.....+.+.+ ....++|++||+.. +.+++ ..+++++.
T Consensus 182 t~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~----------d~i~~l~~ 228 (269)
T PRK14259 182 CSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVS----------DMTAFFNA 228 (269)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc----------CEEEEEec
Confidence 9999998865554444 33348999999954 44444 34666664
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-23 Score=181.76 Aligned_cols=169 Identities=12% Similarity=0.081 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..+
T Consensus 20 ~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 84 (229)
T cd03254 20 KDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDP-----------QKGQILIDGIDIRDISRKS----LRSMIGVVLQ 84 (229)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEeHHHcCHHH----HhhhEEEecC
Confidence 578899999999999999999999999999999988 8899999987653211100 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+..... . ...+.+.++.+ ++ ..++++..||+||+||+.+|
T Consensus 85 ~~~~~~~tv~~~~~~~~~~~-~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 85 DTFLFSGTIMENIRLGRPNA-T---DEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred CchhhhhHHHHHHhccCCCC-C---HHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 1111111111111 1 11222223322 22 34556789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+++||||++||+.....+.+.+ ....++|++||+......+ ..+++++...+
T Consensus 161 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~----------d~i~~l~~g~~ 215 (229)
T cd03254 161 LILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNA----------DKILVLDDGKI 215 (229)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhC----------CEEEEEeCCeE
Confidence 9999999999998866554444 3334899999996544333 34566665544
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-23 Score=200.76 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=108.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.. . .....++..|
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~~~~~~~---~-~~~~i~~~~q 84 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPL-----------LSGERQSQFSHITRLSFE---Q-LQKLVSDEWQ 84 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCceEEECCcccccCCHH---H-HHHHhceecc
Confidence 578888899999999999999999999999999888 889999887654211100 0 0000111111
Q ss_pred HHh--hhccC-cEE-EEEecCC-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIA--VSKSS-DIV-LMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~--~~~~~-d~i-~~v~~~~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
... .+... ... +.+.+.. ......+++.++++.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 164 (490)
T PRK10938 85 RNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFD 164 (490)
T ss_pred CcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 100 00000 000 0000000 011223467788999999 57889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+||+.....+.+.+ ...+ ++|++||+.. +.++||+
T Consensus 165 ~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~ 204 (490)
T PRK10938 165 GLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQF 204 (490)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCE
Confidence 99999866555544 3334 9999999944 4455554
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-23 Score=180.48 Aligned_cols=176 Identities=22% Similarity=0.195 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|. ..+.+|.|.++|.++...+.. ....++..|
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~-------~~~~~G~i~~~g~~~~~~~~~------~~~i~~~~q 69 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPG-------LTQTSGEILLDGRPLLPLSIR------GRHIATIMQ 69 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCc-------cCccccEEEECCEechhhhhh------hheeEEEec
Confidence 4678888899999999999999999999999998651 002589999999775321110 001111111
Q ss_pred HHh-hh----ccCcEEEEEec--CCCchhhHHHHHHHHHHcccc-----ccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA-VS----KSSDIVLMVLD--ASKSEGHRQILTKELEAVGLR-----LNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~-~~----~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l~-----~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .+ ...+.+.+... ........+.+.++++.+++. .++.+..||+||+||+++| +++
T Consensus 70 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllL 149 (230)
T TIGR02770 70 NPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIA 149 (230)
T ss_pred CchhhcCcccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 100 00 00000000000 001122334577889999883 5778999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||......+ +..+.. ..++|++||+.+ +..++| .+++++...+.
T Consensus 150 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d----------~i~~l~~G~i~ 205 (230)
T TIGR02770 150 DEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIAD----------EVAVMDDGRIV 205 (230)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999886555 444433 238999999954 334443 45666655443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-23 Score=206.36 Aligned_cols=179 Identities=14% Similarity=0.158 Sum_probs=116.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-----ecCCCccc-----c
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-----LDLPGIIE-----G 122 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-----~d~~g~~~-----~ 122 (317)
.+++|++..|+++||+|+||||||||+++|+|...| .+|.|.++|..+.- ++...... .
T Consensus 33 ~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 101 (623)
T PRK10261 33 RNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQ-----------AGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101 (623)
T ss_pred EeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCeEEEECCEEeccccccccccccCCHHHHHHH
Confidence 578899999999999999999999999999999988 78999998865410 00000000 0
Q ss_pred ccCCchhHHHHH--hhh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE-
Q 021103 123 ASEGKGRGRQVI--AVS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 123 ~~~~~~~~~~~~--~~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia- 188 (317)
....+++++|.. ... ...+.+.+... ........+++.++|+.+|+ .+++++.+|||||+||+.||
T Consensus 102 r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~ 181 (623)
T PRK10261 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAM 181 (623)
T ss_pred hCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHH
Confidence 001122222221 011 11111111111 11112233567788999998 26789999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHH---HHHHhccc-C-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQ---ILHEYKIH-N-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~---~l~~l~~~-~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
|++||||++||+..... +++.+... + ++|++|||.. +.++|| .++++++.-+..
T Consensus 182 AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad----------ri~vl~~G~i~~ 249 (623)
T PRK10261 182 ALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD----------RVLVMYQGEAVE 249 (623)
T ss_pred HHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC----------EEEEeeCCeecc
Confidence 99999999999998544 55555432 4 8999999954 445444 466776655543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.7e-23 Score=181.13 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|.++...+... .....++..+
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 83 (234)
T cd03251 19 RDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDV-----------DSGRILIDGHDVRDYTLAS----LRRQIGLVSQ 83 (234)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccC-----------CCCEEEECCEEhhhCCHHH----HHhhEEEeCC
Confidence 578888889999999999999999999999999988 8999999997653211000 0001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhH-----HHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~-----~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+........... ..+.++++.+ ++ ..+.++..||+||+||+.+| +++|
T Consensus 84 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLD 163 (234)
T cd03251 84 DVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILD 163 (234)
T ss_pred CCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 10000 1111111111101110000 0123444444 33 45677899999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+.+.+ ....++|++||+.....
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 201 (234)
T cd03251 164 EATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIE 201 (234)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh
Confidence 999999999866555544 33348999999965433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-22 Score=193.20 Aligned_cols=156 Identities=15% Similarity=0.171 Sum_probs=107.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|........+++... . .+.+
T Consensus 41 ~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P-----------~sGeI~I~G~~~~i~~~~~l~~~----l-TV~E 104 (549)
T PRK13545 41 NNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMP-----------NKGTVDIKGSAALIAISSGLNGQ----L-TGIE 104 (549)
T ss_pred eeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEeeeEEeccccCCC----C-cHHH
Confidence 578899999999999999999999999999999988 89999999875321111122110 0 0111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.+.... ...........+.+.++++.+++ ..++++..|||||+||+++| +++||||++||+.
T Consensus 105 nL~l~~-------~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~ 177 (549)
T PRK13545 105 NIELKG-------LMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQT 177 (549)
T ss_pred HHHhhh-------hhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 111000 00011112223456678888988 67889999999999999988 9999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCCC-hhhHHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
....+++.+ ... .++|++||+.. +.++||+
T Consensus 178 sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~Dr 212 (549)
T PRK13545 178 FTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTK 212 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 866555544 333 48999999954 4444443
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-23 Score=184.48 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=104.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. -.|.+|.|.++|.++...+.. .. ..+...++..|
T Consensus 36 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~I~~~g~~i~~~~~~-~~-~~~~~i~~v~q 107 (267)
T PRK14235 36 FDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTID------GCRVTGKITLDGEDIYDPRLD-VV-ELRARVGMVFQ 107 (267)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccccc------CCCCceEEEECCEECcccccc-hH-HHhhceEEEec
Confidence 57889999999999999999999999999999975300 012689999999876321100 00 00011111111
Q ss_pred HHhhhc--cCcEEEEEe--cCC--CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK--SSDIVLMVL--DAS--KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~--~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.. ... ........+.++++.+++ ..++.+..||+||+||+++| +++
T Consensus 108 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL 187 (267)
T PRK14235 108 KPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILM 187 (267)
T ss_pred CCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111110 011111110 000 111223456778888887 24677899999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
||||++||+.....+++.+ ....++|++||+...
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~ 224 (267)
T PRK14235 188 DEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQ 224 (267)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHH
Confidence 9999999999866555544 333489999999543
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.9e-23 Score=182.44 Aligned_cols=178 Identities=17% Similarity=0.138 Sum_probs=111.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC---CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH---SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~---~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|.. ++ ++.+|.|.++|.++...+. .. .......++
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~---------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~ 88 (250)
T PRK14245 20 KGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA---------TRLEGEIRIDGRNIYDKGV-QV-DELRKNVGM 88 (250)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCC---------CCCceEEEECCEecccccc-cH-HHHhhheEE
Confidence 5778888899999999999999999999999973 22 1147999999987642110 00 000111111
Q ss_pred HHHHHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+|....+. ..+++.+.... .......+.+.++++.+++ ..++++..||+||+||+.+| +
T Consensus 89 v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 168 (250)
T PRK14245 89 VFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVL 168 (250)
T ss_pred EecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 111111110 01111111110 1111223456778888886 24678899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||||++||+.....+.+.+ ....++|++||+.. +.+.+| .+++++..-+.
T Consensus 169 lLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d----------~v~~l~~G~~~ 224 (250)
T PRK14245 169 LMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSD----------KTAFFYMGEMV 224 (250)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCC----------EEEEEECCEEE
Confidence 999999999999866554444 33348999999955 344443 35566655443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-23 Score=183.92 Aligned_cols=181 Identities=16% Similarity=0.107 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...... ..|.+|.|.++|.++...+ +.. .......++..|
T Consensus 38 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~i~~~g~~i~~~~-~~~-~~~~~~i~~v~q 109 (268)
T PRK14248 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIP------SARSEGEILYEGLNILDSN-INV-VNLRREIGMVFQ 109 (268)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccC------CCCCceEEEECCEEccccc-ccH-HHHhccEEEEec
Confidence 57888899999999999999999999999999753100 0027899999998763211 000 000111122111
Q ss_pred HHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... .. ......+.+.+.++.+++ ..++++.+||+||+||+.|| +++|
T Consensus 110 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 110 KPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 111111 0111111110 00 011123345667777766 25678999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++|+ .+++++...+.
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~v~~l~~G~i~ 242 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSD----------RTAFFLNGDLV 242 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCC----------EEEEEECCEEE
Confidence 999999999866554444 33358999999955 444443 45666655443
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.9e-23 Score=197.54 Aligned_cols=171 Identities=19% Similarity=0.188 Sum_probs=113.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecC-CCccccc------c
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDL-PGIIEGA------S 124 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~-~g~~~~~------~ 124 (317)
.++++.+.+|.++||||+|||||||||++|+|...| .+|.|.+.+ ..+.++.. +...... .
T Consensus 20 ~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~-----------~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~ 88 (530)
T COG0488 20 ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-----------DSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVI 88 (530)
T ss_pred cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcC-----------CCCeEeecCCceEEEeCCCCCcCCCccHHHHHH
Confidence 567788888999999999999999999999999988 889988754 34544321 1111000 0
Q ss_pred CCchhHHHHHhhhc-----cCcEEEE-------EecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---
Q 021103 125 EGKGRGRQVIAVSK-----SSDIVLM-------VLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS--- 188 (317)
Q Consensus 125 ~~~~~~~~~~~~~~-----~~d~i~~-------v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia--- 188 (317)
.+.....+....+. .++.... ............++...|..+|+ ..++++.+||||++.|+++|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 89 EGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred hhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHHHHHHHH
Confidence 00000000000000 0111000 00000011123456778888888 33899999999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHHHHHhc-ccCcEEEecCC-CChhhHHHHHhc
Q 021103 189 ------FNSTLPLTHVDEKLCYQILHEYK-IHNAEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 189 ------lilDEPt~~LD~~~~~~~l~~l~-~~~~~i~~shd-~~~~~~~~~~~~ 234 (317)
|++||||||||.+++.-+-..+. ..+++|+|||| ..++.+|+.+..
T Consensus 169 ~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ 222 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILE 222 (530)
T ss_pred hcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEE
Confidence 89999999999999877777775 44599999999 667888877654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-23 Score=201.37 Aligned_cols=165 Identities=15% Similarity=0.109 Sum_probs=109.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|..+| .+|.|.++|.++...+.. .......++.+|
T Consensus 280 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-----------~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 345 (510)
T PRK15439 280 RNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA-----------RGGRIMLNGKEINALSTA---QRLARGLVYLPE 345 (510)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC-----------CCcEEEECCEECCCCCHH---HHHhCCcEECCC
Confidence 578899999999999999999999999999999888 889999998765321100 000011111111
Q ss_pred HH---hhhc---cCcEEEEE----ecC-CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------e
Q 021103 133 VI---AVSK---SSDIVLMV----LDA-SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~---~~~~---~~d~i~~v----~~~-~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.. ..+. ..+.+... ... .......+.+.++|+.+++ ..++++.+|||||+||+.|| |
T Consensus 346 ~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 346 DRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred ChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 10 0000 01111000 000 0111233457788999998 36788999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
++||||++||+.....+.+.+ ... .++|++|||.. +.++||+
T Consensus 426 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~ 472 (510)
T PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADR 472 (510)
T ss_pred EECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999866655544 333 48999999954 4444443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8e-23 Score=199.39 Aligned_cols=166 Identities=12% Similarity=0.149 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|...| +.+|.|.++|.++.... + ........++..|
T Consensus 277 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p----------~~~G~i~~~g~~~~~~~-~--~~~~~~~i~~v~q 343 (500)
T TIGR02633 277 DDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG----------KFEGNVFINGKPVDIRN-P--AQAIRAGIAMVPE 343 (500)
T ss_pred ccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC----------CCCeEEEECCEECCCCC-H--HHHHhCCCEEcCc
Confidence 578899999999999999999999999999999863 16899999987652100 0 0001112222222
Q ss_pred HHh---hhc---cCcEEEEEe-----cC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE--------
Q 021103 133 VIA---VSK---SSDIVLMVL-----DA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 133 ~~~---~~~---~~d~i~~v~-----~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
... .+. ..+.+.+.. .. .........+.++|+.+++ ..++++..|||||+||+.||
T Consensus 344 ~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~ 423 (500)
T TIGR02633 344 DRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPR 423 (500)
T ss_pred chhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCC
Confidence 210 111 112222210 00 0112233467889999998 25788999999999999998
Q ss_pred -eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 189 -FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+ +..+...+ ++|++|||.. +.++||+
T Consensus 424 lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 424 VLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred EEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 999999999999986654 45554444 9999999954 4455544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-23 Score=181.13 Aligned_cols=157 Identities=14% Similarity=0.060 Sum_probs=101.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHHHHHhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++... ...++..+...... .. .
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~---~~--~ 65 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPP-----------AKGTVKVAGASPGKGWRHIGYVPQRHEFAW---DF--P 65 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCccchHhhCcEEEecccccccC---CC--C
Confidence 3456999999999999999999999999887 899999998754100 00111111100000 00 0
Q ss_pred hccCcEEEEEe----cC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 137 SKSSDIVLMVL----DA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 137 ~~~~d~i~~v~----~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
....+.+.+.. .. .........+.++++.+++ ..++++..||+||+||+.++ +++||||++||
T Consensus 66 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD 145 (223)
T TIGR03771 66 ISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145 (223)
T ss_pred ccHHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 00001110000 00 0111233457788999998 56788999999999999988 99999999999
Q ss_pred HHHHHHHHHHhc---ccC-cEEEecCCCC-hhhHHH
Q 021103 200 EKLCYQILHEYK---IHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l~---~~~-~~i~~shd~~-~~~~~~ 230 (317)
+.+...+.+.+. ..+ ++|++||+.. +.+++|
T Consensus 146 ~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d 181 (223)
T TIGR03771 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCD 181 (223)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 998665555443 334 8999999955 444444
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-23 Score=182.48 Aligned_cols=161 Identities=17% Similarity=0.140 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.+.++|.++.-.+. .....++.++
T Consensus 16 ~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-----------~~G~v~i~g~~~~~~~~------~~~~i~~~~q 78 (235)
T cd03299 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKP-----------DSGKILLNGKDITNLPP------EKRDISYVPQ 78 (235)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEcCcCCh------hHcCEEEEee
Confidence 578888889999999999999999999999999888 88999999976532110 0111111111
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+.+.+.. .........+.+.++++.+++ ..++++..||+||+||+++| +++||||+
T Consensus 79 ~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~ 158 (235)
T cd03299 79 NYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFS 158 (235)
T ss_pred cCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcc
Confidence 1111111 11111100 001112223456778889998 67888999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~ 230 (317)
+||+.+...+.+.+ .. ..+++++||+.. +.+++|
T Consensus 159 gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d 198 (235)
T cd03299 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALAD 198 (235)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 99999866655544 33 349999999954 344554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-23 Score=200.22 Aligned_cols=164 Identities=12% Similarity=0.153 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.|.++|.++...+. ........++..|
T Consensus 269 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-----------~~G~I~~~g~~i~~~~~---~~~~~~~i~~v~q 334 (501)
T PRK10762 269 NDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR-----------TSGYVTLDGHEVVTRSP---QDGLANGIVYISE 334 (501)
T ss_pred ccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCCCCH---HHHHHCCCEEecC
Confidence 678999999999999999999999999999999988 89999999976532110 0000111222222
Q ss_pred HH---hhh---ccCcEEEEE----ecC----CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VI---AVS---KSSDIVLMV----LDA----SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~---~~~---~~~d~i~~v----~~~----~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
.. ..+ ...+.+.+. ... .......+.+.++|+.+++ ..++++..|||||+||+.+|
T Consensus 335 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p 414 (501)
T PRK10762 335 DRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRP 414 (501)
T ss_pred ccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 11 000 011111110 000 0111223467888999998 36888999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+.+. +...+ ++|++|||.. +.++||
T Consensus 415 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d 463 (501)
T PRK10762 415 KVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463 (501)
T ss_pred CEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCC
Confidence 999999999999986555444 43334 8999999954 344443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-23 Score=202.50 Aligned_cols=173 Identities=17% Similarity=0.152 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|..+|.. ..|.+|.|.++|.++...+...+........++.+|
T Consensus 26 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q 99 (529)
T PRK15134 26 NDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPP------VVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ 99 (529)
T ss_pred eceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCc------CCccceEEEECCEecccCCHHHHHHHhcCceEEEec
Confidence 67889999999999999999999999999999986410 012589999999876432211000000011222222
Q ss_pred HHh--hh---ccCcEEEEEec---CCCchhhHHHHHHHHHHccc-c----ccccCCcccccceeeeeeE---------ee
Q 021103 133 VIA--VS---KSSDIVLMVLD---ASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~--~~---~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l-~----~~~~~~~LS~g~~qr~~ia---------li 190 (317)
... .. ...+.+.+... .........++.++|+.+++ . .++++.+|||||+||++|| ++
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~lll 179 (529)
T PRK15134 100 EPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLI 179 (529)
T ss_pred CchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEE
Confidence 110 00 00011100000 11122234567888999998 2 4788999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~ 231 (317)
+||||++||+.....+++.+. . ..++|++|||.+ +..++|+
T Consensus 180 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dr 226 (529)
T PRK15134 180 ADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226 (529)
T ss_pred EcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCE
Confidence 999999999998666555443 2 248999999955 4455554
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-23 Score=180.05 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~---~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++++.+|++++|+|+||||||||+++|+|... + .+|.+.++|.++...+ .....++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~-----------~~G~i~~~g~~~~~~~-------~~~~i~~ 85 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGT-----------TSGQILFNGQPRKPDQ-------FQKCVAY 85 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCC-----------CceEEEECCEECChHH-------hcccEEE
Confidence 57888899999999999999999999999999987 6 7899999987642100 0111111
Q ss_pred HHHHHhhhc---cCcEEEEEe--cC-C-Cc-hhhHHHHHH-HHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSK---SSDIVLMVL--DA-S-KS-EGHRQILTK-ELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~---~~d~i~~v~--~~-~-~~-~~~~~~~~~-~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+|....+. ..+++.+.. .. . .. ......+.+ .++.+++ ..++.+..||+||+||+.++ +
T Consensus 86 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~il 165 (226)
T cd03234 86 VRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVL 165 (226)
T ss_pred eCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEE
Confidence 111111110 011111100 00 0 01 111123344 7888887 46778899999999999988 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCC--ChhhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDA--TVDDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~--~~~~~~~ 230 (317)
++||||++||+.+...+.+.+ ...+ ++|++||+. .+.+.+|
T Consensus 166 llDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 166 ILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCC
Confidence 999999999999866555544 3334 999999996 4566554
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=198.19 Aligned_cols=165 Identities=9% Similarity=0.080 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|..+| .+|.|.++|.++.... + ........++.+|
T Consensus 265 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~-~--~~~~~~~i~~~~q 330 (491)
T PRK10982 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREK-----------SAGTITLHGKKINNHN-A--NEAINHGFALVTE 330 (491)
T ss_pred ceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcC-----------CccEEEECCEECCCCC-H--HHHHHCCCEEcCC
Confidence 578899999999999999999999999999999988 8999999987653211 0 0000011111111
Q ss_pred HH---hhhccC--------cEEEEEecC---CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 133 VI---AVSKSS--------DIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~---~~~~~~--------d~i~~v~~~---~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
.. ..+... +.+...... .........+.++++.+++ ..++++.+|||||+||+.+|
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 331 ERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred chhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 10 001100 001000000 0111223456788888888 35889999999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCC-hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+.+ .+... .++|++|||.+ +..+||+
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~ 460 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDR 460 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCE
Confidence 99999999999998666544 44433 49999999954 4444443
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.1e-23 Score=180.60 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=110.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+ ..|.+.++|.++...+. .....++.++
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~i~g~~~~~~~~------~~~~i~~~~q 79 (237)
T TIGR00968 17 DDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQP-----------DSGRIRLNGQDATRVHA------RDRKIGFVFQ 79 (237)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEEcCcCCh------hhcCEEEEec
Confidence 578888999999999999999999999999999887 88999999876532111 0111222222
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+.+.++++.+++ ..++.+..||+||+||+.++ +++||||+
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1111111 1111111111 1111223456788899988 57888999999999999988 89999999
Q ss_pred CCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHH
Q 021103 197 HVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~ 231 (317)
+||+.+...+++.+ .. ..++|++||+.. +.+++|+
T Consensus 160 ~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 160 ALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 99999866555544 33 349999999965 3555543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=178.96 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=107.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.....+. ..+|.|.++|.++...+...+ ....++.+|
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~---~~~G~i~~~g~~~~~~~~~~~----~~~~~~v~q 90 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA---RVTGDVTLNGEPLAAIDAPRL----ARLRAVLPQ 90 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCccccccc---CCceEEEECCEEcccCCHHHH----HhhcEEecc
Confidence 5788889999999999999999999999999998761000000 018999999987642221100 000011111
Q ss_pred HHh---hhccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------------
Q 021103 133 VIA---VSKSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------------- 188 (317)
Q Consensus 133 ~~~---~~~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------------- 188 (317)
... .....+++.+... ........+.+.++|+.+++ ..++++..||+||+||+.++
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 100 0011111111100 00011233457788999998 57888999999999999774
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---ccc--CcEEEecCCCCh-hhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIH--NAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~--~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+++.+ ... .++|++||+... .+++|
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d 223 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHAD 223 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6889999999999866555544 332 389999999553 34443
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=182.13 Aligned_cols=181 Identities=17% Similarity=0.138 Sum_probs=111.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+..+ .+.+|.|.++|.++...+.. . .......++.+|
T Consensus 29 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~q 100 (259)
T PRK14274 29 KNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN------VKLTGEMNYNGSNILKGKVD-L-VELRKNIGMVFQ 100 (259)
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCC------CCCceEEEECCEEccccccC-H-HHHhhceEEEec
Confidence 578888999999999999999999999999998752000 01479999999876321100 0 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+..... ........+.++++.+++ ..++++.+||+||+||+.++ +++|
T Consensus 101 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 101 KGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred CCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 111111 111111111111 111123346667888776 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+ .+....++|++||+.. +.+.+| .+++++..-+.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d----------~i~~l~~G~i~ 233 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSD----------QTAFFYMGELV 233 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999998655544 4434459999999954 344443 45566654443
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=202.92 Aligned_cols=167 Identities=17% Similarity=0.115 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+.+|+++||+|+|||||||||++|+|...| ++|.|.++|.. +.++..... .......+++.
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-----------d~G~I~~~~~~~i~~~~q~~~-~~~~~~~~~v~ 85 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLALLKNEISA-----------DGGSYTFPGNWQLAWVNQETP-ALPQPALEYVI 85 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCC-CCCCCHHHHHH
Confidence 678899999999999999999999999999999888 89999987742 333321100 00011122222
Q ss_pred HHHhhhcc----------CcEEEEEe------cCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE----
Q 021103 132 QVIAVSKS----------SDIVLMVL------DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 132 ~~~~~~~~----------~d~i~~v~------~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---- 188 (317)
+....+.. .+....+. +.........++..+|+.+|+ ..++++..|||||+||+.||
T Consensus 86 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~ 165 (638)
T PRK10636 86 DGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165 (638)
T ss_pred HhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHc
Confidence 21111000 00000000 000011123467888999998 35889999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
|++||||+|||+..+..+.+.+.. .+++|++|||.. +..+|+.
T Consensus 166 ~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~ 215 (638)
T PRK10636 166 CRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDK 215 (638)
T ss_pred cCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCE
Confidence 999999999999998777666654 459999999954 4555554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.1e-23 Score=201.00 Aligned_cols=165 Identities=19% Similarity=0.158 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+|+||||||||+++|+|.. + .+|.|+++|.++...+..... ..+...++.+|
T Consensus 303 ~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~~-~~~~~i~~v~q 369 (529)
T PRK15134 303 KNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-----------SQGEIWFDGQPLHNLNRRQLL-PVRHRIQVVFQ 369 (529)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-----------CCcEEEECCEEccccchhhHH-HhhhceEEEEe
Confidence 5788999999999999999999999999999997 4 579999999876432210000 00111122122
Q ss_pred HH--hhh---ccCcEEEEEe--cC--CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VI--AVS---KSSDIVLMVL--DA--SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~--~~~---~~~d~i~~v~--~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
.. ..+ ...+++.+.. .. .........+.++|+.+++ ..++++.+|||||+||+.|| +++
T Consensus 370 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llll 449 (529)
T PRK15134 370 DPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIIL 449 (529)
T ss_pred CchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEe
Confidence 11 011 1111111110 00 1111233567788999998 36889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+++.+. . ..++|++|||.. +.++||
T Consensus 450 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d 494 (529)
T PRK15134 450 DEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCH 494 (529)
T ss_pred eCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcC
Confidence 99999999998666555443 3 248999999954 444444
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-22 Score=184.69 Aligned_cols=168 Identities=15% Similarity=0.089 Sum_probs=105.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .|.+|.|.++|.++...... . ...+...++.
T Consensus 56 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~--------~~~~G~I~~~g~~i~~~~~~-~-~~~~~~i~~v 125 (286)
T PRK14275 56 KKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS--------CHTTGALMFDGEDIYGKFTD-E-VLLRKKIGMV 125 (286)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC--------CCCceEEEECCEEhhhcccc-h-HHhhhcEEEE
Confidence 57889999999999999999999999999999753 10 01689999999765321100 0 0001111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .......+.+.++++.+++ ..++++..||+||+||+.+| ++
T Consensus 126 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lll 205 (286)
T PRK14275 126 FQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILL 205 (286)
T ss_pred CCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111 00111111110 0 1111123456677777775 35778999999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
+||||++||+.....+++.+. ...++|++||+... .+++|
T Consensus 206 LDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d 249 (286)
T PRK14275 206 LDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSD 249 (286)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 999999999998666655543 33489999999554 44444
|
|
| >TIGR02729 Obg_CgtA Obg family GTPase CgtA | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.2e-21 Score=175.20 Aligned_cols=170 Identities=28% Similarity=0.412 Sum_probs=124.0
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|+|||.||||||||||+|++..+.+++|||||+.|..|.+.+++ ..+.++|+||+.+......+...++
T Consensus 150 ~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~f 229 (329)
T TIGR02729 150 LRLELKLLADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRF 229 (329)
T ss_pred EEEEeeccccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHH
Confidence 344444557899999999999999999999887799999999999999999987 8899999999987665555566677
Q ss_pred HhhhccCcEEEEEecCCCch--hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 134 IAVSKSSDIVLMVLDASKSE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
+..+..++++++++|..... ...+.+.. +.+++.
T Consensus 230 lrhierad~ll~VvD~s~~~~~~~~e~l~~--------------------------------------------l~~EL~ 265 (329)
T TIGR02729 230 LKHIERTRVLLHLIDISPLDGRDPIEDYEI--------------------------------------------IRNELK 265 (329)
T ss_pred HHHHHhhCEEEEEEcCccccccCHHHHHHH--------------------------------------------HHHHHH
Confidence 77778899999999976431 11111111 111110
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc--CCCeEEEeccccccHHHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~--~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. .......+|+++|+||+|+......+ .+.+ ...++++||++++|+++|++.|.+
T Consensus 266 ~-------------------~~~~l~~kp~IIV~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~ 326 (329)
T TIGR02729 266 K-------------------YSPELAEKPRIVVLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAE 326 (329)
T ss_pred H-------------------hhhhhccCCEEEEEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHH
Confidence 0 00001247999999999998654332 2222 135889999999999999999987
Q ss_pred Hh
Q 021103 286 EM 287 (317)
Q Consensus 286 ~l 287 (317)
.+
T Consensus 327 ~l 328 (329)
T TIGR02729 327 LL 328 (329)
T ss_pred Hh
Confidence 65
|
This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=181.94 Aligned_cols=182 Identities=18% Similarity=0.153 Sum_probs=113.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++++.+|+++||+|+||||||||+++|+|...|... .|.+|.|.++|.++...+.+ . .......++.+
T Consensus 36 l~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v~ 107 (267)
T PRK14237 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDI------ARVTGQILYRGIDINRKEIN-V-YEMRKHIGMVF 107 (267)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCC------CCcceEEEECCEEcccccCC-h-HHHhcceEEEe
Confidence 3578899999999999999999999999999999753000 02689999999876321100 0 00011112111
Q ss_pred HHHhhh--ccCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+ ...+++.+... .. ........+.+.++.+++ ..++++..||+||+||+++| +++
T Consensus 108 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 187 (267)
T PRK14237 108 QRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLM 187 (267)
T ss_pred cCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 211111 11111211111 00 111223456677888776 35778999999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+.+ .+....++|++||+... .++|| .+++++...+.
T Consensus 188 DEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d----------~i~~l~~G~i~ 241 (267)
T PRK14237 188 DEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASD----------YTAFFYLGDLI 241 (267)
T ss_pred eCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcC----------EEEEEECCEEE
Confidence 99999999988655544 44333489999999643 34443 46667665544
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=180.03 Aligned_cols=168 Identities=18% Similarity=0.169 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++.+|+.++|+|+||||||||+++|+|... |. .+++|.|.++|.++...+. ... ......++.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~v~~~g~~i~~~~~-~~~-~~~~~i~~~ 90 (252)
T PRK14256 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPS--------ARVTGKILLDDTDIYDRGV-DPV-SIRRRVGMV 90 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCC--------CCCceEEEECCEEcccccC-ChH-HhhccEEEE
Confidence 57888999999999999999999999999999975 30 0147999999987632110 000 001111111
Q ss_pred HHHHhhhcc---CcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------e
Q 021103 131 RQVIAVSKS---SDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+|....+.. .+.+.+.... .......+.+.+.++.+++ ..+..+..||+||+||+++| +
T Consensus 91 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~ll 170 (252)
T PRK14256 91 FQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVI 170 (252)
T ss_pred ecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 221111111 1111111000 1111123456777888886 24567899999999999988 8
Q ss_pred eecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCCh-hhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~-~~~~~ 230 (317)
++||||++||+.+...+.+ .+....++|++||+... .++||
T Consensus 171 llDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 171 LMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCC
Confidence 9999999999998655544 44344599999999543 34444
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=163.47 Aligned_cols=165 Identities=16% Similarity=0.160 Sum_probs=123.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc--cccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~--~~~~~~~~~~~ 130 (317)
-+++++.+.|+.++++||+|+|||||++.|.-+..| .+|...+.|..+.+-.+|+- +...+...+++
T Consensus 19 fdi~l~~~~getlvllgpsgagkssllr~lnlle~p-----------~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmv 87 (242)
T COG4161 19 FDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMP-----------RSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMV 87 (242)
T ss_pred eeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCC-----------CCCeEEecccccccccCccHHHHHHHHHhhhhh
Confidence 466778888999999999999999999999877777 89999999888777666653 11233455666
Q ss_pred HHHHhhhccCcEEEEEecC------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 131 RQVIAVSKSSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
+|.+...++..++...+.+ ........++.++|.++.+ ..++.|-.|||||+||++|| +++||
T Consensus 88 fqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfde 167 (242)
T COG4161 88 FQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDE 167 (242)
T ss_pred hhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecC
Confidence 6655444444443333222 1223345567788898888 78999999999999999998 88999
Q ss_pred CCCCCCHHHHHH---HHHHhcccC-cEEEecCCCChhhH
Q 021103 194 PLTHVDEKLCYQ---ILHEYKIHN-AEVLFREDATVDDL 228 (317)
Q Consensus 194 Pt~~LD~~~~~~---~l~~l~~~~-~~i~~shd~~~~~~ 228 (317)
||+.|||+...+ +++++..-+ +-+++||+.++++-
T Consensus 168 ptaaldpeitaqvv~iikel~~tgitqvivthev~va~k 206 (242)
T COG4161 168 PTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred cccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHh
Confidence 999999997554 555555555 88999999776653
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-23 Score=181.46 Aligned_cols=160 Identities=12% Similarity=0.047 Sum_probs=101.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++.+|
T Consensus 19 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~q 83 (237)
T cd03252 19 DNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVP-----------ENGRVLVDGHDLALADPAW----LRRQVGVVLQ 83 (237)
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCeehHhcCHHH----HhhcEEEEcC
Confidence 578889999999999999999999999999999988 8999999997653211000 0011111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhH-----HHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHR-----QILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~-----~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+........... ..+.++++.+ ++ ..+.++.+||+||+||+.+| +++|
T Consensus 84 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 163 (237)
T cd03252 84 ENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFD 163 (237)
T ss_pred CchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEe
Confidence 11111 1112221111111110000 0122334443 23 34678899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+.+.+ ....++|++||+.....
T Consensus 164 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~ 201 (237)
T cd03252 164 EATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK 201 (237)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 999999999866555544 33348999999976443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=179.94 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .+.+|.|.++|.++...+.. . .......++.
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~--------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~v 91 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPE--------VTITGSIVYNGHNIYSPRTD-T-VDLRKEIGMV 91 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCC--------CCccceEEECCEECcCcccc-h-HhhhhcEEEE
Confidence 57888889999999999999999999999999853 30 01379999998765211000 0 0000111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .........+.++++.+++ ..++.+.+||+||+||+++| ++
T Consensus 92 ~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14239 92 FQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIIL 171 (252)
T ss_pred ecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111111 11111111110 1 1111123456667777775 35778899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||||++||+.....+.+.+. ...++|++||+.+ +.+.+ ..++++++..+.
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~----------d~i~~l~~G~i~ 226 (252)
T PRK14239 172 LDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRIS----------DRTGFFLDGDLI 226 (252)
T ss_pred EcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999998665554443 3359999999954 44444 346677665443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.8e-23 Score=185.78 Aligned_cols=170 Identities=14% Similarity=0.086 Sum_probs=107.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+... .......++.+|
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~------~~p~~G~I~i~G~~i~~~~~~~--~~~~~~i~~v~q 127 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLID------AARVEGELTFRGKNVYDADVDP--VALRRRIGMVFQ 127 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCccc------CCCCceEEEECCEEccccccch--HhhhccEEEEec
Confidence 57888999999999999999999999999999975200 0016899999998753211000 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+++.+..... ........+.++++.+++ ..++++.+||+||+||++|| +++|||
T Consensus 128 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 128 KPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred CCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 111111 011111100000 011223456778888876 35788999999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
|++||+.....+.+.+ ....++|++||+... ..+++
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~d 247 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISD 247 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 9999999865554444 334599999999554 44444
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.6e-23 Score=181.63 Aligned_cols=180 Identities=16% Similarity=0.102 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+.+. .......++.+|
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~------~~~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~q 93 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVP------NCKVKGELDIDGIDVYSVDTNV--VLLRAKVGMVFQ 93 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCC------CCCcceEEEECCEehHhcccch--HHHhhhEEEEec
Confidence 57888999999999999999999999999999975100 0026899999997653221100 000011111111
Q ss_pred HHhhhc--cCcEEEEEe---cCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK--SSDIVLMVL---DAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~---~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.. +.. ........+.++++.+++ ..++.+..||+||+||+.++ +++
T Consensus 94 ~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 173 (251)
T PRK14244 94 KPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLM 173 (251)
T ss_pred CcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 111110 011111110 000 111123346677888887 24567899999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
||||++||+.....+.+.+ ....++|++||+... .+++| .+++++..-+
T Consensus 174 DEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d----------~i~~l~~G~i 226 (251)
T PRK14244 174 DEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSD----------RVAFFQSGRI 226 (251)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcC----------EEEEEECCEE
Confidence 9999999998865554444 333499999999553 34443 4566665443
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=179.08 Aligned_cols=173 Identities=17% Similarity=0.125 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+.++|+|+||||||||+++|+|..+| .+|.|.++|.++...+.. . .....++..|
T Consensus 20 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~---~-~~~~i~~~~q 84 (238)
T cd03249 20 KGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDP-----------TSGEILLDGVDIRDLNLR---W-LRSQIGLVSQ 84 (238)
T ss_pred eceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEehhhcCHH---H-HHhhEEEECC
Confidence 578888899999999999999999999999999888 899999999765321100 0 0001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+............ .+.+++..+ ++ ..+..+.+||+||+||+.+| +++|
T Consensus 85 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 164 (238)
T cd03249 85 EPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLD 164 (238)
T ss_pred chhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11000 11122221111111100000 112222222 22 35667889999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+.+....|| .+++++...+
T Consensus 165 EP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d----------~v~~l~~G~i 215 (238)
T cd03249 165 EATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNAD----------LIAVLQNGQV 215 (238)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCC----------EEEEEECCEE
Confidence 999999999866555544 42238999999965444433 3566665544
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.2e-22 Score=171.54 Aligned_cols=176 Identities=17% Similarity=0.139 Sum_probs=122.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|++++++|+|||||||++++|+|...| .+|.+.++|..- ......+..+
T Consensus 41 qdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p-----------~~G~v~V~G~~P-----------f~~~~~~~~~ 98 (325)
T COG4586 41 QDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLP-----------TSGKVRVNGKDP-----------FRRREEYLRS 98 (325)
T ss_pred heeeeecCCCcEEEEEcCCCCcchhhHHHHhCcccc-----------CCCeEEecCcCc-----------chhHHHHHHH
Confidence 688999999999999999999999999999999998 899999987531 1111111111
Q ss_pred HHhhhccCcEEEEEecCC----------C-c-hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKSSDIVLMVLDAS----------K-S-EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~----------~-~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
....+-...-+.+...+. + + ..-.++...+-+.+++ .++.++..||.||+.|+.+| +
T Consensus 99 ~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VL 178 (325)
T COG4586 99 IGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVL 178 (325)
T ss_pred HHHHhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEE
Confidence 111111111111111110 0 1 1123445556667777 58899999999999999887 8
Q ss_pred eecCCCCCCCHHH---HHHHHHHhccc--CcEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 190 NSTLPLTHVDEKL---CYQILHEYKIH--NAEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 190 ilDEPt~~LD~~~---~~~~l~~l~~~--~~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
++||||-|||... ++++++++... .|+++.||+ .+++.+|++ |+.+++..++.++.+..+.
T Consensus 179 fLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~r----------v~~I~~Gqlv~dg~l~~l~ 245 (325)
T COG4586 179 FLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDR----------VLLIDQGQLVFDGTLAQLQ 245 (325)
T ss_pred EecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhh----------eEEeeCCcEeecccHHHHH
Confidence 9999999999876 55666666532 399999999 778888876 6677888777766665543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-22 Score=180.50 Aligned_cols=170 Identities=18% Similarity=0.134 Sum_probs=105.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. | ..+.+|.|.++|.++...+. .. .......++..|
T Consensus 21 ~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p---~~~~~G~v~i~g~~~~~~~~-~~-~~~~~~i~~~~q 92 (251)
T PRK14251 21 HGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDI---E---NIKITGEIKFEGQNIYGSKM-DL-VELRKEVGMVFQ 92 (251)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccc---c---CCCcceEEEECCEEcccccc-hH-HHhhccEEEEec
Confidence 5788888899999999999999999999999997510 0 00168999999976531100 00 000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllD 172 (251)
T PRK14251 93 QPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLD 172 (251)
T ss_pred CCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEec
Confidence 11000 111111111110 1111123456677787776 24678899999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 193 LPLTHVDEKLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
|||++||+.....+.+.+. ...++|++||+... .+.+|
T Consensus 173 EP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d 214 (251)
T PRK14251 173 EPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISD 214 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcC
Confidence 9999999998665555443 33599999999653 44443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-22 Score=201.63 Aligned_cols=178 Identities=15% Similarity=0.162 Sum_probs=124.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+|.|+|...| ..|.|.++|.++..+|...++ +..+++.|
T Consensus 490 ~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p-----------~~G~I~~dg~dl~~i~~~~lR----~~ig~V~Q 554 (709)
T COG2274 490 EDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP-----------QQGRILLDGVDLNDIDLASLR----RQVGYVLQ 554 (709)
T ss_pred hceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEeHHhcCHHHHH----hheeEEcc
Confidence 578899999999999999999999999999999998 899999999998776643322 22232223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+ ..+....+.+.+.+...|. .+...-..||||||||+++|
T Consensus 555 ~~~Lf~gSI~eNi~l----~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~I 630 (709)
T COG2274 555 DPFLFSGSIRENIAL----GNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKI 630 (709)
T ss_pred cchhhcCcHHHHHhc----CCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCE
Confidence 2221111 122211 1122222334444433333 33455678999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++|||||+||+++.+.+.+.+. .+.|+|+++|+...-+. ...|+|+.+.-++..+..+++
T Consensus 631 LlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~----------adrIiVl~~Gkiv~~gs~~el 694 (709)
T COG2274 631 LLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS----------ADRIIVLDQGKIVEQGSHEEL 694 (709)
T ss_pred EEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh----------ccEEEEccCCceeccCCHHHH
Confidence 99999999999999777777665 34699999999765543 456888888877655544443
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-22 Score=182.43 Aligned_cols=166 Identities=20% Similarity=0.203 Sum_probs=107.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+.... .......++..|
T Consensus 29 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~sG~i~~~g~~~~~~~~~~~-~~~~~~i~~v~q 96 (268)
T PRK10419 29 NNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESP-----------SQGNVSWRGEPLAKLNRAQR-KAFRRDIQMVFQ 96 (268)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEeccccChhHH-HHHHhcEEEEEc
Confidence 578899999999999999999999999999999887 89999999976533211000 000011111111
Q ss_pred HHh-hh-c---cCcEEEEEec---CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIA-VS-K---SSDIVLMVLD---ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~-~~-~---~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
... .+ . ..+++.+... ..........+.++++.+++ ..++.+..||+||+||+++| +++|
T Consensus 97 ~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLD 176 (268)
T PRK10419 97 DSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILD 176 (268)
T ss_pred ChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEe
Confidence 110 00 0 0011100000 01112233457788999888 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
|||++||......+ +..+.. ..++|++||+... .+++|
T Consensus 177 EPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 177 EAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 99999999875544 444443 3489999999553 34444
|
|
| >PRK09601 GTP-binding protein YchF; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.5e-21 Score=175.50 Aligned_cols=238 Identities=25% Similarity=0.356 Sum_probs=152.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASE 125 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~ 125 (317)
.++||||.||||||||||+|+|....+++|||||++|..|.+.+.+. ++.++|+||+.+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 57999999999999999999999988999999999999999998762 4899999999987777
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccceeeeeeEeeec
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNST 192 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ialilD 192 (317)
+.+.+.+++..++.+|++++++|+.. +..+.+.+...|....+ .+.++...+....+. .
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~-~------- 154 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKG-G------- 154 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc-c-------
Confidence 66777889999999999999998742 22334445555554444 222222222211000 0
Q ss_pred CCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccC--C-ChhhHHHHhc-----C
Q 021103 193 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--I-GIDDVDKLAR-----Q 262 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~--~-~~~~~~~l~~-----~ 262 (317)
.+...--......+.+.+.. +..+ -..+++.+++ ..+.. ....+|+++|+|+.|. . ..+.++.+.+ .
T Consensus 155 ~~~~~~e~~~l~~v~~~Le~-~~~~-~~~~~~~~e~-~~l~~~~llt~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~ 231 (364)
T PRK09601 155 DKEAKAELELLEKLLEHLEE-GKPA-RTLELTDEEE-KLLKSLQLLTAKPVLYVANVDEDDLADGNPYVKKVREIAAKEG 231 (364)
T ss_pred chhHHHHHHHHHHHHHHHHc-CCCc-ccCCCCHHHH-HHHHHhcccccCCeEEEEECCccccccccHHHHHHHHHHHHcC
Confidence 00000000112223333322 2111 1123333332 22222 2346999999999985 2 3334444332 2
Q ss_pred CCeEEEecccc----------------------ccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 263 PNSVVISCNLK----------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 263 ~~~v~iSa~~~----------------------~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...+++||.-. .+++++....++.|+.+.+||.-+. +- +..++++|+|.
T Consensus 232 ~~~i~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~---ev-rawti~~GstA 302 (364)
T PRK09601 232 AEVVVICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPK---EV-RAWTIKKGTTA 302 (364)
T ss_pred CeEEEEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCC---eE-EEEEeCCCCch
Confidence 34777776321 3778889999999999999994433 22 68999999985
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-22 Score=177.29 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=101.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+........+...++..
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 85 (218)
T cd03290 17 LSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQT-----------LEGKVHWSNKNESEPSFEATRSRNRYSVAYAA 85 (218)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCcccccccccccchhhcceEEEEc
Confidence 3578899999999999999999999999999999987 88999999876542210000000011122222
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+ ...+++.+.... . .....+.++.+++ ..+.++..||+||+||+.||
T Consensus 86 q~~~~~~~t~~~nl~~~~~~--~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 160 (218)
T cd03290 86 QKPWLLNATVEENITFGSPF--N---KQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTN 160 (218)
T ss_pred CCCccccccHHHHHhhcCcC--C---HHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCC
Confidence 211111 111111111110 1 1122334444443 12457889999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHH-----Hhccc-CcEEEecCCCChhh
Q 021103 189 -FNSTLPLTHVDEKLCYQILH-----EYKIH-NAEVLFREDATVDD 227 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~-----~l~~~-~~~i~~shd~~~~~ 227 (317)
+++||||++||+.....+++ .+... .++|++||+.....
T Consensus 161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~ 206 (218)
T cd03290 161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP 206 (218)
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh
Confidence 99999999999998665544 44443 49999999965433
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.6e-22 Score=180.23 Aligned_cols=182 Identities=15% Similarity=0.104 Sum_probs=109.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...|... ...+|.|.++|.++...+. .. .......++.+
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~~ 91 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG------ARVTGRILLDGQDIYGPRV-DP-VAMRRRVGMVF 91 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcC------CCCceeEEECCEEcccCcc-CH-HHhhceeEEEe
Confidence 3578888899999999999999999999999999865100 0137999999876532100 00 00011111111
Q ss_pred HHHhhhcc---CcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 132 QVIAVSKS---SDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 132 ~~~~~~~~---~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
|....+.. .+.+.+... . .......+.+.+.++.+++ ..++++..||+||+||+++| ++
T Consensus 92 q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 171 (252)
T PRK14272 92 QKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILL 171 (252)
T ss_pred ccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 11111110 111111000 0 0111112334455555543 34678899999999999988 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||||++||+.....+.+.+ ....++|++||+... .+++ ..+++++...+.
T Consensus 172 lDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~----------d~i~~l~~G~i~ 226 (252)
T PRK14272 172 MDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVS----------DTTSFFLVGDLV 226 (252)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 99999999999865555444 333589999999553 3333 346666655443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.2e-23 Score=199.71 Aligned_cols=167 Identities=17% Similarity=0.160 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+.+|.|.++|.++...+.. .......++.+|
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~---------~~~~G~i~~~g~~~~~~~~~---~~~~~~i~~v~q 85 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPH---------GTWDGEIYWSGSPLKASNIR---DTERAGIVIIHQ 85 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC---------CCCCeEEEECCEECCCCCHH---HHHhCCEEEEee
Confidence 578889999999999999999999999999998764 12589999999765321100 000111222222
Q ss_pred HHhhhc---cCcEEEEEecC------CCchhhHHHHHHHHHHccc--cc-cccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSK---SSDIVLMVLDA------SKSEGHRQILTKELEAVGL--RL-NKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~------~~~~~~~~~~~~~L~~~~l--~~-~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+. ..+++.+.... .........+.++++.+++ .. ++++.+|||||+||+.+| +++
T Consensus 86 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllL 165 (500)
T TIGR02633 86 ELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLIL 165 (500)
T ss_pred ccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEE
Confidence 211111 11111111100 1111223467788999998 22 467899999999999998 999
Q ss_pred cCCCCCCCHHHHHHHHHH---hcccC-cEEEecCCCC-hhhHHHH
Q 021103 192 TLPLTHVDEKLCYQILHE---YKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~---l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
||||++||+.....+.+. +...+ ++|++|||.. +.++||+
T Consensus 166 DEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 166 DEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCE
Confidence 999999999986665544 43344 8999999944 4555554
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-22 Score=199.45 Aligned_cols=167 Identities=16% Similarity=0.141 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEE-EecCC-CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQ-LLDLP-GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~-~~d~~-g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|..+| .+|.|.++ |.+.. ..+.. .-........++
T Consensus 301 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~ 369 (520)
T TIGR03269 301 DNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-----------TSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGI 369 (520)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEEecCCccccccccchhhHHHHhhhEEE
Confidence 478899999999999999999999999999999987 88999995 43211 00000 000000011111
Q ss_pred HHHHHhhhcc---CcEEEEEec-CCCchhhHHHHHHHHHHcccc-------ccccCCcccccceeeeeeE---------e
Q 021103 130 GRQVIAVSKS---SDIVLMVLD-ASKSEGHRQILTKELEAVGLR-------LNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~-~~~~~~~~~~~~~~L~~~~l~-------~~~~~~~LS~g~~qr~~ia---------l 189 (317)
..|....+.. .+.+.+... ..........+.++|+.+++. .++++.+|||||+||+.|| +
T Consensus 370 v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lL 449 (520)
T TIGR03269 370 LHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIV 449 (520)
T ss_pred EccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1121111110 111110000 011111234577889999982 4788999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc----c-cCcEEEecCCCC-hhhHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK----I-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~----~-~~~~i~~shd~~-~~~~~~ 230 (317)
++||||++||+.....+++.+. . ..++|++|||.. +.+++|
T Consensus 450 llDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 496 (520)
T TIGR03269 450 ILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCD 496 (520)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCC
Confidence 9999999999998766665553 2 348999999955 334443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-22 Score=176.17 Aligned_cols=155 Identities=16% Similarity=0.180 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|........+++... .. ..+
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~----~t-v~e 104 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSP-----------TVGKVDRNGEVSVIAISAGLSGQ----LT-GIE 104 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CceEEEECCEEeEEecccCCCCC----Cc-HHH
Confidence 578889999999999999999999999999999988 88999998853211122222211 00 111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
....... ............+..+++.+++ ..++++..||+||+||+++| +++||||++||+.
T Consensus 105 nl~~~~~-------~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~ 177 (264)
T PRK13546 105 NIEFKML-------CMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT 177 (264)
T ss_pred HHHHHHH-------HcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 1110000 0011112222344566777777 67788999999999999988 9999999999998
Q ss_pred HHHHHHHH---hccc-CcEEEecCCCC-hhhHHH
Q 021103 202 LCYQILHE---YKIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~---l~~~-~~~i~~shd~~-~~~~~~ 230 (317)
....+++. +... .++|++||+.. +.++++
T Consensus 178 ~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d 211 (264)
T PRK13546 178 FAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCT 211 (264)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcC
Confidence 75555444 4333 49999999954 344444
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-22 Score=171.85 Aligned_cols=160 Identities=20% Similarity=0.188 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+|||||||||++|+|..++ .+|.|.|+|.++.-..+. ...+.++.+++|
T Consensus 20 ~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~-----------~~G~I~~~G~dit~~p~~---~r~r~Gi~~VPe 85 (237)
T COG0410 20 RGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP-----------RSGRIIFDGEDITGLPPH---ERARLGIAYVPE 85 (237)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeeEEECCeecCCCCHH---HHHhCCeEeCcc
Confidence 467888889999999999999999999999999988 899999999988654321 112334444444
Q ss_pred HHhhhc---cCcEEEEEecCCCc-hhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLDASKS-EGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~~~~~-~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
-...|+ ..+++......... ......+++..+.|=- +.+++.++|||||+|.++|+ +++|||+.
T Consensus 86 gR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~ 165 (237)
T COG0410 86 GRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSE 165 (237)
T ss_pred cccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCcc
Confidence 333333 34444433222211 1111125555666543 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHh---ccc-C-cEEEecCCCChh
Q 021103 197 HVDEKLCYQILHEY---KIH-N-AEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~-~-~~i~~shd~~~~ 226 (317)
||-|..+.++.+.+ +.. + |++++.++...+
T Consensus 166 GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~A 200 (237)
T COG0410 166 GLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFA 200 (237)
T ss_pred CcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHH
Confidence 99999876665554 433 5 888888875544
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-22 Score=205.61 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=121.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...+++.|
T Consensus 496 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 560 (710)
T TIGR03796 496 ENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP-----------WSGEILFDGIPREEIPREVL----ANSVAMVDQ 560 (710)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEeHHHCCHHHH----HhheeEEec
Confidence 577889999999999999999999999999999988 89999999988754442211 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .....-..|||||+||+++|
T Consensus 561 ~~~lf~gTi~eNi~l~----~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~i 636 (710)
T TIGR03796 561 DIFLFEGTVRDNLTLW----DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSI 636 (710)
T ss_pred CChhhhccHHHHhhCC----CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 3222221 2333221 111223345555555444 22334567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||.++...+++.+...+ |+|++||+...-.. ...++|+++.-+...+..++
T Consensus 637 liLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~----------~D~Iivl~~G~i~~~G~~~~ 697 (710)
T TIGR03796 637 LILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD----------CDEIIVLERGKVVQRGTHEE 697 (710)
T ss_pred EEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh----------CCEEEEEeCCEEEEecCHHH
Confidence 99999999999999888888876544 99999999755443 34577887765554433333
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.9e-22 Score=179.84 Aligned_cols=170 Identities=13% Similarity=0.090 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.|.++|.++...+.. . .......++..|
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~v~q 98 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPG------FRVEGKVTFHGKNLYAPDVD-P-VEVRRRIGMVFQ 98 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCC------CCCceEEEECCEEccccccC-h-HHHhhhEEEEcc
Confidence 578888889999999999999999999999998652100 02689999999876321100 0 000111122122
Q ss_pred HHhhhc--cCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+.+.+...... .....+.+.++++.+++ ..++.+.+||+||+||+.|| +++|||
T Consensus 99 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 99 KPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred CCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 111110 0111111110000 11122344555666665 25678899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+ ....++|++||+.. +.++||
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d 218 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSD 218 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9999999866555544 33359999999954 444443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=196.95 Aligned_cols=147 Identities=15% Similarity=0.136 Sum_probs=106.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. .+.++.. +.. ....... .
T Consensus 336 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~~~q~~~~--~~~~~~t-~ 401 (530)
T PRK15064 336 KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEP-----------DSGTVKWSENANIGYYAQDHAY--DFENDLT-L 401 (530)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEcccccc--cCCCCCc-H
Confidence 568899999999999999999999999999999888 8899999874 3433321 100 0000000 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
.+.... ... .......+.++|+.+++ ..++++.+|||||+||+.+| +++||||++|
T Consensus 402 ~~~~~~---------~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 402 FDWMSQ---------WRQ---EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred HHHHHH---------hcc---CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 111110 000 11123457788999988 46889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 199 DEKLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 199 D~~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
|+.....+.+.+.. .+++|++|||...
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~ 497 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREF 497 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 99997777776654 3599999999653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=177.91 Aligned_cols=170 Identities=17% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+. .+..|.|.++|.++...+. .. .......++.+|
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~-~~-~~~~~~i~~v~q 92 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSG------ARLEGAVLLDNENIYSPNL-DV-VNLRKRVGMVFQ 92 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCcccc------CCcccEEEECCEEcccccc-Ch-HHhhceEEEEec
Confidence 578888899999999999999999999999999876210 0136999999876531110 00 000111222222
Q ss_pred HHhhhc--cCcEEEEEec--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... ... .....+.+...++.+++ ..++.+..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 172 (251)
T PRK14249 93 QPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMD 172 (251)
T ss_pred CCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111111 1111111110 001 11122345556666665 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+ +..+....++|++||+.. +.+++|
T Consensus 173 EPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d 214 (251)
T PRK14249 173 EPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASD 214 (251)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCC
Confidence 99999999886544 444433349999999954 344443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-22 Score=179.04 Aligned_cols=170 Identities=18% Similarity=0.124 Sum_probs=106.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. ..+.+|.|.++|.++...+ +... ......++.+|
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~------~~~~~G~i~~~g~~i~~~~-~~~~-~~~~~i~~~~q 92 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLIS------NVKIEGEVLLDGKNIYDKD-VDVV-ELRKRVGMVFQ 92 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccc------CCCCccEEEECCEeccccc-ccHH-HHHhheEEEec
Confidence 57788888999999999999999999999999875410 0015799999998763211 0000 00111111111
Q ss_pred HHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ........+.++++.+++ ..++++..||+||+||++++ +++|
T Consensus 93 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 172 (251)
T PRK14270 93 KPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMD 172 (251)
T ss_pred CCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11111 1111111111001 111223345677888876 25778999999999999988 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++++
T Consensus 173 EP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d 214 (251)
T PRK14270 173 EPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSD 214 (251)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcC
Confidence 999999999866554444 33358999999954 344443
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.7e-22 Score=184.35 Aligned_cols=150 Identities=20% Similarity=0.201 Sum_probs=109.4
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
++|-+..+.++++||||||||||||+.++|.+.| ..|.+.-.-+.. + + +..|..
T Consensus 409 l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p-----------~~G~vs~~~H~~-~----~----------~y~Qh~ 462 (614)
T KOG0927|consen 409 LNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQP-----------TIGMVSRHSHNK-L----P----------RYNQHL 462 (614)
T ss_pred hhcccCcccceeEecCCCCchhhhHHHHhhcccc-----------cccccccccccc-c----h----------hhhhhh
Confidence 3455667899999999999999999999999988 788876543221 1 1 112222
Q ss_pred hhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 135 AVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 135 ~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
..... ...+.+++.........+.++.+|.+||+ ....+..+||+|||.|+.+| +++||||||||.
T Consensus 463 ~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 463 AEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred HhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 21111 12233444444333456778999999999 46678899999999999888 899999999999
Q ss_pred HHHHHHHHHhc-ccCcEEEecCCCC-hhhHHH
Q 021103 201 KLCYQILHEYK-IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~-~~~~~i~~shd~~-~~~~~~ 230 (317)
+.+..+-+.++ ..|++|++|||.. +..+.+
T Consensus 543 ~tid~laeaiNe~~Ggvv~vSHDfrlI~qVae 574 (614)
T KOG0927|consen 543 ETIDALAEAINEFPGGVVLVSHDFRLISQVAE 574 (614)
T ss_pred hhHHHHHHHHhccCCceeeeechhhHHHHHHH
Confidence 99888888887 4579999999954 334443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-22 Score=199.38 Aligned_cols=176 Identities=15% Similarity=0.176 Sum_probs=119.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|+|.. | .+|.|.++|.++.-++...+ +...+++.|
T Consensus 367 ~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-----------~~G~I~i~g~~i~~~~~~~l----r~~i~~v~Q 430 (588)
T PRK11174 367 GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P-----------YQGSLKINGIELRELDPESW----RKHLSWVGQ 430 (588)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C-----------CCcEEEECCEecccCCHHHH----HhheEEecC
Confidence 5778999999999999999999999999999999 8 78999999988765443221 122333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ .....-..||||||||++||
T Consensus 431 ~~~LF~~TI~eNI~~g~----~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~I 506 (588)
T PRK11174 431 NPQLPHGTLRDNVLLGN----PDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQL 506 (588)
T ss_pred CCcCCCcCHHHHhhcCC----CCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3333322 33443321 11222344444444433 23344567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||.++...+.+.+. ...|+|++||+...... ...|+|+++.-+...+..++
T Consensus 507 liLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~----------aD~Iivl~~G~i~e~G~~~e 569 (588)
T PRK11174 507 LLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ----------WDQIWVMQDGQIVQQGDYAE 569 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh----------CCEEEEEeCCeEeecCCHHH
Confidence 99999999999998777766654 34599999999754332 45577887665554443333
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-22 Score=180.02 Aligned_cols=160 Identities=18% Similarity=0.112 Sum_probs=102.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT--HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~--~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|+++||+|+||||||||+++|+|. ..| .+|.+.++|.++...+..-. . .....+.
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~-~--~~~~~~~ 89 (252)
T CHL00131 24 KGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI-----------LEGDILFKGESILDLEPEER-A--HLGIFLA 89 (252)
T ss_pred ecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcC-----------CCceEEECCEEcccCChhhh-h--eeeEEEE
Confidence 577888899999999999999999999999997 345 78999999877643221000 0 0001111
Q ss_pred HHHHhhhcc---CcEEEEEe---------cCCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVL---------DASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~---------~~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.|....+.. .+.+.+.. ...........+.++|+.+++ ..++.+. .||+||+||+.+|
T Consensus 90 ~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~ 169 (252)
T CHL00131 90 FQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLD 169 (252)
T ss_pred eccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcC
Confidence 111000000 00000000 000011122456778888888 2466776 5999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---cc-cCcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KI-HNAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~-~~~~i~~shd~~~~ 226 (317)
+++||||++||+.+...+.+.+ .. ..++|++||+....
T Consensus 170 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~ 214 (252)
T CHL00131 170 SELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLL 214 (252)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 9999999999999866655544 33 34899999996644
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=202.81 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...+++.|
T Consensus 470 ~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 534 (686)
T TIGR03797 470 DDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETP-----------ESGSVFYDGQDLAGLDVQAV----RRQLGVVLQ 534 (686)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCEEEECCEEcCcCCHHHH----HhccEEEcc
Confidence 578899999999999999999999999999999988 89999999998866553222 122333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+ ...+.+.++++..++ . ....-..|||||+||+++|
T Consensus 535 ~~~lf~gTI~eNi~~~----~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~i 609 (686)
T TIGR03797 535 NGRLMSGSIFENIAGG----AP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRI 609 (686)
T ss_pred CCccCcccHHHHHhcC----CC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3322221 2333221 11 223455666666665 1 2223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||++||+++...+++.+... .|+|++||+...-+. ...|+|+++.-+...+.
T Consensus 610 LiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~----------~D~Iivl~~G~iv~~G~ 667 (686)
T TIGR03797 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN----------ADRIYVLDAGRVVQQGT 667 (686)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc----------CCEEEEEECCEEEEECC
Confidence 9999999999999988887777643 499999999654332 45678888776554433
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-22 Score=177.26 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=98.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++...+...+ ....++..+
T Consensus 18 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~v~~~g~~~~~~~~~~~----~~~i~~~~q 82 (236)
T cd03253 18 KDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDV-----------SSGSILIDGQDIREVTLDSL----RRAIGVVPQ 82 (236)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEhhhCCHHHH----HhhEEEECC
Confidence 577888889999999999999999999999999988 89999999976532211000 000111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+............ .+.+.+..+ ++ ..+.++..||+||+||++++ +++|
T Consensus 83 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllD 162 (236)
T cd03253 83 DTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLD 162 (236)
T ss_pred CChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 10001 01111111110000000000 111222222 22 24556789999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
|||++||+.....+++.+ ....++|++||+.....
T Consensus 163 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 200 (236)
T cd03253 163 EATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200 (236)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH
Confidence 999999999866555544 34338999999966543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-22 Score=180.81 Aligned_cols=180 Identities=14% Similarity=0.087 Sum_probs=112.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.+.. |.+|.|.++|.++.-...+ .......++.+|
T Consensus 38 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~---~~~~~~i~~v~q 108 (276)
T PRK14271 38 DQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY------RYSGDVLLGGRSIFNYRDV---LEFRRRVGMLFQ 108 (276)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCC------CCceEEEECCEEccccchh---HHHhhheEEecc
Confidence 5788899999999999999999999999999998641100 2589999999765321100 000011111111
Q ss_pred HHhhh--ccCcEEEEEec---CCCchhhHHHHHHHHHHcccc------ccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLD---ASKSEGHRQILTKELEAVGLR------LNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~---~~~~~~~~~~~~~~L~~~~l~------~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+... ..........+.+.++.+++. +++.+..||+||+||+.|| +++|
T Consensus 109 ~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLD 188 (276)
T PRK14271 109 RPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLD 188 (276)
T ss_pred CCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11101 00111111110 011111223455677888772 4677899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||......+++.+ ....++|++||+.. +.+++ ..+++++...+.
T Consensus 189 EPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~----------dri~~l~~G~i~ 241 (276)
T PRK14271 189 EPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARIS----------DRAALFFDGRLV 241 (276)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999866555544 33359999999965 34444 346667665443
|
|
| >PRK12297 obgE GTPase CgtA; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=177.52 Aligned_cols=170 Identities=31% Similarity=0.446 Sum_probs=125.8
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHH
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
.++..--..|||||.||||||||||+|++..+.+++|||||+.|..|.+.++ +..+.++|+||+......+.+...+++
T Consensus 152 ~lelk~~adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fL 231 (424)
T PRK12297 152 RLELKLLADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFL 231 (424)
T ss_pred EEeecccCcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHH
Confidence 3344444589999999999999999999998779999999999999999987 788999999999876666666667777
Q ss_pred hhhccCcEEEEEecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHH
Q 021103 135 AVSKSSDIVLMVLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHE 209 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~ 209 (317)
..+..++++++++|..... .+...+.+.|..+.
T Consensus 232 rhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~------------------------------------------ 269 (424)
T PRK12297 232 RHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYN------------------------------------------ 269 (424)
T ss_pred HHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhc------------------------------------------
Confidence 7788899999999985321 11111222221110
Q ss_pred hcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhcC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 210 YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 210 l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.....+|.++|+||+|+.... .++.+.+. ..++++||+++.|+++|.+.|.+.
T Consensus 270 ------------------------~~L~~kP~IVV~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~ 325 (424)
T PRK12297 270 ------------------------PRLLERPQIVVANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAEL 325 (424)
T ss_pred ------------------------hhccCCcEEEEEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHH
Confidence 001247999999999985432 23333322 468899999999999999999888
Q ss_pred hCeeE
Q 021103 287 MGLVR 291 (317)
Q Consensus 287 l~~~~ 291 (317)
+...+
T Consensus 326 l~~~~ 330 (424)
T PRK12297 326 LEETP 330 (424)
T ss_pred HHhCc
Confidence 75543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-22 Score=178.24 Aligned_cols=170 Identities=18% Similarity=0.106 Sum_probs=105.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.+.++|.++.....+. ......++.+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~v~~~g~~~~~~~~~~---~~~~~i~~~~ 89 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEG------VKITGKLTMDGEDIYGNIDVA---DLRIKVGMVF 89 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccC------CCCceEEEECCEEcccccchH---HHHhheeEEe
Confidence 3678888999999999999999999999999999764100 025899999997653100000 0011111111
Q ss_pred HHHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+ ...+++.+..... ......+.+.+.++.+++ ..+.++..||+||+||+.|| +++
T Consensus 90 q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 169 (249)
T PRK14253 90 QKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILM 169 (249)
T ss_pred cCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 111111 1111111111101 111122345566777765 34678899999999999998 899
Q ss_pred cCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCCh-hhHHH
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~-~~~~~ 230 (317)
||||++||+.....+ +..+....++|++||+... .+.+|
T Consensus 170 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d 212 (249)
T PRK14253 170 DEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISD 212 (249)
T ss_pred eCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCC
Confidence 999999999986554 4444334599999999553 44443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-22 Score=200.32 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=119.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-++...+ ....++..|
T Consensus 360 ~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~Q 424 (582)
T PRK11176 360 RNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI-----------DEGEILLDGHDLRDYTLASL----RNQVALVSQ 424 (582)
T ss_pred cCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCceEEECCEEhhhcCHHHH----HhhceEEcc
Confidence 578899999999999999999999999999999988 89999999988754432211 111222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ....+.+.+.+.++..++ .....-..|||||+||+++|
T Consensus 425 ~~~lf~~Ti~~Ni~~~~---~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~i 501 (582)
T PRK11176 425 NVHLFNDTIANNIAYAR---TEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_pred CceeecchHHHHHhcCC---CCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCE
Confidence 2222211 22222211 111233455566666554 12223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||+++...+.+.+.. ..|+|++||+....+.+ ..|+++++..+...+..+.
T Consensus 502 lilDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~----------D~Ii~l~~g~i~e~g~~~~ 564 (582)
T PRK11176 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKA----------DEILVVEDGEIVERGTHAE 564 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC----------CEEEEEECCEEEEeCCHHH
Confidence 999999999999987777666653 35999999997654433 4577787765554433333
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=178.23 Aligned_cols=165 Identities=21% Similarity=0.112 Sum_probs=106.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|.. .+++|.|.++|.++...+. .....++.+|
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~-------~~~~G~i~~~g~~i~~~~~------~~~~i~~v~q 86 (254)
T PRK10418 20 HGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGV-------RQTAGRVLLDGKPVAPCAL------RGRKIATIMQ 86 (254)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-------CCcCCEEEECCeecccccc------ccceEEEEec
Confidence 57889999999999999999999999999999976410 1257999999877531110 0011111111
Q ss_pred HHh-hhcc-C---cEEEEEecCCCchhhHHHHHHHHHHccc-c----ccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIA-VSKS-S---DIVLMVLDASKSEGHRQILTKELEAVGL-R----LNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~-~~~~-~---d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~----~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
... .+.. . +.+.............+.+.++++.+++ . .++.+..||+||+||+.|| +++||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDE 166 (254)
T PRK10418 87 NPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADE 166 (254)
T ss_pred CCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 100 0000 0 0000000000111223567788999998 2 4788999999999999998 99999
Q ss_pred CCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHH
Q 021103 194 PLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 194 Pt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
||++||+.....+ ++.+.. ..++|++||+... .+++|
T Consensus 167 Pt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d 209 (254)
T PRK10418 167 PTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLAD 209 (254)
T ss_pred CCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCC
Confidence 9999999886555 444433 2389999999553 34443
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-22 Score=167.88 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=88.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||+|||||+++|+|...| .+|.+.++|.++...+. ..
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-----------~~G~v~~~g~~~~~~~~--------------~~ 71 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKP-----------DSGEILVDGKEVSFASP--------------RD 71 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCcCCH--------------HH
Confidence 577888999999999999999999999999999988 89999998875422100 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. .+. .+.++ .+||+||+||+++| +++||||++||+...
T Consensus 72 ~---~~~--~i~~~----------------------------~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~ 118 (163)
T cd03216 72 A---RRA--GIAMV----------------------------YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEV 118 (163)
T ss_pred H---Hhc--CeEEE----------------------------EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 0 000 01111 12999999999988 899999999999986
Q ss_pred HHHHHHh---cc-cCcEEEecCCCC-hhhHHH
Q 021103 204 YQILHEY---KI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 204 ~~~l~~l---~~-~~~~i~~shd~~-~~~~~~ 230 (317)
..+.+.+ .. ..++|++||+.. +.+.++
T Consensus 119 ~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 150 (163)
T cd03216 119 ERLFKVIRRLRAQGVAVIFISHRLDEVFEIAD 150 (163)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 6555544 33 348999999955 455444
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-22 Score=198.94 Aligned_cols=164 Identities=16% Similarity=0.162 Sum_probs=110.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+.+|+++||+|+|||||||||++|+|...| ++|.|.++|.. +..+...... .....+.
T Consensus 20 ~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p-----------~~G~I~~~~~~~~~~l~q~~~~----~~~~~v~ 84 (635)
T PRK11147 20 DNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL-----------DDGRIIYEQDLIVARLQQDPPR----NVEGTVY 84 (635)
T ss_pred eCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEeCCCCEEEEeccCCCC----CCCCCHH
Confidence 578899999999999999999999999999999888 88999987632 2222211000 0011111
Q ss_pred HHH-----------hhhcc----------CcEEEEE------ecCCCchhhHHHHHHHHHHccccccccCCcccccceee
Q 021103 132 QVI-----------AVSKS----------SDIVLMV------LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKT 184 (317)
Q Consensus 132 ~~~-----------~~~~~----------~d~i~~v------~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr 184 (317)
+.. ..+.. .+++... ...........++.++|+.+|+..++++..|||||+||
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGekqR 164 (635)
T PRK11147 85 DFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRK 164 (635)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHHHH
Confidence 110 00000 0000000 00000111234678889999996688999999999999
Q ss_pred eeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 185 GGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 185 ~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
+.|| +++||||++||+.....+.+.+.. .+++|++|||.. ++.+|+.
T Consensus 165 v~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~ 222 (635)
T PRK11147 165 AALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATR 222 (635)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCe
Confidence 9998 999999999999998777666653 359999999955 4455554
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-22 Score=177.68 Aligned_cols=181 Identities=18% Similarity=0.097 Sum_probs=112.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+..+ .+.+|.|.++|.++...+.+ . .......++.+|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~q 94 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG------CRITGDILYNGENIMDSGAD-V-VALRRKIGMVFQ 94 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCC------CCcceEEEECCEEccccccc-h-hhhhceEEEEec
Confidence 578899999999999999999999999999998643100 01379999999876432110 0 000111222222
Q ss_pred HHhhhc--cCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.... .........+.++++.+++ ..++.+..||+||+||+.++ +++|
T Consensus 95 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 95 RPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred CCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 111110 01111111110 0111223345667777765 35788999999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+ ....++|++||+.. +.+.+| .++++++..+.
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d----------~v~~l~~G~i~ 227 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSD----------YTGFMYLGKLI 227 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCC----------EEEEEECCEEE
Confidence 999999999866554444 33359999999954 334443 45666655443
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=180.07 Aligned_cols=180 Identities=17% Similarity=0.094 Sum_probs=109.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+|+||||||||+++|+|...+.. ..|.+|.|.++|.++...+... .......++.+|
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~~~g~~~~~~~~~~--~~~~~~i~~v~q 112 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP------SVKTTGKILYRDQNIFDKSYSV--EELRTNVGMVFQ 112 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCC------CCCCceeEEECCEEcccccccH--HHHhhhEEEEec
Confidence 57888999999999999999999999999999975100 0127899999997753211000 000011111111
Q ss_pred HHhhh--ccCcEEEEEe---cCCCchhhHHHHHHHHHHcc----c--cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVL---DASKSEGHRQILTKELEAVG----L--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~---~~~~~~~~~~~~~~~L~~~~----l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+.+.+.. ...........+.+.++.++ + ..++++..||+||+||+.++ +++|
T Consensus 113 ~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLD 192 (271)
T PRK14238 113 KPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMD 192 (271)
T ss_pred CCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 11000 0011111110 00111111233455566653 3 45778999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+... .+++| .+++++..-+
T Consensus 193 EPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d----------~i~~l~~G~i 244 (271)
T PRK14238 193 EPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISD----------KTAFFLNGYV 244 (271)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCC----------EEEEEECCEE
Confidence 999999999866655544 333589999999653 44443 3556665544
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-22 Score=174.85 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+..... ....++.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-----------~~G~i~~~g~~~~~~~~~~~~---~~~i~~~ 83 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLELSPEDRA---GEGIFMA 83 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCC-----------CceEEEECCCccccCCHHHHh---hcceEEE
Confidence 5778888899999999999999999999999995 46 789999998765322110000 0001111
Q ss_pred HHHHhhhcc----------CcEEEEEec--CCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS----------SDIVLMVLD--ASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~----------~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
.+....+.. .+.+..... ..........+.+.++.+++ ..++.+. .||+||+||+.+|
T Consensus 84 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~ 163 (248)
T PRK09580 84 FQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 163 (248)
T ss_pred ecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcC
Confidence 110000000 000000000 00111123456677788777 2445554 7999999999988
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+ .+... .++|++|||....
T Consensus 164 p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 164 PELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 99999999999998666655 44433 4999999996543
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-22 Score=195.88 Aligned_cols=168 Identities=20% Similarity=0.191 Sum_probs=106.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCe---------------------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDT--------------------- 109 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~--------------------- 109 (317)
.++++.+..|++++|+|+||||||||+++|+|.. .| .+|.|.+++.
T Consensus 17 ~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-----------~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~ 85 (520)
T TIGR03269 17 KNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-----------TSGRIIYHVALCEKCGYVERPSKVGEPCPVC 85 (520)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCC-----------CceEEEEeccccccccccccccccccccccc
Confidence 5788999999999999999999999999999996 46 7899988631
Q ss_pred --eEEE--ecCCCccc----cccCCchhHHHH-Hhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--ccccc
Q 021103 110 --KIQL--LDLPGIIE----GASEGKGRGRQV-IAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKR 173 (317)
Q Consensus 110 --~i~~--~d~~g~~~----~~~~~~~~~~~~-~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~ 173 (317)
++.. .+...... ..+...++.+|. ...+. ..+.+.+... .........++.++|+.+++ ..+++
T Consensus 86 g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 165 (520)
T TIGR03269 86 GGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHI 165 (520)
T ss_pred cccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcC
Confidence 1100 00000000 000111111111 00111 0111111110 01111223467788999999 56788
Q ss_pred CCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH---HHHhcc--cCcEEEecCCCCh-hhHHHH
Q 021103 174 PPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI---LHEYKI--HNAEVLFREDATV-DDLIDV 231 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~---l~~l~~--~~~~i~~shd~~~-~~~~~~ 231 (317)
+.+|||||+||+.|| +++||||++||+.....+ +..+.. ..++|++|||... .++||+
T Consensus 166 ~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 166 ARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 999999999999998 999999999999986665 444432 2489999999654 455554
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-22 Score=178.73 Aligned_cols=170 Identities=19% Similarity=0.137 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+. |. .+.+|+|.++|.++...+.+ . ...+...++..|
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~---~~---~~~~G~i~~~g~~~~~~~~~-~-~~~~~~i~~~~q 91 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLI---PS---VKIEGEVLLDGQDIYKSDID-V-NQLRKRVGMVFQ 91 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc---CC---CCCceEEEECCEEccccccc-h-HHHhccEEEEec
Confidence 5788899999999999999999999999999986420 00 01579999999875321000 0 000111111111
Q ss_pred HHhhh--ccCcEEEEEe--cC-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVL--DA-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~--~~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.. .. .......+.+.+.++.+++ ..++++..||+||+||+++| +++|
T Consensus 92 ~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 171 (250)
T PRK14240 92 QPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11100 0111111111 00 0111223456667777765 24778899999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.. +.++++
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d 213 (250)
T PRK14240 172 EPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISD 213 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCC
Confidence 999999999866554444 33349999999965 344443
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.9e-22 Score=178.70 Aligned_cols=170 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++.+.. +..|.+.++|.++.....+ . .......++.++
T Consensus 24 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i------~~~G~i~~~g~~i~~~~~~-~-~~~~~~i~~~~q 95 (261)
T PRK14258 24 EGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEV------RVEGRVEFFNQNIYERRVN-L-NRLRRQVSMVHP 95 (261)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCc------cccceEEECCEEhhccccc-h-HHhhccEEEEec
Confidence 5788999999999999999999999999999998762111 1368898988765311000 0 000011111111
Q ss_pred HHhhhc--cCcEEEEEe--cCCCch-hhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVL--DASKSE-GHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~~~~-~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+.+.+.. ...... .....+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 96 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLD 175 (261)
T PRK14258 96 KPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMD 175 (261)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 100000 011111100 000111 123456677888876 25778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+. . ..++|++||+.. +.+++|
T Consensus 176 EP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d 219 (261)
T PRK14258 176 EPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSD 219 (261)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcC
Confidence 9999999998665555443 2 349999999954 344443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-22 Score=197.14 Aligned_cols=153 Identities=18% Similarity=0.173 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCC--CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLP--GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~--g~~~~~~~~~~~ 129 (317)
.++++.+..|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++... .+.. .. .
T Consensus 339 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----~~-t 402 (552)
T TIGR03719 339 DDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP-----------DSGTIKIGETVKLAYVDQSRDALDP----NK-T 402 (552)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CCeEEEECCceEEEEEeCCccccCC----CC-c
Confidence 568899999999999999999999999999999888 8899998542 23333211 0110 00 0
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
+.+.+. +...............++|+.+++ ..++++..|||||+||+.+| +++||||++
T Consensus 403 v~e~l~---------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~ 473 (552)
T TIGR03719 403 VWEEIS---------GGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTND 473 (552)
T ss_pred HHHHHH---------hhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Confidence 111111 000000000111235578899998 25788999999999999998 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEecCCCCh-hhHHH
Q 021103 198 VDEKLCYQILHEYKI-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~~-~~~~i~~shd~~~-~~~~~ 230 (317)
||+.....+.+.+.. .+++|++|||... ..+++
T Consensus 474 LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d 508 (552)
T TIGR03719 474 LDVETLRALEEALLEFAGCAVVISHDRWFLDRIAT 508 (552)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCC
Confidence 999998777776654 3589999999553 34443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.2e-22 Score=195.82 Aligned_cols=153 Identities=18% Similarity=0.179 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCC--CccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLP--GIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~--g~~~~~~~~~~~ 129 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++. .+.++... .+.. .. .
T Consensus 341 ~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~q~~~~~~~----~~-t 404 (556)
T PRK11819 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP-----------DSGTIKIGETVKLAYVDQSRDALDP----NK-T 404 (556)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCceEEEEEeCchhhcCC----CC-C
Confidence 578899999999999999999999999999999988 8899998542 23333211 0100 00 0
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
+.+.+.. ................+|+.+++ ..++++.+|||||+||+.+| +++||||++
T Consensus 405 v~e~l~~---------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~ 475 (556)
T PRK11819 405 VWEEISG---------GLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTND 475 (556)
T ss_pred HHHHHHh---------hcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 1111110 00000000112234568999998 25889999999999999988 999999999
Q ss_pred CCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHH
Q 021103 198 VDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 198 LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~ 230 (317)
||+.....+.+.+.. .+++|++|||.. +..+||
T Consensus 476 LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d 510 (556)
T PRK11819 476 LDVETLRALEEALLEFPGCAVVISHDRWFLDRIAT 510 (556)
T ss_pred CCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCC
Confidence 999997777776654 358999999954 444444
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-21 Score=191.96 Aligned_cols=143 Identities=14% Similarity=0.148 Sum_probs=100.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-Cc-hhHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GK-GRGR 131 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~-~~~~ 131 (317)
++++.+..|++++|+|+||||||||+++|+|...| .+|.|.++ ..+.++. +... .. ..+.
T Consensus 357 ~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-----------~~G~I~~~-~~i~y~~------Q~~~~~~~~tv~ 418 (590)
T PRK13409 357 VEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKP-----------DEGEVDPE-LKISYKP------QYIKPDYDGTVE 418 (590)
T ss_pred ecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEEe-eeEEEec------ccccCCCCCcHH
Confidence 45566788999999999999999999999999988 88999875 3333221 1110 00 0011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+.+.. ...... ....+.++|+.+++ ..++++.+|||||+||++|| +++||||++||+
T Consensus 419 e~l~~---------~~~~~~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~ 486 (590)
T PRK13409 419 DLLRS---------ITDDLG---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV 486 (590)
T ss_pred HHHHH---------HhhhcC---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 11110 000111 12245778999999 67899999999999999998 999999999999
Q ss_pred HHHHHHHHHhc---c--cCcEEEecCCCChh
Q 021103 201 KLCYQILHEYK---I--HNAEVLFREDATVD 226 (317)
Q Consensus 201 ~~~~~~l~~l~---~--~~~~i~~shd~~~~ 226 (317)
.....+.+.+. . ..++|++|||....
T Consensus 487 ~~~~~l~~~l~~l~~~~g~tviivsHD~~~~ 517 (590)
T PRK13409 487 EQRLAVAKAIRRIAEEREATALVVDHDIYMI 517 (590)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 98665555443 3 34999999996543
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-22 Score=212.43 Aligned_cols=174 Identities=17% Similarity=0.212 Sum_probs=118.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.+.++|.++.. +. ...+...++..|
T Consensus 947 ~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-----------tsG~I~i~G~dI~~-~~----~~~r~~IG~~pQ 1010 (2272)
T TIGR01257 947 DRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPP-----------TSGTVLVGGKDIET-NL----DAVRQSLGMCPQ 1010 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCC-----------CceEEEECCEECcc-hH----HHHhhcEEEEec
Confidence 578889999999999999999999999999999988 89999999987631 10 001111222222
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+... ........+.+.++|+.+++ ..++++.+||||||||+.+| +++||||+
T Consensus 1011 ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTS 1090 (2272)
T TIGR01257 1011 HNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTS 1090 (2272)
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 111111 1111111111 11112234567889999999 67889999999999999988 99999999
Q ss_pred CCCHHHHHHH---HHHhcccCcEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQI---LHEYKIHNAEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+...+.+ ++.++.+.++|++||+.+.. .++| .++++++.-+..
T Consensus 1091 GLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laD----------rI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1091 GVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGD----------RIAIISQGRLYC 1140 (2272)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC----------EEEEEECCEEEE
Confidence 9999986555 44444434999999996544 3443 456666655543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-21 Score=162.96 Aligned_cols=126 Identities=14% Similarity=0.075 Sum_probs=91.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.+++. .+.++.
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~~~~~i~~~~---------------- 70 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPW-----------GSGRIGMPEGEDLLFLP---------------- 70 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCCceEEEEC----------------
Confidence 578889999999999999999999999999999888 8899998763 222221
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
|. .. + ... .+.+.+... .+..||+||+||+++| +++||||++||+..
T Consensus 71 q~------~~--~---~~~-------tv~~nl~~~------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~ 126 (166)
T cd03223 71 QR------PY--L---PLG-------TLREQLIYP------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126 (166)
T ss_pred CC------Cc--c---ccc-------cHHHHhhcc------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHH
Confidence 10 00 0 000 011111100 4678999999999998 99999999999998
Q ss_pred HHHHHHHhccc-CcEEEecCCCChhhHH
Q 021103 203 CYQILHEYKIH-NAEVLFREDATVDDLI 229 (317)
Q Consensus 203 ~~~~l~~l~~~-~~~i~~shd~~~~~~~ 229 (317)
...+.+.+... .++|++||+.+....+
T Consensus 127 ~~~l~~~l~~~~~tiiivsh~~~~~~~~ 154 (166)
T cd03223 127 EDRLYQLLKELGITVISVGHRPSLWKFH 154 (166)
T ss_pred HHHHHHHHHHhCCEEEEEeCChhHHhhC
Confidence 77776666543 4899999997654433
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=183.79 Aligned_cols=174 Identities=21% Similarity=0.215 Sum_probs=121.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++|||+|++|||||||++.|+|...| .+|+|.++|.++..++...+++ ......|
T Consensus 355 ~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~-----------~~G~i~~~g~~~~~l~~~~~~e----~i~vl~Q 419 (573)
T COG4987 355 KNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDP-----------QQGSITLNGVEIASLDEQALRE----TISVLTQ 419 (573)
T ss_pred hccceeecCCCeEEEECCCCCCHHHHHHHHHhccCC-----------CCCeeeECCcChhhCChhhHHH----HHhhhcc
Confidence 688899999999999999999999999999999988 9999999998876655321211 1111112
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
-...+.. .|++.+ .++....+.+.+.|+.+|+ .++.--..|||||+||+++|
T Consensus 420 r~hlF~~Tlr~NL~l----A~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl 495 (573)
T COG4987 420 RVHLFSGTLRDNLRL----ANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPL 495 (573)
T ss_pred chHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCe
Confidence 1111111 122211 1222333456667777766 22334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||.|||+.+-+++++.+- ...|++++||+....+. .+.|+|++-.-++....
T Consensus 496 ~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~----------~drIivl~~Gkiie~G~ 555 (573)
T COG4987 496 WLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER----------MDRIIVLDNGKIIEEGT 555 (573)
T ss_pred EEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhh----------cCEEEEEECCeeeecCC
Confidence 89999999999999888888774 34599999999665554 35577777665554433
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-22 Score=178.62 Aligned_cols=180 Identities=16% Similarity=0.077 Sum_probs=111.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... -|.+|.|.++|.++...+.+ . .......++..|
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~------~~~~G~i~i~g~~i~~~~~~-~-~~~~~~i~~v~q 113 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDN------CRIEGEIRLDGQNIYDKKVD-V-AELRRRVGMVFQ 113 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccC------CCCceEEEECCEECcccccC-H-HHHhccEEEEec
Confidence 578889999999999999999999999999999752000 02689999999875321100 0 000111111111
Q ss_pred HHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+... .. ........+.++++.+++ ..++.+..||+||+||+++| +++|
T Consensus 114 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 114 RPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred CCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 111111 0111111110 00 111123346667777776 25678899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+.+.+ ....++|++||+... .+.+| .+++++...+
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d----------~i~~l~~G~i 245 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD----------YTAFMYMGKL 245 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCC----------EEEEEECCEE
Confidence 999999999865554444 343589999999653 44443 3566665544
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-22 Score=196.09 Aligned_cols=176 Identities=22% Similarity=0.233 Sum_probs=121.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 357 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 421 (574)
T PRK11160 357 KGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP-----------QQGEILLNGQPIADYSEAAL----RQAISVVSQ 421 (574)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhheeEEcc
Confidence 577899999999999999999999999999999988 89999999988765442211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--ccc----------ccCCcccccceeeeeeE---------e
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLN----------KRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~----------~~~~~LS~g~~qr~~ia---------l 189 (317)
....+.. .+++.+.. +....+.+.+.++.+++ ... .....|||||+||+++| +
T Consensus 422 ~~~lf~~ti~~Ni~~~~----~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~il 497 (574)
T PRK11160 422 RVHLFSATLRDNLLLAA----PNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLL 497 (574)
T ss_pred cchhhcccHHHHhhcCC----CccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 2222221 22222211 12234456777777777 222 24567999999999999 8
Q ss_pred eecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
++||||++||+++...+.+.+. ...++|++||+...... ...++++++..+...+..+
T Consensus 498 ilDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~----------~d~i~~l~~G~i~~~g~~~ 558 (574)
T PRK11160 498 LLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ----------FDRICVMDNGQIIEQGTHQ 558 (574)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh----------CCEEEEEeCCeEEEeCCHH
Confidence 9999999999998776666654 34599999999654332 3457788776655443333
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-22 Score=170.03 Aligned_cols=132 Identities=16% Similarity=0.152 Sum_probs=87.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.. . ..
T Consensus 17 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~-~-----------~~ 73 (178)
T cd03229 17 NDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-----------DSGSILIDGEDLTDLEDE-L-----------PP 73 (178)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEEccccchh-H-----------HH
Confidence 567888899999999999999999999999999887 899999998765321100 0 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. . ..+.++....... ....+.+.+.. .||+||+||+.++ +++||||++||+...
T Consensus 74 ~----~--~~i~~~~q~~~~~-~~~t~~~~l~~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~ 136 (178)
T cd03229 74 L----R--RRIGMVFQDFALF-PHLTVLENIAL----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITR 136 (178)
T ss_pred H----h--hcEEEEecCCccC-CCCCHHHheee----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHH
Confidence 0 0 0111111100000 00001111100 1999999999988 999999999999986
Q ss_pred HHHHH---Hhccc--CcEEEecCCCC
Q 021103 204 YQILH---EYKIH--NAEVLFREDAT 224 (317)
Q Consensus 204 ~~~l~---~l~~~--~~~i~~shd~~ 224 (317)
..+.+ .+... .+++++||+..
T Consensus 137 ~~l~~~l~~~~~~~~~tiii~sH~~~ 162 (178)
T cd03229 137 REVRALLKSLQAQLGITVVLVTHDLD 162 (178)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 55544 44443 48999999954
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-22 Score=175.23 Aligned_cols=155 Identities=14% Similarity=0.049 Sum_probs=101.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.|.++|.++...+... .....++..
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~~~ 84 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVEL-----------SSGSILIDGVDISKIGLHD----LRSRISIIP 84 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhHhCCHHH----HhhhEEEEC
Confidence 3678899999999999999999999999999999888 8899999987653211000 001111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+. ..+++.+... . ....+.+.++.+++ ..+..+..||+||+||++++
T Consensus 85 q~~~l~~~tv~enl~~~~~-~----~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 85 QDPVLFSGTIRSNLDPFGE-Y----SDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred CCCccccchHHHHhCcCCC-C----CHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 1111110 0111111100 0 12234444555554 12467899999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVD 226 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+.+. ...++|++||+....
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 89999999999998666555554 334899999996543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-22 Score=195.34 Aligned_cols=167 Identities=14% Similarity=0.079 Sum_probs=108.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|. .+.++.. +.+..... .....
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~~i~~~~q~~~~~~~~t-v~e~l 85 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEP-----------SAGNVSLDPNERLGKLRQDQFAFEEFT-VLDTV 85 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCcCCCCc-HHHHH
Confidence 678899999999999999999999999999999887 7899998763 3433221 11111000 00000
Q ss_pred H----HHHh------h-hccCcEEEEE----------ecCCCchhhHHHHHHHHHHcccc--c-cccCCcccccceeeee
Q 021103 131 R----QVIA------V-SKSSDIVLMV----------LDASKSEGHRQILTKELEAVGLR--L-NKRPPQIYFKKKKTGG 186 (317)
Q Consensus 131 ~----~~~~------~-~~~~d~i~~v----------~~~~~~~~~~~~~~~~L~~~~l~--~-~~~~~~LS~g~~qr~~ 186 (317)
. .... . ....+..... ...........++.++|+.+++. . ++++.+|||||+||+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~ 165 (530)
T PRK15064 86 IMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVL 165 (530)
T ss_pred HHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHH
Confidence 0 0000 0 0000000000 00000011234577889999982 3 4678999999999999
Q ss_pred eE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 187 IS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 187 ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
+| +++||||++||+.....+.+.+... .++|++|||.. +.++||+
T Consensus 166 lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~ 221 (530)
T PRK15064 166 LAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTH 221 (530)
T ss_pred HHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcce
Confidence 98 9999999999999988888877654 49999999955 4555554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-22 Score=177.78 Aligned_cols=170 Identities=17% Similarity=0.127 Sum_probs=105.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|...+.. ..+.+|.|.++|.++...+. .. .......++..|
T Consensus 20 ~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~------~~~~~G~i~i~g~~~~~~~~-~~-~~~~~~i~~~~q 91 (250)
T PRK14262 20 KNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIP------GFRVEGKIYFKGQDIYDPQL-DV-TEYRKKVGMVFQ 91 (250)
T ss_pred eeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCC------CCCcceEEEECCEEcccchh-hH-HHhhhhEEEEec
Confidence 57888889999999999999999999999999875310 00167999999976532110 00 000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.++++.+++ ..++++..||+||+||+.+| +++|
T Consensus 92 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllD 171 (250)
T PRK14262 92 KPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLD 171 (250)
T ss_pred CCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 11000 111111111110 0111122345667777776 25778899999999999988 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.+...+.+.+ ....++|++||+.+ +.+++|
T Consensus 172 EP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d 213 (250)
T PRK14262 172 EPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIAD 213 (250)
T ss_pred CCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCC
Confidence 999999999865554444 33359999999965 444444
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-22 Score=178.06 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=105.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+.. | ...+|.|.++|.++...+.. ........++..|
T Consensus 24 ~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~--~----~~~~G~i~~~g~~i~~~~~~--~~~~~~~i~~v~q 95 (259)
T PRK14260 24 EGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEG--P----VKVEGVVDFFGQNIYDPRIN--INRLRRQIGMVFQ 95 (259)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCccc--C----CccceEEEECCEeccccccc--hHhhhhheEEEec
Confidence 57889999999999999999999999999999876410 0 00379999999765321100 0000011111111
Q ss_pred HHhhh--ccCcEEEEEecC---CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+.... .........+.+.++.+++ ..++++..||+||+||+.+| +++|
T Consensus 96 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 175 (259)
T PRK14260 96 RPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMD 175 (259)
T ss_pred ccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11100 001111110000 0111223456677777775 35678899999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC-hhhHHH
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~-~~~~~~ 230 (317)
|||++||+.....+.+.+ ....++|++||+.+ +.+++|
T Consensus 176 EPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d 217 (259)
T PRK14260 176 EPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD 217 (259)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcC
Confidence 999999998865555544 33359999999954 344444
|
|
| >TIGR00436 era GTP-binding protein Era | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-20 Score=167.99 Aligned_cols=155 Identities=26% Similarity=0.255 Sum_probs=113.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d 141 (317)
+|+|+|+||||||||+|+|+|... .++++|+||++...|....++.++.++||||+....... ..+.......+..+|
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aD 81 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVD 81 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCC
Confidence 799999999999999999999875 489999999999999888778889999999986542211 111223445667899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+.........+...+.
T Consensus 82 vvl~VvD~~~~~~~~~~i~~~l~--------------------------------------------------------- 104 (270)
T TIGR00436 82 LILFVVDSDQWNGDGEFVLTKLQ--------------------------------------------------------- 104 (270)
T ss_pred EEEEEEECCCCCchHHHHHHHHH---------------------------------------------------------
Confidence 99999998653221111111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HH---hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KL---ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l---~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
....|+++|+||+|+...+... .+ ..+..++++||.+|.|+++|.+.|.+.++.
T Consensus 105 --------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~ 165 (270)
T TIGR00436 105 --------------NLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLPE 165 (270)
T ss_pred --------------hcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCC
Confidence 0147999999999998544322 12 123468999999999999999999998753
|
Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-22 Score=198.20 Aligned_cols=176 Identities=18% Similarity=0.165 Sum_probs=119.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..+|...+ +...++..|
T Consensus 358 ~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----~~~i~~v~Q 422 (592)
T PRK10790 358 QNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL-----------TEGEIRLDGRPLSSLSHSVL----RQGVAMVQQ 422 (592)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCceEEECCEEhhhCCHHHH----HhheEEEcc
Confidence 578899999999999999999999999999999988 89999999988765442221 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ....+.+.++++.+++ .....-..|||||+||+++|
T Consensus 423 ~~~lF~~Ti~~NI~~~~-----~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 423 DPVVLADTFLANVTLGR-----DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred CCccccchHHHHHHhCC-----CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2222221 22222211 1123345666666665 12233467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
+++||||++||+++...+.+.+. ...++|++||+...-.. ...++++++..+...+..++
T Consensus 498 lllDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~----------~D~ii~l~~G~i~~~G~~~~ 560 (592)
T PRK10790 498 LILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE----------ADTILVLHRGQAVEQGTHQQ 560 (592)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh----------CCEEEEEECCEEEEEcCHHH
Confidence 99999999999998777666654 34599999999755443 34577887776654443333
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-22 Score=182.63 Aligned_cols=189 Identities=15% Similarity=0.100 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...+..+ .|.+|.|.++|.++...+ .+.. ..+...++.+|
T Consensus 99 ~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~------~p~~G~I~idG~~i~~~~-~~~~-~lr~~i~~v~q 170 (329)
T PRK14257 99 HDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEG------TSHEGEIYFLGTNTRSKK-ISSL-ELRTRIGMVFQ 170 (329)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccc-cchH-hhhccEEEEec
Confidence 678899999999999999999999999999999753100 026899999998763211 0000 01111222222
Q ss_pred HHhhhc--cCcEEEEEe--cCCCchh-hHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSK--SSDIVLMVL--DASKSEG-HRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~--~~~~~~~-~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+. ..+++.+.. +...... ....+...++.+++ ..+.+...|||||+||++|| +++|
T Consensus 171 ~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLD 250 (329)
T PRK14257 171 KPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250 (329)
T ss_pred CCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence 211111 112222111 1111111 11234566777765 35788999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhcccCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
|||++||+.....+ +..+....|+|++||+... .+++ ..++|++..-+......+.+
T Consensus 251 EPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~----------Driivl~~G~i~e~g~~~~l 311 (329)
T PRK14257 251 EPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS----------DETVFFYQGWIEEAGETKTI 311 (329)
T ss_pred CCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEEeCCHHHH
Confidence 99999999885544 4444444599999999553 3434 45777877665544444443
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-22 Score=169.15 Aligned_cols=128 Identities=13% Similarity=0.097 Sum_probs=87.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+.++|+|+||||||||+++|+|..+| .+|.+.++|.++.... ......
T Consensus 17 ~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~-----~~~~~~------ 74 (173)
T cd03230 17 DDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKP-----------DSGEIKVLGKDIKKEP-----EEVKRR------ 74 (173)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEcccch-----Hhhhcc------
Confidence 578888999999999999999999999999999887 8999999997653110 000001
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
+.++....... ....+.+.+. ||+||+||+.+| +++||||++||+...
T Consensus 75 ----------i~~~~q~~~~~-~~~tv~~~~~------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 131 (173)
T cd03230 75 ----------IGYLPEEPSLY-ENLTVRENLK------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131 (173)
T ss_pred ----------EEEEecCCccc-cCCcHHHHhh------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 11111100000 0001111110 999999999988 999999999999986
Q ss_pred HHHHHHhc---cc-CcEEEecCCCCh
Q 021103 204 YQILHEYK---IH-NAEVLFREDATV 225 (317)
Q Consensus 204 ~~~l~~l~---~~-~~~i~~shd~~~ 225 (317)
..+++.+. .. .++|++||+...
T Consensus 132 ~~l~~~l~~~~~~g~tiii~th~~~~ 157 (173)
T cd03230 132 REFWELLRELKKEGKTILLSSHILEE 157 (173)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCHHH
Confidence 65555443 33 489999999653
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-22 Score=176.05 Aligned_cols=168 Identities=20% Similarity=0.158 Sum_probs=103.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE-ecCCCccc-cccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL-LDLPGIIE-GASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~-~d~~g~~~-~~~~~~~~ 129 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.-... .+...+.. ......++
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~-----------~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~ 94 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEI-----------YDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGM 94 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CcCceeEcCEEEECCcccccCCHHHHhcceEE
Confidence 3678889999999999999999999999999999887 66666555432100 01000000 00111111
Q ss_pred HHHHHhhhcc---CcEEEEEec--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKS---SDIVLMVLD--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
..+....+.. .+++.+... ... .......+.++++.+++ ..+..+..||+||+||+.++
T Consensus 95 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~l 174 (257)
T PRK14246 95 VFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKV 174 (257)
T ss_pred EccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 1111111111 111111111 011 11223456778888887 24678899999999999998
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCChh-hHHH
Q 021103 189 FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVD-DLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~-~~~~ 230 (317)
+++||||++||......+ +..+....++|++||+.... ++|+
T Consensus 175 lllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d 220 (257)
T PRK14246 175 LLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVAD 220 (257)
T ss_pred EEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCC
Confidence 999999999999985544 44444445999999995533 4444
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.85 E-value=3e-22 Score=180.26 Aligned_cols=175 Identities=19% Similarity=0.115 Sum_probs=114.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||+|||||+++|+|... .+|.|.++|.++..++...+ +...++.+
T Consensus 20 l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~------------~~G~I~i~g~~i~~~~~~~l----r~~i~~v~ 83 (275)
T cd03289 20 LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGDIQIDGVSWNSVPLQKW----RKAFGVIP 83 (275)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEhhhCCHHHH----hhhEEEEC
Confidence 368889999999999999999999999999999974 46999999987643211100 11111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc-----------ccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~-----------LS~g~~qr~~ia-------- 188 (317)
|....+. ..+++.. ... ...+.+.+.++.+++ ..++.+.. ||+||+||+++|
T Consensus 84 q~~~lf~~tv~~nl~~----~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 84 QKVFIFSGTFRKNLDP----YGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred CCcccchhhHHHHhhh----ccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 1111111 0111110 001 122456777888888 45555655 999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+. ...++|++||+......+ ..++|+++..+......+
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~----------dri~vl~~G~i~~~g~~~ 221 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLEC----------QRFLVIEENKVRQYDSIQ 221 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhC----------CEEEEecCCeEeecCCHH
Confidence 89999999999998665555444 334999999996543323 356777776655433333
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-22 Score=177.32 Aligned_cols=162 Identities=16% Similarity=0.129 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|.. + .+|.|.++|.++.-.+...+ ....++.+|
T Consensus 13 ~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 76 (248)
T PRK03695 13 GPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-P-----------GSGSIQFAGQPLEAWSAAEL----ARHRAYLSQ 76 (248)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-C-----------CCeEEEECCEecCcCCHHHH----hhheEEecc
Confidence 5788888999999999999999999999999987 4 47999999976532111000 000111111
Q ss_pred HHhhh---ccCcEEEEEec-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------ee
Q 021103 133 VIAVS---KSSDIVLMVLD-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FN 190 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------li 190 (317)
....+ ...+++.+... ........+.+.++++.+++ ..++++..||+||+||+.+| ++
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~lll 156 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLL 156 (248)
T ss_pred cCccCCCccHHHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEE
Confidence 10000 00111111110 11112224467788999998 56888999999999999743 67
Q ss_pred ecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCC-hhhHHH
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDAT-VDDLID 230 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~-~~~~~~ 230 (317)
+||||++||+.....+.+.+ ... .++|++||+.. +.+++|
T Consensus 157 lDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 157 LDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC
Confidence 89999999999865554444 333 49999999965 555544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.6e-22 Score=176.33 Aligned_cols=163 Identities=16% Similarity=0.119 Sum_probs=101.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... |. .+.+|.|.++|.++...+. .. .......++.
T Consensus 22 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~--------~~~~G~i~~~g~~~~~~~~-~~-~~~~~~i~~~ 91 (252)
T PRK14255 22 KGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPG--------VTITGNVSLRGQNIYAPNE-DV-VQLRKQVGMV 91 (252)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC--------CCcccEEEEcCEEcccccc-cH-HHhcCeEEEE
Confidence 57788888999999999999999999999999864 20 0147999999976531110 00 0000111111
Q ss_pred HHHHhhh--ccCcEEEEEec--C-CCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVS--KSSDIVLMVLD--A-SKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~--~~~d~i~~v~~--~-~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.|....+ ...+++.+... . .........+.+.++.+++ ..++.+.+||+||+||+.+| ++
T Consensus 92 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 171 (252)
T PRK14255 92 FQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVIL 171 (252)
T ss_pred ECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 1111100 00111111110 0 1111112345556666654 35678899999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh
Q 021103 191 STLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV 225 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~ 225 (317)
+||||++||+.....+.+.+ ....++|++||+...
T Consensus 172 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~ 209 (252)
T PRK14255 172 LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQ 209 (252)
T ss_pred EcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHH
Confidence 99999999999866655544 333599999999653
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.8e-22 Score=163.94 Aligned_cols=193 Identities=19% Similarity=0.225 Sum_probs=139.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
-.++||.+.+|+.-+|||||||||||++-.|+|..+| ..|.++++| .++...+...+ .+.++++-
T Consensus 21 ln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp-----------~~G~v~f~g~~dl~~~~e~~I---Ar~GIGRK 86 (249)
T COG4674 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRP-----------QEGEVLFDGDTDLTKLPEHRI---ARAGIGRK 86 (249)
T ss_pred eeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCC-----------CcceEEEcCchhhccCCHHHH---HHhccCcc
Confidence 3688999999999999999999999999999999988 899999988 55554433211 23344444
Q ss_pred HHHHhhhcc---CcEEEEEec----------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE-------
Q 021103 131 RQVIAVSKS---SDIVLMVLD----------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~~----------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------- 188 (317)
+|....+.. .+++.+.+. .........++.+.|+..++ ..+.....||-||||++.|.
T Consensus 87 FQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P 166 (249)
T COG4674 87 FQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDP 166 (249)
T ss_pred ccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCC
Confidence 444433332 122211111 11223455689999999999 77888999999999999876
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 189 --FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 189 --lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
+++|||++|+..+. ..++++.+....+++++.||..+-+.+ ...+-|++......++.++.+...+
T Consensus 167 ~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~---------A~~VTVlh~G~VL~EGsld~v~~dp 237 (249)
T COG4674 167 KLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREI---------ADKVTVLHEGSVLAEGSLDEVQNDP 237 (249)
T ss_pred cEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHh---------hheeEEEeccceeecccHHHhhcCc
Confidence 88999999997655 456777777777999999997655432 3456788888888777777777766
Q ss_pred CeEE
Q 021103 264 NSVV 267 (317)
Q Consensus 264 ~~v~ 267 (317)
.++.
T Consensus 238 ~ViE 241 (249)
T COG4674 238 KVIE 241 (249)
T ss_pred ceEe
Confidence 6544
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-22 Score=167.75 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=89.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||+|||||+++|+|...| .+|.|.++|.++...+. .
T Consensus 18 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~--------------~ 72 (173)
T cd03246 18 LRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRP-----------TSGRVRLDGADISQWDP--------------N 72 (173)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEEcccCCH--------------H
Confidence 3578889999999999999999999999999999988 89999999876532110 0
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
.. . ..+.++....... . ..+.+.+ ||+||+||+++| +++||||++||+..
T Consensus 73 ~~----~--~~i~~~~q~~~~~-~-~tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~ 131 (173)
T cd03246 73 EL----G--DHVGYLPQDDELF-S-GSIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131 (173)
T ss_pred HH----H--hheEEECCCCccc-c-CcHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHH
Confidence 00 0 0011111100000 0 0111111 999999999988 99999999999998
Q ss_pred HHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 203 CYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 203 ~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
...+++.+ ...+ ++|++||+....+
T Consensus 132 ~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 132 ERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 66555544 3334 8999999965433
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.8e-22 Score=172.81 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=97.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-ECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.++.|++++|+||||||||||+++|+|...| .+|.+. +++..+..-..+.+.+. . .+.
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-----------~sG~i~~~~~~~~~~~~~~~l~~~----l-tv~ 67 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAP-----------DEGDFIGLRGDALPLGANSFILPG----L-TGE 67 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCCCEEEecCceeccccccccCCc----C-cHH
Confidence 467888999999999999999999999999999888 789886 66654321111111110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+..... ....... ..+.....+..+++ ..++++..||+||+||+++| +++|||++++|+
T Consensus 68 enl~~~---------~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 68 ENARMM---------ASLYGLD-GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHHH---------HHHcCCC-HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 111111 0000000 11111222334455 56788999999999999888 899999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~-~~~~~ 230 (317)
.....+.+.+. ...++|++||+... ..++|
T Consensus 138 ~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d 171 (213)
T PRK15177 138 ATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCH 171 (213)
T ss_pred HHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcC
Confidence 88666655442 23489999999654 34444
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.4e-22 Score=176.19 Aligned_cols=170 Identities=14% Similarity=0.057 Sum_probs=107.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...|..++ +.+|.|.++|.++...+..- .......++.+|
T Consensus 25 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~------~~~G~i~~~g~~i~~~~~~~--~~~~~~i~~v~q 96 (261)
T PRK14263 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGF------RFEGHVHFLGQDVYGKGVDP--VVVRRYIGMVFQ 96 (261)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCC------CCceEEEECCEeccccccch--HhhhhceEEEec
Confidence 5788999999999999999999999999999998652111 15799999998763211100 000111111111
Q ss_pred HHhh--hccCcEEEEEecCC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAV--SKSSDIVLMVLDAS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~--~~~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.... ....+++.+..... ........+.++++.+++ ..++++..||+||+||+.+| +++|||
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 1110 01111111111000 011123456778888887 23467789999999999988 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+++.+. ...++|++||+.. +.+++|
T Consensus 177 tsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 177 CSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred CccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 99999998666555443 3348999999965 445444
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-22 Score=170.58 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.+.++|.++...+. .......++.+
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~~~g~~~~~~~~----~~~~~~i~~v~ 88 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA-----------EEGKIEIDGIDISTIPL----EDLRSSLTIIP 88 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCeEEECCEEhHHCCH----HHHHhhEEEEe
Confidence 3578899999999999999999999999999999888 89999999976531110 00001111111
Q ss_pred HHHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
|....+ ...+++.+. +.. ....+.+.++ .+.++..||+||+||+++| +++||||++||+
T Consensus 89 q~~~~~~~tv~~~l~~~-~~~----~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 89 QDPTLFSGTIRSNLDPF-DEY----SDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred cCCcccCccHHHHhccc-CCC----CHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 111111 001111111 100 1122333343 4678899999999999998 899999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCChh
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATVD 226 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~~ 226 (317)
.....+.+.+. ...++|++||+....
T Consensus 159 ~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 159 ATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 98665555443 334899999996644
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-22 Score=194.66 Aligned_cols=162 Identities=15% Similarity=0.206 Sum_probs=107.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEec-CCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLD-LPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d-~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| ++|.|.+++ ..+.++. .+.+.+.. . +
T Consensus 24 ~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~~~~~~~--t---v 87 (556)
T PRK11819 24 KDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FEGEARPAPGIKVGYLPQEPQLDPEK--T---V 87 (556)
T ss_pred eCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEecCCCCCCCC--c---H
Confidence 588899999999999999999999999999999887 789998864 3344432 12111100 0 0
Q ss_pred HHHHhh-----------hcc-----CcEEEEE-------------ecCCCchhhHHHHHHHHHHccc-cccccCCccccc
Q 021103 131 RQVIAV-----------SKS-----SDIVLMV-------------LDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK 180 (317)
Q Consensus 131 ~~~~~~-----------~~~-----~d~i~~v-------------~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g 180 (317)
.+.+.. +.. ...-... .+.........++.++|+.+++ ..++++.+||||
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 011000 000 0000000 0000000113457778889988 668889999999
Q ss_pred ceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHH
Q 021103 181 KKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 181 ~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~ 230 (317)
|+||+.|| +++||||++||+.....+.+.+.. .+++|++|||.+ +..++|
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d 228 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAG 228 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcC
Confidence 99999998 999999999999997777666653 359999999965 444444
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-21 Score=174.45 Aligned_cols=164 Identities=17% Similarity=0.075 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+.. ..+.+|.|.++|.++...+. .. .......++.+|
T Consensus 20 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~------~~~~~G~v~~~g~~i~~~~~-~~-~~~~~~i~~~~q 91 (250)
T PRK14266 20 KNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIP------GFRHEGHIYLDGVDIYDPAV-DV-VELRKKVGMVFQ 91 (250)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCC------CCCCccEEEECCEEcccccc-cH-HHHhhheEEEec
Confidence 57888888999999999999999999999999853100 00168999999987532110 00 000111111111
Q ss_pred HHhhh--ccCcEEEEEecCC---CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVS--KSSDIVLMVLDAS---KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~---~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+ ...+++.+..... ........+.+.++.+++ ..++++..||+||+||++++ +++|
T Consensus 92 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 92 KPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred CCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11111 1112221111111 111223456677888776 24778899999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cccCcEEEecCCCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KIHNAEVLFREDAT 224 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~ 224 (317)
|||++||+.+...+.+.+ ....++|++||+..
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~ 206 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQ 206 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHH
Confidence 999999998865554444 34348999999954
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.85 E-value=8e-22 Score=199.62 Aligned_cols=178 Identities=15% Similarity=0.115 Sum_probs=118.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 498 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~idg~~i~~~~~~~l----r~~i~~v~Q 562 (711)
T TIGR00958 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP-----------TGGQVLLDGVPLVQYDHHYL----HRQVALVGQ 562 (711)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HhhceEEec
Confidence 578899999999999999999999999999999988 89999999988754432211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+... ....+.+.+.++..++ .....-.+||||||||+++|
T Consensus 563 ~~~lF~gTIreNI~~g~~----~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~I 638 (711)
T TIGR00958 563 EPVLFSGSVRENIAYGLT----DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRV 638 (711)
T ss_pred CccccccCHHHHHhcCCC----CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 233322211 1123345555555544 22334467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.+....+.+.... ..|+|++||+...... ...|+|+++.-+...+..+++
T Consensus 639 LILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~~----------aD~IivL~~G~ive~Gt~~eL 700 (711)
T TIGR00958 639 LILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVER----------ADQILVLKKGSVVEMGTHKQL 700 (711)
T ss_pred EEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHHh----------CCEEEEEECCEEEEeeCHHHH
Confidence 999999999999887766663222 3499999999654332 355778877665544443443
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.3e-22 Score=178.52 Aligned_cols=170 Identities=14% Similarity=0.113 Sum_probs=104.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .+.+|.|.++|.++...+... .......++.+|
T Consensus 37 ~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~------~~~~G~i~~~g~~l~~~~~~~--~~~~~~i~~v~q 108 (274)
T PRK14265 37 VDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG------AKVEGRLLYRDRNIYDSQINS--VKLRRQVGMVFQ 108 (274)
T ss_pred eeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC------CCcCceEEECCEecccccchh--HHHhhcEEEEcc
Confidence 578889999999999999999999999999999753000 014799999997653211000 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VIAVSK--SSDIVLMVLDASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
....+. ..+.+.+...... .....+.+.+.++.+++ ..++++..||+||+||+++| +++|||
T Consensus 109 ~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEP 188 (274)
T PRK14265 109 RPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEP 188 (274)
T ss_pred CCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 111110 0111111000000 01112334556676665 35678899999999999998 999999
Q ss_pred CCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 195 LTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
|++||+.....+.+.+. ...++|++||+.. +.+++|
T Consensus 189 t~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d 228 (274)
T PRK14265 189 CSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD 228 (274)
T ss_pred cccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999998665555443 3358999999964 444443
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=6e-22 Score=182.72 Aligned_cols=158 Identities=21% Similarity=0.214 Sum_probs=104.0
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc---CcEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS---SDIV 143 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~---~d~i 143 (317)
|+|+||||||||+++|+|...| .+|.|.++|.++... +. .....++.+|....+.. .+++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p-----------~~G~I~i~g~~i~~~--~~----~~~~i~~v~q~~~l~~~~tv~enl 63 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP-----------DSGSIMLDGEDVTNV--PP----HLRHINMVFQSYALFPHMTVEENV 63 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC-----------CceEEEECCEECCCC--CH----HHCCEEEEecCccccCCCcHHHHH
Confidence 5899999999999999999988 899999999865321 10 11122222222211111 1222
Q ss_pred EEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHh
Q 021103 144 LMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 144 ~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l 210 (317)
.+... ..........+.++++.+++ ..++++.+|||||+||++|| +++||||++||+.....+.+.+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 64 AFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 11111 11112223467788999999 57889999999999999998 9999999999999866555444
Q ss_pred ---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 211 ---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 211 ---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
.. ..++|++|||.+ +..++| .++++++.-+.
T Consensus 144 ~~l~~~~g~tiiivTHd~~e~~~~~d----------~i~vl~~G~i~ 180 (325)
T TIGR01187 144 KTIQEQLGITFVFVTHDQEEAMTMSD----------RIAIMRKGKIA 180 (325)
T ss_pred HHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 32 238999999954 344444 35566655443
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-21 Score=156.52 Aligned_cols=168 Identities=20% Similarity=0.152 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCC-----ccccccCCc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG-----IIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g-----~~~~~~~~~ 127 (317)
.++++.+..|++++|=||+|+||||||++|.+.+.+ ++|.|.+.-.. ..+|... +..-.+..+
T Consensus 28 ~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~-----------d~G~I~v~H~g-~~vdl~~a~pr~vl~vRr~Ti 95 (235)
T COG4778 28 RNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLP-----------DEGQILVRHEG-EWVDLVTAEPREVLEVRRTTI 95 (235)
T ss_pred eceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCC-----------CCceEEEEeCc-chhhhhccChHHHHHHHHhhh
Confidence 577888889999999999999999999999999988 89999874211 1223221 112234567
Q ss_pred hhHHHHHhhhccCcEEEEEec-----CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------ee
Q 021103 128 GRGRQVIAVSKSSDIVLMVLD-----ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~-----~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
+++.|++..++....+..+.. +........++..+|.++++ .-.-.|..+|||++||++|| ++
T Consensus 96 GyVSQFLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILL 175 (235)
T COG4778 96 GYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILL 175 (235)
T ss_pred HHHHHHHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEE
Confidence 788888887776444333221 22233345678889999998 45667899999999999999 89
Q ss_pred ecCCCCCCCHHHHHHHHH---HhcccC-cEEEecCCCChhh-HHHHH
Q 021103 191 STLPLTHVDEKLCYQILH---EYKIHN-AEVLFREDATVDD-LIDVI 232 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~---~l~~~~-~~i~~shd~~~~~-~~~~~ 232 (317)
+||||+.||..+...+++ +-+..| +++-+-||.++.+ ++|++
T Consensus 176 LDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 176 LDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred ecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhhe
Confidence 999999999887555544 444555 8899999977654 44553
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-22 Score=198.86 Aligned_cols=171 Identities=18% Similarity=0.222 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...+++.|
T Consensus 482 ~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p-----------~~G~I~idg~~l~~~~~~~l----r~~i~~v~Q 546 (694)
T TIGR03375 482 DNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP-----------TEGSVLLDGVDIRQIDPADL----RRNIGYVPQ 546 (694)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEEhhhCCHHHH----HhccEEECC
Confidence 478899999999999999999999999999999988 89999999988765442221 112222233
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ .+...-..|||||+||+++|
T Consensus 547 ~~~lf~~TI~eNi~~~~----~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~i 622 (694)
T TIGR03375 547 DPRLFYGTLRDNIALGA----PYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPI 622 (694)
T ss_pred ChhhhhhhHHHHHhCCC----CCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22332211 11223344555555544 22334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+++...+.+.+. ...|+|++||+...... ...|+++++.-+..
T Consensus 623 liLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~----------~D~iivl~~G~i~e 679 (694)
T TIGR03375 623 LLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDL----------VDRIIVMDNGRIVA 679 (694)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh----------CCEEEEEeCCEEEe
Confidence 99999999999998777766665 33599999999764443 34577887765543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=179.67 Aligned_cols=170 Identities=15% Similarity=0.142 Sum_probs=105.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+... .|.+|.|.++|.++...... .. ......++.+|
T Consensus 62 ~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~------~p~~G~I~i~g~~i~~~~~~-~~-~~~~~i~~v~q 133 (305)
T PRK14264 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKA------ARIDGSVELDGQDIYQDGVN-LV-ELRKRVGMVFQ 133 (305)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCC------CCCceEEEECCEEccccccc-HH-HHhhceEEEcc
Confidence 577888999999999999999999999999999752000 01689999999765321100 00 00001111111
Q ss_pred HHhhhc--cCcEEEEEe------------c--CCC-chhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE-
Q 021103 133 VIAVSK--SSDIVLMVL------------D--ASK-SEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~------------~--~~~-~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia- 188 (317)
....+. ..+++.+.. . ... .......+.++++.+++ ..++++..||+||+||+.||
T Consensus 134 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAr 213 (305)
T PRK14264 134 SPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIAR 213 (305)
T ss_pred CCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHH
Confidence 100000 000010000 0 001 11123456777887776 34678899999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCCh-hhHHH
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATV-DDLID 230 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~-~~~~~ 230 (317)
+++||||++||+.....+.+.+ ....++|++||+... .++++
T Consensus 214 aL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d 267 (305)
T PRK14264 214 CLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISD 267 (305)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcC
Confidence 9999999999999865554444 333589999999654 45554
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-21 Score=165.07 Aligned_cols=158 Identities=18% Similarity=0.108 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++..+++|++.+|+|+||||||||++.++|...| .+|.+.+.|+.+.-.++. ...+..++++..
T Consensus 48 ~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~p-----------ssg~~~~~G~~~G~~~~~---~elrk~IG~vS~ 113 (257)
T COG1119 48 GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPP-----------SSGDVTLLGRRFGKGETI---FELRKRIGLVSS 113 (257)
T ss_pred cccceeecCCCcEEEECCCCCCHHHHHHHHhcccCC-----------CCCceeeeeeeccCCcch---HHHHHHhCccCH
Confidence 678888999999999999999999999999999998 788888888877655541 112222332221
Q ss_pred HH-hhhc----cCcEEEEEecC-------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------e
Q 021103 133 VI-AVSK----SSDIVLMVLDA-------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 133 ~~-~~~~----~~d~i~~v~~~-------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.+ ..++ ..|+++-.... .....+...+..+|+.+|+ ..++++..||-||+||+.|| +
T Consensus 114 ~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LL 193 (257)
T COG1119 114 ELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELL 193 (257)
T ss_pred HHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEE
Confidence 11 1112 23444322111 1123355678889999999 78999999999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhcc---c--C-cEEEecCCCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEYKI---H--N-AEVLFREDAT 224 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~~---~--~-~~i~~shd~~ 224 (317)
|+|||++|||......+++.+.. . + ++++|||..+
T Consensus 194 iLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e 234 (257)
T COG1119 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE 234 (257)
T ss_pred EecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh
Confidence 99999999999988777766642 2 2 7999999843
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.9e-22 Score=212.40 Aligned_cols=163 Identities=15% Similarity=0.154 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| ++|.|.++|.++.. +. ......+++..|
T Consensus 1956 ~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-----------tsG~I~i~G~~i~~-~~----~~~r~~IGy~pQ 2019 (2272)
T TIGR01257 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTV-----------TSGDATVAGKSILT-NI----SDVHQNMGYCPQ 2019 (2272)
T ss_pred EeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECcc-hH----HHHhhhEEEEec
Confidence 578899999999999999999999999999999988 89999999987631 10 001111222222
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+.+.+.. .........+.+.++|+.+++ ..++++..||||||||+.+| +++||||+
T Consensus 2020 ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTs 2099 (2272)
T TIGR01257 2020 FDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTT 2099 (2272)
T ss_pred cccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 211111 111111111 111112223456778999999 67889999999999999888 89999999
Q ss_pred CCCHHHHHHHHH---HhcccC-cEEEecCCC-ChhhHHHH
Q 021103 197 HVDEKLCYQILH---EYKIHN-AEVLFREDA-TVDDLIDV 231 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~~~-~~i~~shd~-~~~~~~~~ 231 (317)
|||+...+.+.+ .+...+ ++|++||+. +++.+||+
T Consensus 2100 GLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2100 GMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 999998665544 443334 899999994 45566654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.1e-21 Score=162.15 Aligned_cols=124 Identities=19% Similarity=0.145 Sum_probs=90.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+||||||||||||++.+ .+|.+.+.+.. .. +
T Consensus 12 ~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~---------------~~G~v~~~~~~-~~-----~------------- 57 (176)
T cd03238 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY---------------ASGKARLISFL-PK-----F------------- 57 (176)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHhh---------------cCCcEEECCcc-cc-----c-------------
Confidence 57889999999999999999999999999852 35777665431 00 0
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~L 198 (317)
.. ..+.++.. .++|+.+++ .+++++..||+||+||++++ +++||||++|
T Consensus 58 -----~~-~~~~~~~q-----------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~L 120 (176)
T cd03238 58 -----SR-NKLIFIDQ-----------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGL 120 (176)
T ss_pred -----cc-ccEEEEhH-----------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccC
Confidence 00 00111110 356788887 36888999999999999987 8999999999
Q ss_pred CHHHHHHHHHHhc---cc-CcEEEecCCCChhh
Q 021103 199 DEKLCYQILHEYK---IH-NAEVLFREDATVDD 227 (317)
Q Consensus 199 D~~~~~~~l~~l~---~~-~~~i~~shd~~~~~ 227 (317)
|+.....+.+.+. .. .++|++||+.+..+
T Consensus 121 D~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 121 HQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 9998665555443 23 49999999976443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=195.03 Aligned_cols=170 Identities=14% Similarity=0.117 Sum_probs=114.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++.-++...++ ...++..|
T Consensus 352 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~r----~~i~~v~Q 416 (588)
T PRK13657 352 EDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDP-----------QSGRILIDGTDIRTVTRASLR----RNIAVVFQ 416 (588)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEhhhCCHHHHH----hheEEEec
Confidence 577889999999999999999999999999999988 899999999887544322111 11222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+...++..++ ........|||||+||+++|
T Consensus 417 ~~~lf~~Ti~~Ni~~~~----~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 417 DAGLFNRSIEDNIRVGR----PDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred CcccccccHHHHHhcCC----CCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22332211 11112234444444443 22334457999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+++...+++.+. ...++|++||+....+. ...+++++...+.
T Consensus 493 liLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~----------~D~ii~l~~G~i~ 548 (588)
T PRK13657 493 LILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRN----------ADRILVFDNGRVV 548 (588)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHh----------CCEEEEEECCEEE
Confidence 99999999999999777766664 23599999999765443 3456777665444
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.8e-22 Score=177.16 Aligned_cols=157 Identities=19% Similarity=0.197 Sum_probs=99.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-----------ECCeeEEEecCCCccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDLPGIIE 121 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-----------~~g~~i~~~d~~g~~~ 121 (317)
.+++ .+.+|++++|+|+||||||||+++|+|...| ++|.|. ++|.++...... ...
T Consensus 18 ~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 84 (255)
T cd03236 18 HRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKP-----------NLGKFDDPPDWDEILDEFRGSELQNYFTK-LLE 84 (255)
T ss_pred hcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC-----------CCceEeeccccchhhhhccCchhhhhhHH-hhh
Confidence 3555 3678999999999999999999999999988 889986 334332110000 000
Q ss_pred cccCCchhHHHHHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 122 GASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
. .....+..+....... .+.+...+ ........+.++++.+++ ..++.+..||+||+||++++
T Consensus 85 ~-~~~i~~~~~~~~~~~~~~~~~i~~~l---~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i 160 (255)
T cd03236 85 G-DVKVIVKPQYVDLIPKAVKGKVGELL---KKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF 160 (255)
T ss_pred c-ccceeeecchhccCchHHHHHHHHHh---chhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 0 0000000111100000 00000000 111223467788999998 56888999999999999988
Q ss_pred eeecCCCCCCCHHHHH---HHHHHhccc-CcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCY---QILHEYKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~---~~l~~l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.... ++++.+... .++|++||+....
T Consensus 161 lllDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~ 202 (255)
T cd03236 161 YFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVL 202 (255)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHH
Confidence 8999999999999755 445554433 4899999996543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.2e-21 Score=163.58 Aligned_cols=140 Identities=13% Similarity=0.098 Sum_probs=90.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...| .+|.+.++|.++...+.. ......
T Consensus 17 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-----------~~G~i~~~g~~~~~~~~~---~~~~~~------ 76 (182)
T cd03215 17 RDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPP-----------ASGEITLDGKPVTRRSPR---DAIRAG------ 76 (182)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCccCHH---HHHhCC------
Confidence 567888889999999999999999999999999988 899999999765321100 000000
Q ss_pred HHhhhccCcEEEEEecCC--CchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 133 VIAVSKSSDIVLMVLDAS--KSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
+.++.... ........+.+.+... ..||+||+||+.+| +++||||++||+.
T Consensus 77 ----------i~~~~q~~~~~~~~~~~t~~e~l~~~--------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~ 138 (182)
T cd03215 77 ----------IAYVPEDRKREGLVLDLSVAENIALS--------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138 (182)
T ss_pred ----------eEEecCCcccCcccCCCcHHHHHHHH--------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHH
Confidence 11111100 0000000111111110 01999999999988 9999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCC-ChhhHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDA-TVDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~-~~~~~~~ 230 (317)
....+.+.+ ... .++|++||+. .+.++++
T Consensus 139 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d 172 (182)
T cd03215 139 AKAEIYRLIRELADAGKAVLLISSELDELLGLCD 172 (182)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCC
Confidence 866555544 333 4999999995 4445443
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.5e-21 Score=175.28 Aligned_cols=171 Identities=15% Similarity=0.075 Sum_probs=104.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| +|++ +.+|.|.++|.++...+. ... .......++..
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~~~---~~sG~i~~~g~~~~~~~~-~~~~~~~~~~i~~~~ 105 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL---YPGN---HYEGEIILHPDNVNILSP-EVDPIEVRMRISMVF 105 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCC---CCCC---CcccEEEEcCcccccccc-ccCHHHHhccEEEEc
Confidence 678888999999999999999999999999999764 1111 257999998866532110 000 00011111111
Q ss_pred HHHhhhc--cCcEEEEEec--CC-CchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSK--SSDIVLMVLD--AS-KSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~--~~-~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
+....+. ..+++.+... .. ......+.+.++++.+++ ..++.+..||+||+||+.++ +++
T Consensus 106 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 185 (265)
T PRK14252 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185 (265)
T ss_pred cCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 1110000 0111111110 00 011112345566666664 34678899999999999988 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCC-hhhHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDAT-VDDLID 230 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~-~~~~~~ 230 (317)
||||++||+.....+.+.+. ...++|++||+.+ +.+++|
T Consensus 186 DEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d 228 (265)
T PRK14252 186 DEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSD 228 (265)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCC
Confidence 99999999998665555443 3348999999954 334443
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=192.42 Aligned_cols=150 Identities=21% Similarity=0.226 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|++|||||||+|+|+|...| .+|.|.++|.++.-+ .. ..+...+++.|
T Consensus 352 ~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p-----------~~G~I~i~g~~i~~~-~~----~lr~~i~~V~Q 415 (529)
T TIGR02868 352 DGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP-----------LQGEVTLDGVSVSSL-QD----ELRRRISVFAQ 415 (529)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhH-HH----HHHhheEEEcc
Confidence 578899999999999999999999999999999988 899999999876532 11 11222233333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ .....-..|||||+||+++|
T Consensus 416 ~~~lF~~TI~eNI~~g~----~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 416 DAHLFDTTVRDNLRLGR----PDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred CcccccccHHHHHhccC----CCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 3322222 23333221 12233456666666655 11223457999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFRED 222 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd 222 (317)
+++||||++||.++...+.+.+.. ..|+|++||+
T Consensus 492 liLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 492 LLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 999999999999987777766653 3499999997
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-21 Score=188.61 Aligned_cols=184 Identities=16% Similarity=0.097 Sum_probs=128.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
++++|++++|+.+|||||+|+||||+.+.|.+.+.| .+|.|.+||.++.-+|..-+ +..++.+.|
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~P-----------tsG~IllDG~~i~~~~~~~l----r~~Ig~V~Q 549 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP-----------TSGRILLDGVPISDINHKYL----RRKIGLVGQ 549 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCeehhhcCHHHH----HHHeeeeec
Confidence 789999999999999999999999999999999988 99999999999876663221 122333334
Q ss_pred HHhhhcc--CcEEEEEecCCCchhh-----HHHHHHHHHHccc----cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGH-----RQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~-----~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
..-++.. .|+|.+..+....++. ...+.+++..|-- ....+-.+||||||||++|| +|+|
T Consensus 550 EPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILD 629 (716)
T KOG0058|consen 550 EPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILD 629 (716)
T ss_pred cceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEe
Confidence 3333322 4666666552211111 1112223333322 44556679999999999999 9999
Q ss_pred CCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 193 LPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 193 EPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
|.||+||.++ +++.++.+....|++++.|....-+ ...+|+|++|.-+...+..+++.+
T Consensus 630 EATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~----------~Ad~Ivvi~~G~V~E~G~h~eLl~ 691 (716)
T KOG0058|consen 630 EATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR----------HADQIVVIDKGRVVEMGTHDELLS 691 (716)
T ss_pred chhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh----------hccEEEEEcCCeEEecccHHHHhh
Confidence 9999999886 5666666556679999999843222 356899999998776554444443
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-21 Score=193.08 Aligned_cols=164 Identities=16% Similarity=0.227 Sum_probs=107.3
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEec-CCCccccccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLD-LPGIIEGASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d-~~g~~~~~~~~~~~ 129 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.+++ ..+.++. .+.+.....
T Consensus 21 l~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-----------~~G~i~~~~~~~i~~v~Q~~~~~~~~t----- 84 (552)
T TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKE-----------FNGEARPAPGIKVGYLPQEPQLDPTKT----- 84 (552)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEecCCCEEEEEeccCCCCCCCc-----
Confidence 3678899999999999999999999999999999887 789998864 2344332 122211100
Q ss_pred HHHHHhh-hc-----------------cCcE-----------EEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccc
Q 021103 130 GRQVIAV-SK-----------------SSDI-----------VLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYF 179 (317)
Q Consensus 130 ~~~~~~~-~~-----------------~~d~-----------i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~ 179 (317)
+.+.... +. ..+. +.-.++.........++.++++.+++ ..++++.+|||
T Consensus 85 v~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSg 164 (552)
T TIGR03719 85 VRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSG 164 (552)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCH
Confidence 0011000 00 0000 00000000000012345667888888 56788999999
Q ss_pred cceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC-hhhHHHH
Q 021103 180 KKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 180 g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
||+||+.|| +++||||++||+.....+.+.+.. .+++|++|||.. +..++|.
T Consensus 165 Gqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~ 227 (552)
T TIGR03719 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGW 227 (552)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCe
Confidence 999999988 999999999999998777766653 359999999955 3444443
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11058 GTPase HflX; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=173.77 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEE
Q 021103 24 EYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI 103 (317)
Q Consensus 24 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~ 103 (317)
+...+.++.++.++++++......+..+.. .....+...|+|+|++|||||||||+|+|....++++||||+++..+.
T Consensus 161 e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~--~r~~~~~p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~ 238 (426)
T PRK11058 161 ETDRRLLRNRIVQILSRLERVEKQREQGRR--ARIKADVPTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRR 238 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HhhhcCCCEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEE
Confidence 333445566666666554443322211000 000112358999999999999999999998877899999999999999
Q ss_pred EEECCe-eEEEecCCCccccccCC-chhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccc
Q 021103 104 IHYNDT-KIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKK 181 (317)
Q Consensus 104 i~~~g~-~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~ 181 (317)
+.+.+. ++.++||+|++...... ...+......+..+|++++++|++++..... +.
T Consensus 239 i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~-l~--------------------- 296 (426)
T PRK11058 239 IDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQEN-IE--------------------- 296 (426)
T ss_pred EEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHH-HH---------------------
Confidence 988775 88899999985432221 1112233445678999999999876532111 10
Q ss_pred eeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHH
Q 021103 182 KKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKL 259 (317)
Q Consensus 182 ~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l 259 (317)
....++..+. ....|+++|+||+|+..... ....
T Consensus 297 --------------------~v~~iL~el~------------------------~~~~pvIiV~NKiDL~~~~~~~~~~~ 332 (426)
T PRK11058 297 --------------------AVNTVLEEID------------------------AHEIPTLLVMNKIDMLDDFEPRIDRD 332 (426)
T ss_pred --------------------HHHHHHHHhc------------------------cCCCCEEEEEEcccCCCchhHHHHHH
Confidence 0111121111 01479999999999974311 1111
Q ss_pred -hcCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 260 -ARQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 260 -~~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...+..+.+||++|.|+++|.+.|.+.+.
T Consensus 333 ~~~~~~~v~ISAktG~GIdeL~e~I~~~l~ 362 (426)
T PRK11058 333 EENKPIRVWLSAQTGAGIPLLFQALTERLS 362 (426)
T ss_pred hcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence 11233588999999999999999988874
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-21 Score=194.58 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=109.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 349 ~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~v~Q 413 (571)
T TIGR02203 349 DSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEP-----------DSGQILLDGHDLADYTLASL----RRQVALVSQ 413 (571)
T ss_pred cCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCeEEECCEeHHhcCHHHH----HhhceEEcc
Confidence 577889999999999999999999999999999988 89999999987654332111 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. ......+.+.+.++.+++ .....-..|||||+||+++|
T Consensus 414 ~~~lf~~Ti~~Ni~~~~---~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~i 490 (571)
T TIGR02203 414 DVVLFNDTIANNIAYGR---TEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPI 490 (571)
T ss_pred CcccccccHHHHHhcCC---CCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 2222211 12222111 012233456666666655 12223357999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~ 230 (317)
+++||||++||..+...+++.+. ...++|++||+......+|
T Consensus 491 llLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 491 LILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCC
Confidence 89999999999998777766654 3359999999986655444
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=199.00 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=115.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...++ ...+++.|
T Consensus 491 ~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p-----------~~G~I~idg~~i~~~~~~~lr----~~i~~v~Q 555 (708)
T TIGR01193 491 SDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA-----------RSGEILLNGFSLKDIDRHTLR----QFINYLPQ 555 (708)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCcEEEECCEEHHHcCHHHHH----HheEEEec
Confidence 578899999999999999999999999999999988 899999999887544422211 11222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+..+ +....+.+.+.++..++ ........|||||+||+++|
T Consensus 556 ~~~lf~gTI~eNi~l~~~---~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~i 632 (708)
T TIGR01193 556 EPYIFSGSILENLLLGAK---ENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKV 632 (708)
T ss_pred CceehhHHHHHHHhccCC---CCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCE
Confidence 2222211 233322211 11122334444444443 23344578999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||.++...+.+.+.. ..|+|++||+...... ...++++++.-+.
T Consensus 633 liLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~~----------~D~i~~l~~G~i~ 687 (708)
T TIGR01193 633 LILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAKQ----------SDKIIVLDHGKII 687 (708)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHHc----------CCEEEEEECCEEE
Confidence 999999999999987766666543 3599999999765443 3457777765544
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-21 Score=191.27 Aligned_cols=174 Identities=18% Similarity=0.161 Sum_probs=113.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchh
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~ 129 (317)
-.++++.+.+|+.+||+||||||||||+++|+|...+. ..+|.|.++|.++.. ....|+..+...-.
T Consensus 84 L~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~---------~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~-- 152 (659)
T PLN03211 84 LNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGN---------NFTGTILANNRKPTKQILKRTGFVTQDDILY-- 152 (659)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC---------ceeEEEEECCEECchhhccceEEECcccccC--
Confidence 36788999999999999999999999999999998651 148999999986521 00012221110000
Q ss_pred HHHHHhhhccCcEEEEEe--c---CCCchhhHHHHHHHHHHccc--cc-----cccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKSSDIVLMVL--D---ASKSEGHRQILTKELEAVGL--RL-----NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~--~---~~~~~~~~~~~~~~L~~~~l--~~-----~~~~~~LS~g~~qr~~ia--------- 188 (317)
..+...+.+.+.. . ........+.+.++++.+|+ .. +.....|||||+||+.+|
T Consensus 153 -----~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i 227 (659)
T PLN03211 153 -----PHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL 227 (659)
T ss_pred -----CcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE
Confidence 0001111111100 0 01112233457788999998 22 345678999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---cc-CcEEEecCCCC--hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IH-NAEVLFREDAT--VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~--~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||+|||......+++.+. .. .++|+++|++. +.+++|. ++++++..+.
T Consensus 228 LlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~----------iilL~~G~iv 286 (659)
T PLN03211 228 LILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDS----------VLVLSEGRCL 286 (659)
T ss_pred EEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhce----------EEEecCCcEE
Confidence 89999999999998666555543 33 49999999975 3455543 5566655444
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.1e-21 Score=155.72 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=83.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee-EEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~-i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++...+|+.++|+|+||+|||||+++|+|..++ .+|.|.++|.. +.+
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~~~~~i~~------------------ 67 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEP-----------DEGIVTWGSTVKIGY------------------ 67 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----------CceEEEECCeEEEEE------------------
Confidence 577889999999999999999999999999999988 89999997631 100
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKL 202 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~ 202 (317)
+ .+||+||+||++++ +++|||+++||+..
T Consensus 68 --------------~----------------------------~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~ 105 (144)
T cd03221 68 --------------F----------------------------EQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES 105 (144)
T ss_pred --------------E----------------------------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 0 01899999999888 89999999999998
Q ss_pred HHHHHHHhcc-cCcEEEecCCCC
Q 021103 203 CYQILHEYKI-HNAEVLFREDAT 224 (317)
Q Consensus 203 ~~~~l~~l~~-~~~~i~~shd~~ 224 (317)
...+.+.+.. ..+++++||+.+
T Consensus 106 ~~~l~~~l~~~~~til~~th~~~ 128 (144)
T cd03221 106 IEALEEALKEYPGTVILVSHDRY 128 (144)
T ss_pred HHHHHHHHHHcCCEEEEEECCHH
Confidence 7777666653 348999999954
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.1e-22 Score=169.77 Aligned_cols=137 Identities=19% Similarity=0.054 Sum_probs=90.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++...+.. .......++.
T Consensus 17 ~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p-----------~~G~i~~~g~~~~~~~~~---~~~~~~i~~v 82 (200)
T cd03217 17 KGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEV-----------TEGEILFKGEDITDLPPE---ERARLGIFLA 82 (200)
T ss_pred eccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------CccEEEECCEECCcCCHH---HHhhCcEEEe
Confidence 5778888899999999999999999999999994 45 899999999765322100 0000001111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
++....+ .. ..+.+.+ ......||+||+||+.++ +++||||++||+.
T Consensus 83 ~q~~~~~-------------~~----~~~~~~l-------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~ 138 (200)
T cd03217 83 FQYPPEI-------------PG----VKNADFL-------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDID 138 (200)
T ss_pred ecChhhc-------------cC----ccHHHHH-------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 1110000 00 0111222 223368999999999988 8999999999998
Q ss_pred HHHHHHHHh---cc-cCcEEEecCCCChhh
Q 021103 202 LCYQILHEY---KI-HNAEVLFREDATVDD 227 (317)
Q Consensus 202 ~~~~~l~~l---~~-~~~~i~~shd~~~~~ 227 (317)
....+++.+ .. ..++|++||+.+...
T Consensus 139 ~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 865554444 33 348999999965443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-21 Score=161.00 Aligned_cols=101 Identities=12% Similarity=0.062 Sum_probs=80.6
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
+.+.+|++++|+|+||||||||+++|+|...| .+|.|.++|..+.++. |.
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~i~~~~----------------q~--- 69 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIP-----------NGDNDEWDGITPVYKP----------------QY--- 69 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCcEEEECCEEEEEEc----------------cc---
Confidence 56778999999999999999999999999988 8999999886543210 00
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
..||+||+||+++| +++||||++||+.....+.
T Consensus 70 --------------------------------------~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~ 111 (177)
T cd03222 70 --------------------------------------IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAA 111 (177)
T ss_pred --------------------------------------CCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence 00899999999988 8999999999999866554
Q ss_pred HHh---cc-c-CcEEEecCCCCh
Q 021103 208 HEY---KI-H-NAEVLFREDATV 225 (317)
Q Consensus 208 ~~l---~~-~-~~~i~~shd~~~ 225 (317)
+.+ .. . .+++++||+...
T Consensus 112 ~~l~~~~~~~~~tiiivsH~~~~ 134 (177)
T cd03222 112 RAIRRLSEEGKKTALVVEHDLAV 134 (177)
T ss_pred HHHHHHHHcCCCEEEEEECCHHH
Confidence 444 32 3 489999999653
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-21 Score=187.55 Aligned_cols=160 Identities=15% Similarity=0.153 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc-cccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI-IEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~-~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|..++ +.+|.|.++|.++. .+. ........++..
T Consensus 277 ~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~----------~~~G~i~~~g~~~~----~~~~~~~~~~~i~~v~ 342 (490)
T PRK10938 277 HNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ----------GYSNDLTLFGRRRG----SGETIWDIKKHIGYVS 342 (490)
T ss_pred eeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc----------ccCCeEEEecccCC----CCCCHHHHHhhceEEC
Confidence 577888999999999999999999999999997542 14799999886531 010 000111222222
Q ss_pred HHHhhhc-----cCcEEEEE-ec---CC--CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------
Q 021103 132 QVIAVSK-----SSDIVLMV-LD---AS--KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~~~~-----~~d~i~~v-~~---~~--~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|...... ..+++... .+ .. ......+.+.++++.+++ ..++++.+|||||+||+.+|
T Consensus 343 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l 422 (490)
T PRK10938 343 SSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTL 422 (490)
T ss_pred HHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2211110 01111100 00 00 111223467888999998 25778899999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHH---hccc-C-cEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHE---YKIH-N-AEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~---l~~~-~-~~i~~shd~~~~ 226 (317)
+++||||++||+.....+.+. +... + ++|++|||.+..
T Consensus 423 llLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~ 465 (490)
T PRK10938 423 LILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDA 465 (490)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhh
Confidence 999999999999986665554 4333 3 599999996543
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-21 Score=191.38 Aligned_cols=172 Identities=12% Similarity=0.092 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 352 ~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 416 (585)
T TIGR01192 352 FDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDP-----------TVGQILIDGIDINTVTRESL----RKSIATVFQ 416 (585)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCC-----------CCCEEEECCEEhhhCCHHHH----HhheEEEcc
Confidence 577899999999999999999999999999999988 89999999987654332111 111112222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++.. |+ ........|||||+||+++|
T Consensus 417 ~~~lf~~ti~~Ni~~~~----~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 417 DAGLFNRSIRENIRLGR----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred CCccCcccHHHHHhcCC----CCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2111111 12222211 111111222222222 22 34456778999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+++||||++||.++...+.+.+. ...++|++||+.+.... ...++++++..+...
T Consensus 493 lilDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~----------~d~i~~l~~G~i~~~ 550 (585)
T TIGR01192 493 LVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRN----------ADLVLFLDQGRLIEK 550 (585)
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHc----------CCEEEEEECCEEEEE
Confidence 99999999999998776665554 34599999999654332 345778877655433
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-21 Score=161.00 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=90.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+ .+|.+.++|.++.. + . ..
T Consensus 19 ~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-----------~~G~i~~~g~~~~~-----~-~---------~~ 72 (178)
T cd03247 19 KNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-----------QQGEITLDGVPVSD-----L-E---------KA 72 (178)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCEEEECCEEHHH-----H-H---------HH
Confidence 578899999999999999999999999999999887 88999998875411 0 0 00
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. + ..+.++.+.... .. ..+.+.+ +..||+||+||+.+| +++||||++||+...
T Consensus 73 ~----~--~~i~~~~q~~~~-~~-~tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~ 134 (178)
T cd03247 73 L----S--SLISVLNQRPYL-FD-TTLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134 (178)
T ss_pred H----H--hhEEEEccCCee-ec-ccHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 0 0 001111110000 00 0111111 678999999999988 999999999999886
Q ss_pred HHHHHHhc---ccCcEEEecCCCChhh
Q 021103 204 YQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 204 ~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
..+++.+. ...++|++||+.....
T Consensus 135 ~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 135 RQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 65555443 3348999999966443
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-21 Score=159.58 Aligned_cols=129 Identities=17% Similarity=0.157 Sum_probs=88.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||+|||||+++|+|...| .+|.+.++|.++...+.. .
T Consensus 19 ~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~-----------~~G~i~~~g~~~~~~~~~--------------~ 73 (171)
T cd03228 19 KDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDP-----------TSGEILIDGVDLRDLDLE--------------S 73 (171)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCCEEEECCEEhhhcCHH--------------H
Confidence 578899999999999999999999999999999988 889999998765321100 0
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. + ..+.++...... .. ..+.+.+ ||+||+||+.++ +++||||++||+...
T Consensus 74 ~----~--~~i~~~~~~~~~-~~-~t~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~ 132 (171)
T cd03228 74 L----R--KNIAYVPQDPFL-FS-GTIRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETE 132 (171)
T ss_pred H----H--hhEEEEcCCchh-cc-chHHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHH
Confidence 0 0 001111110000 00 0111111 999999999988 999999999999886
Q ss_pred HHHHHHh---cccCcEEEecCCCChhh
Q 021103 204 YQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 204 ~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
..+.+.+ ....+++++||+.+..+
T Consensus 133 ~~l~~~l~~~~~~~tii~~sh~~~~~~ 159 (171)
T cd03228 133 ALILEALRALAKGKTVIVIAHRLSTIR 159 (171)
T ss_pred HHHHHHHHHhcCCCEEEEEecCHHHHH
Confidence 6554444 33348999999965443
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1160 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.6e-20 Score=169.98 Aligned_cols=155 Identities=26% Similarity=0.305 Sum_probs=117.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch----hHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG----RGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~----~~~~~~~~ 136 (317)
..++||||+||+|||||+|+|+|.... +++.||||+|+....+.++|+.+.++||+|+++...-..+ ........
T Consensus 178 ~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~a 257 (444)
T COG1160 178 PIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTLKA 257 (444)
T ss_pred ceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhHhH
Confidence 579999999999999999999999975 8999999999999999999999999999999764332211 12334456
Q ss_pred hccCcEEEEEecCCCchhhHH-HHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 SKSSDIVLMVLDASKSEGHRQ-ILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~-~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
+..+|++++++|+..+...++ ++..+.
T Consensus 258 I~~a~vvllviDa~~~~~~qD~~ia~~i---------------------------------------------------- 285 (444)
T COG1160 258 IERADVVLLVIDATEGISEQDLRIAGLI---------------------------------------------------- 285 (444)
T ss_pred HhhcCEEEEEEECCCCchHHHHHHHHHH----------------------------------------------------
Confidence 678999999999876543222 111111
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--hHH----HH------hcCCCeEEEeccccccHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVD----KL------ARQPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~----~l------~~~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ..++++++|+||||+.... ..+ .+ ..+.+.+++||+++.++++|.+.+
T Consensus 286 -----------------~--~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i 346 (444)
T COG1160 286 -----------------E--EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAI 346 (444)
T ss_pred -----------------H--HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHH
Confidence 1 1258999999999998642 121 11 246789999999999999999988
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+..
T Consensus 347 ~~~~ 350 (444)
T COG1160 347 KEIY 350 (444)
T ss_pred HHHH
Confidence 7754
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-19 Score=155.89 Aligned_cols=193 Identities=27% Similarity=0.359 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE
Q 021103 27 LGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY 106 (317)
Q Consensus 27 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~ 106 (317)
+.+++++++++++++......+.+++.. ....+-.+++|+|++|||||||+|.|++....+.+++++|.++..+.+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~ 85 (204)
T cd01878 8 RRLIRERIAKLRRELEKVKKQRELQRRR--RKRSGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRL 85 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHh--hhhcCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEe
Confidence 4455566666665544433222211111 11223468999999999999999999998766788899999999999988
Q ss_pred CCe-eEEEecCCCccccccCCc-hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceee
Q 021103 107 NDT-KIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKT 184 (317)
Q Consensus 107 ~g~-~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr 184 (317)
.+. ++.++||||+.+...... .........+..+|.+++++|+..+..... ...+
T Consensus 86 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~-~~~~---------------------- 142 (204)
T cd01878 86 PDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQ-IETV---------------------- 142 (204)
T ss_pred cCCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhH-HHHH----------------------
Confidence 776 899999999864322211 111122233567899999998765422111 1100
Q ss_pred eeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh--cC
Q 021103 185 GGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA--RQ 262 (317)
Q Consensus 185 ~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~--~~ 262 (317)
..++..+ . ....|+++|+||+|+.......... ..
T Consensus 143 -------------------~~~l~~~----------------------~--~~~~~viiV~NK~Dl~~~~~~~~~~~~~~ 179 (204)
T cd01878 143 -------------------EKVLKEL----------------------G--AEDIPMILVLNKIDLLDDEELEERLEAGR 179 (204)
T ss_pred -------------------HHHHHHc----------------------C--cCCCCEEEEEEccccCChHHHHHHhhcCC
Confidence 1111111 0 0137999999999997654333111 23
Q ss_pred CCeEEEeccccccHHHHHHHHHHHh
Q 021103 263 PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 263 ~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
..++.+||+++.|++++.+.|.+.+
T Consensus 180 ~~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 180 PDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CceEEEEcCCCCCHHHHHHHHHhhC
Confidence 4688999999999999999887653
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.7e-21 Score=160.42 Aligned_cols=155 Identities=17% Similarity=0.132 Sum_probs=107.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-H
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-G 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~ 130 (317)
..+++|....|+.+.|.||||+||||||++|+|+..| .+|+|+|+|.++.... +......-+ +
T Consensus 18 f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p-----------~~G~v~~~~~~i~~~~-----~~~~~~l~yLG 81 (209)
T COG4133 18 FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRP-----------DAGEVYWQGEPIQNVR-----ESYHQALLYLG 81 (209)
T ss_pred ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCC-----------CCCeEEecCCCCccch-----hhHHHHHHHhh
Confidence 3578899999999999999999999999999999998 9999999987764321 000000000 0
Q ss_pred HHH--HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQV--IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~--~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.+. -..+...+++-|..+.... .....+.+.++.+|+ ..+.++.+||-||++|+++| .++|||+++
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~-~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~ta 160 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGS-GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTA 160 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCC-CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccc
Confidence 000 0011112222222221211 234568889999999 78999999999999999999 899999999
Q ss_pred CCHHHHHHHHHHhc----ccCcEEEecCCC
Q 021103 198 VDEKLCYQILHEYK----IHNAEVLFREDA 223 (317)
Q Consensus 198 LD~~~~~~~l~~l~----~~~~~i~~shd~ 223 (317)
||.+.+..+-..+. ..+.++..||.+
T Consensus 161 LDk~g~a~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 161 LDKEGVALLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred cCHHHHHHHHHHHHHHhcCCCEEEEecCCc
Confidence 99987655444443 345788889974
|
|
| >cd01898 Obg Obg subfamily | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.3e-19 Score=149.72 Aligned_cols=161 Identities=30% Similarity=0.464 Sum_probs=111.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.|+|+|++|||||||+|+|++....++++|++|+++..|.+.+++. .+.++||||+.........+...+...+..+|.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ 81 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRL 81 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHHHHHhCCE
Confidence 5899999999999999999998777889999999999999998887 899999999854322221223344445567999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|+.......+.+..+.+.+ ...
T Consensus 82 vi~v~D~~~~~~~~~~~~~~~~~l-----------------------------------------~~~------------ 108 (170)
T cd01898 82 LLHVIDLSGDDDPVEDYKTIRNEL-----------------------------------------ELY------------ 108 (170)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHH-----------------------------------------HHh------------
Confidence 999999875411111111111110 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHHh-c--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA-R--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l~-~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......+|.++|+||+|+...... .... . ...++++||+++.|++++.+.|.+.+
T Consensus 109 ----------~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~ 170 (170)
T cd01898 109 ----------NPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL 170 (170)
T ss_pred ----------CccccccccEEEEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence 000124799999999999754332 2222 2 34588999999999999999987653
|
The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-21 Score=189.16 Aligned_cols=170 Identities=13% Similarity=0.150 Sum_probs=111.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++..|
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 399 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPP-----------TSGSVRLDGADLKQWDRETF----GKHIGYLPQ 399 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEehhhCCHHHH----hhheEEecC
Confidence 578899999999999999999999999999999988 89999999987654332111 111122222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHH---------HHHHHHc--cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQIL---------TKELEAV--GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~---------~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... ....+.+ .+.++.+ |+ ........|||||+||+++|
T Consensus 400 ~~~lf~~ti~~Ni~~~~~----~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~i 475 (544)
T TIGR01842 400 DVELFPGTVAENIARFGE----NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKL 475 (544)
T ss_pred CcccccccHHHHHhccCC----CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2111111 222221111 0111122 2334444 33 34556788999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc----ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~----~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||.+....+.+.+. ...++|++||+....+.+ ..++++++.-+.
T Consensus 476 lilDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~----------d~i~~l~~G~i~ 532 (544)
T TIGR01842 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCV----------DKILVLQDGRIA 532 (544)
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 99999999999998776666554 234999999997544333 346677665443
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.9e-21 Score=172.94 Aligned_cols=188 Identities=20% Similarity=0.202 Sum_probs=127.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
++++++...|+.+||||.+|||||||=.+|.++..+ .|.|.|.|.++.-.+-....+ .+.....++|
T Consensus 304 d~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s------------~G~I~F~G~~i~~~~~~~mrp-lR~~mQvVFQ 370 (534)
T COG4172 304 DGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPS------------QGEIRFDGQDIDGLSRKEMRP-LRRRMQVVFQ 370 (534)
T ss_pred ccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCc------------CceEEECCccccccChhhhhh-hhhhceEEEe
Confidence 678888899999999999999999999999999876 599999998775433221111 1111111112
Q ss_pred HHh--hhcc---CcEEE---EEec-CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIA--VSKS---SDIVL---MVLD-ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~--~~~~---~d~i~---~v~~-~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
... .-+. .+++. .+-. .....+..+++.+.|+.+|+ ..+++|.++||||+||.+|| +++
T Consensus 371 DPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~L 450 (534)
T COG4172 371 DPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILL 450 (534)
T ss_pred CCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEe
Confidence 110 0000 11111 1111 11223345678899999999 68899999999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHH---hcc-cC-cEEEecCCCChhh-HHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 192 TLPLTHVDEKLCYQILHE---YKI-HN-AEVLFREDATVDD-LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~---l~~-~~-~~i~~shd~~~~~-~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
|||||.||.....++++. ++. .+ +.+++|||..+.+ +| ..++|+-..-++..+..+.+...+
T Consensus 451 DEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~----------~~viVm~~GkiVE~G~~~~if~~P 518 (534)
T COG4172 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALC----------HRVIVMRDGKIVEQGPTEAVFANP 518 (534)
T ss_pred cCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhh----------ceEEEEeCCEEeeeCCHHHHhcCC
Confidence 999999999876555554 443 34 8999999966543 33 347788888777666555555433
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-21 Score=190.03 Aligned_cols=170 Identities=14% Similarity=0.107 Sum_probs=113.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|++++|+|+||||||||+++|+|...| .+|.|.++|.++..++...+ +...++.+|
T Consensus 357 ~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----~~~i~~~~Q 421 (576)
T TIGR02204 357 DGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDP-----------QSGRILLDGVDLRQLDPAEL----RARMALVPQ 421 (576)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCC-----------CCCEEEECCEEHHhcCHHHH----HHhceEEcc
Confidence 578899999999999999999999999999999988 89999999987754432111 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+.. +....+.+.+.++..++ ........|||||+||+++|
T Consensus 422 ~~~lf~~Ti~~Ni~~~~----~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~i 497 (576)
T TIGR02204 422 DPVLFAASVMENIRYGR----PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPI 497 (576)
T ss_pred CCccccccHHHHHhcCC----CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCe
Confidence 2222221 23332211 11122345555555543 22334567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.+...+.+.+. ...++|++||+......+ ..+++++..-+.
T Consensus 498 lilDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~----------d~vi~l~~g~~~ 553 (576)
T TIGR02204 498 LLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA----------DRIVVMDQGRIV 553 (576)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhC----------CEEEEEECCEEE
Confidence 89999999999998666655554 335999999997655433 345566554433
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG1084 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=160.88 Aligned_cols=159 Identities=26% Similarity=0.387 Sum_probs=118.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhcc-
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS- 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~- 139 (317)
...+.|.|+||+|||||+++|++..+.+++|||||....-|.+..++..++.+||||+.+....... ...|....+++
T Consensus 168 ~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl 247 (346)
T COG1084 168 LPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHL 247 (346)
T ss_pred CCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999999999999999999999999875443322 23344444444
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
.++++|++|.+.. .|...+....++++++
T Consensus 248 ~~~IlF~~D~Se~-------------------------------------------cgy~lE~Q~~L~~eIk-------- 276 (346)
T COG1084 248 AGVILFLFDPSET-------------------------------------------CGYSLEEQISLLEEIK-------- 276 (346)
T ss_pred cCeEEEEEcCccc-------------------------------------------cCCCHHHHHHHHHHHH--------
Confidence 7888899887532 2233333334444332
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc------CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR------QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~------~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ...|+++|+||+|+...+.++++.. ....+.+|+..+.+++.+.+.+...
T Consensus 277 --------------~~-f~~p~v~V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 277 --------------EL-FKAPIVVVINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred --------------Hh-cCCCeEEEEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence 11 1378999999999997776654321 2335678999999999998888765
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-21 Score=193.75 Aligned_cols=172 Identities=11% Similarity=0.090 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++...++ ...+++.|
T Consensus 474 ~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p-----------~~G~I~idg~~i~~~~~~~~r----~~i~~v~q 538 (694)
T TIGR01846 474 SNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTP-----------QHGQVLVDGVDLAIADPAWLR----RQMGVVLQ 538 (694)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCEehhhCCHHHHH----HhCeEEcc
Confidence 578899999999999999999999999999999988 899999999987654422111 11122222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .......+|||||+||+++|
T Consensus 539 ~~~lf~~ti~eNi~~~----~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~i 614 (694)
T TIGR01846 539 ENVLFSRSIRDNIALC----NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRI 614 (694)
T ss_pred CCeehhhhHHHHHhcC----CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2111111 2222221 111122334444444433 23445678999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+++||||++||+.+...+.+.+. ...|+|++||+......+ ..++++++.-+...
T Consensus 615 lilDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~----------d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 615 LIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC----------DRIIVLEKGQIAES 672 (694)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhC----------CEEEEEeCCEEEEe
Confidence 99999999999998777766664 235999999997544433 44677776655433
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.1e-21 Score=189.53 Aligned_cols=158 Identities=18% Similarity=0.169 Sum_probs=108.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+|+|+|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 339 ~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-----------~~G~I~~~g~~i~~~~~~~l----r~~i~~v~Q 403 (529)
T TIGR02857 339 RPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP-----------TEGSIAVNGVPLADADADSW----RDQIAWVPQ 403 (529)
T ss_pred cceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEehhhCCHHHH----HhheEEEcC
Confidence 578899999999999999999999999999999988 89999999988765442211 111222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ .......+|||||+||+++|
T Consensus 404 ~~~lf~~ti~~Ni~~~~----~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~i 479 (529)
T TIGR02857 404 HPFLFAGTIAENIRLAR----PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPL 479 (529)
T ss_pred CCcccCcCHHHHHhccC----CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 2222211 22222211 11122345555555554 22334568999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLI 229 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~ 229 (317)
+++||||++||+++...+.+.+.. ..|+|++||+......+
T Consensus 480 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~ 523 (529)
T TIGR02857 480 LLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERA 523 (529)
T ss_pred EEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhC
Confidence 999999999999987777666653 34999999997544433
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=162.96 Aligned_cols=143 Identities=17% Similarity=0.232 Sum_probs=95.7
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~ 130 (317)
-.++++.+.+|++++|+|+||||||||+++|+|...| .+|.|.++| .+.++ +.+.+..
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-----------~~G~i~~~g-~i~~~~q~~~l~~--------- 79 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEK-----------LSGSVSVPG-SIAYVSQEPWIQN--------- 79 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCCeEEEcC-EEEEEecCchhcc---------
Confidence 3578899999999999999999999999999999887 899999988 44333 1221110
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+++.+.... .. ....+.++.+++ .....+..||+||+||+++|
T Consensus 80 ------~t~~enl~~~~~~-~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l 148 (204)
T cd03250 80 ------GTIRENILFGKPF-DE----ERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI 148 (204)
T ss_pred ------CcHHHHhccCCCc-CH----HHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 0011111111110 11 111122222221 24556789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHH----hccc-CcEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHE----YKIH-NAEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~----l~~~-~~~i~~shd~~~~ 226 (317)
+++||||++||+.....+++. +... .++|++||+....
T Consensus 149 lllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~ 191 (204)
T cd03250 149 YLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLL 191 (204)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHH
Confidence 999999999999986665543 3233 4899999996543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=153.74 Aligned_cols=176 Identities=20% Similarity=0.195 Sum_probs=118.2
Q ss_pred CCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCcccccc-----C
Q 021103 51 AGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-----E 125 (317)
Q Consensus 51 ~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~-----~ 125 (317)
+-.+++|...+|+..+|+|.+|+|||||+++|++...| +.|.+.+....=...|.-...+..+ .
T Consensus 21 gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p-----------~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTP-----------DAGTVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCC-----------CCCeEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 34688999999999999999999999999999999988 8899887532211122111111000 0
Q ss_pred CchhHHHHHhhhccCcEEEEEecCC-------------CchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDAS-------------KSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS- 188 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~-------------~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia- 188 (317)
..+.+.|. ..|-+-.-+.+. .-....+.+.++|+.+.+ ..+..|..+|||++||+.||
T Consensus 90 eWG~VhQn-----P~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 90 EWGFVHQN-----PRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred ccceeecC-----ccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 01111111 123232222211 111123456788999998 78889999999999999998
Q ss_pred --------eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --------FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --------lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||.+||......+++.+. ..+ +++++|||..+.++.. ..+.|+...+.+
T Consensus 165 nLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla---------~rlmvmk~g~vv 231 (258)
T COG4107 165 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLA---------DRLMVMKQGQVV 231 (258)
T ss_pred HhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhh---------hcceeecCCCEe
Confidence 89999999999988777766664 234 8999999988887653 235566555544
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=186.19 Aligned_cols=164 Identities=11% Similarity=0.019 Sum_probs=111.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+||||||||||+++|+|...| .+|.|.++|.++...+...+ +...+++.|
T Consensus 359 ~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p-----------~~G~i~~~g~~i~~~~~~~~----~~~i~~v~q 423 (555)
T TIGR01194 359 GPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP-----------QEGEILLDGAAVSADSRDDY----RDLFSAIFA 423 (555)
T ss_pred ccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCHHHH----HhhCcEEcc
Confidence 458899999999999999999999999999999988 89999999987643321111 111222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccc------cCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNK------RPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~------~~~~LS~g~~qr~~ia---------lilDE 193 (317)
....+.. .++ ..+....+.+.++++.+++ .... ....|||||+||+++| +++||
T Consensus 424 ~~~lf~~ti~~n-------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE 496 (555)
T TIGR01194 424 DFHLFDDLIGPD-------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDE 496 (555)
T ss_pred Chhhhhhhhhcc-------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 2222211 111 0122234557778888887 2221 2367999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh----c-ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 194 PLTHVDEKLCYQILHEY----K-IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l----~-~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
||++||+++...+.+.+ . ...++|++||+....+.+ ..++++++.
T Consensus 497 ~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~----------d~i~~l~~G 546 (555)
T TIGR01194 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA----------DQIIKLAAG 546 (555)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC----------CEEEEEECC
Confidence 99999999877665433 2 245999999996544333 446666654
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-21 Score=188.29 Aligned_cols=167 Identities=14% Similarity=0.010 Sum_probs=112.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+...+ +...++..|
T Consensus 340 ~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 404 (547)
T PRK10522 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVTAEQPEDY----RKLFSAVFT 404 (547)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEECCCCCHHHH----hhheEEEec
Confidence 577888899999999999999999999999999988 89999999987643321111 111222222
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--ccccc-----CCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR-----PPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~-----~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+... + .+. ......+.+.+.++.+++ ..... -.+|||||+||+++| +++||||+
T Consensus 405 ~~~lf~~t--i---~~n-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts 478 (547)
T PRK10522 405 DFHLFDQL--L---GPE-GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAA 478 (547)
T ss_pred ChhHHHHh--h---ccc-cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 22112110 0 000 112234456778888877 22111 358999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc----c-cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 197 HVDEKLCYQILHEYK----I-HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~-~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
+||+++...+.+.+. . ..++|++||+...... ...++++++..+
T Consensus 479 ~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i 527 (547)
T PRK10522 479 DQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIH----------ADRLLEMRNGQL 527 (547)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHh----------CCEEEEEECCEE
Confidence 999998776655543 2 3599999999654433 344666665543
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.82 E-value=6e-21 Score=170.64 Aligned_cols=160 Identities=11% Similarity=-0.032 Sum_probs=99.0
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|++++|+|+||||||||+++|+|..++ .+|.|.++|.++.-.+..- .....++.+
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-----------~~G~i~i~g~~i~~~~~~~----~~~~i~~v~ 101 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDI-----------FDGKIVIDGIDISKLPLHT----LRSRLSIIL 101 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCC-----------CCCeEEECCEEhhhCCHHH----HhhhEEEEC
Confidence 3678899999999999999999999999999999887 8999999997653221100 001111111
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHH-----HHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQ-----ILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
|....+. ..+.+... .......... .+.+.++.+ ++ .....+..||+||+||+++| +++
T Consensus 102 q~~~l~~~tv~~nl~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llll 180 (257)
T cd03288 102 QDPILFSGSIRFNLDPE-CKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIM 180 (257)
T ss_pred CCCcccccHHHHhcCcC-CCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 1110000 00111000 0000000000 112233333 33 34456789999999999988 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 192 TLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
||||++||+.....+.+.+. ...++|++||+.....
T Consensus 181 DEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~ 219 (257)
T cd03288 181 DEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTIL 219 (257)
T ss_pred eCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHH
Confidence 99999999998665554443 3349999999966543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.4e-21 Score=162.81 Aligned_cols=165 Identities=19% Similarity=0.110 Sum_probs=113.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+..+|+||||||||||.++|+|.... .+++|.|.++|.+|.-+++. ..++.++...+|
T Consensus 21 kgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y---------~Vt~G~I~~~GedI~~l~~~---ERAr~GifLafQ 88 (251)
T COG0396 21 KGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKY---------EVTEGEILFDGEDILELSPD---ERARAGIFLAFQ 88 (251)
T ss_pred cCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCc---------eEecceEEECCcccccCCHh---HHHhcCCEEeec
Confidence 467788888999999999999999999999998753 33899999999998654321 223334444444
Q ss_pred HHhhhccCcEEEEEe---cCCC-----chhhHHHHHHHHHHccc---cccccC-CcccccceeeeeeE---------eee
Q 021103 133 VIAVSKSSDIVLMVL---DASK-----SEGHRQILTKELEAVGL---RLNKRP-PQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~---~~~~-----~~~~~~~~~~~L~~~~l---~~~~~~-~~LS~g~~qr~~ia---------lil 191 (317)
....++...+..|+. .... .......+++.++.+++ .+++.+ ..+|||+|+|..|+ .++
T Consensus 89 ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~IL 168 (251)
T COG0396 89 YPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAIL 168 (251)
T ss_pred CCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEe
Confidence 443333222211111 1100 11234567788888888 456655 36999999999876 899
Q ss_pred cCCCCCCCHHHHH---HHHHHhcccC-cEEEecCCCChhhHH
Q 021103 192 TLPLTHVDEKLCY---QILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 192 DEPt~~LD~~~~~---~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
|||-||||.++.+ +.++.+...+ +++++||...+.+.+
T Consensus 169 DE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i 210 (251)
T COG0396 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210 (251)
T ss_pred cCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhc
Confidence 9999999998854 4566666544 999999987655543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-21 Score=188.53 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=112.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++++|+|+||||||||+++|+|...| .+|.|.++|.++...+...+ +...++..|
T Consensus 332 ~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-----------~~G~i~~~g~~~~~~~~~~~----~~~i~~v~q 396 (569)
T PRK10789 332 ENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDV-----------SEGDIRFHDIPLTKLQLDSW----RSRLAVVSQ 396 (569)
T ss_pred cCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CCCEEEECCEEHhhCCHHHH----HhheEEEcc
Confidence 578889999999999999999999999999999988 89999999987643321111 111111122
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++..++ ........|||||+||+++|
T Consensus 397 ~~~lf~~ti~~Ni~~~~----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i 472 (569)
T PRK10789 397 TPFLFSDTVANNIALGR----PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEI 472 (569)
T ss_pred CCeeccccHHHHHhcCC----CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 12222111 11122233444444333 23345578999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++||||++||++....+++.+. ...|+|++||+...... ...++++.+..+...+.
T Consensus 473 lllDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~----------~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 473 LILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTE----------ASEILVMQHGHIAQRGN 532 (569)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHc----------CCEEEEEeCCEEEEecC
Confidence 99999999999998776666554 33599999999754332 34567777665544333
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7e-21 Score=188.49 Aligned_cols=179 Identities=14% Similarity=0.136 Sum_probs=118.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++..++|+++||+||+|||||||+|.|++...| .+|.|.++|.++.-++...++ ...+.+.|
T Consensus 346 ~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-----------~~G~I~idg~dI~~i~~~~lr----~~I~~V~Q 410 (567)
T COG1132 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-----------TSGEILIDGIDIRDISLDSLR----KRIGIVSQ 410 (567)
T ss_pred cCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-----------CCCeEEECCEehhhcCHHHHH----HhccEEcc
Confidence 578999999999999999999999999999999988 899999999988655432221 11222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+.+.++.. |+ .....-..||||||||+++|
T Consensus 411 d~~LF~~TI~~NI~~g~----~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~I 486 (567)
T COG1132 411 DPLLFSGTIRENIALGR----PDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPI 486 (567)
T ss_pred cceeecccHHHHHhcCC----CCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 2222221 22222221 111122333333333 23 34445568999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||.++...+.+.+. ...|+++++|...... ....|+|+++.-+...+..+++.
T Consensus 487 LILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~----------~aD~IiVl~~G~i~e~G~h~eLl 551 (567)
T COG1132 487 LILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIK----------NADRIIVLDNGRIVERGTHEELL 551 (567)
T ss_pred EEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHH----------hCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999998666655553 3348999999954332 24568888888766555444443
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-21 Score=191.82 Aligned_cols=167 Identities=17% Similarity=0.198 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|++++|+|+||||||||+++|+|..+| .+|.+.++|.++...+...+........++.+|
T Consensus 25 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~-----------~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q 93 (648)
T PRK10535 25 KGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKP-----------TSGTYRVAGQDVATLDADALAQLRREHFGFIFQ 93 (648)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEcCcCCHHHHHHHHhccEEEEeC
Confidence 578899999999999999999999999999999988 899999999875432110000000011111112
Q ss_pred HHhhhcc---CcEEEEEe-c-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL-D-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~-~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.. . ..........+.++++.+++ ..++.+..||+||+||+.+| +++||||+
T Consensus 94 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~ 173 (648)
T PRK10535 94 RYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTG 173 (648)
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 1111111 11111100 0 11112234467788999998 67889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH---hccc-CcEEEecCCCChhhHHH
Q 021103 197 HVDEKLCYQILHE---YKIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~-~~~i~~shd~~~~~~~~ 230 (317)
+||+.....+.+. +... .+++++||+.+..+.||
T Consensus 174 gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d 211 (648)
T PRK10535 174 ALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAE 211 (648)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCC
Confidence 9999986655444 4333 49999999976555443
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=160.90 Aligned_cols=137 Identities=19% Similarity=0.184 Sum_probs=89.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|... + .+|++.++|.++. . ......++.
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~-----------~~G~i~~~g~~~~--~------~~~~~i~~~ 84 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGV-----------ITGEILINGRPLD--K------NFQRSTGYV 84 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCC-----------cceEEEECCEehH--H------HhhhceEEe
Confidence 57788989999999999999999999999999853 4 7899999987652 0 000011111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.| ... + .. ... +.+.+.. .... ..||+||+||+.+| +++||||++||+.
T Consensus 85 ~q------~~~-~---~~---~~t----v~~~l~~-~~~~----~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~ 142 (192)
T cd03232 85 EQ------QDV-H---SP---NLT----VREALRF-SALL----RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142 (192)
T ss_pred cc------cCc-c---cc---CCc----HHHHHHH-HHHH----hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHH
Confidence 11 000 0 00 000 1111110 0000 18999999999988 8999999999999
Q ss_pred HHHHHHHHh---ccc-CcEEEecCCCC--hhhHHH
Q 021103 202 LCYQILHEY---KIH-NAEVLFREDAT--VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~-~~~i~~shd~~--~~~~~~ 230 (317)
....+++.+ ... .++|++||+.+ +...+|
T Consensus 143 ~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d 177 (192)
T cd03232 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFD 177 (192)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCC
Confidence 866555544 333 49999999975 244443
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-21 Score=167.02 Aligned_cols=150 Identities=19% Similarity=0.114 Sum_probs=93.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+|+||||||||+++|+|...+. .|.+|.|.++|.++...+ .......++..+
T Consensus 24 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~--------~~~~G~i~i~g~~~~~~~-----~~~~~~i~~~~q 90 (202)
T cd03233 24 KDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGN--------VSVEGDIHYNGIPYKEFA-----EKYPGEIIYVSE 90 (202)
T ss_pred eeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCC--------CCcceEEEECCEECccch-----hhhcceEEEEec
Confidence 5788999999999999999999999999999998720 127999999987653211 000111111111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
.... .....-.+.+.-.. . ...++++..||+||+||+.+| +++||||++||+...
T Consensus 91 ~~~~-------------~~~~tv~~~l~~~~-~--~~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~ 154 (202)
T cd03233 91 EDVH-------------FPTLTVRETLDFAL-R--CKGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTA 154 (202)
T ss_pred cccc-------------CCCCcHHHHHhhhh-h--hccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHH
Confidence 0000 00000011111000 0 015678899999999999988 999999999999986
Q ss_pred HHHHHHh---ccc-C-cEEEe-cCC-CChhhHHHH
Q 021103 204 YQILHEY---KIH-N-AEVLF-RED-ATVDDLIDV 231 (317)
Q Consensus 204 ~~~l~~l---~~~-~-~~i~~-shd-~~~~~~~~~ 231 (317)
..+.+.+ ... + +++++ +|+ ..+.+++|+
T Consensus 155 ~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~ 189 (202)
T cd03233 155 LEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDK 189 (202)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCe
Confidence 5554444 332 3 55555 454 345555543
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.9e-21 Score=179.28 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=117.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++++.|++|||+|+|||||||++|+|.+... .+|.|.++|.++.-++..+++ ..++.++|
T Consensus 369 ~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d------------~sG~I~IdG~dik~~~~~SlR----~~Ig~VPQ 432 (591)
T KOG0057|consen 369 KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD------------YSGSILIDGQDIKEVSLESLR----QSIGVVPQ 432 (591)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc------------cCCcEEECCeeHhhhChHHhh----hheeEeCC
Confidence 57888999999999999999999999999999875 589999999988765543322 12223333
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
...++.+ .++..+..+ .+....+.+.+..+++++ ....+-..||||||||+.++ ++
T Consensus 433 d~~LFnd-TIl~NI~YG-n~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~ 510 (591)
T KOG0057|consen 433 DSVLFND-TILYNIKYG-NPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510 (591)
T ss_pred cccccch-hHHHHhhcC-CCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEE
Confidence 2222211 011111111 122233456666666666 23345568999999999998 89
Q ss_pred ecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 191 STLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+|||||+||.++-.++++.+.. ..|+|++-|+.+...-+ ..|+++.+.-..
T Consensus 511 ~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~----------DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 511 LDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDF----------DKIIVLDNGTVK 564 (591)
T ss_pred ecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcC----------CEEEEEECCeeE
Confidence 9999999999998888887753 34999999997665543 346666555433
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-21 Score=172.79 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=126.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.+++|.+..|+.+||||.+|||||-..+.++++++. .+.+ -+|.|.|+|.++.......+..-....+++.+
T Consensus 27 k~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~-------~sg~i~f~G~dll~~se~~lr~iRG~~I~MIF 99 (534)
T COG4172 27 KGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAH-------PSGSILFDGEDLLAASERQLRGVRGNKIGMIF 99 (534)
T ss_pred ccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccC-------ccceeEEcChhhhcCCHHHHhhhcccceEEEe
Confidence 578888899999999999999999999999999863 2111 47899999987643322111111111122222
Q ss_pred HHHhhh-c--------cCcEEEEEecCCCchhhHHHHHHHHHHccc-----cccccCCcccccceeeeeeE---------
Q 021103 132 QVIAVS-K--------SSDIVLMVLDASKSEGHRQILTKELEAVGL-----RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 132 ~~~~~~-~--------~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
|..... . -++.+.+. ..........++.++|+.+|+ .++.+|.+|||||+||+.||
T Consensus 100 QEPMtSLNPl~tIg~Qi~E~l~~H-rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~l 178 (534)
T COG4172 100 QEPMTSLNPLHTIGKQLAEVLRLH-RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178 (534)
T ss_pred cccccccCcHhHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCe
Confidence 211100 0 00000000 111223455678899999999 68899999999999999988
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+|+||||+.||.....++|+.+ + ..+ +++++|||..+-+-+ ...+.|+.+..++..+..+.+
T Consensus 179 LIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~---------ADrV~VM~~G~ivE~~~t~~l 245 (534)
T COG4172 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKF---------ADRVYVMQHGEIVETGTTETL 245 (534)
T ss_pred EeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHh---------hhhEEEEeccEEeecCcHHHH
Confidence 9999999999988766655555 4 235 999999996644321 345789999998866554443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-20 Score=192.20 Aligned_cols=177 Identities=16% Similarity=0.138 Sum_probs=121.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.++.|+.+||||++||||||+++.|.+.+.| .+|.|.++|.++.-++.+-++ ..++.+.|
T Consensus 370 ~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP-----------~~G~V~idG~di~~~~~~~lr----~~iglV~Q 434 (1228)
T KOG0055|consen 370 KGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP-----------TSGEVLIDGEDIRNLNLKWLR----SQIGLVSQ 434 (1228)
T ss_pred CCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCceEEEcCccchhcchHHHH----hhcCeeee
Confidence 678999999999999999999999999999999988 999999999998776654332 23344444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHH-------------ccccccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEA-------------VGLRLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~-------------~~l~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.+-.+.. .+++.+.. ++...+.+.+..+. ++-.....-.+||||||||++||
T Consensus 435 ePvlF~~tI~eNI~~G~----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I 510 (1228)
T KOG0055|consen 435 EPVLFATTIRENIRYGK----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI 510 (1228)
T ss_pred chhhhcccHHHHHhcCC----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE
Confidence 4322221 33333322 11112222222222 12244455667999999999999
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
|++||||++||+++ +++.|+....+.|.|+++|+..--+ +...|+|+.+.-++..+.-++
T Consensus 511 LLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIr----------naD~I~v~~~G~IvE~G~h~E 573 (1228)
T KOG0055|consen 511 LLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIR----------NADKIAVMEEGKIVEQGTHDE 573 (1228)
T ss_pred EEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhh----------ccCEEEEEECCEEEEecCHHH
Confidence 99999999999987 4555665566679999999844322 356788888887765443333
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.8e-21 Score=192.23 Aligned_cols=159 Identities=18% Similarity=0.182 Sum_probs=102.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE-----------ECCeeEEEecC---CC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH-----------YNDTKIQLLDL---PG 118 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~-----------~~g~~i~~~d~---~g 118 (317)
.+++ ...+|+++||+||||||||||+++|+|...| +.|.|. ++|.++.-... .+
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p-----------~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 3455 5778999999999999999999999999988 888886 66654321000 00
Q ss_pred ccccccCCchhHHHHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE------
Q 021103 119 IIEGASEGKGRGRQVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------ 188 (317)
-.. .....++..+....+. ..+++. .......+.++++.+++ ..++++.+|||||+||++||
T Consensus 159 ~~~-~~~~~q~~~~~p~~~~~tv~e~l~-------~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~ 230 (590)
T PRK13409 159 EIK-VVHKPQYVDLIPKVFKGKVRELLK-------KVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRD 230 (590)
T ss_pred Ccc-eeecccchhhhhhhhcchHHHHHH-------hhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 000 0000000111100000 000000 01123467788999999 57899999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCC-hhhHHHH
Q 021103 189 ---FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~-~~~~~~~ 231 (317)
+++||||++||+.....+.+ .+....++|++|||.+ ++.++|+
T Consensus 231 p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~ 280 (590)
T PRK13409 231 ADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADN 280 (590)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCE
Confidence 99999999999998655544 4434348999999954 4444443
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.7e-20 Score=159.52 Aligned_cols=138 Identities=17% Similarity=0.132 Sum_probs=91.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+|+||||||||+++|+|.. .| .+|.|.++|.++... ......++.
T Consensus 26 ~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~-----------~~G~i~~~g~~~~~~-------~~~~~i~~~ 87 (194)
T cd03213 26 KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG-----------VSGEVLINGRPLDKR-------SFRKIIGYV 87 (194)
T ss_pred ecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEeCchH-------hhhheEEEc
Confidence 5788899999999999999999999999999998 77 889999998765310 000111111
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHH
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK 201 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~ 201 (317)
.+ .... .....-.+.+. +.. ....||+||+||+.+| +++||||++||+.
T Consensus 88 ~q------~~~~-------~~~~t~~~~i~-~~~--------~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~ 145 (194)
T cd03213 88 PQ------DDIL-------HPTLTVRETLM-FAA--------KLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSS 145 (194)
T ss_pred cC------cccC-------CCCCcHHHHHH-HHH--------HhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHH
Confidence 11 1000 00000011111 000 0118999999999988 8999999999999
Q ss_pred HHHHHHHHh---cccC-cEEEecCCCC--hhhHHH
Q 021103 202 LCYQILHEY---KIHN-AEVLFREDAT--VDDLID 230 (317)
Q Consensus 202 ~~~~~l~~l---~~~~-~~i~~shd~~--~~~~~~ 230 (317)
....+.+.+ ...+ ++|++||+.. +.+.+|
T Consensus 146 ~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d 180 (194)
T cd03213 146 SALQVMSLLRRLADTGRTIICSIHQPSSEIFELFD 180 (194)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcC
Confidence 866555544 3333 9999999964 444444
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-20 Score=189.17 Aligned_cols=154 Identities=14% Similarity=0.064 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|++++|+||||||||||+++|+|..++ ..|.+.+++. .+.++.. |.+.. + -.
T Consensus 469 ~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-----------~~G~i~~~~~~~i~~v~Q~~~l~~----~--tv 531 (659)
T TIGR00954 469 ESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPV-----------YGGRLTKPAKGKLFYVPQRPYMTL----G--TL 531 (659)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCeEeecCCCcEEEECCCCCCCC----c--CH
Confidence 578889999999999999999999999999999877 6788877543 2333321 11110 0 01
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--ccccc---------CCcccccceeeeeeE---------ee
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKR---------PPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~---------~~~LS~g~~qr~~ia---------li 190 (317)
.+... .... ..+........+.+.++++.+++ ..+++ ...|||||+||+++| ++
T Consensus 532 ~eni~---~~~~---~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 532 RDQII---YPDS---SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred HHHHh---cCCC---hhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 11110 0000 00000111123456777888887 23332 368999999999998 99
Q ss_pred ecCCCCCCCHHHHHHHHHHhcccC-cEEEecCCCChhhHH
Q 021103 191 STLPLTHVDEKLCYQILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 191 lDEPt~~LD~~~~~~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
+||||++||++....+.+.+...+ ++|++||+....+.+
T Consensus 606 LDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 606 LDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLWKYH 645 (659)
T ss_pred EeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHHHhC
Confidence 999999999999887777776545 899999997755443
|
|
| >COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=164.32 Aligned_cols=88 Identities=31% Similarity=0.603 Sum_probs=80.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC------------------eeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g------------------~~i~~~d~~g~~~~~~ 124 (317)
-.+||||.||+|||||||+||.....++||||||.+|..|.+++.+ .++.++|.+|+.+.++
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs 82 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGAS 82 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcc
Confidence 4789999999999999999999887789999999999999997742 2568999999999999
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCC
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+.+.+.++++.++.+|.+++|++.+
T Consensus 83 ~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 83 KGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cCCCcchHHHHhhhhcCeEEEEEEec
Confidence 99999999999999999999999865
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-20 Score=167.00 Aligned_cols=143 Identities=14% Similarity=0.151 Sum_probs=94.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|++++|+|+||||||||+++|+|..+| .+|.|.++|. +.++... .+.. .
T Consensus 54 ~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-----------~~G~I~i~g~-i~yv~q~~~l~~----~----- 112 (282)
T cd03291 54 KNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEP-----------SEGKIKHSGR-ISFSSQFSWIMP----G----- 112 (282)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCE-EEEEeCcccccc----c-----
Confidence 578888999999999999999999999999999888 8899999873 4333211 1100 0
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
.. .+.+.+.... .. ..+.+.++.+++ .....+..||+||+||+++| +
T Consensus 113 tv------~enl~~~~~~-~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iL 181 (282)
T cd03291 113 TI------KENIIFGVSY-DE----YRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLY 181 (282)
T ss_pred CH------HHHhhccccc-CH----HHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 00 1111111000 00 011122222222 12344679999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhh
Q 021103 190 NSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~ 227 (317)
++||||++||+.....+++. +....++|++||+.....
T Consensus 182 iLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~ 223 (282)
T cd03291 182 LLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK 223 (282)
T ss_pred EEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH
Confidence 99999999999986655543 333458999999966544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1 | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.3e-19 Score=148.08 Aligned_cols=162 Identities=35% Similarity=0.524 Sum_probs=109.9
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLM 145 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~ 145 (317)
|+|++|||||||+|+|+|....++++++||+++..|.+.++ +.++.++||||+............++...+..+|.+++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii~ 80 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAILH 80 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEEE
Confidence 58999999999999999987678899999999999999998 99999999999854332222222344555678999999
Q ss_pred EecCCCch-----hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 146 VLDASKSE-----GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 146 v~~~~~~~-----~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++|+.... ........+...+. .. ..
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~-~~-------- 111 (176)
T cd01881 81 VVDASEDDDIGGVDPLEDYEILNAELK----------------------------------------LY-DL-------- 111 (176)
T ss_pred EEeccCCccccccCHHHHHHHHHHHHH----------------------------------------Hh-hh--------
Confidence 99986542 11111111111100 00 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH-------hcCCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-------ARQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l-------~~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
..+......+|+++|+||+|+......... .....++++||+++.|++++.+.+...
T Consensus 112 ---------~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 112 ---------ETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ---------hhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence 000000124899999999999865443321 123468999999999999999988764
|
Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=144.34 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=113.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-++++++.+|+++.|+||+|||||||+.-+.|.+.+ -+ .+|++.++++++..+.+. ....+..+
T Consensus 19 a~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~---------~~G~~~l~~~~l~~lPa~------qRq~GiLF 83 (213)
T COG4136 19 ANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFS---------CTGELWLNEQRLDMLPAA------QRQIGILF 83 (213)
T ss_pred EeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcc---------eeeEEEECCeeccccchh------hhheeeee
Confidence 357888889999999999999999999999999865 22 689999999887655432 22233333
Q ss_pred HHHhhhc---cCcEEEEEecCC-CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 132 QVIAVSK---SSDIVLMVLDAS-KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 132 ~~~~~~~---~~d~i~~v~~~~-~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
|....++ ...++++.+... +.......+...|++.++ ..++.|.+|||||+-|+++. +++|||+|
T Consensus 84 QD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS 163 (213)
T COG4136 84 QDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFS 163 (213)
T ss_pred cccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchh
Confidence 4333333 345555554432 222344557788999999 78889999999999998765 89999999
Q ss_pred CCCHHHH----HHHHHHhcccC-cEEEecCCC
Q 021103 197 HVDEKLC----YQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 197 ~LD~~~~----~~~l~~l~~~~-~~i~~shd~ 223 (317)
.||.... .-+..+....+ ..+++|||.
T Consensus 164 ~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 164 RLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc
Confidence 9997653 33455555555 789999983
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.8e-19 Score=153.61 Aligned_cols=169 Identities=16% Similarity=0.149 Sum_probs=118.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
-.+++|++..|+++||||+||||||||++.|+|.++| ++|.+.++|.-..+++. .|+.+..
T Consensus 43 L~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-----------t~G~v~v~G~v~~li~lg~Gf~pel------- 104 (249)
T COG1134 43 LKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKP-----------TSGKVKVTGKVAPLIELGAGFDPEL------- 104 (249)
T ss_pred ecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCC-----------CCceEEEcceEehhhhcccCCCccc-------
Confidence 3688999999999999999999999999999999999 99999999875444442 2332211
Q ss_pred HHHHhhhccCcEEEEE--ecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 131 RQVIAVSKSSDIVLMV--LDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v--~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
...+++.+. +-+....+..+...+..+..++ ..+.++.++|-||+-|++++ |++||.++-
T Consensus 105 -------TGreNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlav 177 (249)
T COG1134 105 -------TGRENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAV 177 (249)
T ss_pred -------chHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhc
Confidence 111111111 1112233334455555555555 78999999999999999887 899999999
Q ss_pred CCHHHHHHH---HHHh-cccCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 198 VDEKLCYQI---LHEY-KIHNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 198 LD~~~~~~~---l~~l-~~~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
.|+.-.++. +.++ ....++|++|||.. +.++|| .++.+.|.-+...+.
T Consensus 178 GD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd----------~~i~l~~G~i~~~G~ 230 (249)
T COG1134 178 GDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCD----------RAIWLEHGQIRMEGS 230 (249)
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcC----------eeEEEeCCEEEEcCC
Confidence 999875554 4444 23459999999944 555554 467778876654433
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-20 Score=181.66 Aligned_cols=165 Identities=15% Similarity=0.137 Sum_probs=109.2
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+.+|+.++|+|||||||||||++|+|...+. ....|+|.++|.++...+ .+...++..
T Consensus 41 L~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~--------~~~~G~i~~~g~~~~~~~-------~~~~i~yv~ 105 (617)
T TIGR00955 41 LKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKG--------VKGSGSVLLNGMPIDAKE-------MRAISAYVQ 105 (617)
T ss_pred ccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCC--------CcceeEEEECCEECCHHH-------Hhhhceeec
Confidence 36889999999999999999999999999999987651 014799999998753110 001111111
Q ss_pred HHHhhh---ccCcEEEEEe--cC---CCchhhHHHHHHHHHHccc--cccccCC------cccccceeeeeeE-------
Q 021103 132 QVIAVS---KSSDIVLMVL--DA---SKSEGHRQILTKELEAVGL--RLNKRPP------QIYFKKKKTGGIS------- 188 (317)
Q Consensus 132 ~~~~~~---~~~d~i~~v~--~~---~~~~~~~~~~~~~L~~~~l--~~~~~~~------~LS~g~~qr~~ia------- 188 (317)
|....+ ...+.+.+.. +. .........+.+.++.+++ ..+..++ .||||||||+.+|
T Consensus 106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 111111 1111111111 10 0112334568889999998 4566665 5999999999998
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCC--hhhHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDAT--VDDLIDV 231 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~--~~~~~~~ 231 (317)
+++||||++||..+...+++.+. ..+ ++|+++|++. +.+.+|.
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~ 236 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDK 236 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhce
Confidence 89999999999998666655554 334 8999999964 4555554
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.7e-20 Score=198.47 Aligned_cols=178 Identities=13% Similarity=0.036 Sum_probs=119.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCC-C-----------------------------------------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEA-A----------------------------------------- 90 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v-~----------------------------------------- 90 (317)
.++++.+++|+++||||++|||||||+++|+|.+.|. +
T Consensus 1185 ~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1264 (1466)
T PTZ00265 1185 KDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEG 1264 (1466)
T ss_pred cCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccc
Confidence 5788999999999999999999999999999998762 1
Q ss_pred -ccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHcc
Q 021103 91 -SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVG 167 (317)
Q Consensus 91 -~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~ 167 (317)
.-+-+|+-|.+|.|.++|.++.-++...++ ..++++.|...++.. .+++.+.. +....+.+.++++..+
T Consensus 1265 ~~~~~~~~~~~~G~I~idG~di~~~~~~~lR----~~i~~V~Qep~LF~gTIreNI~~g~----~~at~eeI~~A~k~A~ 1336 (1466)
T PTZ00265 1265 GSGEDSTVFKNSGKILLDGVDICDYNLKDLR----NLFSIVSQEPMLFNMSIYENIKFGK----EDATREDVKRACKFAA 1336 (1466)
T ss_pred ccccccccCCCCCeEEECCEEHHhCCHHHHH----hhccEeCCCCccccccHHHHHhcCC----CCCCHHHHHHHHHHcC
Confidence 012345667899999999988665543222 223333443333321 33333321 1112234555555544
Q ss_pred c-------------cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhcc-----cCcEEEec
Q 021103 168 L-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKI-----HNAEVLFR 220 (317)
Q Consensus 168 l-------------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~-----~~~~i~~s 220 (317)
+ .....-..||||||||++|| |++||||++||.++.+.+.+.+.. ..|+|+++
T Consensus 1337 l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIa 1416 (1466)
T PTZ00265 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIA 1416 (1466)
T ss_pred CHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 3 22334567999999999999 999999999999986665555532 34999999
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecc
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKI 248 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~ 248 (317)
|+...-+. ...|+|+++.
T Consensus 1417 HRlsti~~----------aD~Ivvl~~~ 1434 (1466)
T PTZ00265 1417 HRIASIKR----------SDKIVVFNNP 1434 (1466)
T ss_pred chHHHHHh----------CCEEEEEeCC
Confidence 99644332 4568888773
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-20 Score=188.31 Aligned_cols=171 Identities=11% Similarity=-0.025 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc---cccc------
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI---IEGA------ 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~---~~~~------ 123 (317)
.++++.+..|+++||||+|||||||||++|+|.... + .|..|.|.+.+..+...++.-+ ....
T Consensus 194 ~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~-----g---~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~ 265 (718)
T PLN03073 194 VDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAID-----G---IPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQL 265 (718)
T ss_pred ECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC-----C---CCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHH
Confidence 677889999999999999999999999999997411 1 1356777654332211110000 0000
Q ss_pred -cCCchhHHHHHhhhcc--CcEEEEEe-cCCCc-------------------hhhHHHHHHHHHHccc---cccccCCcc
Q 021103 124 -SEGKGRGRQVIAVSKS--SDIVLMVL-DASKS-------------------EGHRQILTKELEAVGL---RLNKRPPQI 177 (317)
Q Consensus 124 -~~~~~~~~~~~~~~~~--~d~i~~v~-~~~~~-------------------~~~~~~~~~~L~~~~l---~~~~~~~~L 177 (317)
....++..+....... ........ ..... .....++..+|..+|+ ..++++.+|
T Consensus 266 ~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~L 345 (718)
T PLN03073 266 LEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTF 345 (718)
T ss_pred HHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCchhhC
Confidence 0001111111100000 00000000 00000 0123355667788888 367889999
Q ss_pred cccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 178 YFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 178 S~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
||||+||++|| +++||||++||+.....+.+.+... .++|++|||.. +..+|+.
T Consensus 346 SgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~ 410 (718)
T PLN03073 346 SGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTD 410 (718)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCE
Confidence 99999999998 9999999999999988887777654 59999999954 4444544
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-20 Score=197.29 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=120.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+.+.|
T Consensus 1253 ~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p-----------~~G~I~IdG~di~~i~~~~l----R~~i~iVpQ 1317 (1495)
T PLN03232 1253 HGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVEL-----------EKGRIMIDDCDVAKFGLTDL----RRVLSIIPQ 1317 (1495)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCceEEECCEEhhhCCHHHH----HhhcEEECC
Confidence 578899999999999999999999999999999988 89999999998765442211 112222223
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.. .. ....+.+.+.++..++ .....-.+||||||||++||
T Consensus 1318 dp~LF~gTIr~NL~~----~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1318 SPVLFSGTVRFNIDP----FS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred CCeeeCccHHHHcCC----CC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 2222211 122211 11 1223345666666554 22233468999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
+++||||++||.++...+.+.+. ...|+|+++|+...-. ....|+|+++.-+...+..+++.+
T Consensus 1393 LILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~----------~~DrIlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232 1393 LVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTII----------DCDKILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH----------hCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999998655555554 3459999999964332 245688998887765544444443
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-20 Score=150.87 Aligned_cols=115 Identities=20% Similarity=0.242 Sum_probs=85.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.++|+|+||+|||||+++|+|...+ ..|.+.++|.++...+ ..+
T Consensus 16 ~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~-----------~~G~i~~~~~~~~~~~--------------~~~ 70 (157)
T cd00267 16 DNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKP-----------TSGEILIDGKDIAKLP--------------LEE 70 (157)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CccEEEECCEEcccCC--------------HHH
Confidence 567888889999999999999999999999999877 8999999887542110 000
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
. . ..+.++ .+||+||+||+.++ +++||||++||....
T Consensus 71 ~----~--~~i~~~----------------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~ 116 (157)
T cd00267 71 L----R--RRIGYV----------------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASR 116 (157)
T ss_pred H----H--hceEEE----------------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHH
Confidence 0 0 001111 11899999999887 899999999999886
Q ss_pred HHHHHHhc---cc-CcEEEecCCCChh
Q 021103 204 YQILHEYK---IH-NAEVLFREDATVD 226 (317)
Q Consensus 204 ~~~l~~l~---~~-~~~i~~shd~~~~ 226 (317)
..+.+.+. .. .+++++||+....
T Consensus 117 ~~l~~~l~~~~~~~~tii~~sh~~~~~ 143 (157)
T cd00267 117 ERLLELLRELAEEGRTVIIVTHDPELA 143 (157)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 55555443 33 4899999995543
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-19 Score=196.34 Aligned_cols=177 Identities=15% Similarity=0.090 Sum_probs=119.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+.+.|
T Consensus 1256 ~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-----------~~G~I~IDG~dI~~i~l~~L----R~~IsiVpQ 1320 (1622)
T PLN03130 1256 HGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL-----------ERGRILIDGCDISKFGLMDL----RKVLGIIPQ 1320 (1622)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC-----------CCceEEECCEecccCCHHHH----HhccEEECC
Confidence 578899999999999999999999999999999988 89999999998765543222 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.. .. ....+.+.++++..++ .....-.+||||||||++||
T Consensus 1321 dp~LF~GTIreNLd~----~~-~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1321 APVLFSGTVRFNLDP----FN-EHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred CCccccccHHHHhCc----CC-CCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 2222221 122211 11 1123446666666554 22233458999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+.++-+...+..+++
T Consensus 1396 LILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~----------~DrIlVLd~G~IvE~Gt~~eL 1459 (1622)
T PLN03130 1396 LVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID----------CDRILVLDAGRVVEFDTPENL 1459 (1622)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh----------CCEEEEEECCEEEEeCCHHHH
Confidence 99999999999988555554443 34599999999543322 456888888766644444443
|
|
| >PRK15494 era GTPase Era; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-18 Score=157.49 Aligned_cols=156 Identities=31% Similarity=0.392 Sum_probs=110.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d 141 (317)
+++|+|++|||||||+|.|+|... .+++.++||++...|.+.+++.++.++||||+...... ...+.......+..+|
T Consensus 54 kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aD 133 (339)
T PRK15494 54 SVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSAD 133 (339)
T ss_pred EEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCC
Confidence 999999999999999999999875 47889999999999999999999999999998543221 1112233344577899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|......... .. +++.
T Consensus 134 vil~VvD~~~s~~~~~--~~--------------------------------------------il~~------------ 155 (339)
T PRK15494 134 LVLLIIDSLKSFDDIT--HN--------------------------------------------ILDK------------ 155 (339)
T ss_pred EEEEEEECCCCCCHHH--HH--------------------------------------------HHHH------------
Confidence 9999998654221110 00 1111
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh--hHHH-Hhc---CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDK-LAR---QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~-l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+.. ...|.++|+||+|+.... .... +.. +..++++||++|.|+++|.+.|.+.++.
T Consensus 156 ----------l~~--~~~p~IlViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 156 ----------LRS--LNIVPIFLLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKI 217 (339)
T ss_pred ----------HHh--cCCCEEEEEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCC
Confidence 100 135778899999986431 1222 222 2458999999999999999999988753
|
|
| >PRK05291 trmE tRNA modification GTPase TrmE; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.6e-18 Score=161.60 Aligned_cols=154 Identities=27% Similarity=0.272 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~~ 138 (317)
+.+++|+|++|||||||+|.|+|... .++++||||++...+.+.++|.++.++||||+.... ..... .......+.
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHHHHHHHH
Confidence 56899999999999999999999875 589999999999999999999999999999986421 11110 122344577
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|...+..... . ..+
T Consensus 294 ~aD~il~VvD~s~~~s~~~-~-~~l------------------------------------------------------- 316 (449)
T PRK05291 294 EADLVLLVLDASEPLTEED-D-EIL------------------------------------------------------- 316 (449)
T ss_pred hCCEEEEEecCCCCCChhH-H-HHH-------------------------------------------------------
Confidence 8999999999865422110 0 000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. ....|+++|+||+|+....... .......+++||+++.|+++|.+.|.+.+..
T Consensus 317 -----------~~----~~~~piiiV~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 317 -----------EE----LKDKPVIVVLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred -----------Hh----cCCCCcEEEEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 00 1247999999999997543332 1223468899999999999999999988753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-19 Score=194.49 Aligned_cols=178 Identities=17% Similarity=0.115 Sum_probs=121.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++|||+|++|||||||+++|.|...| .+|.|.++|.++.-++...+ +..+++++|
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-----------~~G~I~IDG~di~~i~l~~L----R~~I~iVpQ 1391 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEV-----------CGGEIRVNGREIGAYGLREL----RRQFSMIPQ 1391 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEEcccCCHHHH----HhcceEECC
Confidence 578899999999999999999999999999999988 89999999998865543221 222333333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.+.++..++ . +...-.+||||||||++||
T Consensus 1392 dp~LF~gTIreNI----dp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1392 DPVLFDGTVRQNV----DPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred CCccccccHHHHh----Cccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 3222221 1222 1111 1223456777777665 1 1223367999999999998
Q ss_pred -eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+++.-+...+..+++.
T Consensus 1467 ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~----------~DrIlVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1467 FILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ----------YDKIIVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh----------CCEEEEEECCEEEEECCHHHHH
Confidence 89999999999998655555443 34599999999643332 4568888887666544444443
|
|
| >COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=164.79 Aligned_cols=155 Identities=25% Similarity=0.324 Sum_probs=116.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d 141 (317)
.++|++|.||+|||||||+|+|....|+||||+|++..+|...+.|.++.++|.||.++-....... +....-.-...|
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D 83 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPD 83 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCC
Confidence 3699999999999999999999999999999999999999999999999999999998654433221 111111224579
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
+++.++|+.+-+.+.....++++
T Consensus 84 ~ivnVvDAtnLeRnLyltlQLlE--------------------------------------------------------- 106 (653)
T COG0370 84 LIVNVVDATNLERNLYLTLQLLE--------------------------------------------------------- 106 (653)
T ss_pred EEEEEcccchHHHHHHHHHHHHH---------------------------------------------------------
Confidence 99999998754333222111111
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
-..|+++++|.+|..... +.+++.+ ..+++++||.+|.|++++++.+.+....
T Consensus 107 ---------------~g~p~ilaLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~~ 165 (653)
T COG0370 107 ---------------LGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAES 165 (653)
T ss_pred ---------------cCCCeEEEeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhccc
Confidence 147899999999987542 2334444 3568999999999999999999876543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-19 Score=192.94 Aligned_cols=177 Identities=15% Similarity=0.056 Sum_probs=119.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+|++|||||||+++|.|...| .+|.|.++|.++.-++..-+ +...+.+.|
T Consensus 1303 ~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-----------~~G~I~IdG~dI~~i~~~~L----R~~i~iVpQ 1367 (1522)
T TIGR00957 1303 RHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINES-----------AEGEIIIDGLNIAKIGLHDL----RFKITIIPQ 1367 (1522)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccC-----------CCCeEEECCEEccccCHHHH----HhcCeEECC
Confidence 578899999999999999999999999999999987 89999999998866543221 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.+.|+..++ .....-.+||||||||++||
T Consensus 1368 dp~LF~gTIr~NL----dp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1368 DPVLFSGSLRMNL----DPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred CCcccCccHHHHc----Cccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 3222221 1222 1111 1223345666666554 12233467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-. ....|+|+.++-+...+..+++
T Consensus 1443 LiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~----------~~DrIlVld~G~IvE~G~~~eL 1506 (1522)
T TIGR00957 1443 LVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM----------DYTRVIVLDKGEVAEFGAPSNL 1506 (1522)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------hCCEEEEEECCEEEEECCHHHH
Confidence 99999999999998555555553 3459999999954332 2456888988766644444443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-19 Score=190.85 Aligned_cols=158 Identities=13% Similarity=0.089 Sum_probs=104.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEE--ecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL--LDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~--~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+.+|+.+||+||||||||||+|+|+|...+ -.+.+|.|.++|.++.. ....|+..+....
T Consensus 780 ~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~--------g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~---- 847 (1394)
T TIGR00956 780 NNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTT--------GVITGGDRLVNGRPLDSSFQRSIGYVQQQDLH---- 847 (1394)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC--------CCcceeEEEECCEECChhhhcceeeecccccC----
Confidence 577888999999999999999999999999999752 01278999999987521 0011222111000
Q ss_pred HHHHhhhccCcEEEEEecC-----CCchhhHHHHHHHHHHccc--cccccCC----cccccceeeeeeE----------e
Q 021103 131 RQVIAVSKSSDIVLMVLDA-----SKSEGHRQILTKELEAVGL--RLNKRPP----QIYFKKKKTGGIS----------F 189 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~-----~~~~~~~~~~~~~L~~~~l--~~~~~~~----~LS~g~~qr~~ia----------l 189 (317)
...+...+.+.+.... .......+.+.+.++.+++ ..++.++ .||||||||+.|| +
T Consensus 848 ---~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iL 924 (1394)
T TIGR00956 848 ---LPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLL 924 (1394)
T ss_pred ---CCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEE
Confidence 0000001111111000 0111223567889999998 4566665 7999999999887 7
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV 225 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~ 225 (317)
++||||++||......+++.+ ...+ ++|+++|++..
T Consensus 925 lLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 999999999998866555444 3334 99999999764
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4e-19 Score=181.23 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=130.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+|||||+||||||.+.+|-+.+.| ..|.|.++|.++.-+++..++ ...+.+.|
T Consensus 1007 ~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp-----------~~G~V~IDg~dik~lnl~~LR----~~i~lVsQ 1071 (1228)
T KOG0055|consen 1007 NNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDP-----------DAGKVKIDGVDIKDLNLKWLR----KQIGLVSQ 1071 (1228)
T ss_pred cCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCC-----------CCCeEEECCcccccCCHHHHH----Hhcceecc
Confidence 788999999999999999999999999999999877 899999999998776654332 22333444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.+.++.. .+++.+..+. ...+.+.++++..+. ....+-.+||||||||++||
T Consensus 1072 EP~LF~~TIrENI~YG~~~----vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkI 1147 (1228)
T KOG0055|consen 1072 EPVLFNGTIRENIAYGSEE----VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147 (1228)
T ss_pred CchhhcccHHHHHhccCCC----CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCe
Confidence 4433332 4555554211 122233333333322 34556679999999999999
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
|+|||.||+||.++ +++.|+......|.|++.|....-+ +..+|.|+.+.-++..+.-+.+.+
T Consensus 1148 LLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq----------naD~I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1148 LLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ----------NADVIAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred eeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh----------cCCEEEEEECCEEEecccHHHHHh
Confidence 99999999999887 5666666666779999999854332 467899999888777666666554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=186.50 Aligned_cols=171 Identities=20% Similarity=0.179 Sum_probs=106.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCch-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKG- 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~- 128 (317)
.++++.+.+|+.++|+|||||||||||++|+|...+.. ..+|.|.++|.++.... ..++..+...-..
T Consensus 182 ~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~--------~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 182 KDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSL--------KVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCC--------cceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 67889999999999999999999999999999986610 13899999998763221 1222222110000
Q ss_pred -hHHHHHhhh---ccCcE-EEEEecCCCch--------h---------------hHHHHHHHHHHcccc--c-----ccc
Q 021103 129 -RGRQVIAVS---KSSDI-VLMVLDASKSE--------G---------------HRQILTKELEAVGLR--L-----NKR 173 (317)
Q Consensus 129 -~~~~~~~~~---~~~d~-i~~v~~~~~~~--------~---------------~~~~~~~~L~~~~l~--~-----~~~ 173 (317)
-+.+.+... +.... ........... . ....+...|+.+|+. . +..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 011211110 00000 00000000000 0 001245678888882 2 556
Q ss_pred CCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCC--ChhhHHHH
Q 021103 174 PPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDA--TVDDLIDV 231 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~--~~~~~~~~ 231 (317)
+..||||||||+.+| +++||||+|||.....++++.++ . .+ |+|+++|++ ++.+++|.
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 789999999999998 89999999999998766655554 2 24 899999985 45555543
|
|
| >KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.5e-18 Score=157.97 Aligned_cols=173 Identities=24% Similarity=0.334 Sum_probs=120.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh--HHHHHhhh
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR--GRQVIAVS 137 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~--~~~~~~~~ 137 (317)
.|..+||+|+||+|||||+|+|+..... |++.||||||...-.+.++|.++.+.||+|+++........ ..+....+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~ 346 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRI 346 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHHH
Confidence 4789999999999999999999998865 99999999999999999999999999999998733322221 23444566
Q ss_pred ccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 138 KSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
..+|++++++|+...... ...+.+.|+..+- ..
T Consensus 347 ~~advi~~vvda~~~~t~sd~~i~~~l~~~~~----------------------------------------------g~ 380 (531)
T KOG1191|consen 347 ERADVILLVVDAEESDTESDLKIARILETEGV----------------------------------------------GL 380 (531)
T ss_pred hhcCEEEEEecccccccccchHHHHHHHHhcc----------------------------------------------ce
Confidence 789999999998432111 1112222222211 01
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-hhHH-----HHh-----cCCCeEEEeccccccHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-DDVD-----KLA-----RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-~~~~-----~l~-----~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....-+ ...|.++++||.|+... .+.. +.. .++-.+.+||.+++|+++|.+.+.+
T Consensus 381 ~~~~~~~-------------~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~ 447 (531)
T KOG1191|consen 381 VVIVNKM-------------EKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLN 447 (531)
T ss_pred EEEeccc-------------cccceEEEechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHH
Confidence 0000000 14789999999999865 1111 222 2334555999999999999999999
Q ss_pred HhCeeEE
Q 021103 286 EMGLVRV 292 (317)
Q Consensus 286 ~l~~~~~ 292 (317)
.+....+
T Consensus 448 ~~~~~~~ 454 (531)
T KOG1191|consen 448 IVERLVV 454 (531)
T ss_pred HHHHhhc
Confidence 8876644
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-18 Score=161.22 Aligned_cols=159 Identities=14% Similarity=0.159 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|....|+-+|||||+|||||||.++|.|.-.| .+|.|+++|.++..+|.. ...+.+++..|
T Consensus 353 ~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-----------~~G~VRLDga~l~qWd~e----~lG~hiGYLPQ 417 (580)
T COG4618 353 KGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPP-----------TSGSVRLDGADLRQWDRE----QLGRHIGYLPQ 417 (580)
T ss_pred ecceeEecCCceEEEECCCCccHHHHHHHHHccccc-----------CCCcEEecchhhhcCCHH----HhccccCcCcc
Confidence 578888889999999999999999999999999998 899999999888766632 12223444444
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHH---------HHHHHcc--c--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILT---------KELEAVG--L--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~---------~~L~~~~--l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. +++|.-+- ++.+.+.+- +++-++- . ....--..||||||||+++|
T Consensus 418 dVeLF~GTIaeNIaRf~----~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 418 DVELFDGTIAENIARFG----EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFL 493 (580)
T ss_pred cceecCCcHHHHHHhcc----ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcE
Confidence 4444332 22221111 111111222 2222221 1 23334568999999999999
Q ss_pred eeecCCCCCCCHHHHHHH---HHHhccc-CcEEEecCCCChhhHHH
Q 021103 189 FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd~~~~~~~~ 230 (317)
+++|||-++||.+--..+ +...+.. +++|+++|.+.+-..+|
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~D 539 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVD 539 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcc
Confidence 899999999998764444 4444444 49999999988766544
|
|
| >PRK00089 era GTPase Era; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.2e-17 Score=150.39 Aligned_cols=156 Identities=31% Similarity=0.402 Sum_probs=111.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
..|+|+|++|||||||+|+|+|... .+++.|.||++...|.+..++.++.++||||+...... ...+.......+..+
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~ 85 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDV 85 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcC
Confidence 4799999999999999999999875 48999999999998888777789999999998653311 111122334456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|+....... .. .+++.
T Consensus 86 D~il~vvd~~~~~~~~--~~--------------------------------------------~i~~~----------- 108 (292)
T PRK00089 86 DLVLFVVDADEKIGPG--DE--------------------------------------------FILEK----------- 108 (292)
T ss_pred CEEEEEEeCCCCCChh--HH--------------------------------------------HHHHH-----------
Confidence 9999999876521110 00 01111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh---cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+. ..+.+. .+. .+..++++||.++.|+++|.+.+.+.++
T Consensus 109 -----------l~--~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~ 171 (292)
T PRK00089 109 -----------LK--KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP 171 (292)
T ss_pred -----------Hh--hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence 10 0137999999999998 433322 222 2456899999999999999999998874
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.4e-19 Score=189.21 Aligned_cols=168 Identities=12% Similarity=0.051 Sum_probs=103.8
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHH
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
-.++++.+++|+.++|+||||||||||||+|+|....- ..+.+|.|.++|.++..... ..+...++..
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~-------~~~~~G~I~~~G~~~~~~~~-----~~r~~i~yv~ 144 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGF-------HIGVEGVITYDGITPEEIKK-----HYRGDVVYNA 144 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCC-------CCCceeEEEECCEehHHHHh-----hcCceeEEec
Confidence 36788999999999999999999999999999986210 01278999999976531110 0000111111
Q ss_pred HHHhhh---ccCcEEEEEecC---------CCchhhHHH-HHHHHHHccc--cccc-----cCCcccccceeeeeeE---
Q 021103 132 QVIAVS---KSSDIVLMVLDA---------SKSEGHRQI-LTKELEAVGL--RLNK-----RPPQIYFKKKKTGGIS--- 188 (317)
Q Consensus 132 ~~~~~~---~~~d~i~~v~~~---------~~~~~~~~~-~~~~L~~~~l--~~~~-----~~~~LS~g~~qr~~ia--- 188 (317)
|....+ ...+.+.+.... .......+. ....|+.+|+ ..++ .+..||||||||+.||
T Consensus 145 Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL 224 (1394)
T TIGR00956 145 ETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEAS 224 (1394)
T ss_pred cccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHH
Confidence 111011 111111111000 011111122 3557888998 3333 4567999999999998
Q ss_pred ------eeecCCCCCCCHHHHHHHHHHhc---c-cC-cEEEecCCC--ChhhHHHH
Q 021103 189 ------FNSTLPLTHVDEKLCYQILHEYK---I-HN-AEVLFREDA--TVDDLIDV 231 (317)
Q Consensus 189 ------lilDEPt~~LD~~~~~~~l~~l~---~-~~-~~i~~shd~--~~~~~~~~ 231 (317)
+++||||++||......+++.++ . .+ ++|+++|++ .+.+++|.
T Consensus 225 ~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 225 LGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred HhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 89999999999998666555553 3 24 899999985 34444443
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=192.44 Aligned_cols=161 Identities=13% Similarity=0.090 Sum_probs=103.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+++||+|+||||||||+++|+|.+.| .+|.|.+ +|.++.-++...+ +..++++.
T Consensus 402 ~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-----------~~G~I~i~~g~~i~~~~~~~l----r~~Ig~V~ 466 (1466)
T PTZ00265 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP-----------TEGDIIINDSHNLKDINLKWW----RSKIGVVS 466 (1466)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC-----------CCCeEEEeCCcchhhCCHHHH----HHhccEec
Confidence 578899999999999999999999999999999988 8999999 4566533221100 11111112
Q ss_pred HHHhhhc--cCcEEEEEe---------------------------------------------------c--CCCchhhH
Q 021103 132 QVIAVSK--SSDIVLMVL---------------------------------------------------D--ASKSEGHR 156 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~---------------------------------------------------~--~~~~~~~~ 156 (317)
|....+. -.+++.+.. + ........
T Consensus 467 Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 546 (1466)
T PTZ00265 467 QDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546 (1466)
T ss_pred ccccchhccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCH
Confidence 2111110 011111100 0 00001122
Q ss_pred HHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhc---
Q 021103 157 QILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYK--- 211 (317)
Q Consensus 157 ~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~--- 211 (317)
+.+.++++.+++ ........|||||+||++|| +++||||++||+.....+.+.+.
T Consensus 547 ~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~ 626 (1466)
T PTZ00265 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLK 626 (1466)
T ss_pred HHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHh
Confidence 345566666654 13456789999999999998 99999999999998665555443
Q ss_pred c--cCcEEEecCCCChhhH
Q 021103 212 I--HNAEVLFREDATVDDL 228 (317)
Q Consensus 212 ~--~~~~i~~shd~~~~~~ 228 (317)
. ..|+|+++|+....+.
T Consensus 627 ~~~g~TvIiIsHrls~i~~ 645 (1466)
T PTZ00265 627 GNENRITIIIAHRLSTIRY 645 (1466)
T ss_pred hcCCCEEEEEeCCHHHHHh
Confidence 2 3499999999654443
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-18 Score=140.09 Aligned_cols=150 Identities=17% Similarity=0.218 Sum_probs=103.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.++.....|+++-+|||||||||||+-.|+|..+ -+|.|.++|.++.-..+..+... +.+
T Consensus 17 plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~------------~sGsi~~~G~~l~~~~~~eLArh--------RAY 76 (248)
T COG4138 17 PLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS------------GSGSIQFAGQPLEAWSATELARH--------RAY 76 (248)
T ss_pred ccccccccceEEEEECCCCccHHHHHHHHhCCCC------------CCceEEECCcchhHHhHhHHHHH--------HHH
Confidence 4566677799999999999999999999999986 58999999988765443322110 111
Q ss_pred HhhhccCcEEEEE---ecCCCch-hhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------eee
Q 021103 134 IAVSKSSDIVLMV---LDASKSE-GHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNS 191 (317)
Q Consensus 134 ~~~~~~~d~i~~v---~~~~~~~-~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------lil 191 (317)
+..-+..-..+.+ +..+.+. .....+.+....+++ ++.+...+|||||=||+-+| +++
T Consensus 77 LsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLll 156 (248)
T COG4138 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLL 156 (248)
T ss_pred HhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEe
Confidence 1111111111111 1112222 123345556666777 77888999999999999888 899
Q ss_pred cCCCCCCCHHH---HHHHHHHhcccC-cEEEecCCC
Q 021103 192 TLPLTHVDEKL---CYQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 192 DEPt~~LD~~~---~~~~l~~l~~~~-~~i~~shd~ 223 (317)
|||.++||... ...++..+...+ ++||.+||.
T Consensus 157 DEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 157 DEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred cCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 99999999864 556777777666 999999994
|
|
| >cd01900 YchF YchF subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-18 Score=153.00 Aligned_cols=86 Identities=35% Similarity=0.638 Sum_probs=78.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccccCCc
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~~~~ 127 (317)
+||||.||||||||||+|+|....+++|||||++|..|.+.+.+. ++.++|+||+.+....+.
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 589999999999999999999988999999999999999998764 489999999998777777
Q ss_pred hhHHHHHhhhccCcEEEEEecCC
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
+.+.+++..++.+|++++++++.
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 77788888999999999999864
|
YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.7e-19 Score=188.84 Aligned_cols=163 Identities=15% Similarity=0.105 Sum_probs=105.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+.+||+||||||||||||+|+|...+ | +.+|.|.++|.+....+ .....++..|
T Consensus 897 ~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~-----g----~~~G~I~inG~~~~~~~-------~~~~igyv~Q 960 (1470)
T PLN03140 897 REVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTG-----G----YIEGDIRISGFPKKQET-------FARISGYCEQ 960 (1470)
T ss_pred eCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCC-----C----cccceEEECCccCChHH-------hhhheEEEcc
Confidence 478889999999999999999999999999998642 1 15799999986542100 0001111111
Q ss_pred HHhhhc---cCcEEEEEe--cC-C--CchhhHHHHHHHHHHccc--cccccC-----CcccccceeeeeeE---------
Q 021103 133 VIAVSK---SSDIVLMVL--DA-S--KSEGHRQILTKELEAVGL--RLNKRP-----PQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~-~--~~~~~~~~~~~~L~~~~l--~~~~~~-----~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+.+.+.. .. . ......+.+.+.++.+++ ..++.+ ..||||||||+.||
T Consensus 961 ~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~l 1040 (1470)
T PLN03140 961 NDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSI 1040 (1470)
T ss_pred ccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCE
Confidence 110111 011111100 10 0 111223457888999998 455554 58999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCCh--hhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATV--DDLIDV 231 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~--~~~~~~ 231 (317)
+++||||+|||......+++.++ ..+ ++|+++|++.. .+.+|.
T Consensus 1041 L~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~ 1089 (1470)
T PLN03140 1041 IFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDE 1089 (1470)
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCE
Confidence 89999999999998666655553 334 99999999763 344443
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-18 Score=140.08 Aligned_cols=180 Identities=19% Similarity=0.168 Sum_probs=122.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
..+||..+.|..+|+||.||||||||.++|+|..+| ++|+|.++|.++.+-|-. .....+.+.+|
T Consensus 30 ~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~P-----------TsG~il~n~~~L~~~Dy~----~R~k~IRMiFQ 94 (267)
T COG4167 30 KPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP-----------TSGEILINDHPLHFGDYS----FRSKRIRMIFQ 94 (267)
T ss_pred cceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCC-----------CCceEEECCccccccchH----hhhhheeeeec
Confidence 467888888999999999999999999999999998 899999999988765421 01111111111
Q ss_pred HHhh-h----ccCcEEEEEecC---CCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAV-S----KSSDIVLMVLDA---SKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~-~----~~~d~i~~v~~~---~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
.... + +-..++...+.. ..+....+++.+.|..+|+ ..+-++..||.|||||+++| ++.|
T Consensus 95 Dpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaD 174 (267)
T COG4167 95 DPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIAD 174 (267)
T ss_pred CCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEeh
Confidence 1100 0 000111111111 1223345678888999999 67888999999999999998 8999
Q ss_pred CCCCCCCHHHHHHHHHHh---c-ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH
Q 021103 193 LPLTHVDEKLCYQILHEY---K-IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV 256 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~-~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~ 256 (317)
|..++||.....+++..+ + ..| +.|+++.+.-+- .. ....++|+...+.+..+.-
T Consensus 175 eAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~i---KH------i~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 175 EALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMI---KH------ISDQVLVMHEGEVVERGST 234 (267)
T ss_pred hhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHh---hh------hcccEEEEecCceeecCCh
Confidence 999999998866665544 3 234 778888764432 12 2456889988887755433
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-18 Score=158.93 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=100.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.++|-+.-..+||||||||+||||||+.|+|.+.| ..|...-+ +.+.+ |++++..
T Consensus 605 kldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P-----------~~GE~RKn-hrL~i----G~FdQh~--------- 659 (807)
T KOG0066|consen 605 KLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDP-----------NDGELRKN-HRLRI----GWFDQHA--------- 659 (807)
T ss_pred cccccccccceeEEECCCCccHHHHHHHHhcCCCC-----------Ccchhhcc-ceeee----echhhhh---------
Confidence 34444444679999999999999999999999987 78877653 33222 3332211
Q ss_pred Hhhhcc-CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 134 IAVSKS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 134 ~~~~~~-~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
...+.. -..+.++..... ...+.++..|..||+ ...-++..|||||+.|+.+| ||+||||++||.
T Consensus 660 ~E~L~~Eetp~EyLqr~FN--lpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 660 NEALNGEETPVEYLQRKFN--LPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred HHhhccccCHHHHHHHhcC--CChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 111110 001111111111 124567888999999 23346789999999999887 999999999999
Q ss_pred HHHHHHHHHhcc-cCcEEEecCCCCh
Q 021103 201 KLCYQILHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 201 ~~~~~~l~~l~~-~~~~i~~shd~~~ 225 (317)
+++..+-+.++. .+++|++|||..+
T Consensus 738 ESIDALaEAIney~GgVi~VsHDeRL 763 (807)
T KOG0066|consen 738 ESIDALAEAINEYNGGVIMVSHDERL 763 (807)
T ss_pred hhHHHHHHHHHhccCcEEEEecccce
Confidence 999988888875 4699999999654
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=176.51 Aligned_cols=166 Identities=19% Similarity=0.191 Sum_probs=118.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe-cCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL-DLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~-d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+..|+.|+|||||||++|+|+|...| ++|.+.+.|..+..- +- .......++.+
T Consensus 582 ~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~-----------t~G~a~i~g~~i~~~~~~----~~~~~~iGyCP 646 (885)
T KOG0059|consen 582 RGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKP-----------TSGEALIKGHDITVSTDF----QQVRKQLGYCP 646 (885)
T ss_pred cceEEEecCCceEEEecCCCCCchhhHHHHhCCccC-----------CcceEEEecCccccccch----hhhhhhcccCC
Confidence 578899999999999999999999999999999998 899999988876421 10 00112223323
Q ss_pred HHHhh---hccCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 132 QVIAV---SKSSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 132 ~~~~~---~~~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
|.-.. +..-+.+.+.. .+.......+.+...|+.+++ ..+++.+.+|||+|+|+.+| +++||||
T Consensus 647 Q~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPs 726 (885)
T KOG0059|consen 647 QFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPS 726 (885)
T ss_pred chhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCC
Confidence 32111 11111111111 121222334558889999999 78889999999999999876 8999999
Q ss_pred CCCCHHHH---HHHHHHhcccC-cEEEecCC-CChhhHHHHHh
Q 021103 196 THVDEKLC---YQILHEYKIHN-AEVLFRED-ATVDDLIDVIE 233 (317)
Q Consensus 196 ~~LD~~~~---~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~ 233 (317)
+|+||... ++++..+...+ ++|++||. .+++.+|+++.
T Consensus 727 tGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~a 769 (885)
T KOG0059|consen 727 TGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTA 769 (885)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhh
Confidence 99999875 45566666555 99999999 67888888753
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-18 Score=162.17 Aligned_cols=194 Identities=16% Similarity=0.187 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh------------cCCCC--CCCCC------------------
Q 021103 4 IEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQL------------LEPPK--GSSGA------------------ 51 (317)
Q Consensus 4 ~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~------------~~~~~--~~~~~------------------ 51 (317)
++..+++|.||.+|+.+.++.. .+.+|++.|.+.- +.++. +..+.
T Consensus 302 ~~~R~h~q~fid~FrYna~ra~---svqSRIk~L~kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V~f~y~p~~y~ 378 (582)
T KOG0062|consen 302 MKYRAHLQVFIDKFRYNAARAS---SVQSRIKMLGKLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYVAFEYTPSEYQ 378 (582)
T ss_pred HHHHHHHHHHHHHhccCcccch---hHHHHHHHhccCCCCCccceecccceecCCCCCcCCCCeeEEEeeeccCCCcchh
Confidence 4567899999999977665544 3446666654320 11111 00000
Q ss_pred -CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchh
Q 021103 52 -GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 52 -~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~ 129 (317)
...+++..+...+++++|+||+||||+++++.|...| .+|.+.+.+. .+. +..+.
T Consensus 379 ~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~-----------~rgi~~~~~r~ri~------~f~Qh------ 435 (582)
T KOG0062|consen 379 WRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTP-----------TRGIVGRHPRLRIK------YFAQH------ 435 (582)
T ss_pred hhhccCCccchhhhhheeccCchhHHHHHHHHhccCCc-----------ccceeeecccceec------chhHh------
Confidence 1122333344679999999999999999999998887 6777665432 221 11111
Q ss_pred HHHHHhhhcc-CcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 130 GRQVIAVSKS-SDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 130 ~~~~~~~~~~-~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. ...+.++. ...+....+.+++.|+.||+ ........||||||.|+++| |++|||||
T Consensus 436 ---hvd~l~~~v~~vd~~~-~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTN 511 (582)
T KOG0062|consen 436 ---HVDFLDKNVNAVDFME-KSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTN 511 (582)
T ss_pred ---hhhHHHHHhHHHHHHH-HhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCc
Confidence 0111100 00011111 11122245678899999999 55666899999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc-ccCcEEEecCCCChhh
Q 021103 197 HVDEKLCYQILHEYK-IHNAEVLFREDATVDD 227 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~-~~~~~i~~shd~~~~~ 227 (317)
+||.+++..+-+.++ ..|++|+||||.++-+
T Consensus 512 hLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~ 543 (582)
T KOG0062|consen 512 HLDRDSLGALAKALKNFNGGVVLVSHDEEFIS 543 (582)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEEECcHHHHh
Confidence 999999999999998 5679999999966443
|
|
| >cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.6e-17 Score=133.89 Aligned_cols=158 Identities=27% Similarity=0.391 Sum_probs=105.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhh-hccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAV-SKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~-~~~~d 141 (317)
+++++|++|+|||||+|++++....++++|++|.++..+.+.+++.++.++||||+......... ...+.... ....|
T Consensus 2 ~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d 81 (168)
T cd01897 2 TLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRA 81 (168)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHHhccC
Confidence 68999999999999999999988777889999999999998888899999999997532111110 01111111 12357
Q ss_pred EEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
.+++++|...... .......+ +..+.
T Consensus 82 ~~l~v~d~~~~~~~~~~~~~~~--------------------------------------------~~~l~--------- 108 (168)
T cd01897 82 AVLFLFDPSETCGYSLEEQLSL--------------------------------------------FEEIK--------- 108 (168)
T ss_pred cEEEEEeCCcccccchHHHHHH--------------------------------------------HHHHH---------
Confidence 7888888754321 00111111 11110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+....... .+.+ ...++.+||+++.|++++.+.+.+.|
T Consensus 109 -------------~~~~~~pvilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 109 -------------PLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred -------------hhcCcCCeEEEEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence 000147999999999997654332 2222 24578899999999999999987754
|
NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-18 Score=188.11 Aligned_cols=169 Identities=20% Similarity=0.135 Sum_probs=114.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||+|++|||||||+++|+|... .+|.|.++|.++.-++...+ +..+.+.+|
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~------------~~G~I~IdG~di~~i~~~~l----R~~is~IpQ 1299 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS------------TEGEIQIDGVSWNSVTLQTW----RKAFGVIPQ 1299 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC------------CCcEEEECCEEcccCCHHHH----HhceEEEeC
Confidence 57889999999999999999999999999999973 47999999998764432211 122222333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cc-------c----ccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RL-------N----KRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-------~----~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++ +... ....+.+.++|+..++ .. + ..-.+||+||+||+++|
T Consensus 1300 dp~LF~GTIR~NL----dp~~-~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~I 1374 (1490)
T TIGR01271 1300 KVFIFSGTFRKNL----DPYE-QWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374 (1490)
T ss_pred CCccCccCHHHHh----Cccc-CCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCE
Confidence 3222221 1111 1111 1133467777777766 11 1 12247999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||.++-..+.+.+. ...|+|+++|+...-.. ...|+|+.++-+..
T Consensus 1375 LlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~----------~DrIlvL~~G~ivE 1431 (1490)
T TIGR01271 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE----------CQQFLVIEGSSVKQ 1431 (1490)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEEE
Confidence 99999999999998666655554 34599999999543322 35678888776553
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-18 Score=149.02 Aligned_cols=70 Identities=11% Similarity=0.115 Sum_probs=55.3
Q ss_pred HHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecC
Q 021103 160 TKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFRE 221 (317)
Q Consensus 160 ~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~sh 221 (317)
.+.|+.+++ ..++++.+||+||+||+.++ +++||||++||+.....+++.+ ...+ ++|++||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 467888988 36889999999999999876 8999999999999866655544 3334 8999999
Q ss_pred CCChhhHH
Q 021103 222 DATVDDLI 229 (317)
Q Consensus 222 d~~~~~~~ 229 (317)
|.+..+.+
T Consensus 198 ~~~~~~~~ 205 (226)
T cd03270 198 DEDTIRAA 205 (226)
T ss_pred CHHHHHhC
Confidence 97644433
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-18 Score=145.16 Aligned_cols=157 Identities=17% Similarity=0.182 Sum_probs=105.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++|.++|.||||||||+|+|+|...+ ++|.|.++|.++....... ......+++|
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~-----------t~G~I~Idg~dVtk~~~~~----RA~~larVfQ 87 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-----------TSGQILIDGVDVTKKSVAK----RANLLARVFQ 87 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCcccc-----------CCceEEECceecccCCHHH----HhhHHHHHhc
Confidence 456778888999999999999999999999999988 8999999999886543210 0011122222
Q ss_pred HHh--hhcc---CcEEEE-EecCC----Cc---hhhHHHHHHHHHHccc----cccccCCcccccceeeeeeE-------
Q 021103 133 VIA--VSKS---SDIVLM-VLDAS----KS---EGHRQILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 133 ~~~--~~~~---~d~i~~-v~~~~----~~---~~~~~~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia------- 188 (317)
... .+.. .+++.+ ..++. .. .......++.+..+++ .+..+..-|||||+|-+.++
T Consensus 88 dp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~p 167 (263)
T COG1101 88 DPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPP 167 (263)
T ss_pred chhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCC
Confidence 211 0011 111111 11110 11 1123344556676665 78889999999999998766
Q ss_pred --eeecCCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCC
Q 021103 189 --FNSTLPLTHVDEKLCYQILHEYK----IHN-AEVLFREDAT 224 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~ 224 (317)
+++||=|++|||.....+++.-. ..+ +.+||||+.+
T Consensus 168 kiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 168 KILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred cEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 89999999999998666655432 334 8999999843
|
|
| >cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.3e-17 Score=131.56 Aligned_cols=154 Identities=27% Similarity=0.302 Sum_probs=110.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~ 139 (317)
|.+++++|++|||||||+|+|++... .++++|++|.+...+.+.+.+.++.++||||+....... ..........+..
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 46899999999999999999998764 478899999999999999989899999999985432110 0111233345667
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+......... ..+ .
T Consensus 81 ~~~~v~v~d~~~~~~~~~~--~~~--------------------------------------------~----------- 103 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDL--EIL--------------------------------------------E----------- 103 (157)
T ss_pred CCEEEEEEECCCCCCHHHH--HHH--------------------------------------------H-----------
Confidence 9999999988643221110 000 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+...............+.+||.++.|++.+.+.|.+.+
T Consensus 104 -----------~----~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 104 -----------L----PADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred -----------h----hcCCCEEEEEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 0 1147999999999998654432222235689999999999999999987754
|
It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.73 E-value=3e-19 Score=144.20 Aligned_cols=120 Identities=21% Similarity=0.220 Sum_probs=79.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
++++.+.+|++++|+|+||||||||+++|+|...+ .+|.|.++|.++...+.. ......++..+.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~-----------~~G~i~~~~~~~~~~~~~----~~~~~i~~~~~~ 67 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP-----------DSGSILINGKDISDIDIE----ELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHE-----------SEEEEEETTEEGTTSHHH----HHHHTEEEEESS
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccccc-----------cccccccccccccccccc----cccccccccccc
Confidence 67889999999999999999999999999999987 899999998765320000 000000000000
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc------cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l------~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
...+.... + ........+.++++.+++ ..+++...||+||+||+.+| +++|||||
T Consensus 68 ~~~~~~~t----v----~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 68 PQLFPGLT----V----RENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HCHHTTSB----H----HHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccc----c----ccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 00000000 0 001233457777888776 23444499999999999998 99999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-19 Score=150.09 Aligned_cols=154 Identities=10% Similarity=0.002 Sum_probs=92.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++++..+| .++|+||||||||||+++|+|...+..... -+.+..|.+.+.|.++.. + ......++.
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~---~----~~~~~v~~v-- 81 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKS--LRGEKMSDVIFAGSETRK---P----ANFAEVTLT-- 81 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchh--hcccCHHHHhccCCCCCC---C----CceEEEEEE--
Confidence 5667777778 999999999999999999999875411000 001112233333332110 0 000011111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE-------------eeecCCCCCCC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVD 199 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD 199 (317)
+++.+.. +... ...++.++++. .-..++.+..||+||+||++++ +++||||++||
T Consensus 82 ----fq~~~~~-~~~~------~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD 149 (197)
T cd03278 82 ----FDNSDGR-YSII------SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD 149 (197)
T ss_pred ----EEcCCCc-eeEE------ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCC
Confidence 1111111 1000 12345556666 2246778899999999999654 78899999999
Q ss_pred HHHHHHHHHHhc---ccCcEEEecCCCChhhHHH
Q 021103 200 EKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (317)
Q Consensus 200 ~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~ 230 (317)
+.....+++.+. ...++|++||+....+.+|
T Consensus 150 ~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d 183 (197)
T cd03278 150 DANVERFARLLKEFSKETQFIVITHRKGTMEAAD 183 (197)
T ss_pred HHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcc
Confidence 998666655543 3358999999976554443
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.7e-18 Score=158.34 Aligned_cols=181 Identities=15% Similarity=0.152 Sum_probs=117.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|..+|||||+|+||||+++.|.+.... .+|.|.++|++|..+....+ +..++.++|
T Consensus 555 ~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv-----------~sGsI~iDgqdIrnvt~~SL----Rs~IGVVPQ 619 (790)
T KOG0056|consen 555 SDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDV-----------NSGSITIDGQDIRNVTQSSL----RSSIGVVPQ 619 (790)
T ss_pred ecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhc-----------cCceEEEcCchHHHHHHHHH----HHhcCcccC
Confidence 688999999999999999999999999999998765 89999999998755432211 112222233
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHH-------ccc------cccccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEA-------VGL------RLNKRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~-------~~l------~~~~~~~~LS~g~~qr~~ia---------li 190 (317)
.--.+. |.+++-.....+....+.+.+.... +++ ....+--.||||||||+++| ++
T Consensus 620 DtvLFN--dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIl 697 (790)
T KOG0056|consen 620 DTVLFN--DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIIL 697 (790)
T ss_pred cceeec--ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEE
Confidence 221111 2222222111111111111111111 222 34455668999999999999 89
Q ss_pred ecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 191 STLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 191 lDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+||.||+||... ++..+..+....|.|++.|...- ..+.+.|+|+.+.-++..+.-+++.
T Consensus 698 LDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLST----------ivnAD~ILvi~~G~IvErG~HeeLl 760 (790)
T KOG0056|consen 698 LDEATSALDTNTERAIQAALARLCANRTTIVVAHRLST----------IVNADLILVISNGRIVERGRHEELL 760 (790)
T ss_pred EcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehh----------eecccEEEEEeCCeEeecCcHHHHH
Confidence 999999999765 45556666667788888887321 2346788999988887666555544
|
|
| >cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-16 Score=130.50 Aligned_cols=148 Identities=25% Similarity=0.319 Sum_probs=104.5
Q ss_pred EEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccCcEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~d~i~ 144 (317)
|+|++|+|||||+|+++|....++++|++|++...+.+.++|..+.++||||......... ......... ..+|.++
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~-~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLG-EKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcC-CCCcEEE
Confidence 5899999999999999998767889999999999999999999999999999754322111 111122211 5789999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
+++|.......... + .
T Consensus 80 ~v~d~~~~~~~~~~----~--------------------------------------------~---------------- 95 (158)
T cd01879 80 NVVDATNLERNLYL----T--------------------------------------------L---------------- 95 (158)
T ss_pred EEeeCCcchhHHHH----H--------------------------------------------H----------------
Confidence 99987643211100 0 0
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.+. ...+|+++|+||+|+.... +...+.. ...++++||.++.|++++.+.+...+
T Consensus 96 ------~~~--~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 96 ------QLL--ELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA 156 (158)
T ss_pred ------HHH--HcCCCEEEEEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence 000 0147999999999997543 2222222 24689999999999999999987754
|
E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. |
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.5e-16 Score=152.56 Aligned_cols=155 Identities=25% Similarity=0.258 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-CchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-GKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~d 141 (317)
+|+|+|++|+|||||+|.|+|... .++++||+|++...+.+.++|..+.++||||+...... ......+....++.+|
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCC
Confidence 489999999999999999999875 48899999999999999999999999999998432111 0112233445667899
Q ss_pred EEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++|+....... ..+.++|..
T Consensus 81 ~vl~vvD~~~~~~~~d~~i~~~l~~------------------------------------------------------- 105 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRK------------------------------------------------------- 105 (429)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHH-------------------------------------------------------
Confidence 999999986532211 111111111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
..+|+++|+||+|....+. ...+.+ ..+++++||++|.|++++.+.+.+.+..
T Consensus 106 ----------------~~~piilVvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 106 ----------------SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred ----------------hCCCEEEEEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence 1479999999999875432 223333 3468999999999999999999888754
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PRK09554 feoB ferrous iron transport protein B; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-16 Score=160.56 Aligned_cols=153 Identities=23% Similarity=0.321 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHH---HHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQ---VIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~---~~~~~ 137 (317)
.+++|+|.||||||||+|+|+|....++++||+|++...|.+.+++.++.++||||.++-..... ....+ .....
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~ 83 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHHhc
Confidence 47999999999999999999999888999999999999999999999999999999875322110 11111 11123
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.+........ ..+
T Consensus 84 ~~aD~vI~VvDat~ler~l~l~-~ql------------------------------------------------------ 108 (772)
T PRK09554 84 GDADLLINVVDASNLERNLYLT-LQL------------------------------------------------------ 108 (772)
T ss_pred cCCCEEEEEecCCcchhhHHHH-HHH------------------------------------------------------
Confidence 4689999999986532211100 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+.... +.+.+.+ ..+++++||.++.|++++.+.+.+..
T Consensus 109 ---------------~--e~giPvIvVlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 109 ---------------L--ELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred ---------------H--HcCCCEEEEEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence 0 1147999999999987432 2333333 24689999999999999999998765
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=151.50 Aligned_cols=157 Identities=24% Similarity=0.343 Sum_probs=111.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHH--HHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQ--VIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~--~~~~ 136 (317)
..+++|+|++|||||||+|+|+|... .++++|+||+++....+.++|.++.++||||+........+ .... ....
T Consensus 211 ~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~ 290 (472)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTHAA 290 (472)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHHHH
Confidence 46899999999999999999999875 48899999999999999999999999999998653322111 1111 1234
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... ..+ .
T Consensus 291 i~~ad~vilV~Da~~~~s~~~~--~~~--------------------------------------------~-------- 316 (472)
T PRK03003 291 IEAAEVAVVLIDASEPISEQDQ--RVL--------------------------------------------S-------- 316 (472)
T ss_pred HhcCCEEEEEEeCCCCCCHHHH--HHH--------------------------------------------H--------
Confidence 5789999999998654221110 000 0
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HH-H----Hh--cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VD-K----LA--RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~-~----l~--~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+. ...+|+++|+||+|+...+. .. . +. .+.+++++||++|.|++++.+.+.+.
T Consensus 317 --------------~~~--~~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~ 380 (472)
T PRK03003 317 --------------MVI--EAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETA 380 (472)
T ss_pred --------------HHH--HcCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 12479999999999975321 11 1 11 23568999999999999999999776
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 381 ~~ 382 (472)
T PRK03003 381 LE 382 (472)
T ss_pred HH
Confidence 53
|
|
| >cd01894 EngA1 EngA1 subfamily | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-16 Score=129.12 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=105.8
Q ss_pred EEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccCcEE
Q 021103 66 ALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 66 aliG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~d~i 143 (317)
+++|.+|+|||||+|.|++... .++++|++|++.....+.+++..+.++||||+....... ..........+..+|.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEE
Confidence 5899999999999999998763 478899999999999999999999999999986532200 00112233456779999
Q ss_pred EEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 144 LMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 144 ~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++........ ..+..++ .
T Consensus 81 i~v~d~~~~~~~~~~~~~~~~--------------------------------------------~-------------- 102 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYL--------------------------------------------R-------------- 102 (157)
T ss_pred EEEEeccccCCccHHHHHHHH--------------------------------------------H--------------
Confidence 9999875432111 0111111 0
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChhhH-HHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~-~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
....|+++|+||+|+...... ..+.+ ...++++|++++.|++++.+.|.+.
T Consensus 103 -------------~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 103 -------------KSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred -------------hcCCCEEEEEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhh
Confidence 113799999999999865433 22222 2367999999999999999998764
|
This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=149.34 Aligned_cols=92 Identities=33% Similarity=0.374 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSK 138 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~ 138 (317)
++.+++|+|++|||||||+|.|++... .++++|+||++...+.+.++|.++.++||||+.......... .......++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~ 281 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAIK 281 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHHh
Confidence 467999999999999999999999864 589999999999999999999999999999986422110000 112334567
Q ss_pred cCcEEEEEecCCCc
Q 021103 139 SSDIVLMVLDASKS 152 (317)
Q Consensus 139 ~~d~i~~v~~~~~~ 152 (317)
.+|++++++|...+
T Consensus 282 ~aD~il~V~D~s~~ 295 (442)
T TIGR00450 282 QADLVIYVLDASQP 295 (442)
T ss_pred hCCEEEEEEECCCC
Confidence 89999999998654
|
TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer. |
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.8e-16 Score=156.64 Aligned_cols=156 Identities=22% Similarity=0.228 Sum_probs=114.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~ 138 (317)
-..|+|+|++|+|||||+|.|+|... .++++||+|++...+...+++..+.++||||+.... ... ....+....+.
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~-~~~~~~~~~~~~~~~~ 353 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV-EGIDSAIASQAQIAVS 353 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC-ccHHHHHHHHHHHHHH
Confidence 46799999999999999999999765 478999999999999999999999999999975321 111 12334445567
Q ss_pred cCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 139 SSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
.+|++++++|+....... ..+.+.|
T Consensus 354 ~aD~iL~VvDa~~~~~~~d~~i~~~L------------------------------------------------------ 379 (712)
T PRK09518 354 LADAVVFVVDGQVGLTSTDERIVRML------------------------------------------------------ 379 (712)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHH------------------------------------------------------
Confidence 899999999986432111 1111111
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH-HHH--hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV-DKL--ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~-~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ...+|+++|+||+|+...... ... ......+++||++|.|+++|.+.|.+.+..
T Consensus 380 ---------------r--~~~~pvIlV~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 380 ---------------R--RAGKPVVLAVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred ---------------H--hcCCCEEEEEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence 1 125899999999998653221 222 224467899999999999999999887743
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-17 Score=178.48 Aligned_cols=160 Identities=15% Similarity=0.194 Sum_probs=104.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.|.++| .+.++.. |.+..
T Consensus 655 ~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-----------~~G~i~~~g-~i~yv~Q~~~l~~---------- 712 (1522)
T TIGR00957 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVHMKG-SVAYVPQQAWIQN---------- 712 (1522)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcc-----------CCcEEEECC-EEEEEcCCccccC----------
Confidence 578899999999999999999999999999999988 889999987 3433321 11110
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHH---HHHHccc-------cccccCCcccccceeeeeeE---------eeec
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTK---ELEAVGL-------RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~---~L~~~~l-------~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
..-.|++.+... ... ...+.+.+ +.+.++. ....+..+||||||||+++| +++|
T Consensus 713 -----~Ti~eNI~~g~~-~~~-~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 713 -----DSLRENILFGKA-LNE-KYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred -----CcHHHHhhcCCc-cCH-HHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 001122222111 111 11111111 1111111 24567789999999999999 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc------ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~------~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+. ...++|++||+......+ ..++++++.-+.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~----------D~ii~l~~G~i~ 840 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQV----------DVIIVMSGGKIS 840 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhC----------CEEEEecCCeEE
Confidence 9999999999877776653 234999999997654433 346666655443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.4e-17 Score=176.75 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=98.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|||||||||||++|+|...+ .+|.|.++|. +.++. .|.+...
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-----------~~G~i~~~g~-iayv~Q~~~l~~~--------- 501 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEP-----------SEGKIKHSGR-ISFSPQTSWIMPG--------- 501 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCE-EEEEeCCCccCCc---------
Confidence 578899999999999999999999999999999988 8899999873 43332 2222110
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHH-----HHHHHHHHccc----cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQ-----ILTKELEAVGL----RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~-----~~~~~L~~~~l----~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
...|++.+... .......+ .+.+.++.+.. ....+...||||||||+++| +++||
T Consensus 502 ------Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDe 574 (1490)
T TIGR01271 502 ------TIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDS 574 (1490)
T ss_pred ------cHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 00111211111 00000000 12222333321 24556789999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhh
Q 021103 194 PLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDD 227 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~ 227 (317)
||++||......+++. +....|+|++||+.....
T Consensus 575 p~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~ 612 (1490)
T TIGR01271 575 PFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK 612 (1490)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH
Confidence 9999999987776653 223459999999976544
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-16 Score=138.32 Aligned_cols=227 Identities=21% Similarity=0.320 Sum_probs=143.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
.-.+||||.||+|||||||+|+......+||||||.||..+.+.+.+ ..++++|.+|+.+.++
T Consensus 20 ~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 20 NLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred cceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 35899999999999999999999988899999999999999986642 2578899999999999
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCcccccceeeeeeEeee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGISFNS 191 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ialil 191 (317)
.+.+.+..+++.++.+|.+.+++++.. +..+.+.+.+.|....+ .+.++...++...+.-
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~------- 172 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRT------- 172 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcc-------
Confidence 999999999999999999999987642 33344445555444333 2333333333222210
Q ss_pred cCCCCCCCHHH-------HHHHHHHhcccCcEEEecCCCChhhH--HHHHhcccceeeeeEEEecccCCC----hhhHHH
Q 021103 192 TLPLTHVDEKL-------CYQILHEYKIHNAEVLFREDATVDDL--IDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 258 (317)
Q Consensus 192 DEPt~~LD~~~-------~~~~l~~l~~~~~~i~~shd~~~~~~--~~~~~~~~~~~p~i~v~NK~D~~~----~~~~~~ 258 (317)
-+++|... ...+.+.+-.....+.-.|+++-+++ +.... --..+|+++++|+.|-.- +.++..
T Consensus 173 ---~~~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~-lLt~kP~Vyl~N~se~dy~r~knk~l~~ 248 (391)
T KOG1491|consen 173 ---KSNLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLF-LLTAKPTVYLLNLSEHDYARKKNKKLPK 248 (391)
T ss_pred ---cCcHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhh-hhhcCceEEEEecCcchhhhHHHHHHhh
Confidence 01122111 12222222112222333455443332 22111 123689999999996542 122333
Q ss_pred HhcC-------CCeEEEecccc---------------------ccHHHHHHHHHHHhCeeEEEecCCCC
Q 021103 259 LARQ-------PNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQ 299 (317)
Q Consensus 259 l~~~-------~~~v~iSa~~~---------------------~~i~~l~~~i~~~l~~~~~~~~~~~~ 299 (317)
+..+ ..++++|+.-. ..+.++...-++.|+.+.+||.-+.+
T Consensus 249 i~~w~~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~s~L~~iI~~~~~~L~li~fFt~G~~e 317 (391)
T KOG1491|consen 249 IKEWVDEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDSSALPKIIKTGYSALNLIVFFTCGEDE 317 (391)
T ss_pred hhhhhhccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccccchhHHHHHHHHhhCceEEEeeCCch
Confidence 3222 23555555432 26777778888999999999965443
|
|
| >PRK03003 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-16 Score=150.43 Aligned_cols=155 Identities=22% Similarity=0.229 Sum_probs=111.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~ 139 (317)
.+|+|+|++|||||||+|.|+|... .+++.||+|++...+.+.++|..+.++||||+..... .. ....+....+..
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~~ 117 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAK-GLQASVAEQAEVAMRT 117 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcch-hHHHHHHHHHHHHHHh
Confidence 5799999999999999999999764 4789999999999999999999999999999753211 11 112233345678
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+...+
T Consensus 118 aD~il~VvD~~~~~s~~~~~i~~~l------------------------------------------------------- 142 (472)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARVL------------------------------------------------------- 142 (472)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHH-------------------------------------------------------
Confidence 9999999998653211 11111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ...+|+++|+||+|+...+ ...... .....+++||.+|.|+++|.+.|.+.+..
T Consensus 143 --------------~--~~~~piilV~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 143 --------------R--RSGKPVILAANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred --------------H--HcCCCEEEEEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 0 1247999999999986432 122222 23457899999999999999999887643
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=146.42 Aligned_cols=156 Identities=26% Similarity=0.307 Sum_probs=111.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~ 136 (317)
..+++|+|++|+|||||+|+|+|... .++++|+||++.....+.++|..+.++||||+.......... .......
T Consensus 173 ~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~ 252 (435)
T PRK00093 173 PIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKA 252 (435)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHH
Confidence 56899999999999999999999875 488999999999988888899999999999986543222111 1123345
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... . ++..
T Consensus 253 ~~~ad~~ilViD~~~~~~~~~~--~--------------------------------------------i~~~------- 279 (435)
T PRK00093 253 IERADVVLLVIDATEGITEQDL--R--------------------------------------------IAGL------- 279 (435)
T ss_pred HHHCCEEEEEEeCCCCCCHHHH--H--------------------------------------------HHHH-------
Confidence 6789999999998654221110 0 0000
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ...+|+++|+||+|+...+..+ .+. .+.+++++||+++.|++++.+.+.+.
T Consensus 280 ---------------~~--~~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~ 342 (435)
T PRK00093 280 ---------------AL--EAGRALVIVVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEA 342 (435)
T ss_pred ---------------HH--HcCCcEEEEEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 00 1147999999999998543322 111 23578999999999999999988664
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 343 ~ 343 (435)
T PRK00093 343 Y 343 (435)
T ss_pred H
Confidence 4
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.3e-17 Score=177.08 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=102.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE-EECCeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII-HYNDTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i-~~~g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+.++|+|++|||||||+++|+|...+ .+|.+ .+.+ .+.++.
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~G~i~~~~~-~Iayv~---------------- 685 (1495)
T PLN03232 634 SDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSH-----------AETSSVVIRG-SVAYVP---------------- 685 (1495)
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcc-----------cCCCEEEecC-cEEEEc----------------
Confidence 578899999999999999999999999999999987 55543 2222 233321
Q ss_pred HHHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE--------
Q 021103 132 QVIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS-------- 188 (317)
Q Consensus 132 ~~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia-------- 188 (317)
|....+. -.|++.+... .+.++..+.++..++ .....-.+||||||||++||
T Consensus 686 Q~p~Lf~gTIreNI~fg~~-----~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~ 760 (1495)
T PLN03232 686 QVSWIFNATVRENILFGSD-----FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSD 760 (1495)
T ss_pred CccccccccHHHHhhcCCc-----cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCC
Confidence 1111111 1233333211 122334444444443 22334457999999999999
Q ss_pred -eeecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 -FNSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 -lilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||......+++.+ . ...|+|++||+...-.. ...|++++..-+..
T Consensus 761 IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~----------aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 761 IYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPL----------MDRIILVSEGMIKE 819 (1495)
T ss_pred EEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHh----------CCEEEEEeCCEEEE
Confidence 9999999999998876665542 2 34599999999654433 34567776655443
|
|
| >PRK00093 GTP-binding protein Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-16 Score=147.86 Aligned_cols=154 Identities=25% Similarity=0.265 Sum_probs=111.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||+|.|+|... .++++|++|++...+.+.++|..+.++||||+........ ....+....+..+
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a 81 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQIREQAELAIEEA 81 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 3799999999999999999999875 4889999999999999999999999999999865211000 1122334456789
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|++++++|+....... ..+..+|..
T Consensus 82 d~il~vvd~~~~~~~~~~~~~~~l~~------------------------------------------------------ 107 (435)
T PRK00093 82 DVILFVVDGRAGLTPADEEIAKILRK------------------------------------------------------ 107 (435)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH------------------------------------------------------
Confidence 9999999986532211 111111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
...|+++|+||+|....+ ....+.. ...++++||.+|.|++++.+.|.+..
T Consensus 108 -----------------~~~piilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 108 -----------------SNKPVILVVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred -----------------cCCcEEEEEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhC
Confidence 147999999999976422 2223332 34589999999999999999998743
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.5e-17 Score=176.40 Aligned_cols=158 Identities=13% Similarity=0.150 Sum_probs=105.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee-EEEEECCeeEEEecC-CCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTKIQLLDL-PGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~-G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~ 130 (317)
.++++.+++|+.++|+|++|||||||+++|+|...+ .+ |.|.+.+ .+.++.- |-+...
T Consensus 634 ~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-----------~~GG~I~l~~-~Iayv~Q~p~Lfng-------- 693 (1622)
T PLN03130 634 SNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPP-----------RSDASVVIRG-TVAYVPQVSWIFNA-------- 693 (1622)
T ss_pred eceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhcc-----------CCCceEEEcC-eEEEEcCccccCCC--------
Confidence 578899999999999999999999999999999988 78 8888754 3333321 111110
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.-.|++.+... .+.++..+.++..++ ....+-.+||||||||+++|
T Consensus 694 -------TIreNI~fg~~-----~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 694 -------TVRDNILFGSP-----FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred -------CHHHHHhCCCc-----ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 11233333211 122344444444443 22344567999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHH----hcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~----l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||....+.+++. +....|+|++||+...-.. ...|+++.+.-+..
T Consensus 762 lLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~----------aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 762 YIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ----------VDRIILVHEGMIKE 819 (1622)
T ss_pred EEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh----------CCEEEEEeCCEEEE
Confidence 999999999999876665543 2234599999999754433 34567776665543
|
|
| >PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.3e-16 Score=155.16 Aligned_cols=157 Identities=25% Similarity=0.300 Sum_probs=112.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHH--HHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGR--QVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~--~~~~~ 136 (317)
..+++|+|++|||||||+|+|++... .++++|+||+++....+.++|.++.++||||+.+......+ ... .....
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~ 529 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAA 529 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHHHHH
Confidence 36899999999999999999999875 47899999999999999999999999999998654332211 111 11234
Q ss_pred hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcE
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAE 216 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~ 216 (317)
++.+|++++++|+......... ..+ .
T Consensus 530 i~~advvilViDat~~~s~~~~--~i~--------------------------------------------~-------- 555 (712)
T PRK09518 530 IERSELALFLFDASQPISEQDL--KVM--------------------------------------------S-------- 555 (712)
T ss_pred hhcCCEEEEEEECCCCCCHHHH--HHH--------------------------------------------H--------
Confidence 6789999999998654221110 000 0
Q ss_pred EEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHH-Hh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 217 VLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDK-LA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 217 i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~-l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+. ...+|+++|+||+|+...+. ++. +. .+.+++++||++|.|+++|.+.+.+.
T Consensus 556 --------------~~~--~~~~piIiV~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~ 619 (712)
T PRK09518 556 --------------MAV--DAGRALVLVFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEA 619 (712)
T ss_pred --------------HHH--HcCCCEEEEEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 000 12479999999999986432 221 11 23467899999999999999998776
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 620 ~~ 621 (712)
T PRK09518 620 LE 621 (712)
T ss_pred HH
Confidence 54
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.3e-17 Score=151.66 Aligned_cols=152 Identities=13% Similarity=0.137 Sum_probs=93.3
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
+....|.++||+|+||+||||||++|+..... .. +++ ..+.-.||+.+.+....+..+ ..++
T Consensus 101 L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~--~f------~ve-------qE~~g~~t~~~~~~l~~D~~~-~dfl-- 162 (582)
T KOG0062|consen 101 LTLSRGRRYGLVGRNGIGKSTLLRAIANGQVS--GF------HVE-------QEVRGDDTEALQSVLESDTER-LDFL-- 162 (582)
T ss_pred eeeecccccceeCCCCCcHHHHHHHHHhcCcC--cc------Cch-------hheeccchHHHhhhhhccHHH-HHHH--
Confidence 44556899999999999999999999973211 00 010 011112222221111111100 0000
Q ss_pred hccCcEEEEEecCCCchhhHHHHHH-HHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHH
Q 021103 137 SKSSDIVLMVLDASKSEGHRQILTK-ELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~~~~~~-~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~ 203 (317)
.++..+. ... ..+.+.. .|.-+|| +..++..+||||.|.|+++| |++|||||+||..++
T Consensus 163 ~~e~~l~-------~~~-~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av 234 (582)
T KOG0062|consen 163 AEEKELL-------AGL-TLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAV 234 (582)
T ss_pred Hhhhhhh-------ccc-hHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHH
Confidence 0000000 000 1122333 8888999 67788999999999999998 899999999999988
Q ss_pred HHHHHHhcc-cCcEEEecCC-CChhhHHHHHhc
Q 021103 204 YQILHEYKI-HNAEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 204 ~~~l~~l~~-~~~~i~~shd-~~~~~~~~~~~~ 234 (317)
.-+-.-+.. ..|+++|||| ..++.+|..+..
T Consensus 235 ~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH 267 (582)
T KOG0062|consen 235 AWLENYLQTWKITSLIVSHDRNFLNTVCTDIIH 267 (582)
T ss_pred HHHHHHHhhCCceEEEEeccHHHHHHHHHHHHH
Confidence 777666664 3599999999 556677765543
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.3e-17 Score=159.93 Aligned_cols=165 Identities=18% Similarity=0.174 Sum_probs=108.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEE---ecCCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQL---LDLPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~---~d~~g~~~~~~~~~~ 128 (317)
.+++...++|+..||+||+|||||||+|+|+|.... .. .+|.|.++|++... -...|+..+...-.+
T Consensus 47 ~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~---------~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~ 117 (613)
T KOG0061|consen 47 KGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLK---------LSGEILLNGRPRDSRSFRKISGYVQQDDVLLP 117 (613)
T ss_pred eCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCc---------ceEEEEECCccCchhhhhheeEEEcccccccc
Confidence 578889999999999999999999999999999864 12 78999999954211 011122221111000
Q ss_pred --hHHHHHhhhccCcEEEEEecC-CCchhhHHHHHHHHHHccc--cccccCC-----cccccceeeeeeE---------e
Q 021103 129 --RGRQVIAVSKSSDIVLMVLDA-SKSEGHRQILTKELEAVGL--RLNKRPP-----QIYFKKKKTGGIS---------F 189 (317)
Q Consensus 129 --~~~~~~~~~~~~d~i~~v~~~-~~~~~~~~~~~~~L~~~~l--~~~~~~~-----~LS~g~~qr~~ia---------l 189 (317)
-+.+.+..... +-+.. ....+...++++.+..+|+ ..+..++ .+||||++|+.+| +
T Consensus 118 ~LTV~EtL~f~A~-----lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iL 192 (613)
T KOG0061|consen 118 TLTVRETLRFSAL-----LRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSIL 192 (613)
T ss_pred cccHHHHHHHHHH-----hcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEE
Confidence 01111110000 00111 1223456678999999999 4666665 5999999999999 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh--hhHHHH
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV--DDLIDV 231 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~--~~~~~~ 231 (317)
++||||+|||......+++.+ ...| ++|++=|-+.. -++.|.
T Consensus 193 flDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~ 240 (613)
T KOG0061|consen 193 FLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDK 240 (613)
T ss_pred EecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhH
Confidence 999999999998866655555 3445 88888898543 344444
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=9.8e-17 Score=173.51 Aligned_cols=161 Identities=17% Similarity=0.171 Sum_probs=104.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+.++|+|+||||||||+++|+|...+ .+|.|.+.+ .+.++. .|.+.. +-.
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-----------~~G~i~~~~-~i~yv~Q~~~l~~------~Tv- 737 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEI-----------SEGRVWAER-SIAYVPQQAWIMN------ATV- 737 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECC-eEEEEeCCCccCC------CcH-
Confidence 477889999999999999999999999999999988 789988753 344332 111110 001
Q ss_pred HHHhhhccCcEEEEEecCCCchh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.+++.+... ..... ....+.+.++.+ |+ ....+..+||||||||+++| +++||
T Consensus 738 --------~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDE 808 (1560)
T PTZ00243 738 --------RGNILFFDE-EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDD 808 (1560)
T ss_pred --------HHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111111100 00000 001123334444 44 45778899999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh----cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l----~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+++.+ ....++|++||+......+ ..++++++..+.
T Consensus 809 P~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~a----------d~ii~l~~G~i~ 860 (1560)
T PTZ00243 809 PLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRA----------DYVVALGDGRVE 860 (1560)
T ss_pred ccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 99999998766665532 1234999999997654433 446666655443
|
|
| >TIGR03594 GTPase_EngA ribosome-associated GTPase EngA | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-15 Score=144.79 Aligned_cols=155 Identities=27% Similarity=0.278 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh--HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR--GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~--~~~~~~~~ 137 (317)
.+++++|.+|+|||||+|+|+|... .++++|+||+++....+.++|..+.++||||+.+..... ... ..+....+
T Consensus 173 ~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~ 252 (429)
T TIGR03594 173 IKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAI 252 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHHHHHH
Confidence 5799999999999999999999865 478999999999999999999999999999986543221 111 11223456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
+.+|++++++|+......... .+ +..
T Consensus 253 ~~ad~~ilV~D~~~~~~~~~~--~~--------------------------------------------~~~-------- 278 (429)
T TIGR03594 253 ERADVVLLVLDATEGITEQDL--RI--------------------------------------------AGL-------- 278 (429)
T ss_pred HhCCEEEEEEECCCCccHHHH--HH--------------------------------------------HHH--------
Confidence 789999999998654221110 00 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|+++|+||+|+. ..+..+ .+. .+.+++++||++|+|++++.+.+.+.
T Consensus 279 --------------~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~ 342 (429)
T TIGR03594 279 --------------IL--EAGKALVIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEV 342 (429)
T ss_pred --------------HH--HcCCcEEEEEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHH
Confidence 00 1147999999999998 333222 111 23578999999999999999988765
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 343 ~ 343 (429)
T TIGR03594 343 Y 343 (429)
T ss_pred H
Confidence 4
|
EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability. |
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=99.67 E-value=8.6e-16 Score=120.45 Aligned_cols=88 Identities=40% Similarity=0.596 Sum_probs=71.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC-CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~-~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 140 (317)
+|+|+|++|||||||+|+|+|.. ..+++++++|+.+..+.+.+++..+.++||||+.+...... ....+....+..+
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 80 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKS 80 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTE
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHC
Confidence 58999999999999999999974 45899999999999999999999999999999976433221 1233455566789
Q ss_pred cEEEEEecCCC
Q 021103 141 DIVLMVLDASK 151 (317)
Q Consensus 141 d~i~~v~~~~~ 151 (317)
|++++++++..
T Consensus 81 d~ii~vv~~~~ 91 (116)
T PF01926_consen 81 DLIIYVVDASN 91 (116)
T ss_dssp SEEEEEEETTS
T ss_pred CEEEEEEECCC
Confidence 99999999654
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd04163 Era Era subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.8e-15 Score=122.06 Aligned_cols=154 Identities=32% Similarity=0.412 Sum_probs=105.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.++|.... +++.+.+|.....+.....+..+.++||||+......... ........+..+
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~ 83 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDV 83 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhC
Confidence 47999999999999999999998643 6677888888888877777788999999998643221111 111223345678
Q ss_pred cEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.++++++....... ...+.+.+
T Consensus 84 d~i~~v~d~~~~~~~~~~~~~~~~-------------------------------------------------------- 107 (168)
T cd04163 84 DLVLFVVDASEPIGEGDEFILELL-------------------------------------------------------- 107 (168)
T ss_pred CEEEEEEECCCccCchHHHHHHHH--------------------------------------------------------
Confidence 999999887654111 11111100
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|.++|+||+|+. ..+... .+.. ..+++.+|+.++.+++++.+.|.+.+
T Consensus 108 -------------~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~ 168 (168)
T cd04163 108 -------------K--KSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL 168 (168)
T ss_pred -------------H--HhCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence 0 0136899999999998 333322 2222 24678999999999999999987653
|
Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. |
| >cd04171 SelB SelB subfamily | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.6e-15 Score=122.02 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=61.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.++++|++|||||||+|+|+|.... ....+++|.+.....+.+. +..+.++||||.... .......+..
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~-------~~~~~~~~~~ 74 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKF-------IKNMLAGAGG 74 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHH-------HHHHHhhhhc
Confidence 5899999999999999999985421 2235688988888888886 788999999996321 1223345668
Q ss_pred CcEEEEEecCCC
Q 021103 140 SDIVLMVLDASK 151 (317)
Q Consensus 140 ~d~i~~v~~~~~ 151 (317)
+|.+++++|...
T Consensus 75 ad~ii~V~d~~~ 86 (164)
T cd04171 75 IDLVLLVVAADE 86 (164)
T ss_pred CCEEEEEEECCC
Confidence 999999999754
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo |
| >COG0218 Predicted GTPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.8e-15 Score=124.94 Aligned_cols=57 Identities=28% Similarity=0.367 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
...-||++|++|+|||||+|+|+|.. ..+|..||.|+.+.- ..+++ .+.++|.|||-
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~-~~~lVDlPGYG 81 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD-ELRLVDLPGYG 81 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEE--EEecC-cEEEEeCCCcc
Confidence 35689999999999999999999977 569999999999863 33433 37789999973
|
|
| >cd01895 EngA2 EngA2 subfamily | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.6e-15 Score=121.37 Aligned_cols=154 Identities=27% Similarity=0.317 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~~~ 137 (317)
.+++++|.+|+|||||+|+|++... ...++|++|++...+.+..++.++.++||||+.......... ..+....+
T Consensus 3 ~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~ 82 (174)
T cd01895 3 IRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAI 82 (174)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHHHH
Confidence 4799999999999999999998764 467899999999888888999999999999986432111111 11223345
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|.+++++|...+..... ..++ ..
T Consensus 83 ~~~d~vi~v~d~~~~~~~~~--~~~~--------------------------------------------~~-------- 108 (174)
T cd01895 83 ERADVVLLVIDATEGITEQD--LRIA--------------------------------------------GL-------- 108 (174)
T ss_pred hhcCeEEEEEeCCCCcchhH--HHHH--------------------------------------------HH--------
Confidence 67899999998765422110 0000 00
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCCh--hhHH----HHhc------CCCeEEEeccccccHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD----KLAR------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~~----~l~~------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
+. ....|+++|+||+|+... ...+ .+.+ ....+++||+++.|++++.+.+..
T Consensus 109 --------------~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 109 --------------IL--EEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDE 172 (174)
T ss_pred --------------HH--hcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHH
Confidence 00 014799999999999755 2222 2221 246889999999999999998865
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 173 ~ 173 (174)
T cd01895 173 V 173 (174)
T ss_pred h
Confidence 4
|
This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. |
| >TIGR00092 GTP-binding protein YchF | Back alignment and domain information |
|---|
Probab=99.64 E-value=9.4e-15 Score=134.90 Aligned_cols=88 Identities=34% Similarity=0.540 Sum_probs=80.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCe-----------------eEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~ 124 (317)
..+||||.||+|||||||+|++... ++++|||||.+|..|.+.+.+. .+.++|.||+.....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 4789999999999999999999998 8999999999999999998762 578999999999888
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCC
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+.+.+.+++..++.+|.++++++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 88888889999999999999999864
|
This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor. |
| >PRK04213 GTP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.6e-15 Score=126.54 Aligned_cols=54 Identities=30% Similarity=0.392 Sum_probs=45.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI 119 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~ 119 (317)
..+|+++|++|||||||+|.|+|....++.+|++|+++.. +.++ ++.++||||+
T Consensus 9 ~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~ 62 (201)
T PRK04213 9 KPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVTRKPNH--YDWG--DFILTDLPGF 62 (201)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCceeeCceE--Eeec--ceEEEeCCcc
Confidence 4589999999999999999999988778889999998753 3343 6889999996
|
|
| >KOG0410 consensus Predicted GTP binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-16 Score=137.34 Aligned_cols=190 Identities=23% Similarity=0.212 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-
Q 021103 28 GQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY- 106 (317)
Q Consensus 28 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~- 106 (317)
..++.+..++++++...++++.. . ......+...|++||++|||||||+|+|++.-..-.+.-|.|+||+.-...+
T Consensus 147 rllr~kea~lrKeL~~vrrkr~~-r--~gr~~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lp 223 (410)
T KOG0410|consen 147 RLLRIKEAQLRKELQRVRRKRQR-R--VGREGESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLP 223 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-h--hccccCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCC
Confidence 33566677777776655544310 0 1112233568999999999999999999977655678899999998766655
Q ss_pred CCeeEEEecCCCccccccCCchh-HHHHHhhhccCcEEEEEecCCCchhhHH--HHHHHHHHccccccccCCccccccee
Q 021103 107 NDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSDIVLMVLDASKSEGHRQ--ILTKELEAVGLRLNKRPPQIYFKKKK 183 (317)
Q Consensus 107 ~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d~i~~v~~~~~~~~~~~--~~~~~L~~~~l~~~~~~~~LS~g~~q 183 (317)
.|..+.+.||.||+++.+...-. +...+.....+|++++++|.+.+....+ .+...|..+|..
T Consensus 224 sg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~-------------- 289 (410)
T KOG0410|consen 224 SGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVP-------------- 289 (410)
T ss_pred CCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCC--------------
Confidence 47778899999998876554322 3345566778999999999988765332 333334333320
Q ss_pred eeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 184 r~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
++|. + .-++=|-||+|.....-- .+..
T Consensus 290 --------~~pk-----------------------------l-------------~~mieVdnkiD~e~~~~e---~E~n 316 (410)
T KOG0410|consen 290 --------SEPK-----------------------------L-------------QNMIEVDNKIDYEEDEVE---EEKN 316 (410)
T ss_pred --------cHHH-----------------------------H-------------hHHHhhccccccccccCc---cccC
Confidence 0000 0 112335699987643210 1223
Q ss_pred CeEEEeccccccHHHHHHHHHHHh
Q 021103 264 NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 264 ~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+.+++||.+|.|++++++.+.+.+
T Consensus 317 ~~v~isaltgdgl~el~~a~~~kv 340 (410)
T KOG0410|consen 317 LDVGISALTGDGLEELLKAEETKV 340 (410)
T ss_pred CccccccccCccHHHHHHHHHHHh
Confidence 489999999999999999987654
|
|
| >TIGR00437 feoB ferrous iron transporter FeoB | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.5e-15 Score=146.70 Aligned_cols=147 Identities=24% Similarity=0.316 Sum_probs=104.3
Q ss_pred cCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccCcEEEEEe
Q 021103 69 GFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSDIVLMVL 147 (317)
Q Consensus 69 G~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d~i~~v~ 147 (317)
|.+|+|||||+|.++|....++++|++|++...|.+.++|.++.++||||..+...... ............+|++++++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~Vv 80 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVV 80 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEEe
Confidence 89999999999999999878999999999999999999999999999999865332211 11111111234689999999
Q ss_pred cCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhh
Q 021103 148 DASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD 227 (317)
Q Consensus 148 ~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~ 227 (317)
|+.+......... +
T Consensus 81 Dat~ler~l~l~~--------------------------------------------q---------------------- 94 (591)
T TIGR00437 81 DASNLERNLYLTL--------------------------------------------Q---------------------- 94 (591)
T ss_pred cCCcchhhHHHHH--------------------------------------------H----------------------
Confidence 8764321111000 0
Q ss_pred HHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 228 LIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 228 ~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||++|.|++++.+.+.+..
T Consensus 95 ----l~--~~~~PiIIVlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 95 ----LL--ELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ----HH--hcCCCEEEEEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 00 1147999999999986322 2233332 24689999999999999999997753
|
FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum. |
| >cd04160 Arfrp1 Arfrp1 subfamily | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.8e-15 Score=121.33 Aligned_cols=150 Identities=17% Similarity=0.165 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC----CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA----ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v----~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.++++|++|||||||++.|++...+. ...+.+|+....+.+.+++..+.++|+||..... ......+..
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 73 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR-------SLWDKYYAE 73 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhH-------HHHHHHhCC
Confidence 37899999999999999998865431 2234667777788899999999999999964211 112335678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ......++.. +++..
T Consensus 74 ~~~~v~vvd~~~~~~-~~~~~~~~~~----------------------------------------~~~~~--------- 103 (167)
T cd04160 74 CHAIIYVIDSTDRER-FEESKSALEK----------------------------------------VLRNE--------- 103 (167)
T ss_pred CCEEEEEEECchHHH-HHHHHHHHHH----------------------------------------HHhCh---------
Confidence 999999998764321 1111111111 00000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc---------CCCeEEEeccccccHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR---------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~---------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....|+++|+||+|+.... +.....+ ...++.+||++|.|++++.+.|.+
T Consensus 104 ---------------~~~~~p~ilv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 104 ---------------ALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred ---------------hhcCCCEEEEEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence 01247999999999986542 2222111 124888999999999999988754
|
Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.5e-16 Score=140.35 Aligned_cols=77 Identities=10% Similarity=0.032 Sum_probs=58.6
Q ss_pred HHHHHHHHHHccccc----------------------cccCCcccccceeeeeeE-------------eeecCCCCCCCH
Q 021103 156 RQILTKELEAVGLRL----------------------NKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDE 200 (317)
Q Consensus 156 ~~~~~~~L~~~~l~~----------------------~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~ 200 (317)
...+.++|+.+++.. +.++..||+||+||++++ +++||||++||+
T Consensus 124 ~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~ 203 (251)
T cd03273 124 QQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203 (251)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCH
Confidence 356777888888731 367899999999998775 789999999999
Q ss_pred HHHHHHHHHhc---ccCcEEEecCCCChhhHHHHH
Q 021103 201 KLCYQILHEYK---IHNAEVLFREDATVDDLIDVI 232 (317)
Q Consensus 201 ~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~ 232 (317)
.....+++.+. ...++|++||+.++.+.+|.+
T Consensus 204 ~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v 238 (251)
T cd03273 204 SHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVL 238 (251)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEE
Confidence 88766665554 333799999997666655543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-16 Score=161.19 Aligned_cols=183 Identities=17% Similarity=0.125 Sum_probs=123.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.+...+ ..|.|.+||.++.-+ |+.+ .+......+|
T Consensus 1157 k~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-----------~~G~I~IDgvdI~~i---gL~d-LRsrlsIIPQ 1221 (1381)
T KOG0054|consen 1157 KGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEP-----------AEGEILIDGVDISKI---GLHD-LRSRLSIIPQ 1221 (1381)
T ss_pred cCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCc-----------cCCeEEEcCeecccc---cHHH-HHhcCeeeCC
Confidence 788999999999999999999999999999999887 899999999987544 4322 1222222222
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--c-------cc----ccCCcccccceeeeeeE---------ee
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-------LN----KRPPQIYFKKKKTGGIS---------FN 190 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-------~~----~~~~~LS~g~~qr~~ia---------li 190 (317)
..-.+.. -+-+-+|..+. ...+.+.++|+..++ . ++ .--.++|-||||.+++| ++
T Consensus 1222 dPvLFsG--TvR~NLDPf~e-~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILv 1298 (1381)
T KOG0054|consen 1222 DPVLFSG--TVRFNLDPFDE-YSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILV 1298 (1381)
T ss_pred CCceecC--ccccccCcccc-cCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEE
Confidence 2211111 01111232221 233456777777665 1 22 22368999999999998 99
Q ss_pred ecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCC-ChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCC
Q 021103 191 STLPLTHVDEKL---CYQILHEYKIHNAEVLFREDA-TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPN 264 (317)
Q Consensus 191 lDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~-~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~ 264 (317)
+||.|++.|+++ +++.+++-=...|++.+.|.. ++- ....|+|+.++.+..-+....+....+
T Consensus 1299 LDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVm-----------d~DrVlVld~G~v~EfdsP~~Ll~~~~ 1365 (1381)
T KOG0054|consen 1299 LDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVM-----------DSDRVLVLDAGRVVEFDSPAELLSDKD 1365 (1381)
T ss_pred EecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhh-----------hcCeEEEeeCCeEeecCChHHHHhCCc
Confidence 999999999987 444444433456999999983 332 256799999988775555555554433
|
|
| >cd01861 Rab6 Rab6 subfamily | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.7e-14 Score=116.39 Aligned_cols=151 Identities=17% Similarity=0.211 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+.+.....+..|++|.+.....+.+++. .+.++|+||-... .......++.+|
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~-------~~~~~~~~~~~~ 74 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERF-------RSLIPSYIRDSS 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhccCC
Confidence 6899999999999999999998776778899999998888888875 4778999984211 111233467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
+++++.+...+.. ...+..++..+ ..
T Consensus 75 ~ii~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------- 100 (161)
T cd01861 75 VAVVVYDITNRQS-FDNTDKWIDDV----------------------------------------RD------------- 100 (161)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHHH----------------------------------------HH-------------
Confidence 9999998764322 11122222110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||.++.|++++.+.|.+.+
T Consensus 101 ---------~---~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l 161 (161)
T cd01861 101 ---------E---RGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred ---------h---CCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence 0 0114799999999999432 22222222 24578899999999999999997753
|
Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate |
| >KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=128.21 Aligned_cols=89 Identities=31% Similarity=0.412 Sum_probs=72.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-----hHHHHHhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-----RGRQVIAV 136 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-----~~~~~~~~ 136 (317)
-.||+||+||+|||||.|.+.|... +++..+.||+....|.+.-+..++.++||||+......... ........
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423|consen 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHH
Confidence 4799999999999999999999875 69999999999999999999999999999999764332211 11223346
Q ss_pred hccCcEEEEEecCCC
Q 021103 137 SKSSDIVLMVLDASK 151 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~ 151 (317)
++.+|+++.+.|+..
T Consensus 153 ~q~AD~vvVv~Das~ 167 (379)
T KOG1423|consen 153 AQNADCVVVVVDASA 167 (379)
T ss_pred HhhCCEEEEEEeccC
Confidence 678999999999874
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.6e-16 Score=137.51 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=57.4
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHhc---c-cCcEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l~---~-~~~~i~ 218 (317)
...+.|+.+|+ .+++++.+||+||+||+.+| +++||||++||+.....+++.+. . ..++|+
T Consensus 148 ~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIi 227 (261)
T cd03271 148 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVV 227 (261)
T ss_pred HHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45667888888 36889999999999999876 89999999999998665555443 3 349999
Q ss_pred ecCCCChhhHHH
Q 021103 219 FREDATVDDLID 230 (317)
Q Consensus 219 ~shd~~~~~~~~ 230 (317)
++|+.+..+.+|
T Consensus 228 itH~~~~i~~aD 239 (261)
T cd03271 228 IEHNLDVIKCAD 239 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999976554443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=156.39 Aligned_cols=165 Identities=16% Similarity=0.195 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+.+||+|+.|||||||+.+|+|+... .+|.+.++|. +.++. |
T Consensus 538 ~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-----------~sG~v~v~gs-iaYv~----------------Q 589 (1381)
T KOG0054|consen 538 KDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPK-----------LSGSVAVNGS-VAYVP----------------Q 589 (1381)
T ss_pred cceeEEecCCCEEEEECCCCCCHHHHHHHHhcCccc-----------ccceEEEcCe-EEEec----------------c
Confidence 578899999999999999999999999999999988 8999999886 33332 2
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ .-.|+|+|... .++++.++.++...+ ....+--+||||||||+.+|
T Consensus 590 ~pWI~ngTvreNILFG~~-----~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI 664 (1381)
T KOG0054|consen 590 QPWIQNGTVRENILFGSP-----YDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI 664 (1381)
T ss_pred ccHhhCCcHHHhhhcCcc-----ccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE
Confidence 11111 12355555432 223344444444433 34456679999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHh----cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY----KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l----~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++|-|++++|...-+.+.+.. -...|+|++||...+-. ....|+|+..+-+...+..+++.
T Consensus 665 YLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~----------~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 665 YLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLP----------HADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhh----------hCCEEEEecCCeEecccCHHHHH
Confidence 9999999999998865555543 34569999999644332 34668888887776665554443
|
|
| >cd00880 Era_like Era (E | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=115.29 Aligned_cols=150 Identities=25% Similarity=0.306 Sum_probs=106.0
Q ss_pred EEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHHHHHhhhccCcEEE
Q 021103 67 LIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 67 liG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~ 144 (317)
|+|++|||||||+|.|++.... .++.+++|.+.....+.+. +..+.++|+||+.................+..+|.++
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il 80 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLIL 80 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEE
Confidence 5899999999999999998765 7888999999988877776 6789999999986544332221223344667899999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
++++........... +...
T Consensus 81 ~v~~~~~~~~~~~~~--~~~~----------------------------------------------------------- 99 (163)
T cd00880 81 FVVDADLRADEEEEK--LLEL----------------------------------------------------------- 99 (163)
T ss_pred EEEeCCCCCCHHHHH--HHHH-----------------------------------------------------------
Confidence 999876543221110 0000
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChhhHHHH----------hcCCCeEEEeccccccHHHHHHHHHHH
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----------ARQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l----------~~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ....|.++|+||+|+......... ....+++++||.++.|++++.+.+.+.
T Consensus 100 -------~~--~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 100 -------LR--ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEA 162 (163)
T ss_pred -------HH--hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhh
Confidence 00 124789999999999875433221 123568889999999999999988764
|
coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-14 Score=121.09 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--h----hHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--G----RGRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~----~~~~~ 133 (317)
..+|+|+|.+|||||||+|.|++.. ..+++.+++|+.+.... + +.++.++||||+........ . .....
T Consensus 24 ~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 100 (196)
T PRK00454 24 GPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE--V-NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEY 100 (196)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe--c-CCeEEEeCCCCCCCcCCCchHHHHHHHHHHHH
Confidence 4689999999999999999999963 45788899998875433 2 46789999999743211100 0 01111
Q ss_pred HhhhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
+......+.++++++...+.... ..+.+++.
T Consensus 101 ~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~------------------------------------------------ 132 (196)
T PRK00454 101 LRTRENLKGVVLLIDSRHPLKELDLQMIEWLK------------------------------------------------ 132 (196)
T ss_pred HHhCccceEEEEEEecCCCCCHHHHHHHHHHH------------------------------------------------
Confidence 11222335566666544321111 01111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH----H---hc--CCCeEEEeccccccHHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----L---AR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~----l---~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
....|+++|+||+|+...++.+. + .. ...++++||+++.|++++.+.|
T Consensus 133 -----------------------~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i 189 (196)
T PRK00454 133 -----------------------EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAI 189 (196)
T ss_pred -----------------------HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHH
Confidence 11468899999999986543221 1 11 3578999999999999999999
Q ss_pred HHHhC
Q 021103 284 WEEMG 288 (317)
Q Consensus 284 ~~~l~ 288 (317)
.+.+.
T Consensus 190 ~~~~~ 194 (196)
T PRK00454 190 AKWLA 194 (196)
T ss_pred HHHhc
Confidence 87763
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.9e-16 Score=145.05 Aligned_cols=173 Identities=14% Similarity=0.102 Sum_probs=103.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCc---cccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI---IEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~---~~~~~~~~~~ 129 (317)
.+..++...|+++||+|+|||||||+|++|.|...|+.. ..+ ++.-...+.--+.-.+ .........+
T Consensus 92 kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~--------~~d-~y~ls~e~~ps~~~av~~v~~~~~~e~~r 162 (614)
T KOG0927|consen 92 KDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE--------HID-FYLLSREIEPSEKQAVQAVVMETDHERKR 162 (614)
T ss_pred eeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc--------ccc-hhhhcccCCCchHHHHHHHhhhhHHHHHH
Confidence 566788889999999999999999999999999987321 111 1111111100000000 0000000000
Q ss_pred HHHHHhhhcc-CcE-----EEE---EecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------
Q 021103 130 GRQVIAVSKS-SDI-----VLM---VLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 130 ~~~~~~~~~~-~d~-----i~~---v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
.......+.. .|- +.. ..+..+......++..+|..+|+ ...+....||||++.|+++|
T Consensus 163 le~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~L 242 (614)
T KOG0927|consen 163 LEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDL 242 (614)
T ss_pred HHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCE
Confidence 0000000000 010 000 00111122223455667777887 67888999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhccc-C-cEEEecCC-CChhhHHHHHhc
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIH-N-AEVLFRED-ATVDDLIDVIEG 234 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~-~-~~i~~shd-~~~~~~~~~~~~ 234 (317)
+++||||+|||++++.-+-..+... . ++|+++|+ ..+..+|..+..
T Consensus 243 LLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~ 291 (614)
T KOG0927|consen 243 LLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIH 291 (614)
T ss_pred EEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhhe
Confidence 8999999999999876666666533 3 69999999 668888887655
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.9e-15 Score=136.16 Aligned_cols=156 Identities=21% Similarity=0.118 Sum_probs=104.7
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
.+++++..|+.|-|+|.||||||||++.|+|+..| .+|.|.++|.++.- +.....++.
T Consensus 341 PiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~P-----------qsG~I~ldg~pV~~-----------e~ledYR~L 398 (546)
T COG4615 341 PINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP-----------QSGEILLDGKPVSA-----------EQLEDYRKL 398 (546)
T ss_pred ceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCC-----------CCCceeECCccCCC-----------CCHHHHHHH
Confidence 45677778999999999999999999999999999 99999999988631 111111122
Q ss_pred H-hhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-----cc--cccCCcccccceeeeeeE---------eeecCCCC
Q 021103 134 I-AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-----RL--NKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 134 ~-~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~--~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
+ ..+.+..+..-.+... .....+.+..+|+++.+ .. +-..-.||.|||+|+++. +++||.-+
T Consensus 399 fSavFsDyhLF~~ll~~e-~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 399 FSAVFSDYHLFDQLLGPE-GKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHhhhHhhhHhhhCCc-cCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 1 2233222211111111 11234567777777766 11 223568999999999764 89999999
Q ss_pred CCCHHHHHH----HHHHhcccC-cEEEecCCCChhhHHHHH
Q 021103 197 HVDEKLCYQ----ILHEYKIHN-AEVLFREDATVDDLIDVI 232 (317)
Q Consensus 197 ~LD~~~~~~----~l~~l~~~~-~~i~~shd~~~~~~~~~~ 232 (317)
+-||.-.+. ++-.++..| |++.+|||...-.-.|++
T Consensus 478 DQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 999987544 455666555 999999995544434443
|
|
| >cd00879 Sar1 Sar1 subfamily | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.6e-14 Score=120.07 Aligned_cols=80 Identities=21% Similarity=0.322 Sum_probs=59.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++|+|++|||||||++.+++.... ....|..+..+.+.+++.++.++|+||..... ......++.++.
T Consensus 20 ~ki~ilG~~~~GKStLi~~l~~~~~~---~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~ad~ 89 (190)
T cd00879 20 AKILFLGLDNAGKTTLLHMLKDDRLA---QHVPTLHPTSEELTIGNIKFKTFDLGGHEQAR-------RLWKDYFPEVDG 89 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc---ccCCccCcceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhccCCE
Confidence 47899999999999999999976532 22346677888999999999999999853210 112234577899
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
+++++|..+.
T Consensus 90 iilV~D~~~~ 99 (190)
T cd00879 90 IVFLVDAADP 99 (190)
T ss_pred EEEEEECCcH
Confidence 9999987643
|
Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.67 Aligned_cols=152 Identities=16% Similarity=0.133 Sum_probs=107.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC-CeeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++.+++|+.+-|.|+||||||||+++|+|+-+- -+|.|.+. +..+-++.-..|.+.. ..+
T Consensus 410 ~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~-----------g~G~I~~P~~~~~lflpQ~PY~p~G-----tLr 473 (604)
T COG4178 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPW-----------GSGRISMPADSALLFLPQRPYLPQG-----TLR 473 (604)
T ss_pred ccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCcc-----------CCCceecCCCCceEEecCCCCCCCc-----cHH
Confidence 567888899999999999999999999999999876 56777665 4445555433333211 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-----ccc---ccCCcccccceeeeeeE---------eeecCC
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-----RLN---KRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-----~~~---~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
+. +.+..... ....+.+.+.|.++|+ .++ .=-..||+|||||+++| +++||.
T Consensus 474 e~---------l~YP~~~~--~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEA 542 (604)
T COG4178 474 EA---------LCYPNAAP--DFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEA 542 (604)
T ss_pred HH---------HhCCCCCC--CCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecc
Confidence 11 11111111 1234567778888887 111 11357999999999999 899999
Q ss_pred CCCCCHHHHHHHHHHhcc--cC-cEEEecCCCChhhHHHH
Q 021103 195 LTHVDEKLCYQILHEYKI--HN-AEVLFREDATVDDLIDV 231 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l~~--~~-~~i~~shd~~~~~~~~~ 231 (317)
|++||++....+.+.++. .+ ++|.|.|..++..+-+.
T Consensus 543 TsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 543 TSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred hhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhh
Confidence 999999998888888875 34 89999999888776544
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-15 Score=133.93 Aligned_cols=62 Identities=8% Similarity=-0.070 Sum_probs=46.7
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHH
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDV 231 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~ 231 (317)
.+.++..||+||+||+++| +++||||++||+.....+++.+. ...++++++|+.++.+++|+
T Consensus 152 ~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~ 229 (243)
T cd03272 152 EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADK 229 (243)
T ss_pred ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCE
Confidence 3567889999999998765 78899999999998766655554 32367777887666665554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-15 Score=130.93 Aligned_cols=58 Identities=5% Similarity=-0.021 Sum_probs=45.4
Q ss_pred cccccCCcccccceeeeee-------------------EeeecCCCCCCCHHHHHHH---HHHhcc-cCcEEEecCCCCh
Q 021103 169 RLNKRPPQIYFKKKKTGGI-------------------SFNSTLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 169 ~~~~~~~~LS~g~~qr~~i-------------------alilDEPt~~LD~~~~~~~---l~~l~~-~~~~i~~shd~~~ 225 (317)
.+++++..||+||+||+.+ .+++||||++||+.....+ +..+.. ..++|++||+.+.
T Consensus 116 ~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~ 195 (213)
T cd03279 116 FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEEL 195 (213)
T ss_pred HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHH
Confidence 5678889999999999976 2788999999999875554 444444 3499999999654
Q ss_pred h
Q 021103 226 D 226 (317)
Q Consensus 226 ~ 226 (317)
.
T Consensus 196 ~ 196 (213)
T cd03279 196 K 196 (213)
T ss_pred H
Confidence 4
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR00231 small_GTP small GTP-binding protein domain | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.2e-14 Score=115.70 Aligned_cols=57 Identities=33% Similarity=0.406 Sum_probs=50.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGI 119 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~ 119 (317)
.+++++|++|||||||++.+.+...+.+.++++|.+.....+.+++ ..+.++|+||.
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~ 60 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQ 60 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCc
Confidence 3799999999999999999999887778889999999888888888 67888999994
|
This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model. |
| >cd01889 SelB_euk SelB subfamily | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.7e-14 Score=119.55 Aligned_cols=147 Identities=22% Similarity=0.248 Sum_probs=99.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc-------CCCCCccccceeeeeeEEEEEC--------------CeeEEEecCCCcccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT-------HSEAASYEFTTLTCIPGIIHYN--------------DTKIQLLDLPGIIEG 122 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~-------~~~v~~~p~tT~~~~~G~i~~~--------------g~~i~~~d~~g~~~~ 122 (317)
+|+++|++|+|||||++++++. ..+....+++|.+.....+.+. +..+.++||||...
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 5899999999999999999973 1234556789998887777765 66889999999632
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
...........+|.+++++|+......... +.+.
T Consensus 81 ------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~--~~~~-------------------------------------- 114 (192)
T cd01889 81 ------LIRTIIGGAQIIDLMLLVVDATKGIQTQTA--ECLV-------------------------------------- 114 (192)
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCCccHHHH--HHHH--------------------------------------
Confidence 123444455678999999987643211100 0000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHHh------------cCCCeE
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKLA------------RQPNSV 266 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l~------------~~~~~v 266 (317)
+ +. ....|+++|+||+|+...++. +.+. ....++
T Consensus 115 ---~----------------------~~-----~~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 164 (192)
T cd01889 115 ---I----------------------GE-----ILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPII 164 (192)
T ss_pred ---H----------------------HH-----HcCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEE
Confidence 0 00 013689999999999754321 1111 123589
Q ss_pred EEeccccccHHHHHHHHHHHh
Q 021103 267 VISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 267 ~iSa~~~~~i~~l~~~i~~~l 287 (317)
++||+++.|+++|.+.+.+.+
T Consensus 165 ~iSa~~g~gi~~L~~~l~~~~ 185 (192)
T cd01889 165 PVSAKPGGGEAELGKDLNNLI 185 (192)
T ss_pred EEeccCCCCHHHHHHHHHhcc
Confidence 999999999999999987654
|
SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-15 Score=131.48 Aligned_cols=59 Identities=15% Similarity=0.092 Sum_probs=44.1
Q ss_pred cccCCcccccceeee------eeE---------eeecCCCCCCCHHHHH-HHHH---Hhcc--cCcEEEecCCCChhhHH
Q 021103 171 NKRPPQIYFKKKKTG------GIS---------FNSTLPLTHVDEKLCY-QILH---EYKI--HNAEVLFREDATVDDLI 229 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~------~ia---------lilDEPt~~LD~~~~~-~~l~---~l~~--~~~~i~~shd~~~~~~~ 229 (317)
++.+..||+||+||+ +++ +++|||+++||+.... .+.+ ++.. ..++|++||+.++.+.+
T Consensus 110 ~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~ 189 (204)
T cd03240 110 LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA 189 (204)
T ss_pred hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhC
Confidence 667899999999974 333 8999999999998766 5444 4443 23899999996654433
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.4e-16 Score=135.13 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=51.6
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHH---HHHhcccCcEEEecCCCChhhHHHHHh
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQI---LHEYKIHNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~---l~~l~~~~~~i~~shd~~~~~~~~~~~ 233 (317)
.++++..||+||+||++++ +++||||++||+.....+ ++.+...+++|++||+..+.+.+|
T Consensus 121 ~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d--- 197 (212)
T cd03274 121 SWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELAD--- 197 (212)
T ss_pred cccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCC---
Confidence 4566789999999988655 778999999999885554 444444458999999976655443
Q ss_pred cccceeeeeEEEeccc
Q 021103 234 GNRKYMKCVYVYNKID 249 (317)
Q Consensus 234 ~~~~~~p~i~v~NK~D 249 (317)
.+++++|..
T Consensus 198 -------~v~~~~~~~ 206 (212)
T cd03274 198 -------RLVGIYKTN 206 (212)
T ss_pred -------EEEEEEecC
Confidence 466666654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd00881 GTP_translation_factor GTP translation factor family | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=116.49 Aligned_cols=147 Identities=22% Similarity=0.259 Sum_probs=100.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCC----------------ccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAA----------------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~----------------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
+|+|+|.+|||||||+|+|++...... ...++|.+.....+.+.+..+.++||||....
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~----- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDF----- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHH-----
Confidence 389999999999999999998865422 13456777766777777888999999996431
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
.......+..+|.+++++|........ ..+.+.
T Consensus 76 --~~~~~~~~~~~d~~i~v~d~~~~~~~~--~~~~~~------------------------------------------- 108 (189)
T cd00881 76 --SSEVIRGLSVSDGAILVVDANEGVQPQ--TREHLR------------------------------------------- 108 (189)
T ss_pred --HHHHHHHHHhcCEEEEEEECCCCCcHH--HHHHHH-------------------------------------------
Confidence 122334456899999999876432110 111110
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-------HHH-Hh---------------cCCC
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-------VDK-LA---------------RQPN 264 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-------~~~-l~---------------~~~~ 264 (317)
. +. ....|+++|+||+|+...+. +.. +. ...+
T Consensus 109 -~----------------------~~--~~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T cd00881 109 -I----------------------AR--EGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNGLLVP 163 (189)
T ss_pred -H----------------------HH--HCCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccCCcce
Confidence 0 00 01479999999999986322 111 11 1245
Q ss_pred eEEEeccccccHHHHHHHHHHHh
Q 021103 265 SVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 265 ~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
++++||.+++|++++.+.+...+
T Consensus 164 v~~~Sa~~g~gi~~l~~~l~~~l 186 (189)
T cd00881 164 IVPGSALTGIGVEELLEAIVEHL 186 (189)
T ss_pred EEEEecccCcCHHHHHHHHHhhC
Confidence 78899999999999999998875
|
This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. |
| >PRK15467 ethanolamine utilization protein EutP; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=117.00 Aligned_cols=140 Identities=22% Similarity=0.283 Sum_probs=91.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+|+++|++|+|||||+|+|+|..... ...+.+.+.+.. .+||||.+..... ........++.+|++
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~---------~~~~~v~~~~~~--~iDtpG~~~~~~~---~~~~~~~~~~~ad~i 68 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA---------RKTQAVEFNDKG--DIDTPGEYFSHPR---WYHALITTLQDVDML 68 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC---------ccceEEEECCCC--cccCCccccCCHH---HHHHHHHHHhcCCEE
Confidence 69999999999999999999875321 134555665542 5899997533211 122333446789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|....... ....+
T Consensus 69 l~v~d~~~~~s~---~~~~~------------------------------------------------------------ 85 (158)
T PRK15467 69 IYVHGANDPESR---LPAGL------------------------------------------------------------ 85 (158)
T ss_pred EEEEeCCCcccc---cCHHH------------------------------------------------------------
Confidence 999987643210 00000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh--hHHH-HhcC---CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDK-LARQ---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~-l~~~---~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+ + ...+|+++++||+|+...+ .+.. +.+. .+.+++||+++.|+++|.+.+.+.+..
T Consensus 86 -----~~-~---~~~~~ii~v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 86 -----LD-I---GVSKRQIAVISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred -----Hh-c---cCCCCeEEEEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence 00 0 0136889999999986432 1222 2222 378899999999999999999888754
|
|
| >cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.4e-13 Score=114.29 Aligned_cols=147 Identities=20% Similarity=0.163 Sum_probs=98.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---CeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.++|+|++|||||||+|+|++........+++|.+.....+.+. +..+.++||||..... ......+..+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~-------~~~~~~~~~~ 74 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFT-------NMRARGASLT 74 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHH-------HHHHHHHhhc
Confidence 58999999999999999999876555566778887766667664 6789999999963210 1112234678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++........ ....+ ..
T Consensus 75 d~il~v~d~~~~~~~~--~~~~~--------------------------------------------~~----------- 97 (168)
T cd01887 75 DIAILVVAADDGVMPQ--TIEAI--------------------------------------------KL----------- 97 (168)
T ss_pred CEEEEEEECCCCccHH--HHHHH--------------------------------------------HH-----------
Confidence 9999999876432110 00000 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh--hH-HHHh-----------cCCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DV-DKLA-----------RQPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~-~~l~-----------~~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|.++|+||+|+.... .. +.+. .....+++||.++.|+++|.+.|.+.
T Consensus 98 -----------~~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~ 164 (168)
T cd01887 98 -----------AK--AANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDLLEAILLL 164 (168)
T ss_pred -----------HH--HcCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHHHHHHHHh
Confidence 00 0147899999999987431 11 1111 11358899999999999999998765
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
.
T Consensus 165 ~ 165 (168)
T cd01887 165 A 165 (168)
T ss_pred h
Confidence 3
|
IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s. |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-15 Score=139.79 Aligned_cols=148 Identities=16% Similarity=0.213 Sum_probs=94.2
Q ss_pred CcEEEEeC-----CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch
Q 021103 54 GFEVTKFG-----HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG 128 (317)
Q Consensus 54 ~~~~~~~~-----g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~ 128 (317)
+|.+++++ |++++++||||-||||+.++|+|.+.| ++|. ..+..+.+ -|.++... ..+
T Consensus 354 ~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikP-----------deg~--~~~~~vSy--KPQyI~~~--~~g 416 (591)
T COG1245 354 DFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKP-----------DEGS--EEDLKVSY--KPQYISPD--YDG 416 (591)
T ss_pred ceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccC-----------CCCC--CccceEee--cceeecCC--CCC
Confidence 66666554 688999999999999999999999988 6664 11222221 12222211 111
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCC
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTH 197 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~ 197 (317)
.+.+++.....+. .. ..-.-.+++..+++ .++++...|||||.||++|| +++|||.++
T Consensus 417 tV~~~l~~~~~~~--------~~---~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~ 485 (591)
T COG1245 417 TVEDLLRSAIRSA--------FG---SSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAY 485 (591)
T ss_pred cHHHHHHHhhhhh--------cc---cchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhh
Confidence 2233332211110 00 00112234455555 57889999999999999988 899999999
Q ss_pred CCHHH---HHHHHHHhccc--CcEEEecCCCChhhHH
Q 021103 198 VDEKL---CYQILHEYKIH--NAEVLFREDATVDDLI 229 (317)
Q Consensus 198 LD~~~---~~~~l~~l~~~--~~~i~~shd~~~~~~~ 229 (317)
||.+. +..+++.+-.. .+.+++.||.-+.+.+
T Consensus 486 LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 486 LDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred ccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhh
Confidence 99987 34555555433 3889999997765543
|
|
| >TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.7e-14 Score=118.23 Aligned_cols=87 Identities=21% Similarity=0.210 Sum_probs=57.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch------hHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG------RGRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~------~~~~~ 133 (317)
...++|+|++|+|||||+|.|++.. ..+++.+++|.++....+ + ..+.++||||+......... ....+
T Consensus 18 ~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~-~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 18 GPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N-DGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C-CcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 4689999999999999999999974 347889999988765433 3 36889999997532111100 01111
Q ss_pred HhhhccCcEEEEEecCCC
Q 021103 134 IAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~ 151 (317)
+.....++.++++++...
T Consensus 95 l~~~~~~~~ii~vvd~~~ 112 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRH 112 (179)
T ss_pred HHhChhhcEEEEEecCCC
Confidence 111223577888887654
|
Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=9.8e-14 Score=114.56 Aligned_cols=54 Identities=33% Similarity=0.383 Sum_probs=42.4
Q ss_pred EEEEcCCCCcHHHHHHHHh--ccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccc
Q 021103 65 VALIGFPSVGKSTLLTLLT--GTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~--g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~ 121 (317)
|+++|++|||||||+|.|+ +...+.++.+++|..... +.+++ .+.++|+||+..
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~D~~g~~~ 57 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FNVND-KFRLVDLPGYGY 57 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EEccC-eEEEecCCCccc
Confidence 7999999999999999999 555667888888877643 23333 788999999754
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >cd04155 Arl3 Arl3 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=115.16 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=54.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++|+|+||||||||++.|+|..... ...|.......+.++|..+.++|++|.... .......++.++
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~~---~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~-------~~~~~~~~~~~~ 83 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDISH---ITPTQGFNIKTVQSDGFKLNVWDIGGQRAI-------RPYWRNYFENTD 83 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCcc---cCCCCCcceEEEEECCEEEEEEECCCCHHH-------HHHHHHHhcCCC
Confidence 3579999999999999999999974320 011111222377788899999999985321 011223457789
Q ss_pred EEEEEecCCC
Q 021103 142 IVLMVLDASK 151 (317)
Q Consensus 142 ~i~~v~~~~~ 151 (317)
.+++++|...
T Consensus 84 ~ii~v~D~~~ 93 (173)
T cd04155 84 CLIYVIDSAD 93 (173)
T ss_pred EEEEEEeCCC
Confidence 9999998764
|
Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation. |
| >cd01868 Rab11_like Rab11-like | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-13 Score=112.03 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=100.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|.++.+.....+.+++. .+.++|+||..... ......+..++
T Consensus 5 ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~~ 77 (165)
T cd01868 5 KIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR-------AITSAYYRGAV 77 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------HHHHHHHCCCC
Confidence 7999999999999999999987655555677777777777888775 46789999853210 11123456789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+... ...+..++.. +..
T Consensus 78 ~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~--------- 103 (165)
T cd01868 78 GALLVYDITKKQT-FENVERWLKE--------------------------------------------LRD--------- 103 (165)
T ss_pred EEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHH---------
Confidence 8999988764322 1222222211 100
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 104 ----------~--~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i 164 (165)
T cd01868 104 ----------H--ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred ----------h--CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 0 01137999999999986432 2222222 23478899999999999999987653
|
Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP |
| >cd04142 RRP22 RRP22 subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=116.19 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=98.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccC-CchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASE-GKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~-~~~~~~~~~~~~~~~ 140 (317)
+|+|+|.+|+|||||++.+++...+....|.++.+...-.+.++|. .+.++||||....... +..+.......+..+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~a 81 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNS 81 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccC
Confidence 6899999999999999999876544333455554544456677885 4668999997432111 101111122346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|...+.. .+.+..+++. +++
T Consensus 82 d~iilv~D~~~~~S-~~~~~~~~~~----------------------------------------i~~------------ 108 (198)
T cd04142 82 RAFILVYDICSPDS-FHYVKLLRQQ----------------------------------------ILE------------ 108 (198)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999999865421 1112111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh--c-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~--~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.........|+++|.||+|+... ++...+. . ..+.+.+||++|.|++++.+.+.+..
T Consensus 109 ----------~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~ 173 (198)
T cd04142 109 ----------TRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA 173 (198)
T ss_pred ----------hcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence 00000124799999999999543 2222222 1 24578999999999999999887653
|
RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. |
| >cd04159 Arl10_like Arl10-like subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-13 Score=111.78 Aligned_cols=147 Identities=20% Similarity=0.293 Sum_probs=91.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEE
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVL 144 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~ 144 (317)
|+|+|++|||||||+|+|++........|.+. .....+..++..+.++|+||..... ......+..+|.++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d~ii 72 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVG--FNMRKVTKGNVTLKVWDLGGQPRFR-------SMWERYCRGVNAIV 72 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCccCCCC--cceEEEEECCEEEEEEECCCCHhHH-------HHHHHHHhcCCEEE
Confidence 79999999999999999999864433333222 2233456667778899999853211 11223467789999
Q ss_pred EEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCC
Q 021103 145 MVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDAT 224 (317)
Q Consensus 145 ~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~ 224 (317)
+++|....... ......+..+ +..
T Consensus 73 ~v~d~~~~~~~-~~~~~~~~~~----------------------------------------~~~--------------- 96 (159)
T cd04159 73 YVVDAADRTAL-EAAKNELHDL----------------------------------------LEK--------------- 96 (159)
T ss_pred EEEECCCHHHH-HHHHHHHHHH----------------------------------------HcC---------------
Confidence 99987643211 1111111110 000
Q ss_pred hhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 225 VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 225 ~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
......|+++|+||.|+......+ .+. .....+.+|+.+|.|++++.+.|.+
T Consensus 97 ---------~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 97 ---------PSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ---------hhhcCCCEEEEEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence 001247999999999987543222 111 1134689999999999999998865
|
Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. |
| >smart00178 SAR Sar1p-like members of the Ras-family of small GTPases | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.2e-13 Score=114.59 Aligned_cols=149 Identities=18% Similarity=0.183 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ .+|..+..+.+.+++.++.++|+||..... ......+..+|.
T Consensus 18 ~~i~ivG~~~~GKTsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~ad~ 87 (184)
T smart00178 18 AKILFLGLDNAGKTTLLHMLKNDRLA--QH-QPTQHPTSEELAIGNIKFTTFDLGGHQQAR-------RLWKDYFPEVNG 87 (184)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc--cc-CCccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 58999999999999999999986422 11 346677778888888999999999964311 112234578999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|...+... ......+.. +++
T Consensus 88 ii~vvD~~~~~~~-~~~~~~l~~----------------------------------------l~~-------------- 112 (184)
T smart00178 88 IVYLVDAYDKERF-AESKRELDA----------------------------------------LLS-------------- 112 (184)
T ss_pred EEEEEECCcHHHH-HHHHHHHHH----------------------------------------HHc--------------
Confidence 9999998654221 111111111 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCC---hhhHHHHh--------------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLA--------------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~---~~~~~~l~--------------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.. .....|+++|+||+|+.. .+++.... +...++++||+++.|++++.+.|.+
T Consensus 113 --------~~--~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 113 --------DE--ELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred --------Ch--hhcCCCEEEEEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHh
Confidence 00 012479999999999863 33333211 1223788999999999999998865
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 183 ~ 183 (184)
T smart00178 183 Y 183 (184)
T ss_pred h
Confidence 3
|
Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus. |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-15 Score=131.32 Aligned_cols=58 Identities=10% Similarity=0.002 Sum_probs=43.4
Q ss_pred cCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCChhhHHH
Q 021103 173 RPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDATVDDLID 230 (317)
Q Consensus 173 ~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~~~~~~~ 230 (317)
++..||+||+||+.++ +++||||++||+.....+ +..+...+ ++|++||+.++.+.+|
T Consensus 152 ~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 152 DMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred hHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCC
Confidence 3489999999998665 788999999999875544 44444334 8999999966554443
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-14 Score=136.76 Aligned_cols=174 Identities=11% Similarity=0.165 Sum_probs=122.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-------CCccccccC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-------PGIIEGASE 125 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-------~g~~~~~~~ 125 (317)
.+++|.+..|+++||.|--|||+|-|+++|.|..++ ..|+|.++|.++.+.+. .+|.+..+.
T Consensus 276 ~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~-----------~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk 344 (500)
T COG1129 276 RDVSFTVRAGEILGIAGLVGAGRTELARALFGARPA-----------SSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRK 344 (500)
T ss_pred eCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcC-----------CCceEEECCEEccCCCHHHHHHcCCEeCCcccc
Confidence 578899999999999999999999999999998777 78999999998865441 122222222
Q ss_pred CchhHHHHHhhhccCcEEEEE-ec------CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE-------
Q 021103 126 GKGRGRQVIAVSKSSDIVLMV-LD------ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------- 188 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v-~~------~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------- 188 (317)
..+.+.. ..-.+++.+. +. ..+.....+.+.++...+++ ..+.++..||||.+|++.|+
T Consensus 345 ~~Gl~l~----~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p 420 (500)
T COG1129 345 SEGLVLD----MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDP 420 (500)
T ss_pred cCcCcCC----CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCC
Confidence 2221100 0001111110 10 11223345567788888988 67788999999999999998
Q ss_pred --eeecCCCCCCCHHH---HHHHHHHhcccC-cEEEecCC-CChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 --FNSTLPLTHVDEKL---CYQILHEYKIHN-AEVLFRED-ATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 --lilDEPt~~LD~~~---~~~~l~~l~~~~-~~i~~shd-~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||||.|.|.-. +..+++++...| ++|++|.+ +++-.+|| .|+|++..-+.
T Consensus 421 ~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~D----------RIlVm~~Gri~ 480 (500)
T COG1129 421 KVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSD----------RILVMREGRIV 480 (500)
T ss_pred CEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCC----------EEEEEECCEEE
Confidence 99999999999765 667777777666 88888887 55555554 47788766443
|
|
| >PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=114.98 Aligned_cols=148 Identities=25% Similarity=0.274 Sum_probs=101.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCc------------------cccceeeeeeEEEE--ECCeeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAAS------------------YEFTTLTCIPGIIH--YNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~------------------~p~tT~~~~~G~i~--~~g~~i~~~d~~g~~~~ 122 (317)
..|+++|+.|+|||||+.+|++....+.+ ..+.|.+.....+. .++..+.++|+||..+
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~~- 82 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHED- 82 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSHH-
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeecccccccc-
Confidence 47999999999999999999976543221 23556666666777 7789999999999632
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 201 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~ 201 (317)
+.......+..+|.+++++|+...... .......+..
T Consensus 83 ------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~------------------------------------ 120 (188)
T PF00009_consen 83 ------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRE------------------------------------ 120 (188)
T ss_dssp ------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHH------------------------------------
T ss_pred ------eeecccceecccccceeeeecccccccccccccccccc------------------------------------
Confidence 223455567889999999998654221 1111111111
Q ss_pred HHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHh-------c-----CCCeE
Q 021103 202 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA-------R-----QPNSV 266 (317)
Q Consensus 202 ~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~-------~-----~~~~v 266 (317)
...|.++|+||+|+...+ ..+.+. . ..+++
T Consensus 121 -----------------------------------~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi 165 (188)
T PF00009_consen 121 -----------------------------------LGIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVI 165 (188)
T ss_dssp -----------------------------------TT-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEE
T ss_pred -----------------------------------cccceEEeeeeccchhhhHHHHHHHHHHHhccccccCccccceEE
Confidence 146899999999998322 111111 1 23589
Q ss_pred EEeccccccHHHHHHHHHHHhC
Q 021103 267 VISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 267 ~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
++||.+|+|++.|++.|.+.++
T Consensus 166 ~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 166 PISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEecCCCCCHHHHHHHHHHhCc
Confidence 9999999999999999998875
|
The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C .... |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.2e-13 Score=116.82 Aligned_cols=88 Identities=17% Similarity=0.319 Sum_probs=65.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCc--cccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH----HHhhh
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAAS--YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ----VIAVS 137 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~--~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~----~~~~~ 137 (317)
+|+|+|++|||||||+|+|+|.....+. .+++|+++..+...++|..+.++||||+.+........... .....
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~ 81 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSA 81 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHhcC
Confidence 6899999999999999999998754333 56899999989888999999999999997643211111111 11123
Q ss_pred ccCcEEEEEecCCC
Q 021103 138 KSSDIVLMVLDASK 151 (317)
Q Consensus 138 ~~~d~i~~v~~~~~ 151 (317)
+..++++++++...
T Consensus 82 ~g~~~illVi~~~~ 95 (196)
T cd01852 82 PGPHAFLLVVPLGR 95 (196)
T ss_pred CCCEEEEEEEECCC
Confidence 45788888887654
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd04157 Arl6 Arl6 subfamily | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-13 Score=111.38 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=53.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+|+++|++|||||||++.+++.......+. .|.......+...+..+.++|+||..... ......+..+|.+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~-~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d~i 72 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV-PTVGFNVESFEKGNLSFTAFDMSGQGKYR-------GLWEHYYKNIQGI 72 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec-CccccceEEEEECCEEEEEEECCCCHhhH-------HHHHHHHccCCEE
Confidence 478999999999999999998642222221 12222223345567788999999964211 1112345789999
Q ss_pred EEEecCCCc
Q 021103 144 LMVLDASKS 152 (317)
Q Consensus 144 ~~v~~~~~~ 152 (317)
++++|....
T Consensus 73 i~v~D~~~~ 81 (162)
T cd04157 73 IFVIDSSDR 81 (162)
T ss_pred EEEEeCCcH
Confidence 999998654
|
Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A |
| >PRK09866 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.5e-13 Score=129.14 Aligned_cols=55 Identities=24% Similarity=0.303 Sum_probs=42.0
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCCCCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC-CCCcccccee
Q 021103 29 QLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTL 97 (317)
Q Consensus 29 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~ 97 (317)
.++.++..+++++.+....+ ..++|+|++|+|||||+|+|+|... |+++.|+||.
T Consensus 50 ~i~~ri~~L~~~L~Kv~~~~--------------~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 50 NIAERHAMLNNELRKISRLE--------------MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred HHHHHHHHHHHHHHHHhccc--------------eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 45566666666655544322 5899999999999999999999875 5668899888
|
|
| >cd04151 Arl1 Arl1 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-13 Score=110.73 Aligned_cols=147 Identities=21% Similarity=0.235 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|++|+|||||++.+...... .. ..|.......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~~~i 70 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGQTSIR-------PYWRCYYSNTDAI 70 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc-Cc--CCccCcCeEEEEECCEEEEEEECCCCHHHH-------HHHHHHhcCCCEE
Confidence 4899999999999999999754422 21 224444445566677889999999964211 1123346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|....... ....+.+. .+++.
T Consensus 71 i~v~d~~~~~~~-~~~~~~~~----------------------------------------~~~~~-------------- 95 (158)
T cd04151 71 IYVVDSTDRDRL-GTAKEELH----------------------------------------AMLEE-------------- 95 (158)
T ss_pred EEEEECCCHHHH-HHHHHHHH----------------------------------------HHHhc--------------
Confidence 999997653211 11111110 00000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCCh---hhHH-HHhc-C-----CCeEEEeccccccHHHHHHHHHH
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVD-KLAR-Q-----PNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~-~l~~-~-----~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. .....|+++|+||+|+... .++. .+.. . ..++++||+++.|++++.+.+.+
T Consensus 96 --------~--~~~~~piiiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 96 --------E--ELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred --------h--hhcCCcEEEEEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence 0 0014799999999998743 2222 1211 1 23899999999999999998864
|
Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. |
| >cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2) | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.3e-13 Score=115.73 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=37.4
Q ss_pred eeeeEEEecccCCChhhH----HHH---h-c----CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDV----DKL---A-R----QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~----~~l---~-~----~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|+++|+||+|+...... +.+ . . ...++++||++|.|+++|.+.|.+.++
T Consensus 138 ~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 138 KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence 478899999999864332 122 1 1 245899999999999999999987653
|
eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel |
| >cd01862 Rab7 Rab7 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-12 Score=109.43 Aligned_cols=155 Identities=15% Similarity=0.191 Sum_probs=94.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||+|++.+........+..+.+.....+.+.+.. +.++|+||..... ......++.+|
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~-------~~~~~~~~~~d 74 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ-------SLGVAFYRGAD 74 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHH-------hHHHHHhcCCC
Confidence 68999999999999999998775432222222334444456676654 4578999852211 11223567899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|....... ..+..+... ++....
T Consensus 75 ~~i~v~d~~~~~~~-~~~~~~~~~----------------------------------------~~~~~~---------- 103 (172)
T cd01862 75 CCVLVYDVTNPKSF-ESLDSWRDE----------------------------------------FLIQAS---------- 103 (172)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcC----------
Confidence 99999987654221 111111111 111000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+..+ +....+.+ ...++.+||.+|.|++++.+.|.+.+
T Consensus 104 -----------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~ 166 (172)
T cd01862 104 -----------PSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA 166 (172)
T ss_pred -----------ccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 001125799999999999732 22332222 24688999999999999999998754
|
Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C- |
| >cd04166 CysN_ATPS CysN_ATPS subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.8e-13 Score=118.55 Aligned_cols=82 Identities=22% Similarity=0.234 Sum_probs=63.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCC-------------------------------ccccceeeeeeEEEEECCeeEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKIQ 112 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~-------------------------------~~p~tT~~~~~G~i~~~g~~i~ 112 (317)
+++|+|.+|+|||||+++|++....+. ..+++|+++..+.+.+++.++.
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 489999999999999999986543322 1278899999998889999999
Q ss_pred EecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 113 LLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 113 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
++||||.... .......+..+|.+++++|+...
T Consensus 81 liDTpG~~~~-------~~~~~~~~~~ad~~llVvD~~~~ 113 (208)
T cd04166 81 IADTPGHEQY-------TRNMVTGASTADLAILLVDARKG 113 (208)
T ss_pred EEECCcHHHH-------HHHHHHhhhhCCEEEEEEECCCC
Confidence 9999996321 12334456789999999998643
|
CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN. |
| >cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=108.99 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|+|||||++.+.+........|..+.+.....+.++|. .+.++|+||.... .......++.+|
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~~~~~~ 76 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERF-------RTITSSYYRGAH 76 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHhCcCC
Confidence 6899999999999999999976544444454455555566777765 4678999984321 111223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..+... ...+..++..+ .
T Consensus 77 ~ii~v~d~~~~~s-~~~l~~~~~~~--------------------------------------------~---------- 101 (166)
T cd01869 77 GIIIVYDVTDQES-FNNVKQWLQEI--------------------------------------------D---------- 101 (166)
T ss_pred EEEEEEECcCHHH-HHhHHHHHHHH--------------------------------------------H----------
Confidence 9999999765321 12222222211 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|.++|.||+|+.... +...+.. ..+.+.+||+++.|++++.+.|.+.+
T Consensus 102 ---------~~~--~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 163 (166)
T cd01869 102 ---------RYA--SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI 163 (166)
T ss_pred ---------HhC--CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence 000 1247899999999986432 2222222 23578899999999999999998765
|
Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t |
| >smart00175 RAB Rab subfamily of small GTPases | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=108.33 Aligned_cols=151 Identities=19% Similarity=0.192 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|++|||||||++.+++........+..+.+...-.+.+++. .+.++|+||..... ......+..+|
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~d 74 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFR-------SITSSYYRGAV 74 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhCCCC
Confidence 6899999999999999999987655455555555555556777774 57789999842211 12233457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...+... +.+..++..+ ..
T Consensus 75 ~~ilv~d~~~~~s~-~~~~~~l~~~--------------------------------------------~~--------- 100 (164)
T smart00175 75 GALLVYDITNRESF-ENLKNWLKEL--------------------------------------------RE--------- 100 (164)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999987654321 1222222111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... ....+.+ ....+.+||.++.|++++.+.|.+.+
T Consensus 101 ---------~---~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~ 161 (164)
T smart00175 101 ---------Y---ADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI 161 (164)
T ss_pred ---------h---CCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 01247999999999987522 2222221 24588999999999999999998765
|
Rab GTPases are implicated in vesicle trafficking. |
| >cd04112 Rab26 Rab26 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.7e-13 Score=112.28 Aligned_cols=155 Identities=19% Similarity=0.217 Sum_probs=99.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeE-EEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-IIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G-~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++|+|++|||||||++.+.+.......++.|+.....+ .+.+++. .+.++||||-... .......+..+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~a 74 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERF-------RSVTHAYYRDA 74 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHH-------HHhhHHHccCC
Confidence 689999999999999999988765555555554433333 4667665 4667899983211 01122346779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 75 d~~i~v~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 100 (191)
T cd04112 75 HALLLLYDITNKAS-FDNIRAWLTE--------------------------------------------IK--------- 100 (191)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765321 1122222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCeeE
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVR 291 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~ 291 (317)
. . .....|+++|.||+|+... ++...+.. ..+.+.+||.+|.|++++.+.|.+.+...+
T Consensus 101 ---------~-~--~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~ 166 (191)
T cd04112 101 ---------E-Y--AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK 166 (191)
T ss_pred ---------H-h--CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence 0 0 0124799999999999632 23333332 235789999999999999999988775443
|
First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. |
| >cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.1e-12 Score=108.46 Aligned_cols=152 Identities=19% Similarity=0.199 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|+|||||++.+.+.. .+..++.|+.+.....+.++|. .+.++||||..... .-....++.+
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 74 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-FVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFS-------AMREQYMRTG 74 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchh-------HHHHHHHhhC
Confidence 479999999999999999998754 3566777766655556667775 46779999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... .+.+..++.. +.+.
T Consensus 75 ~~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 102 (164)
T cd04145 75 EGFLLVFSVTDRGS-FEEVDKFHTQ----------------------------------------ILRV----------- 102 (164)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
Confidence 99999988765321 1122211111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||+++.|++++.+.+.+.+
T Consensus 103 ------------~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 103 ------------K-DRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred ------------h-CCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence 0 01247999999999986432 2222221 23678999999999999999987654
|
This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali |
| >cd04158 ARD1 ARD1 subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.3e-13 Score=110.72 Aligned_cols=149 Identities=19% Similarity=0.206 Sum_probs=95.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|||||||++.+.+... .+ +.+|+......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~--~~-~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~-------~~~~~~~~~ad~i 70 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF--MQ-PIPTIGFNVETVEYKNLKFTIWDVGGKHKLR-------PLWKHYYLNTQAV 70 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC--CC-cCCcCceeEEEEEECCEEEEEEECCCChhcc-------hHHHHHhccCCEE
Confidence 478999999999999999998632 12 3455555556677788889999999963211 1222346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|......- ..+..++..+ ++.
T Consensus 71 i~V~D~s~~~s~-~~~~~~~~~~----------------------------------------~~~-------------- 95 (169)
T cd04158 71 VFVVDSSHRDRV-SEAHSELAKL----------------------------------------LTE-------------- 95 (169)
T ss_pred EEEEeCCcHHHH-HHHHHHHHHH----------------------------------------hcC--------------
Confidence 999997653211 1111111110 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-----C---CeEEEeccccccHHHHHHHHHHHh
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-----P---NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-----~---~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||.|+... ++....... . .++.+||++|.|++++.+.|.+.+
T Consensus 96 ----------~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~ 160 (169)
T cd04158 96 ----------KELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQL 160 (169)
T ss_pred ----------hhhCCCCEEEEEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHH
Confidence 00113699999999998632 333322221 1 245679999999999999998765
|
ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra |
| >PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.2e-13 Score=108.43 Aligned_cols=134 Identities=23% Similarity=0.276 Sum_probs=88.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.++.|||+.|||||||+++|.|...... .++ .+.+.+ ..+||||-+-. ...+.........++|+
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~~--------KTq-~i~~~~---~~IDTPGEyiE---~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRYK--------KTQ-AIEYYD---NTIDTPGEYIE---NPRFYHALIVTAQDADV 66 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCcC--------ccc-eeEecc---cEEECChhhee---CHHHHHHHHHHHhhCCE
Confidence 3799999999999999999999864311 012 234433 24899984321 22233445556678999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
++++.|+..+.. .+++.++.
T Consensus 67 V~ll~dat~~~~-----------------~~pP~fa~------------------------------------------- 86 (143)
T PF10662_consen 67 VLLLQDATEPRS-----------------VFPPGFAS------------------------------------------- 86 (143)
T ss_pred EEEEecCCCCCc-----------------cCCchhhc-------------------------------------------
Confidence 999998865321 11111110
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCC-ChhhHHHH------hcCCCeEEEeccccccHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVDKL------ARQPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~~l------~~~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
...+|+|-|++|+|+. +.+.++.. ....+++.+|+.+++|+++|.+.|.
T Consensus 87 -------------~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 87 -------------MFNKPVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred -------------ccCCCEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 1147999999999999 34444322 1235689999999999999999875
|
Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.9e-15 Score=136.38 Aligned_cols=174 Identities=17% Similarity=0.170 Sum_probs=109.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++....|.++|++|++|+||||+++.|...+.+ .+|.|.++|+++..+.... .+.
T Consensus 280 ~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~-----------~sG~I~id~qdir~vtq~s-----------lR~ 337 (497)
T COG5265 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDV-----------NSGSITIDGQDIRDVTQQS-----------LRR 337 (497)
T ss_pred cCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCC-----------cCceEEEcchhHHHhHHHH-----------HHH
Confidence 567788888999999999999999999999999877 8999999998764321100 011
Q ss_pred HHhhhccCcEEEEE------ecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE-----
Q 021103 133 VIAVSKSSDIVLMV------LDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS----- 188 (317)
Q Consensus 133 ~~~~~~~~d~i~~v------~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia----- 188 (317)
.....+ -|.+++- .....+....+.+....+.+.+ ....+--.||||||||+++|
T Consensus 338 aIg~VP-QDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk 416 (497)
T COG5265 338 AIGIVP-QDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILK 416 (497)
T ss_pred HhCcCc-ccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhc
Confidence 111111 1112111 0001111111122222222211 34445568999999999999
Q ss_pred ----eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 ----FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 ----lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||.||.||..+-+++...+. ...|.+++.|...- .....-|+|+...-++..+.-+++
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlst----------i~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLST----------IIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhh----------ccCCceEEEeeCCEEEecCcHHHH
Confidence 89999999999887666655554 45588889897321 113566888877777655544444
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.3e-14 Score=145.93 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=103.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE---EecCCCccccccCCch-
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ---LLDLPGIIEGASEGKG- 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~---~~d~~g~~~~~~~~~~- 128 (317)
.+++=-..+|...||+|.+|||||||||.|+|...- -.++|.|.++|.+.. +-...|+.++......
T Consensus 808 ~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~---------G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 808 NNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTG---------GYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred hcCceEecCCceeehhcCCCCchHHHHHHHhcCccc---------ceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 455556678999999999999999999999998632 238999999998754 2222344332111100
Q ss_pred -hHHHH---HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc----ccccceeeeeeE----------
Q 021103 129 -RGRQV---IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ----IYFKKKKTGGIS---------- 188 (317)
Q Consensus 129 -~~~~~---~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~----LS~g~~qr~~ia---------- 188 (317)
-+++. ...++.. -+ ....+..+.+++.++.+++ ..+.-++. ||..||+|+.|+
T Consensus 879 ~TVrESL~fSA~LRlp------~~-v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~i 951 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLP------KE-VSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSI 951 (1391)
T ss_pred cchHHHHHHHHHHcCC------Cc-CCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCcee
Confidence 00110 0111100 00 0122233678888888888 35555555 999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
|+|||||||||..+...+++.++ ..| +++..=|-+..+
T Consensus 952 lFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 952 LFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSID 993 (1391)
T ss_pred EEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHH
Confidence 89999999999998666655554 444 888888986543
|
|
| >cd01864 Rab19 Rab19 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=107.47 Aligned_cols=151 Identities=15% Similarity=0.131 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+.+........+..+.+...-.+.+++. .+.++|+||-... .......++.+
T Consensus 4 ~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~~~~ 76 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERF-------RTITQSYYRSA 76 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHhccC
Confidence 47999999999999999999764422111122223333445667774 5678899984211 11123345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... .+.+..++..+ ..
T Consensus 77 d~~llv~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~-------- 103 (165)
T cd01864 77 NGAIIAYDITRRSS-FESVPHWIEEV--------------------------------------------EK-------- 103 (165)
T ss_pred CEEEEEEECcCHHH-HHhHHHHHHHH--------------------------------------------HH--------
Confidence 99999998865422 11222222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc---CCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||++|.|++++.+.+.+.
T Consensus 104 -----------~--~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 104 -----------Y--GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATE 164 (165)
T ss_pred -----------h--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHh
Confidence 0 01247899999999997432 2222222 2357899999999999999988764
|
Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=107.10 Aligned_cols=151 Identities=18% Similarity=0.189 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|+|||||+|.+++... ...++.|+.+.....+.+++.. +.++||+|..... ......+..++
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~~~ 74 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTGE 74 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-cCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchH-------HHHHHHHhcCC
Confidence 689999999999999999997642 3455556555555566777754 5679999843210 11123456788
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...... ...+..++.. +.+.
T Consensus 75 ~~i~v~~~~~~~s-~~~~~~~~~~----------------------------------------i~~~------------ 101 (162)
T cd04138 75 GFLCVFAINSRKS-FEDIHTYREQ----------------------------------------IKRV------------ 101 (162)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh------------
Confidence 8888887654321 1111111111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... +...+.+ ....+.+||++|.|++++.+.+.+.+
T Consensus 102 -----------~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (162)
T cd04138 102 -----------K-DSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161 (162)
T ss_pred -----------c-CCCCCCEEEEEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence 0 01247999999999997532 2222222 23578999999999999999987643
|
H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. |
| >cd04144 Ras2 Ras2 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.4e-12 Score=111.27 Aligned_cols=162 Identities=17% Similarity=0.155 Sum_probs=99.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|+|||||++.+++... ...++.|+.+...-.+.++|.. +.++||+|..... ......++.+|
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 72 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHF-VETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT-------ALRDQWIREGE 72 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHHHhCC
Confidence 478999999999999999985432 3446666655544556677765 6789999852211 11123457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+...... .+.+..++..+ ....
T Consensus 73 ~~ilv~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~~~---------- 100 (190)
T cd04144 73 GFILVYSITSRST-FERVERFREQI-----------------------------------------QRVK---------- 100 (190)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------HHHh----------
Confidence 9999998754321 12222222111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCeeEEEe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~ 294 (317)
.......|+++|.||+|+.... ....+.+ ....+.+||+++.|++++.+.+.+.+..-+--+
T Consensus 101 -----------~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 101 -----------DESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred -----------cccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHHhhccc
Confidence 0001247999999999996421 2222222 135789999999999999999988764433333
Q ss_pred cC
Q 021103 295 KP 296 (317)
Q Consensus 295 ~~ 296 (317)
.+
T Consensus 170 ~~ 171 (190)
T cd04144 170 QG 171 (190)
T ss_pred CC
Confidence 33
|
The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. |
| >cd04154 Arl2 Arl2 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-13 Score=111.26 Aligned_cols=148 Identities=20% Similarity=0.216 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+. .|.......+.+++..+.++|+||..... ......+..+|.
T Consensus 15 ~kv~ivG~~~~GKTsL~~~l~~~~~~--~~~-~t~g~~~~~~~~~~~~l~l~D~~G~~~~~-------~~~~~~~~~~d~ 84 (173)
T cd04154 15 MRILILGLDNAGKTTILKKLLGEDID--TIS-PTLGFQIKTLEYEGYKLNIWDVGGQKTLR-------PYWRNYFESTDA 84 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC--CcC-CccccceEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCCCE
Confidence 47999999999999999999987432 111 12222334566778888999999853210 112234678999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|....... ..+...+.. ++..
T Consensus 85 ~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------- 110 (173)
T cd04154 85 LIWVVDSSDRLRL-DDCKRELKE----------------------------------------LLQE------------- 110 (173)
T ss_pred EEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC-------------
Confidence 9999997654211 111111111 0000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhc-------CCCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLAR-------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
......|+++|.||+|+... ++...... ...++.+||++|.|++++.+.+.+
T Consensus 111 -----------~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 111 -----------ERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred -----------hhhcCCCEEEEEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence 00124799999999999743 23332221 225888999999999999988753
|
Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis. |
| >cd04109 Rab28 Rab28 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=112.33 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=98.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++|+|++|||||||++.+++........|..+.+...-.+.+++ ..+.++|++|..... ......++.+
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~-------~l~~~~~~~a 74 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG-------KMLDKYIYGA 74 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHH-------HHHHHHhhcC
Confidence 689999999999999999997654433345555666666677754 467889999842110 1112245789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|..+.... +.+..++..+ ...
T Consensus 75 d~iilV~D~t~~~s~-~~~~~w~~~l-----------------------------------------~~~---------- 102 (215)
T cd04109 75 HAVFLVYDVTNSQSF-ENLEDWYSMV-----------------------------------------RKV---------- 102 (215)
T ss_pred CEEEEEEECCCHHHH-HHHHHHHHHH-----------------------------------------HHh----------
Confidence 999999998654321 1222221111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
........|+++|.||+|+... +....+.+. ...+.+||++|.|++++.+.+.+.+..
T Consensus 103 -----------~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 103 -----------LKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred -----------ccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 0000123578999999999742 122233222 347889999999999999999877644
|
First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs |
| >cd00154 Rab Rab family | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.8e-12 Score=105.77 Aligned_cols=148 Identities=20% Similarity=0.225 Sum_probs=95.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||+|.+.+...+....+.++.+.....+.+.+ ..+.++|+||..... ......+..+|
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFR-------SITPSYYRGAH 74 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHH-------HHHHHHhcCCC
Confidence 689999999999999999998876544444444444444555544 557788999863211 12234567799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...... ...+..++..+ .
T Consensus 75 ~ii~v~d~~~~~~-~~~~~~~~~~~--------------------------------------------~---------- 99 (159)
T cd00154 75 GAILVYDITNRES-FENLDKWLKEL--------------------------------------------K---------- 99 (159)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----------
Confidence 9999998765321 12222222111 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
+. .....|.++|+||+|+... ++...+.. ....+.+||.++.|++++.+.|.
T Consensus 100 --------~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 100 --------EY---APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA 158 (159)
T ss_pred --------Hh---CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence 00 0024799999999999622 22333322 35688999999999999998875
|
Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di |
| >cd04153 Arl5_Arl8 Arl5/Arl8 subfamily | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-13 Score=110.92 Aligned_cols=80 Identities=19% Similarity=0.248 Sum_probs=56.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|+|||||++.+++.... . ...|.....+.+.+++..+.++|+||.... .......++.+|.
T Consensus 16 ~kv~~~G~~~~GKTsl~~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~-------~~~~~~~~~~~d~ 85 (174)
T cd04153 16 YKVIIVGLDNAGKTTILYQFLLGEVV-H--TSPTIGSNVEEIVYKNIRFLMWDIGGQESL-------RSSWNTYYTNTDA 85 (174)
T ss_pred cEEEEECCCCCCHHHHHHHHccCCCC-C--cCCccccceEEEEECCeEEEEEECCCCHHH-------HHHHHHHhhcCCE
Confidence 57999999999999999999764432 1 123444455677788888999999996321 0112234678999
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
+++++|....
T Consensus 86 vi~V~D~s~~ 95 (174)
T cd04153 86 VILVIDSTDR 95 (174)
T ss_pred EEEEEECCCH
Confidence 9999997653
|
Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. |
| >cd00876 Ras Ras family | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-12 Score=107.32 Aligned_cols=150 Identities=19% Similarity=0.194 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++++++.. ....++.+|.+.....+.+++ ..+.++|+||.... .......+..+|
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~-------~~~~~~~~~~~~ 72 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT-FVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEF-------SAMRDLYIRQGD 72 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-CCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHH-------HHHHHHHHhcCC
Confidence 48999999999999999999776 456677777777777788875 35778999985331 112223456789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++....... ..+..+... +...
T Consensus 73 ~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 99 (160)
T cd00876 73 GFILVYSITDRESF-EEIKGYREQ----------------------------------------ILRV------------ 99 (160)
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHh------------
Confidence 99999887543221 111111110 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHH-hcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKL-ARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l-~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+... ++...+ ... .+.+.+||.++.|++++.+.|.+.
T Consensus 100 -----------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 100 -----------K-DDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred -----------c-CCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence 0 0125799999999998752 122222 222 468999999999999999988764
|
The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m |
| >cd01866 Rab2 Rab2 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-12 Score=106.78 Aligned_cols=152 Identities=20% Similarity=0.169 Sum_probs=97.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|||||||++.+++...+....|..+.+.....+.+++. .+.++|++|-.. ........++.+
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~~~~~~~~~ 77 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQES-------FRSITRSYYRGA 77 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHH-------HHHHHHHHhccC
Confidence 37999999999999999999987654333344445555556667664 567899998421 011123355789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..++.. +..
T Consensus 78 d~il~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~~-------- 104 (168)
T cd01866 78 AGALLVYDITRRET-FNHLTSWLED--------------------------------------------ARQ-------- 104 (168)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999764321 1222222211 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ...+.|+++|.||+|+... ++...+.. ....+.+||.++.|++++.+.+.+.+
T Consensus 105 ----------~---~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~ 165 (168)
T cd01866 105 ----------H---SNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI 165 (168)
T ss_pred ----------h---CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0125799999999998732 22222221 24578899999999999998887654
|
Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur |
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=107.14 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++...+....|..+.+...-.+.++|. .+.++||+|..... ......++.+|
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~d 74 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL-------EVRNEFYKDTQ 74 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHH-------HHHHHHhccCC
Confidence 6899999999999999999987654333333333333335566554 56789999853211 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+.. ...+..++..+ .+.... |
T Consensus 75 ~~ilv~D~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~~--------~ 105 (168)
T cd04119 75 GVLLVYDVTDRQS-FEALDSWLKEM----------------------------------------KQEGGP--------H 105 (168)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHH----------------------------------------HHhccc--------c
Confidence 9999998765422 11222222211 000000 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+... ++...... ....+.+||+++.|++++.+.|.+.+
T Consensus 106 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 106 ------------GNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred ------------ccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00124799999999999732 22222221 23578999999999999999987654
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2 | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=107.54 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|++|+|||||++.+++........|..+.+.....+.++|. .+.++|+||..... ......+..+
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~-------~~~~~~~~~a 76 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR-------TITTAYYRGA 76 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHH-------HHHHHHhCCC
Confidence 47999999999999999999977543222333333334445667775 46788999842211 1122356789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..+.. ....+..++..+ .
T Consensus 77 d~~i~v~d~~~~~-s~~~~~~~~~~i--------------------------------------------~--------- 102 (167)
T cd01867 77 MGIILVYDITDEK-SFENIRNWMRNI--------------------------------------------E--------- 102 (167)
T ss_pred CEEEEEEECcCHH-HHHhHHHHHHHH--------------------------------------------H---------
Confidence 9999999875432 122222222111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... ....+.+ ..+.+.+||.++.|++++.+.+.+.+
T Consensus 103 ----------~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~ 164 (167)
T cd01867 103 ----------EH--ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI 164 (167)
T ss_pred ----------Hh--CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997421 2222221 23578999999999999999988765
|
Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi |
| >cd01863 Rab18 Rab18 subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.1e-12 Score=106.55 Aligned_cols=151 Identities=19% Similarity=0.199 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|-.+.+.....+.+++ ..+.++|+||..... ......++.+|
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~-------~~~~~~~~~~d 74 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFR-------TLTSSYYRGAQ 74 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhh-------hhhHHHhCCCC
Confidence 689999999999999999998764332223222233333455555 356788999853211 11123457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|...... .+.+..++..+ ..+
T Consensus 75 ~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~~----------- 101 (161)
T cd01863 75 GVILVYDVTRRDT-FTNLETWLNEL-----------------------------------------ETY----------- 101 (161)
T ss_pred EEEEEEECCCHHH-HHhHHHHHHHH-----------------------------------------HHh-----------
Confidence 9999998764322 11222222110 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+... ++...+.. ....+.+||.+|.|++++.+.+.+.
T Consensus 102 -----------~-~~~~~~~~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~ 160 (161)
T cd01863 102 -----------S-TNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEK 160 (161)
T ss_pred -----------C-CCCCCcEEEEEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHh
Confidence 0 0125789999999999732 22222222 2358899999999999999988764
|
Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos |
| >cd01890 LepA LepA subfamily | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=109.35 Aligned_cols=147 Identities=20% Similarity=0.305 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC---------------CccccceeeeeeEEEEE---C--CeeEEEecCCCccccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA---------------ASYEFTTLTCIPGIIHY---N--DTKIQLLDLPGIIEGA 123 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v---------------~~~p~tT~~~~~G~i~~---~--g~~i~~~d~~g~~~~~ 123 (317)
.|+++|.+|+|||||++.+++....+ ....++|..+..-.+.+ + +..+.++||||..+..
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 58999999999999999998743111 11234555554434444 2 3457799999974321
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHH
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLC 203 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~ 203 (317)
......+..+|.+++++|........ ....+
T Consensus 82 -------~~~~~~~~~ad~~i~v~D~~~~~~~~-~~~~~----------------------------------------- 112 (179)
T cd01890 82 -------YEVSRSLAACEGALLLVDATQGVEAQ-TLANF----------------------------------------- 112 (179)
T ss_pred -------HHHHHHHHhcCeEEEEEECCCCccHh-hHHHH-----------------------------------------
Confidence 12233457799999999976432111 00000
Q ss_pred HHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHHHh---cC--CCeEEEecccccc
Q 021103 204 YQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA---RQ--PNSVVISCNLKLN 275 (317)
Q Consensus 204 ~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~l~---~~--~~~v~iSa~~~~~ 275 (317)
.. .. ....|+++|+||+|+..... .+.+. .. ...+.+||.+|.|
T Consensus 113 ~~----------------------~~------~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 164 (179)
T cd01890 113 YL----------------------AL------ENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLG 164 (179)
T ss_pred HH----------------------HH------HcCCCEEEEEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCC
Confidence 00 00 01468999999999864211 12222 22 2478999999999
Q ss_pred HHHHHHHHHHHh
Q 021103 276 LDRLLARMWEEM 287 (317)
Q Consensus 276 i~~l~~~i~~~l 287 (317)
+++|.+.+.+.+
T Consensus 165 i~~l~~~l~~~~ 176 (179)
T cd01890 165 VEDLLEAIVERI 176 (179)
T ss_pred HHHHHHHHHhhC
Confidence 999999998764
|
LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype. |
| >cd01865 Rab3 Rab3 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=106.51 Aligned_cols=151 Identities=19% Similarity=0.190 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++........|.++.+...-.+..++. .+.++|++|..... ......++.++
T Consensus 3 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~-------~~~~~~~~~~~ 75 (165)
T cd01865 3 KLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR-------TITTAYYRGAM 75 (165)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHccCCc
Confidence 6899999999999999999986532221222221222223444553 57789999853211 11233467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|...... .+.+.+++..+ .
T Consensus 76 ~~l~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~---------- 100 (165)
T cd01865 76 GFILMYDITNEES-FNAVQDWSTQI--------------------------------------------K---------- 100 (165)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----------
Confidence 9999998764321 12222222211 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... ....+... ...+.+||+++.|++++.+.+.+.+
T Consensus 101 ---------~~--~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 162 (165)
T cd01865 101 ---------TY--SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII 162 (165)
T ss_pred ---------Hh--CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 01247899999999996432 22222221 2588899999999999999998764
|
The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot |
| >cd04114 Rab30 Rab30 subfamily | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.1e-12 Score=107.50 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+++........+..+.+.....+.++|.. +.++|++|.... .......+..+
T Consensus 8 ~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~-------~~~~~~~~~~~ 80 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERF-------RSITQSYYRSA 80 (169)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHhcCC
Confidence 579999999999999999998654433334445556666677888855 567899985321 11223456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ +.
T Consensus 81 d~~i~v~d~~~~~s-~~~~~~~~~~l-----------------------------------------~~----------- 107 (169)
T cd04114 81 NALILTYDITCEES-FRCLPEWLREI-----------------------------------------EQ----------- 107 (169)
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999998754321 11122221110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. ....|+++|.||+|+..... ...+.+ ....+.+||+++.|++++.+.|.+.
T Consensus 108 -----------~~--~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 108 -----------YA--NNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred -----------hC--CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 00 11478899999999874321 122222 2457899999999999999998764
|
Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. |
| >cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.2e-12 Score=106.22 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|||||||++.+++.... . ...|.......+.+.+..+.++|+||..... ......+..+|.+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~~ 70 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV--T-TIPTIGFNVETVEYKNVSFTVWDVGGQDKIR-------PLWKHYYENTNGI 70 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC--C-CCCCcCcceEEEEECCEEEEEEECCCChhhH-------HHHHHHhccCCEE
Confidence 4899999999999999999988622 1 1223333344566778889999999954311 1122345778999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|...+..- ..+...+.. ++.
T Consensus 71 i~v~D~~~~~~~-~~~~~~~~~----------------------------------------~~~--------------- 94 (158)
T cd00878 71 IFVVDSSDRERI-EEAKEELHK----------------------------------------LLN--------------- 94 (158)
T ss_pred EEEEECCCHHHH-HHHHHHHHH----------------------------------------HHh---------------
Confidence 999998754211 111111111 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHH
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.. .....|+++|.||+|+.... +...... ...++.+||++|.|++++.+.|..
T Consensus 95 -------~~--~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~ 157 (158)
T cd00878 95 -------EE--ELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ 157 (158)
T ss_pred -------Cc--ccCCCcEEEEeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence 00 01257999999999998533 2222111 124788999999999999988754
|
Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-13 Score=118.56 Aligned_cols=69 Identities=4% Similarity=-0.208 Sum_probs=50.6
Q ss_pred HHHHHHHHHccccccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc----c--cC-cE
Q 021103 157 QILTKELEAVGLRLNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK----I--HN-AE 216 (317)
Q Consensus 157 ~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~----~--~~-~~ 216 (317)
..+.++|+. .-..++++.+||+||+||+.++ +++||||++||......+.+.+. . .+ ++
T Consensus 91 ~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~i 169 (198)
T cd03276 91 DMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFI 169 (198)
T ss_pred HHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEE
Confidence 456666665 3356788999999999998764 89999999999987655544332 2 22 78
Q ss_pred EEecCCCChh
Q 021103 217 VLFREDATVD 226 (317)
Q Consensus 217 i~~shd~~~~ 226 (317)
++++|+.+..
T Consensus 170 ii~th~~~~i 179 (198)
T cd03276 170 FITPQDISGL 179 (198)
T ss_pred EEECCccccc
Confidence 8999996543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=105.62 Aligned_cols=149 Identities=19% Similarity=0.176 Sum_probs=89.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++++|.+|||||||++.+.+..... .+..| ..+...-.+.+++. .+.++||+|..... ......+..+
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEP-QQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ-------TMHASYYHKA 73 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCC-CcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhCCC
Confidence 68999999999999999887654321 11111 11112223445554 46789999853211 1122346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 74 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 99 (161)
T cd04124 74 HACILVFDVTRKIT-YKNLSKWYEE--------------------------------------------LR--------- 99 (161)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765322 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+..... ...+.. ..+.+.+||+++.|++++.+.+.+..
T Consensus 100 -------------~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 157 (161)
T cd04124 100 -------------EYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA 157 (161)
T ss_pred -------------HhCCCCcEEEEEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0012479999999999853221 111211 24578999999999999999998754
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >cd01892 Miro2 Miro2 subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-12 Score=106.80 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeee-eeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTC-IPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~-~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
..+++++|.+|+|||||++.+.+....+.+|..|+... ....+.++|.. +.+.|++|-..... .....+.
T Consensus 4 ~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~ 76 (169)
T cd01892 4 VFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAIL-------LNDAELA 76 (169)
T ss_pred EEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccc-------cchhhhh
Confidence 35799999999999999999988654335566655433 22456677744 55678776422110 1112347
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|..++.. .+.+.++++. +
T Consensus 77 ~~d~~llv~d~~~~~s-~~~~~~~~~~--------------------------------------------~-------- 103 (169)
T cd01892 77 ACDVACLVYDSSDPKS-FSYCAEVYKK--------------------------------------------Y-------- 103 (169)
T ss_pred cCCEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------h--------
Confidence 8999999998765421 1111111111 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+.... ..+.+.+ ....+.+||.++.|++++.+.+.+.+
T Consensus 104 --------------~-~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 165 (169)
T cd01892 104 --------------F-MLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA 165 (169)
T ss_pred --------------c-cCCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence 0 01147999999999986432 1223322 23458999999999999999998765
|
Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. |
| >cd04136 Rap_like Rap-like subfamily | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.3e-12 Score=105.48 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||++.+.+... +..++.|+.+.....+.+++.. +.++||||..... .-....++.+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 73 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT-------AMRDLYIKNG 73 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCCchhhhEEEEEEECCEEEEEEEEECCCccccc-------hHHHHHhhcC
Confidence 3799999999999999999886542 3456666665556667777754 5678999953211 0111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... .+.+..++..+ ..
T Consensus 74 ~~~ilv~d~~~~~s-~~~~~~~~~~i----------------------------------------~~------------ 100 (163)
T cd04136 74 QGFVLVYSITSQSS-FNDLQDLREQI----------------------------------------LR------------ 100 (163)
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH------------
Confidence 99999888754322 11121111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc-C-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~-~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+.+ + .+.+.+||+++.|++++.+.+.+.+
T Consensus 101 -----------~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~ 162 (163)
T cd04136 101 -----------VK-DTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred -----------hc-CCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence 00 01247999999999986432 1222222 1 4578899999999999999987653
|
The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. |
| >cd04139 RalA_RalB RalA/RalB subfamily | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.3e-12 Score=104.69 Aligned_cols=151 Identities=21% Similarity=0.224 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|++|||||||++.+++... +.++.+|+.+.....+.+++. .+.++|+||..... ......++.++
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~ 73 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA-------AIRDNYHRSGE 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-ccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhh-------HHHHHHhhcCC
Confidence 689999999999999999997543 356666766665556667654 46788999853211 11223456778
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++++...+.. ...+..++..+ +.
T Consensus 74 ~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------- 99 (164)
T cd04139 74 GFLLVFSITDMES-FTATAEFREQI----------------------------------------LR------------- 99 (164)
T ss_pred EEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH-------------
Confidence 8888877654321 11111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh--h---hHHHHhc-C-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--D---DVDKLAR-Q-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~---~~~~l~~-~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... . ....+.. + .+.+.+||.++.|++++.+.+.+.+
T Consensus 100 ----------~~-~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 161 (164)
T cd04139 100 ----------VK-DDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREI 161 (164)
T ss_pred ----------hc-CCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHH
Confidence 00 0124899999999999752 1 1112222 2 4688999999999999999998765
|
The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo |
| >TIGR02528 EutP ethanolamine utilization protein, EutP | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=106.20 Aligned_cols=74 Identities=27% Similarity=0.419 Sum_probs=48.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|++|+|||||+|.+++.... ++. ...+.+.+ .++||||...... .........++.+|++
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~---~~~------t~~~~~~~---~~iDt~G~~~~~~---~~~~~~~~~~~~ad~v 66 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL---YKK------TQAVEYND---GAIDTPGEYVENR---RLYSALIVTAADADVI 66 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc---ccc------ceeEEEcC---eeecCchhhhhhH---HHHHHHHHHhhcCCEE
Confidence 6899999999999999999987532 111 12234433 5789999632110 1112222346789999
Q ss_pred EEEecCCCc
Q 021103 144 LMVLDASKS 152 (317)
Q Consensus 144 ~~v~~~~~~ 152 (317)
++++|...+
T Consensus 67 ilv~d~~~~ 75 (142)
T TIGR02528 67 ALVQSATDP 75 (142)
T ss_pred EEEecCCCC
Confidence 999987643
|
This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 317 | ||||
| 4a9a_A | 376 | Structure Of Rbg1 In Complex With Tma46 Dfrp Domain | 1e-87 | ||
| 1udx_A | 416 | Crystal Structure Of The Conserved Protein Tt1381 F | 3e-12 | ||
| 1lnz_A | 342 | Structure Of The Obg Gtp-Binding Protein Length = 3 | 5e-12 | ||
| 1jal_A | 363 | Ychf Protein (Hi0393) Length = 363 | 5e-05 | ||
| 2qu8_A | 228 | Crystal Structure Of Putative Nucleolar Gtp-Binding | 2e-04 | ||
| 2dwq_A | 368 | Thermus Thermophilus Ychf Gtp-Binding Protein Lengt | 3e-04 | ||
| 2dby_A | 368 | Crystal Structure Of The Gtp-Binding Protein Ychf I | 3e-04 |
| >pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376 | Back alignment and structure |
|
| >pdb|1UDX|A Chain A, Crystal Structure Of The Conserved Protein Tt1381 From Thermus Thermophilus Hb8 Length = 416 | Back alignment and structure |
|
| >pdb|1LNZ|A Chain A, Structure Of The Obg Gtp-Binding Protein Length = 342 | Back alignment and structure |
|
| >pdb|1JAL|A Chain A, Ychf Protein (Hi0393) Length = 363 | Back alignment and structure |
|
| >pdb|2QU8|A Chain A, Crystal Structure Of Putative Nucleolar Gtp-Binding Protein 1 Pff0625w From Plasmodium Falciparum Length = 228 | Back alignment and structure |
|
| >pdb|2DWQ|A Chain A, Thermus Thermophilus Ychf Gtp-Binding Protein Length = 368 | Back alignment and structure |
|
| >pdb|2DBY|A Chain A, Crystal Structure Of The Gtp-Binding Protein Ychf In Complexed With Gdp Length = 368 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 2e-23 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 6e-19 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 6e-17 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 2e-16 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 7e-15 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 6e-10 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 5e-09 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 5e-09 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 2e-08 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 2e-08 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 4e-08 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 1e-07 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 1e-07 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 3e-07 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 5e-07 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 5e-07 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 8e-07 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 1e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 9e-06 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 1e-05 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 1e-05 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 2e-05 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 4e-05 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 4e-05 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 6e-05 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 8e-05 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 2e-04 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 5e-04 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 7e-04 |
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-23
Identities = 25/113 (22%), Positives = 55/113 (48%), Gaps = 3/113 (2%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124
+ L G P+VGKS+ + +++ + + SY FTT G + K Q++D PG+++ A
Sbjct: 32 IILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAF 91
Query: 125 EGKGRGRQ--VIAVSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRP 174
E + + A++ + ++L ++D S+ G + ++ + +
Sbjct: 92 ENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKS 144
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 6e-19
Identities = 38/186 (20%), Positives = 72/186 (38%), Gaps = 7/186 (3%)
Query: 3 IIEKI-KEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTK-- 59
II ++ + + + Q ++A + + + + + A E +
Sbjct: 104 IIRELEERYVERIRYSNDPNEIAELRRQFYGRVASVLRDIDDRLRYLNKAREVLKDLPVV 163
Query: 60 -FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
V + G P+VGKSTLL LT E ASY FTT G + Q++D PG
Sbjct: 164 DLEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPG 223
Query: 119 IIEGASEGKGRG--RQVIAVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPP 175
+++ + + ++A+ ++++ + D S+ G + E V P
Sbjct: 224 LLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPF 283
Query: 176 QIYFKK 181
+ K
Sbjct: 284 LVVINK 289
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Length = 342 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 6e-17
Identities = 45/116 (38%), Positives = 68/116 (58%), Gaps = 6/116 (5%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGA 123
V L+GFPSVGKSTLL++++ + A Y FTTL G++ +D + + DLPG+IEGA
Sbjct: 161 VGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGA 220
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHR-----QILTKELEAVGLRLNKRP 174
+G G G Q + + + +++ V+D S EG + +EL LRL +RP
Sbjct: 221 HQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERP 276
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 Length = 416 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 2e-16
Identities = 46/124 (37%), Positives = 66/124 (53%), Gaps = 26/124 (20%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP--GIIHYNDTKIQLL-DLPGIIE 121
V L+G+P+ GKS+LL +T H + A Y FTTL+ P G++ ++ + L D+PGIIE
Sbjct: 160 VGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS--PNLGVVEVSEEERFTLADIPGIIE 217
Query: 122 GASEGKGRGRQ---------VIAVSKSSDIVLMVLDASKS--EGHRQILTKELEAVGLRL 170
GASEGKG G + V+ L VLDA+ + + KE+ A L
Sbjct: 218 GASEGKGLGLEFLRHIARTRVL---------LYVLDAADEPLKTLETLR-KEVGAYDPAL 267
Query: 171 NKRP 174
+RP
Sbjct: 268 LRRP 271
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Length = 397 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 51/267 (19%), Positives = 92/267 (34%), Gaps = 79/267 (29%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT--------------------------- 96
+ ++G P+VGKST + T E A+Y FTT
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 97 LTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG-------RQVIAVSKSSDIVLMVLDA 149
G+ ++++D+ G++ GA EG+G G R ++ V+DA
Sbjct: 62 YEYRNGLAL---IPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMA-------SALIHVVDA 111
Query: 150 SKS---EGH----------RQILTKEL-----EAVGLRLNKRPPQIYFKKKKTGGISFNS 191
+ EG + L +E+ + +K + K+ K I S
Sbjct: 112 TGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDK-----FAKRIKLQKIKLES 166
Query: 192 TLPL----THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMK-CVYVYN 246
+ V+E ++ +H+ + + + DDL+ R+ K V N
Sbjct: 167 AIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQ----DDLLAFASEIRRVNKPMVIAAN 222
Query: 247 KIDVIG---IDDVDKLARQPNSVVISC 270
K D I + + + +VI
Sbjct: 223 KADAASDEQIKRLVREEEKRGYIVIPT 249
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 6e-10
Identities = 29/157 (18%), Positives = 63/157 (40%), Gaps = 17/157 (10%)
Query: 25 YHLGQLKAKIAKLRTQLLEPPKGSSGAGEGFEVTKFGH-GRVALIGFPSVGKSTLLTLLT 83
+H + + + +LE P+ + + G + + G +VGKS+ + L
Sbjct: 1 HHHHHHSSGLVPRGSHMLEDPRRYTM-----RLPDAGFRRYIVVAGRRNVGKSSFMNALV 55
Query: 84 GTH----SEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEGASEGKGRGRQVIAVSK 138
G + S+ A TT + + + + L+D PG+ + G+ R + V
Sbjct: 56 GQNVSIVSDYAG---TTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFY 112
Query: 139 SSDIVLMVLDASKSEGHRQILTKELEA---VGLRLNK 172
+D ++V D++ + ++ E + +NK
Sbjct: 113 RADCGILVTDSAPTPYEDDVVNLFKEMEIPFVVVVNK 149
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} Length = 188 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 5e-09
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+ALIG P+VGKST+ LTG + ++ T+ G YN K +++DLPG+ +
Sbjct: 9 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 68
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
S + R I +++ D+V+ ++DA+
Sbjct: 69 ANSIDEIIARDYI-INEKPDLVVNIVDAT 96
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* Length = 165 | Back alignment and structure |
|---|
Score = 53.6 bits (130), Expect = 5e-09
Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 3/89 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+ALIG P+VGKST+ LTG + ++ T+ G YN K +++DLPG+ +
Sbjct: 5 EIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLT 64
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
S + R I +++ D+V+ ++DA+
Sbjct: 65 ANSIDEIIARDYI-INEKPDLVVNIVDAT 92
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* Length = 274 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+ LIG P+ GK+TL LTG+ ++ T+ G D ++ L+DLPG +
Sbjct: 5 TIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLT 64
Query: 122 GASEGKGRGRQVIA---VSKSSDIVLMVLDAS 150
S Q+ +S +D+++ V+DAS
Sbjct: 65 TISSQTSLDEQIACHYILSGDADLLINVVDAS 96
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A Length = 258 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 2e-08
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+VAL G P+VGK++L LTGT A++ T+ G+ Y I L+DLPG +
Sbjct: 7 KVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLG 66
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
+S + R + + +D+V++V D+
Sbjct: 67 YSSIDEKIARDYL-LKGDADLVILVADSV 94
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} Length = 271 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 4e-08
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IEG 122
VAL+G P+VGK+T+ LTG ++ T+ GI+ Y + + ++DLPGI +
Sbjct: 6 VALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTA 65
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
S + R I + ++D+++ ++D++
Sbjct: 66 HSIDELIARNFI-LDGNADVIVDIVDST 92
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} Length = 256 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI---- 119
LIG P+ GK+TL LT + ++ T+ G + I++ DLPG+
Sbjct: 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLV 62
Query: 120 --IEGASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
EG S+ + Q + + D ++ V+DA
Sbjct: 63 ANAEGISQDEQIAAQSV-IDLEYDCIINVIDAC 94
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308 | Back alignment and structure |
|---|
Score = 51.3 bits (124), Expect = 1e-07
Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH----SEAASYEFTTLTCIPGIIHY-NDTKIQLLDLP 117
G VA++G P+VGKSTLL L GT S A TT + G+ + N+ +I LD P
Sbjct: 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAG---TTRMRVLGVKNIPNEAQIIFLDTP 67
Query: 118 GIIEGASEGK-GRG--RQVIAVSKSSDIVLMVLDASK--SEGHRQILTKELEAVG----L 168
GI E G + +D++L ++DA++ +I ++ + +
Sbjct: 68 GIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIV 127
Query: 169 RLNK 172
+NK
Sbjct: 128 VINK 131
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262 | Back alignment and structure |
|---|
Score = 49.8 bits (119), Expect = 3e-07
Identities = 19/117 (16%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 64 RVALIGFPSVGKSTLL-TLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122
V ++G VGKS+ + +L+ + ++ L + I ++D PG++E
Sbjct: 38 TVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEA 97
Query: 123 AS---EGKGRGRQVIAVSKSSDIVLMVLDASK---SEGHRQILTKELEAVGLRLNKR 173
+ + + + D++L V E +Q++ + G + +
Sbjct: 98 GYVNHQALELIKGFLVNR-TIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCK 153
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301 | Back alignment and structure |
|---|
Score = 49.4 bits (119), Expect = 5e-07
Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
G +A++G P+VGKSTLL L G S A TT I GI + +D PG
Sbjct: 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQ---TTRHRIVGIHTEGAYQAIYVDTPG 65
Query: 119 IIEGASEGKGRG--RQVIAVSKSSDIVLMVLDASK-SEGHRQILTKELEAVG----LRLN 171
+ R + + ++V+ V++ ++ + +L K L L +N
Sbjct: 66 LHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK-LREGKAPVILAVN 124
Query: 172 K 172
K
Sbjct: 125 K 125
|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 5e-07
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 281 ARMWEEMGLVRVYTKPQGQQPDFTEPVVL 309
+ + LVR+YTKP+GQ PD+T PVVL
Sbjct: 3 SGSSGYLKLVRIYTKPKGQLPDYTSPVVL 31
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301 | Back alignment and structure |
|---|
Score = 48.6 bits (117), Expect = 8e-07
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 10/106 (9%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTH----SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
G VA++G P+VGKSTLL L G S TT + GI+ +I +D PG
Sbjct: 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQ---TTRKRLRGILTEGRRQIVFVDTPG 64
Query: 119 IIEGASE-GKGRGRQVIAVSKSSDIVLMVLDASKS--EGHRQILTK 161
+ + G+ ++V + V+ V+D +
Sbjct: 65 LHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARA 110
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGI--IE 121
+ALIG P+ GK++L L+TG + ++ T+ G++ + +++ DLPGI +
Sbjct: 5 EIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV-KKNKDLEIQDLPGIYSMS 63
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDAS 150
S R + +S+ +D +L V+DA+
Sbjct: 64 PYSPEAKVARDYL-LSQRADSILNVVDAT 91
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 60/428 (14%), Positives = 108/428 (25%), Gaps = 178/428 (41%)
Query: 3 IIEKIKE------IEAEMARTQKNKA-------TEYHLGQLKAKIAKLRTQLLE--PPKG 47
++ IK + M Q+++ +Y++ +L+ KLR LLE P K
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQALLELRPAKN 152
Query: 48 SSGAGEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY- 106
V + G GK+ + + + + I +
Sbjct: 153 -----------------VLIDGVLGSGKTWVA-------LDVCL-SYKVQCKMDFKIFWL 187
Query: 107 --------NDTKIQLLDL---------------PGIIEGASEGKGRGRQVIAVSKSSDIV 143
L L I + R+++ SK +
Sbjct: 188 NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK-SKPYENC 246
Query: 144 LMVLD---------------------ASKS---------------EGHRQILTKE----- 162
L+VL K + H LT +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 163 -LEAVGLRLNKRPPQI-----------------------YFKK------KKTGGISFNST 192
L+ + R P ++ +K S N
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV- 365
Query: 193 LPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252
L + + + L +F A + ++ + ++ I
Sbjct: 366 --LEPAEYRKMFDRL---------SVFPPSAHIP--TILL--------SLIWFDVIKSDV 404
Query: 253 IDDVDKL------ARQPNSVVIS-----CNLKLNLDRLLA--RMWEEMGLVRVYTKPQG- 298
+ V+KL +QP IS LK+ L+ A R +V Y P+
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS-----IVDHYNIPKTF 459
Query: 299 QQPDFTEP 306
D P
Sbjct: 460 DSDDLIPP 467
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 9e-06
Identities = 30/127 (23%), Positives = 45/127 (35%), Gaps = 32/127 (25%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG--------IIHYNDTKIQLLD 115
+ G P+ GKSTLL L G E A ++ +PG ++ T +L D
Sbjct: 235 STVIAGKPNAGKSTLLNTLLG--QERA-----IVSHMPGTTRDYIEECFIHDKTMFRLTD 287
Query: 116 LPGI------IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLR 169
G+ IE EG R R + +D++L +LD +
Sbjct: 288 TAGLREAGEEIE--HEGIRRSRMKM---AEADLILYLLDLG------TERLDDELTEIRE 336
Query: 170 LNKRPPQ 176
L P
Sbjct: 337 LKAAHPA 343
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 1e-05
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 26/102 (25%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG--------IIHYNDTKIQLLD 115
+VA++G P+VGKS+LL + S+ A +T +PG + +Q+LD
Sbjct: 226 KVAIVGRPNVGKSSLLNAWSQ--SDRA-----IVTDLPGTTRDVVESQLVVGGIPVQVLD 278
Query: 116 LPGI------IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151
GI +E G R RQ ++D+VL+ +DA+
Sbjct: 279 TAGIRETSDQVE--KIGVERSRQAA---NTADLVLLTIDAAT 315
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-05
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 28/128 (21%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG--------IIHYNDTKIQLLD 115
+V + G P+ GKS+LL L G EAA +T I G IH + + ++D
Sbjct: 6 KVVIAGRPNAGKSSLLNALAG--REAA-----IVTDIAGTTRDVLREHIHIDGMPLHIID 58
Query: 116 LPGI------IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLR 169
G+ +E G R Q I + +D VL ++D + + R
Sbjct: 59 TAGLREASDEVE--RIGIERAWQEI---EQADRVLFMVDG--TTTDAVDPAEIWPEFIAR 111
Query: 170 LNKRPPQI 177
L + P
Sbjct: 112 LPAKLPIT 119
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 27/103 (26%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG--------IIHYNDTKIQLLD 115
R+ ++G P+VGKSTLL L + A +T IPG I +++D
Sbjct: 245 RMVIVGKPNVGKSTLLNRLLN--EDRA-----IVTDIPGTTRDVISEEIVIRGILFRIVD 297
Query: 116 LPGI-------IEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151
G+ +E G R Q I + +DIVL VLDAS
Sbjct: 298 TAGVRSETNDLVE--RLGIERTLQEI---EKADIVLFVLDASS 335
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270 | Back alignment and structure |
|---|
Score = 43.4 bits (102), Expect = 4e-05
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 8/117 (6%)
Query: 64 RVALIGFPSVGKSTLL-TLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122
+ ++G VGKS+ + +++ + ++ + + ++D PG+IEG
Sbjct: 41 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 100
Query: 123 AS---EGKGRGRQVIAVSKSSDIVLMVLDASK---SEGHRQILTKELEAVGLRLNKR 173
+ + K+ D++L V + + ++ G + +
Sbjct: 101 GYINDMALNIIKSFLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNK 156
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Length = 368 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 4e-05
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 21/86 (24%)
Query: 68 IGFPSVGKSTLLTLLTGTHSEAASYEFTT--------------LTCIPGIIHYND----- 108
+G P+VGKSTL LT ++ AA+Y F T L + +
Sbjct: 7 VGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPV 66
Query: 109 --TKIQLLDLPGIIEGASEGKGRGRQ 132
T ++ +D+ G+++GA +G+G G Q
Sbjct: 67 VPTHVEFVDIAGLVKGAHKGEGLGNQ 92
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Length = 363 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 6e-05
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 17/82 (20%)
Query: 68 IGFPSVGKSTLLTLLTGTHSEAASYEFTT--------------LTCIPGIIHYND---TK 110
+G P+VGKSTL LT EAA+Y F T L + I+ T
Sbjct: 8 VGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTT 67
Query: 111 IQLLDLPGIIEGASEGKGRGRQ 132
++ +D+ G++ GAS+G+G G +
Sbjct: 68 MEFVDIAGLVAGASKGEGLGNK 89
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 8e-05
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 14/123 (11%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEA-----ASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
VA+ G GKS+ + L G +E T+ P H N + DLPG
Sbjct: 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHP-YKHPNIPNVVFWDLPG 129
Query: 119 IIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIY 178
I ++ D +++ + I + + K+
Sbjct: 130 IGSTNFPPDTYLEKMKF--YEYDFFIIISATRFKKNDIDIAKA------ISMMKKEFYFV 181
Query: 179 FKK 181
K
Sbjct: 182 RTK 184
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 2e-04
Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 13/181 (7%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIE 121
R+ L+G GKS + G + + T C + +T++ ++D PGI +
Sbjct: 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFD 90
Query: 122 GASE----GKGRGRQVIAVSKSSDIVLMVLDASK-SEGHRQILTKELEAVGLRLNKRPPQ 176
K R ++ S +L+V+ + +E + K L+ G R
Sbjct: 91 TEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMIL 150
Query: 177 IYFKKKKTGGISFNSTLPLTHVDEKLCYQILHE----YKIHNAEVLFREDATVDDLIDVI 232
I+ +K G + + L E + + ++N ++A L+ +I
Sbjct: 151 IFTRKDDLGDTNLHDY--LREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLI 208
Query: 233 E 233
+
Sbjct: 209 Q 209
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190 | Back alignment and structure |
|---|
Score = 39.2 bits (92), Expect = 5e-04
Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 28/101 (27%)
Query: 65 VALIGFPSVGKSTLLTLLTG----THSEAASYEFTTLTCIPG----IIHYNDTKIQLLDL 116
+ G +VGKSTL+ LTG PG II +++D+
Sbjct: 4 IIFAGRSNVGKSTLIYRLTGKKVRRGKR------------PGVTRKIIEIEWKNHKIIDM 51
Query: 117 PGI-IEGASEGKGRG-------RQVIAVSKSSDIVLMVLDA 149
PG + + + +K+ D+ ++V+D
Sbjct: 52 PGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDG 92
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 7e-04
Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 19/99 (19%)
Query: 64 RVALIGFPSVGKSTLLTLLTG-----THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
+ LIG P+VGKS+L+ + G + A TT + YN + ++D G
Sbjct: 177 QFCLIGRPNVGKSSLVNAMLGEERVIVSNVAG----TTRDAVDTSFTYNQQEFVIVDTAG 232
Query: 119 I-----IEGASE--GKGRGRQVIAVSKSSDIVLMVLDAS 150
+ + +E R + I S++V +VLD
Sbjct: 233 MRKKGKVYETTEKYSVLRALKAI---DRSEVVAVVLDGE 268
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| 4a9a_A | 376 | Ribosome-interacting GTPase 1; DRG-DFRP complex, r | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.95 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.95 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.95 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.94 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.94 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.94 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.94 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.94 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.94 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.94 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.94 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.94 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.94 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.94 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.94 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.93 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.93 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.93 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.93 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.93 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.93 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.93 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.93 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.92 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.92 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.91 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.91 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.91 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.91 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.91 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.91 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.91 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 99.9 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.9 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.9 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.9 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.89 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.89 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.88 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.88 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.87 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 99.87 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.87 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.86 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.86 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.86 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.86 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 99.85 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 99.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.85 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.84 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.84 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.82 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.82 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.81 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.81 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.81 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.81 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.81 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.81 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.81 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.8 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 99.8 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.79 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 99.79 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.79 | |
| 1xzp_A | 482 | Probable tRNA modification GTPase TRME; GTP-bindin | 99.78 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 99.78 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 99.78 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 99.78 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 99.78 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 99.77 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 99.77 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.76 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 99.76 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.76 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 99.76 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.75 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 99.75 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 99.75 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 99.75 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 99.74 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 99.74 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 99.74 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 99.72 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 99.71 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.69 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.68 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.68 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.66 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 99.66 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 99.66 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 99.66 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.66 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 99.65 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 99.65 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.65 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 99.65 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 99.65 | |
| 3qq5_A | 423 | Small GTP-binding protein; hydrogenase, H-cluster, | 99.64 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.64 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 99.64 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.64 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.63 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 99.63 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 99.63 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 99.63 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 99.62 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.61 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.61 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.61 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 99.61 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 99.61 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 99.6 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 99.59 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 99.59 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 99.59 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 99.59 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 99.59 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 99.59 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 99.59 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 99.59 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 99.58 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 99.58 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 99.58 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 99.58 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 99.58 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 99.58 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 99.58 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 99.58 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 99.58 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 99.58 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 99.58 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 99.58 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 99.58 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 99.58 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 99.58 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 99.58 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 99.58 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 99.58 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 99.57 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 99.57 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.57 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 99.57 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 99.57 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 99.57 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.57 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 99.57 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 99.57 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 99.57 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 99.57 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 99.56 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 99.56 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 99.56 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 99.56 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 99.56 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 99.56 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 99.56 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 99.56 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 99.56 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.55 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 99.55 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 99.55 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 99.55 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 99.55 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 99.55 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 99.54 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 99.54 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 99.54 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 99.54 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 99.54 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 99.54 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.54 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 99.54 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.54 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 99.54 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 99.54 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 99.53 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 99.53 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 99.53 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.53 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.53 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 99.53 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 99.53 | |
| 1wb1_A | 482 | Translation elongation factor SELB; selenocysteine | 99.53 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 99.53 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 99.53 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 99.52 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.52 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 99.52 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 99.52 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 99.51 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 99.51 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 99.51 | |
| 3izq_1 | 611 | HBS1P, elongation factor 1 alpha-like protein; NO- | 99.51 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 99.51 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 99.51 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 99.5 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 99.5 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 99.5 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 99.5 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 99.5 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 99.5 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 99.49 | |
| 3o47_A | 329 | ADP-ribosylation factor GTPase-activating protein | 99.49 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 99.49 | |
| 3sjy_A | 403 | Translation initiation factor 2 subunit gamma; zin | 99.49 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 99.48 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 99.48 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 99.48 | |
| 3j2k_7 | 439 | ERF3, eukaryotic polypeptide chain release factor | 99.48 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 99.48 | |
| 3tr5_A | 528 | RF-3, peptide chain release factor 3; protein synt | 99.48 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 99.47 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 99.47 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 99.47 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 99.47 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 99.47 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 99.46 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 99.45 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 99.45 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 99.44 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.44 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.44 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.44 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 99.43 | |
| 2wkq_A | 332 | NPH1-1, RAS-related C3 botulinum toxin substrate 1 | 99.42 | |
| 1kk1_A | 410 | EIF2gamma; initiation of translation; HET: GNP; 1. | 99.42 | |
| 3p26_A | 483 | Elongation factor 1 alpha-like protein; GTP/GDP bi | 99.41 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 99.41 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 99.39 | |
| 2elf_A | 370 | Protein translation elongation factor 1A; tRNA, py | 99.39 | |
| 2c78_A | 405 | Elongation factor TU-A; hydrolase, GTPase, transla | 99.38 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 99.08 | |
| 1s0u_A | 408 | EIF-2-gamma, translation initiation factor 2 gamma | 99.38 | |
| 3izy_P | 537 | Translation initiation factor IF-2, mitochondrial; | 99.38 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 99.38 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.37 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 99.36 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 99.35 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.34 | |
| 3mca_A | 592 | HBS1, elongation factor 1 alpha-like protein; prot | 99.34 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.33 | |
| 3dpu_A | 535 | RAB family protein; roccor, G-domain, COR, GTP-bin | 99.33 | |
| 1zun_B | 434 | Sulfate adenylate transferase, subunit 1/adenylyls | 99.32 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 99.32 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.3 | |
| 2ywe_A | 600 | GTP-binding protein LEPA; G domain, beta-barrel, f | 99.3 | |
| 1d2e_A | 397 | Elongation factor TU (EF-TU); G-protein, beta-barr | 99.3 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 99.29 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 99.29 | |
| 3cb4_D | 599 | GTP-binding protein LEPA; GTPase, OB-fold, membran | 99.28 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.28 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.25 | |
| 1jny_A | 435 | EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF- | 99.25 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.24 | |
| 3zvr_A | 772 | Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito | 99.24 | |
| 1zo1_I | 501 | IF2, translation initiation factor 2; E. coli, rib | 99.24 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 99.24 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 99.23 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 99.23 | |
| 1f60_A | 458 | Elongation factor EEF1A; protein-protein complex, | 99.23 | |
| 2xex_A | 693 | Elongation factor G; GTPase, translation, biosynth | 99.22 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 99.21 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.21 | |
| 1dar_A | 691 | EF-G, elongation factor G; ribosomal translocase, | 99.2 | |
| 2h5e_A | 529 | Peptide chain release factor RF-3; beta barrel, tr | 99.19 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.19 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.19 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 99.17 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.17 | |
| 3c5h_A | 255 | Glucocorticoid receptor DNA-binding factor 1; RAS, | 99.16 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.15 | |
| 1g7s_A | 594 | Translation initiation factor IF2/EIF5B; translati | 99.14 | |
| 1r5b_A | 467 | Eukaryotic peptide chain release factor GTP-bindi | 99.1 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.1 | |
| 3avx_A | 1289 | Elongation factor TS, elongation factor TU, linke | 99.09 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 99.07 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.07 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.04 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.03 | |
| 3vqt_A | 548 | RF-3, peptide chain release factor 3; translation, | 99.02 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.01 | |
| 2rdo_7 | 704 | EF-G, elongation factor G; elongation factor G, EF | 99.01 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 99.01 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 99.01 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.99 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 98.99 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.98 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.98 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.97 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.93 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.93 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.93 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 98.92 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.91 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.89 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.87 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.87 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 98.87 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.86 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.83 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 98.83 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.81 | |
| 1n0u_A | 842 | EF-2, elongation factor 2; G-protein, CIS-proline, | 98.81 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.79 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.79 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 98.79 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.78 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 98.75 | |
| 3j25_A | 638 | Tetracycline resistance protein TETM; antibiotic r | 98.75 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.75 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.74 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.71 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 98.71 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.67 | |
| 3r7w_B | 331 | Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT | 98.65 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.63 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 98.61 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.6 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.57 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.56 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 98.56 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.55 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.54 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.54 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.53 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.52 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.48 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.47 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 98.44 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.43 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.43 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 98.41 | |
| 4fn5_A | 709 | EF-G 1, elongation factor G 1; translation, transl | 98.37 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.36 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.32 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.31 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.31 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 98.3 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.3 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.29 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.28 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.26 | |
| 3q5d_A | 447 | Atlastin-1; G protein, GTPase, GDP/GTP binding, hy | 98.24 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.23 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.18 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.18 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.18 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 98.14 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.13 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.12 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 98.11 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.1 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.09 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 98.07 | |
| 2eki_A | 93 | DRG 1, developmentally-regulated GTP-binding prote | 98.03 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.01 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.98 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 97.96 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.96 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.84 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.83 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.82 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.81 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.75 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.73 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.7 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.67 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.67 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.67 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.64 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.63 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.62 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.61 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.4 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.4 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.38 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.37 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.36 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.35 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.35 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.32 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.32 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.3 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.3 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.3 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.29 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.27 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.24 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.22 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.21 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.06 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.06 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.03 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.02 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.02 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.0 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.98 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 96.97 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.94 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.94 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.9 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.88 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.78 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.76 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.73 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.68 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.68 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.66 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 96.65 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 96.64 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.61 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.6 | |
| 1cip_A | 353 | Protein (guanine nucleotide-binding protein alpha- | 96.59 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.58 | |
| 1zcb_A | 362 | G alpha I/13; GTP-binding, lipoprotein, membrane, | 96.55 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.54 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.53 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.53 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.52 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 96.51 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 96.5 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.49 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.49 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.46 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 96.43 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.43 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.42 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.42 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 96.42 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.39 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.39 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.38 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.37 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.36 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.36 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.35 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.34 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.31 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.31 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.3 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 96.3 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 96.3 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.3 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.28 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 96.25 | |
| 4ido_A | 457 | Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE | 96.24 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.23 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.22 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.2 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.19 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.18 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.17 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 96.15 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 96.15 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.14 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.11 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.1 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.07 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.07 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.06 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.05 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.05 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.04 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.01 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 95.97 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 95.96 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 95.91 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.87 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.87 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.87 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.86 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 95.81 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 95.8 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.79 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.78 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.78 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.73 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.73 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.7 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.7 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 95.66 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.64 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.6 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.58 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 95.53 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 95.5 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 95.5 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 95.44 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.39 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 95.35 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.33 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.29 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.25 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 95.24 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 95.22 |
| >4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=353.85 Aligned_cols=314 Identities=58% Similarity=0.954 Sum_probs=276.4
Q ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCCCCCCC--CCCCCcEEEEeCCcEEEEEcCCCCcHHHHH
Q 021103 2 GIIEKIKEIEAEMARTQKNKATEYHLGQLKAKIAKLRTQLLEPPKGSS--GAGEGFEVTKFGHGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 2 ~~~~~i~~~~~~i~~~~~~k~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~valiG~ngaGKSTLl 79 (317)
|++|||+++|++++++|+||||++++.+|++|++++++++.....++. +++.+|.+..++...|||||+|||||||||
T Consensus 10 t~~eki~~ie~~~~~~~k~k~Te~~~~~lk~kla~lr~el~~~~~~~~~~~~~~~f~v~k~g~a~V~ivG~PNvGKSTL~ 89 (376)
T 4a9a_A 10 TTVEKIKAIEDEMARTQKNKATSFHLGQLKAKLAKLRRELLTSASSGSGGGAGIGFDVARTGVASVGFVGFPSVGKSTLL 89 (376)
T ss_dssp HHHHHHHHHHHHHHHSCCSTTTHHHHHHHHHHHHHHHHHHHCC-------CCSBTTTBCBCSSEEEEEECCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCceEeecCCCeEEEECCCCCCHHHHH
Confidence 689999999999999999999999999999999999999876554433 335678888888899999999999999999
Q ss_pred HHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHH
Q 021103 80 TLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQIL 159 (317)
Q Consensus 80 n~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~ 159 (317)
|+|+|....+++|||||++|..|.+.+.|.++.++||||+.+....+.+.+.+++..++.+|++++++|+.++..+.+.+
T Consensus 90 n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i 169 (376)
T 4a9a_A 90 SKLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQII 169 (376)
T ss_dssp HHHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHH
T ss_pred HHHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHH
Confidence 99999988899999999999999999999999999999999887777888889999999999999999998877777788
Q ss_pred HHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc-ccce
Q 021103 160 TKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG-NRKY 238 (317)
Q Consensus 160 ~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~-~~~~ 238 (317)
...|+.+++.+.+++..+....+.+.++.+....|..++|.+.+..++..+......+++.-+.+.+++++.+.. .+.+
T Consensus 170 ~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~d~~~~~~~~~ 249 (376)
T 4a9a_A 170 EKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLIDVLEASSRRY 249 (376)
T ss_dssp HHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHHHHHTTTTCEE
T ss_pred HHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHHHHHHHHHhhc
Confidence 888999998778888887777777888888888899999999999988888777777777778888898888754 5678
Q ss_pred eeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc-cee
Q 021103 239 MKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV-CYI 315 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~-~~v 315 (317)
.|++++.||+|....++++.+.+.+..+++|+..+.|+++|.+.+++.|+.+++||+.|+..++|..|++++++ +||
T Consensus 250 ~p~i~v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~ 327 (376)
T 4a9a_A 250 MPAIYVLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSV 327 (376)
T ss_dssp ECEEEEEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBH
T ss_pred cceEEEEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcH
Confidence 99999999999999888888888889999999999999999999999999999999999999999999999987 775
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-29 Score=227.97 Aligned_cols=177 Identities=17% Similarity=0.177 Sum_probs=128.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|+..| ++|.|.++|.++...++ -........++++|
T Consensus 21 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~i~~~~~--~~~~~~r~ig~vfQ 87 (359)
T 3fvq_A 21 NDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP-----------DSGEISLSGKTIFSKNT--NLPVRERRLGYLVQ 87 (359)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEESSSC--BCCGGGSCCEEECT
T ss_pred EeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CCcEEEECCEECccccc--ccchhhCCEEEEeC
Confidence 478899999999999999999999999999999988 89999999998732111 11112234555555
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 88 ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts 167 (359)
T 3fvq_A 88 EGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFS 167 (359)
T ss_dssp TCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4443333 23333322211 223345678899999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh----cccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHEY----KIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~l----~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....++..+ +..+ ++|++|||.+ +..++ ..++|+++.-+..
T Consensus 168 ~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~a----------Dri~vl~~G~i~~ 219 (359)
T 3fvq_A 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYA----------DRIAVMKQGRILQ 219 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHC----------SEEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHC----------CEEEEEECCEEEE
Confidence 99999866665433 2334 9999999954 33443 4577888776653
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-29 Score=222.74 Aligned_cols=177 Identities=19% Similarity=0.161 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+...+........++++|
T Consensus 22 ~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 90 (235)
T 3tif_A 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (235)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CceEEEECCEEcccCCHHHHHHHhhccEEEEec
Confidence 478899999999999999999999999999999988 899999999765211100000000001111122
Q ss_pred HHhhhcc---CcEEEEEec-----CCCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKS---SDIVLMVLD-----ASKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~-----~~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+.. .+++.+... ........+.+.++|+.+++ . .++++.+|||||+||++|| +++|
T Consensus 91 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 1111111 111111110 11122334567888999998 2 3889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
|||++||+.....+++.+ .. ..++|++|||.+...++ ..++++++..+
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~----------d~i~~l~~G~i 223 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG----------ERIIYLKDGEV 223 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTS----------SEEEEEETTEE
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhC----------CEEEEEECCEE
Confidence 999999999866655544 33 34999999997544433 44667766544
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.95 E-value=4.5e-29 Score=230.41 Aligned_cols=178 Identities=19% Similarity=0.208 Sum_probs=123.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+++..|+++||+||||||||||+++|+|+..| ++|.|.++|.++...+...+ ...+..+++++|
T Consensus 45 ~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p-----------~~G~I~i~G~~i~~~~~~~~-~~~r~~Ig~v~Q 112 (366)
T 3tui_C 45 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESEL-TKARRQIGMIFQ 112 (366)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECSSCCHHHH-HHHHTTEEEECS
T ss_pred EeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECCcCCHHHH-HHHhCcEEEEeC
Confidence 478899999999999999999999999999999988 89999999987632110000 001122333333
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+... ........+++.++|+.+|+ ..++++.+||||||||++|| |++||||+
T Consensus 113 ~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs 192 (366)
T 3tui_C 113 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATS 192 (366)
T ss_dssp SCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred CCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 2222211 122222111 11223345678899999999 68899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCC
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+||+.....+++.+ .. .+ |+|++|||... .++|| .++|+++.-++.
T Consensus 193 ~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aD----------rv~vl~~G~iv~ 244 (366)
T 3tui_C 193 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICD----------CVAVISNGELIE 244 (366)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCS----------EEEEEETTEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCC----------EEEEEECCEEEE
Confidence 99999866655544 32 24 99999999654 34444 467777665543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=226.39 Aligned_cols=174 Identities=21% Similarity=0.250 Sum_probs=126.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|+..| ++|.|.++|.++.. .+ .....+++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-----------~~G~I~i~G~~~~~--~~----~~~r~ig~VfQ 82 (381)
T 3rlf_A 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMND--TP----PAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--CC----GGGSCEEEECT
T ss_pred eeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCC-----------CCeEEEECCEECCC--CC----HHHCCEEEEec
Confidence 478899999999999999999999999999999988 89999999987631 11 11233455555
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 4433332 2333332221 1223345678899999999 78899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCCh
Q 021103 197 HVDEKLCYQILHEY---KI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGI 253 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~ 253 (317)
+||+.....+++.+ .. .+ ++|++|||.+ +..++ ..++|+++.-+...
T Consensus 163 ~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~a----------Dri~vl~~G~i~~~ 215 (381)
T 3rlf_A 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA----------DKIVVLDAGRVAQV 215 (381)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHC----------SEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhC----------CEEEEEECCEEEEE
Confidence 99998765554444 32 24 9999999954 44444 45778887766543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-29 Score=216.03 Aligned_cols=164 Identities=15% Similarity=0.182 Sum_probs=108.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+............++.+|
T Consensus 21 ~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q 89 (224)
T 2pcj_A 21 KGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAP-----------TEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQ 89 (224)
T ss_dssp EEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCC-----------SEEEEEETTEECCSSCHHHHHHHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCCCCHHHHHHHHhCcEEEEec
Confidence 478899999999999999999999999999999988 899999999765211000000000001111111
Q ss_pred HHhhhc---cCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+... ........+.+.++|+.+++ ..++++.+|||||+||+++| +++||||+
T Consensus 90 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~ 169 (224)
T 2pcj_A 90 FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTG 169 (224)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111110 0111111111 11112234567889999999 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
+||+.....+++.+ ...+ ++|++|||....+
T Consensus 170 ~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~ 204 (224)
T 2pcj_A 170 NLDSANTKRVMDIFLKINEGGTSIVMVTHERELAE 204 (224)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 99999866555444 3334 9999999955433
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-28 Score=216.19 Aligned_cols=176 Identities=16% Similarity=0.127 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++. .+..... ......++++|
T Consensus 41 ~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~-~~~~~~~-~~~~~i~~v~Q 107 (263)
T 2olj_A 41 KGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDF-----------DEGEIIIDGINLK-AKDTNLN-KVREEVGMVFQ 107 (263)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEESS-STTCCHH-HHHHHEEEECS
T ss_pred EeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCEECC-CccccHH-HHhCcEEEEeC
Confidence 578899999999999999999999999999999988 8999999997653 1110000 00001111111
Q ss_pred HHhhhc---cCcEEEEEe-c--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIAVSK---SSDIVLMVL-D--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~-~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
....+. ..+++.+.. . ........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 108 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPt 187 (263)
T 2olj_A 108 RFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPT 187 (263)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence 111111 111111110 1 11112234567889999999 67889999999999999998 8999999
Q ss_pred CCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++.+ ...+ ++|++|||.+. .+++ ..++++++.-+.
T Consensus 188 s~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~----------d~v~~l~~G~i~ 238 (263)
T 2olj_A 188 SALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVG----------DRVLFMDGGYII 238 (263)
T ss_dssp TTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999866555544 3334 89999999543 3344 346666665443
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-28 Score=215.90 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=111.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 89 (257)
T 1g6h_A 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEP---AELYHYGIVRTFQ 89 (257)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHHHHHTEEECCC
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCEECCCCCH---HHHHhCCEEEEcc
Confidence 467788889999999999999999999999999988 89999999976521100 0000011122222
Q ss_pred HHhhh---ccCcEEEEEecC---------------CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----
Q 021103 133 VIAVS---KSSDIVLMVLDA---------------SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~---------------~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---- 188 (317)
....+ ...+++.+.... .......+.+.++|+.+++ ..++++.+|||||+||++||
T Consensus 90 ~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~ 169 (257)
T 1g6h_A 90 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM 169 (257)
T ss_dssp CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred CCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHH
Confidence 11111 112222221111 1112234567889999999 67889999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 189 -----FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+++||||++||+.....+++.+ ...+ ++|++|||.. +..++|
T Consensus 170 ~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d 221 (257)
T 1g6h_A 170 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID 221 (257)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 9999999999999866655544 3334 9999999955 344443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-27 Score=220.56 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=123.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 32 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 94 (355)
T 1z47_A 32 RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP-----------TKGDVWIGGKRVT--DLP----PQKRNVGLVFQ 94 (355)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TCC----GGGSSEEEECG
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEECCEECC--cCC----hhhCcEEEEec
Confidence 478999999999999999999999999999999988 8999999998752 111 12233444455
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 95 ~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 174 (355)
T 1z47_A 95 NYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFA 174 (355)
T ss_dssp GGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 4433332 23332222111 122234578889999999 67899999999999999998 89999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 175 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 225 (355)
T 1z47_A 175 AIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVA----------DRVLVLHEGNVE 225 (355)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 339999999954 33444 346677766544
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-27 Score=211.60 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=119.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. .. ...+...++++|
T Consensus 25 ~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p-----------~~G~I~~~G~~i~~~~~-~~-~~~~~~ig~v~Q 91 (275)
T 3gfo_A 25 KGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKP-----------SSGRILFDNKPIDYSRK-GI-MKLRESIGIVFQ 91 (275)
T ss_dssp EEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCCSHH-HH-HHHHHSEEEECS
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC-----------CCeEEEECCEECCcccc-cH-HHHhCcEEEEEc
Confidence 578899999999999999999999999999999988 89999999987621000 00 000111222222
Q ss_pred HHh--h--hccCcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCC
Q 021103 133 VIA--V--SKSSDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPL 195 (317)
Q Consensus 133 ~~~--~--~~~~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt 195 (317)
... . ....+.+.+... ........+++.++|+.+++ ..++++.+|||||+||++|| +++||||
T Consensus 92 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPt 171 (275)
T 3gfo_A 92 DPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPT 171 (275)
T ss_dssp SGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTT
T ss_pred CcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECcc
Confidence 110 0 011111111111 11222335578889999999 67899999999999999998 9999999
Q ss_pred CCCCHHHHHHHHH---Hhc-ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 196 THVDEKLCYQILH---EYK-IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 196 ~~LD~~~~~~~l~---~l~-~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||+.....+++ .+. ..+ ++|++|||... .++| ..++++++.-+.
T Consensus 172 s~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~----------drv~~l~~G~i~ 223 (275)
T 3gfo_A 172 AGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYC----------DNVFVMKEGRVI 223 (275)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGC----------SEEEEEETTEEE
T ss_pred ccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhC----------CEEEEEECCEEE
Confidence 9999988655544 443 324 99999999554 3444 446677766544
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-27 Score=210.60 Aligned_cols=171 Identities=19% Similarity=0.195 Sum_probs=117.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.. +++||+||||||||||+++|+|...| .+|.|.++|.++.. .+. .....++.+|
T Consensus 16 ~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~--~~~----~~~~i~~v~q 77 (240)
T 2onk_A 16 LNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITP--LPP----ERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SCT----TTSCCBCCCS
T ss_pred eeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCC-----------CceEEEECCEECCc--Cch----hhCcEEEEcC
Confidence 578899999 99999999999999999999999988 89999999986521 111 1112222222
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+...........+.+.++|+.+++ ..++++.+|||||+||+++| +++||||++|
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 2111111 12221111111111224567889999999 57889999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+++.+ .. ..++|++|||.. +..++| .++++++.-+.
T Consensus 158 D~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d----------~i~~l~~G~i~ 206 (240)
T 2onk_A 158 DLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD----------EVAVMLNGRIV 206 (240)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS----------EEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 999866555544 32 349999999954 344443 46666665444
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-27 Score=221.67 Aligned_cols=172 Identities=20% Similarity=0.250 Sum_probs=122.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 82 (359)
T 2yyz_A 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP-----------TSGEIYFDDVLVN--DIP----PKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGTTEEEECS
T ss_pred eeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC-----------CccEEEECCEECC--CCC----hhhCcEEEEec
Confidence 478899999999999999999999999999999988 8999999998752 111 11223344444
Q ss_pred HHhhhcc---CcEEEEEecCCCc--hhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKS--EGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~--~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+....... ....+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 3322222 2233222221111 1223568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+. ..++ ..++++++.-+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a----------dri~vl~~G~i~ 213 (359)
T 2yyz_A 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMA----------SRIAVFNQGKLV 213 (359)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 2399999999543 3444 346777776554
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-27 Score=220.60 Aligned_cols=172 Identities=19% Similarity=0.219 Sum_probs=120.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 28 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 90 (372)
T 1v43_A 28 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVT--YLP----PKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGGTEEEEEC
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECC--CCC----hhhCcEEEEec
Confidence 478899999999999999999999999999999988 8999999998752 111 11223444445
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 4433332 22232222111 122234568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||... ..++ ..++++++.-+.
T Consensus 171 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 221 (372)
T 1v43_A 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG----------DRIAVMNRGQLL 221 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 2499999999543 3444 346677766554
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-27 Score=221.63 Aligned_cols=174 Identities=19% Similarity=0.203 Sum_probs=123.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec----CCCccccccCCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD----LPGIIEGASEGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d----~~g~~~~~~~~~~ 128 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++.... .+. .....+
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~~~~~~~~~~~~~----~~r~ig 84 (372)
T 1g29_1 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPEKGIFVPP----KDRDIA 84 (372)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGGGTEECCG----GGSSEE
T ss_pred eeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCC-----------CccEEEECCEECccccccccCCH----hHCCEE
Confidence 478899999999999999999999999999999988 8999999999875310 111 122344
Q ss_pred hHHHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 129 RGRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 129 ~~~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
+++|....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++|
T Consensus 85 ~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLD 164 (372)
T 1g29_1 85 MVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMD 164 (372)
T ss_dssp EECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 44443322222 22222222111 122234568889999999 67899999999999999998 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+.+.+. . ..++|++|||.+. ..++ ..++++++.-+.
T Consensus 165 EP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 219 (372)
T 1g29_1 165 EPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG----------DRIAVMNRGVLQ 219 (372)
T ss_dssp CTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhC----------CEEEEEeCCEEE
Confidence 9999999998666555443 2 2399999999543 3444 346777766554
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-28 Score=222.78 Aligned_cols=174 Identities=14% Similarity=0.187 Sum_probs=124.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec---CCCccccccCCchh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD---LPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d---~~g~~~~~~~~~~~ 129 (317)
.++++++..|++++|+|||||||||||++|+|+..| ++|.|.++|.++...+ .+. .....++
T Consensus 22 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~~~~~~~~~~----~~r~ig~ 86 (353)
T 1oxx_K 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGKLIVPP----EDRKIGM 86 (353)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTEESSCG----GGSCEEE
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCEECcccccccCCh----hhCCEEE
Confidence 378899999999999999999999999999999988 8999999998875311 111 1233444
Q ss_pred HHHHHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecC
Q 021103 130 GRQVIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 130 ~~~~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
++|....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||
T Consensus 87 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDE 166 (353)
T 1oxx_K 87 VFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDE 166 (353)
T ss_dssp EETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4444333322 23333322211 122234578899999999 67899999999999999998 99999
Q ss_pred CCCCCCHHHHHHHHHHh---cc--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 194 PLTHVDEKLCYQILHEY---KI--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l---~~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||++||+.....+.+.+ .. ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 167 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~a----------dri~vl~~G~i~ 220 (353)
T 1oxx_K 167 PFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA----------DRVGVLVKGKLV 220 (353)
T ss_dssp TTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 99999998765555444 32 239999999954 33444 346677766544
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.4e-28 Score=214.82 Aligned_cols=178 Identities=17% Similarity=0.145 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEe--------cCCCc-cccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLL--------DLPGI-IEGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~--------d~~g~-~~~~ 123 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++... +.+.. ....
T Consensus 23 ~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 23 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEccccccccccccccChhhHHHH
Confidence 478899999999999999999999999999999988 899999999875310 00000 0000
Q ss_pred cCCchhHHHHHhhhc---cCcEEEEEe-cC--CCchhhHHHHHHHHHHccc--c-ccccCCcccccceeeeeeE------
Q 021103 124 SEGKGRGRQVIAVSK---SSDIVLMVL-DA--SKSEGHRQILTKELEAVGL--R-LNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~---~~d~i~~v~-~~--~~~~~~~~~~~~~L~~~~l--~-~~~~~~~LS~g~~qr~~ia------ 188 (317)
....++++|....+. ..+++.+.. .. .......+.+.++|+.+++ . .++++.+|||||+||++||
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 001111111111111 111111110 11 1112234567889999999 5 7899999999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ ...+ ++|++|||... ..++| .++++++.-+.
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d----------~v~~l~~G~i~ 232 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSS----------HVIFLHQGKIE 232 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCS----------EEEEEETTEEE
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9999999999999866555444 3334 99999999543 33443 46667665444
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=220.51 Aligned_cols=172 Identities=19% Similarity=0.224 Sum_probs=122.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| ++|.|.++|.++. +.+ ......++++|
T Consensus 20 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~i~g~~i~--~~~----~~~r~ig~v~Q 82 (362)
T 2it1_A 20 NNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKP-----------TSGKIYFDEKDVT--ELP----PKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----GGGTTEEEECT
T ss_pred EeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCC-----------CceEEEECCEECC--cCC----HhHCcEEEEec
Confidence 578899999999999999999999999999999988 8999999998752 111 11223344444
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 3322222 2223222211 1122234568889999999 67899999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHhc---c--cCcEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHEYK---I--HNAEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~---~--~~~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+.+.+. . ..++|++|||.+ +..++ ..++++++.-+.
T Consensus 163 ~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~a----------dri~vl~~G~i~ 213 (362)
T 2it1_A 163 NLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMA----------DRIAVIREGEIL 213 (362)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC----------CEEEEEECCEEE
Confidence 999998666555443 2 339999999954 33444 346677766554
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-27 Score=209.53 Aligned_cols=164 Identities=16% Similarity=0.130 Sum_probs=109.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+. ........++.+|
T Consensus 23 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~---~~~~~~~i~~v~q 88 (240)
T 1ji0_A 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKPA---HVINRMGIALVPE 88 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHHHHTTEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCceEEECCEECCCCCH---HHHHhCCEEEEec
Confidence 467899999999999999999999999999999988 89999999976521100 0000011122222
Q ss_pred HHhhhc---cCcEEEEEe-cCCCchhhHHHHHHHHHHcc-c--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL-DASKSEGHRQILTKELEAVG-L--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~-~~~~~~~~~~~~~~~L~~~~-l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. .........+.+.++++.++ + ..++++.+|||||+||++|| +++||||+
T Consensus 89 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 168 (240)
T 1ji0_A 89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred CCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 111111 111111111 00112223456778888884 7 67889999999999999998 99999999
Q ss_pred CCCHHHHHHHHHHh---cccC-cEEEecCCCC-hhhHHH
Q 021103 197 HVDEKLCYQILHEY---KIHN-AEVLFREDAT-VDDLID 230 (317)
Q Consensus 197 ~LD~~~~~~~l~~l---~~~~-~~i~~shd~~-~~~~~~ 230 (317)
+||+.....+++.+ ...+ ++|++|||.. +.+++|
T Consensus 169 ~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d 207 (240)
T 1ji0_A 169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCC
Confidence 99999866555544 3334 9999999963 445443
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-28 Score=221.66 Aligned_cols=171 Identities=13% Similarity=0.146 Sum_probs=119.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++..|++++|+|||||||||||++|+|...| ++|.|.++|.++. +.+ ......++++|
T Consensus 17 ~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p-----------~~G~I~~~g~~i~--~~~----~~~r~ig~v~Q 79 (348)
T 3d31_A 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVT--DLS----PEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----HHHHTCEEECT
T ss_pred eeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC-----------CCcEEEECCEECC--CCc----hhhCcEEEEec
Confidence 578899999999999999999999999999999988 8999999998652 111 11122333333
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+.......... +++.++|+.+++ ..++++.+|||||+||++|| +++||||++|
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~L 158 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccC
Confidence 3222221 1222221111000112 568889999999 67899999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhc---c-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCC
Q 021103 199 DEKLCYQILHEYK---I-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 199 D~~~~~~~l~~l~---~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|+.....+.+.+. . .+ ++|++|||.. +..++| .++++++.-+.
T Consensus 159 D~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad----------ri~vl~~G~i~ 207 (348)
T 3d31_A 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD----------RIAVVMDGKLI 207 (348)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS----------EEEEESSSCEE
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----------EEEEEECCEEE
Confidence 9998665555443 2 24 9999999954 344443 46677766544
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.3e-28 Score=215.21 Aligned_cols=174 Identities=17% Similarity=0.117 Sum_probs=116.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. .......++.+|
T Consensus 28 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~~~~~~----~~~~~~i~~v~q 92 (266)
T 4g1u_C 28 NDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSP-----------SHGECHLLGQNLNSWQP----KALARTRAVMRQ 92 (266)
T ss_dssp EEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCC-----------SSCEEEETTEETTTSCH----HHHHHHEEEECS
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCEECCcCCH----HHHhheEEEEec
Confidence 578899999999999999999999999999999988 89999999986421100 000000011111
Q ss_pred HHhh---hccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------------eeec
Q 021103 133 VIAV---SKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------FNST 192 (317)
Q Consensus 133 ~~~~---~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------------lilD 192 (317)
.... +...+++.+...........+.+.++++.+++ ..++++.+|||||+||++|| +++|
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllD 172 (266)
T 4g1u_C 93 YSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLD 172 (266)
T ss_dssp CCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEEC
T ss_pred CCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEe
Confidence 0000 00011111111111222345678889999999 67889999999999999887 5899
Q ss_pred CCCCCCCHHHHHHHHHHh---cc-cC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEY---KI-HN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l---~~-~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+ .. .+ ++|++|||.+. ..+| ..++++++..+.
T Consensus 173 EPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~----------d~v~vl~~G~i~ 227 (266)
T 4g1u_C 173 EPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYA----------DRIMLLAQGKLV 227 (266)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHC----------SEEEEEETTEEE
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhC----------CEEEEEECCEEE
Confidence 999999999866555544 33 34 89999999554 3344 446777766544
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-27 Score=209.48 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++.. . ........++.+|
T Consensus 32 ~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~--~---~~~~~~~i~~v~q 95 (256)
T 1vpl_A 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVVE--E---PHEVRKLISYLPE 95 (256)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTT--C---HHHHHTTEEEECT
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEECCEECCc--c---HHHHhhcEEEEcC
Confidence 578899999999999999999999999999999988 89999999976410 0 0000111111111
Q ss_pred HHhhhc---cCcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSK---SSDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~---~~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+. ..+++.+.. .........+.+.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 96 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts 175 (256)
T 1vpl_A 96 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 175 (256)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 111111 011111111 011112223567888999999 57889999999999999998 89999999
Q ss_pred CCCHHHHHHHHHH---hcccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 197 HVDEKLCYQILHE---YKIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+||+.....+++. +...+ ++|++|||.+. ..+| ..++++++.-+.
T Consensus 176 ~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~----------d~v~~l~~G~i~ 225 (256)
T 1vpl_A 176 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC----------DRIALIHNGTIV 225 (256)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTC----------SEEEEEETTEEE
T ss_pred ccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHC----------CEEEEEECCEEE
Confidence 9999986555444 43334 89999999543 3333 346666665443
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-27 Score=210.73 Aligned_cols=158 Identities=14% Similarity=0.062 Sum_probs=110.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++..|+++||+||||||||||+++|+|...| .+|.|.++|.++. ..+. .......++.
T Consensus 38 ~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~~~~~~~----~~~~~~i~~v 102 (279)
T 2ihy_A 38 KKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPA-----------TSGTVNLFGKMPGKVGYSA----ETVRQHIGFV 102 (279)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTBCCC---CCH----HHHHTTEEEE
T ss_pred EeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCeEEEECCEEcccccCCH----HHHcCcEEEE
Confidence 578899999999999999999999999999999988 8999999997653 1110 0011223333
Q ss_pred HHHHhh-h----ccCcEEEEEec------CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------
Q 021103 131 RQVIAV-S----KSSDIVLMVLD------ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 131 ~~~~~~-~----~~~d~i~~v~~------~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
+|.... + ...+++.+... ........+.+.++|+.+++ ..++++.+|||||+||++||
T Consensus 103 ~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 182 (279)
T 2ihy_A 103 SHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQV 182 (279)
T ss_dssp CHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSE
T ss_pred EcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCE
Confidence 333221 1 11222211100 00112234567889999999 67889999999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cc-cCcE--EEecCCCCh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KI-HNAE--VLFREDATV 225 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~-~~~~--i~~shd~~~ 225 (317)
+++||||++||+.....+++.+ .. ..++ |++|||...
T Consensus 183 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~ 225 (279)
T 2ihy_A 183 LILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225 (279)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGG
T ss_pred EEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHH
Confidence 9999999999999866655544 33 3489 999999543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-26 Score=207.60 Aligned_cols=171 Identities=19% Similarity=0.184 Sum_probs=115.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|.++... ......++++|
T Consensus 24 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~~~~~-------~~~~~i~~v~q 85 (266)
T 2yz2_A 24 ENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEP-----------TSGDVLYDGERKKGY-------EIRRNIGIAFQ 85 (266)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCHH-------HHGGGEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CCcEEEECCEECchH-------HhhhhEEEEec
Confidence 468899999999999999999999999999999988 899999999764210 00011111111
Q ss_pred HH-hhh---ccCcEEEEEecC-CCchhhHHHHHHHHHHcccc----ccccCCcccccceeeeeeE---------eeecCC
Q 021103 133 VI-AVS---KSSDIVLMVLDA-SKSEGHRQILTKELEAVGLR----LNKRPPQIYFKKKKTGGIS---------FNSTLP 194 (317)
Q Consensus 133 ~~-~~~---~~~d~i~~v~~~-~~~~~~~~~~~~~L~~~~l~----~~~~~~~LS~g~~qr~~ia---------lilDEP 194 (317)
.. ..+ ...+++.+.... .......+++.++++.+++. .++++.+|||||+||++|| +++|||
T Consensus 86 ~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEP 165 (266)
T 2yz2_A 86 YPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEP 165 (266)
T ss_dssp SGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred cchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 10 000 011111111100 11112245678889999885 6788999999999999998 899999
Q ss_pred CCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCC
Q 021103 195 LTHVDEKLCYQILHEY---KIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 195 t~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|++||+.....+++.+ ...+ ++|++|||... ..++ ..++++++..+.
T Consensus 166 ts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~----------d~v~~l~~G~i~ 217 (266)
T 2yz2_A 166 LVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHV----------DRVVVLEKGKKV 217 (266)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGC----------SEEEEEETTEEE
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEE
Confidence 9999999866555544 3334 99999999654 3334 345666665544
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-27 Score=205.91 Aligned_cols=158 Identities=17% Similarity=0.158 Sum_probs=106.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++. + + ....++.+|
T Consensus 26 ~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~~~--~---~----~~~i~~v~q 85 (214)
T 1sgw_A 26 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPIT--K---V----KGKIFFLPE 85 (214)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGG--G---G----GGGEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCeEEEECCEEhh--h---h----cCcEEEEeC
Confidence 467889999999999999999999999999999988 8999999997641 0 0 000111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+ ...+++.+...........+.+.++++.+++ . ++++.+|||||+||+++| +++||||++|
T Consensus 86 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~L 164 (214)
T 1sgw_A 86 EIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164 (214)
T ss_dssp SCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred CCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCC
Confidence 10000 0011111100000001114567888999998 5 888999999999999998 9999999999
Q ss_pred CHHHHHHHHHH---hcc-cCcEEEecCCCC-hhhHHHH
Q 021103 199 DEKLCYQILHE---YKI-HNAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 199 D~~~~~~~l~~---l~~-~~~~i~~shd~~-~~~~~~~ 231 (317)
|+.....+++. +.. ..++|++|||.. +..++++
T Consensus 165 D~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~ 202 (214)
T 1sgw_A 165 DEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNEN 202 (214)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCE
Confidence 99875555444 432 348999999954 3444443
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.92 E-value=9.6e-27 Score=205.53 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=104.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| . |.|.++|.++...+.. ......++.+|
T Consensus 17 ~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p-----------~-G~i~~~g~~~~~~~~~----~~~~~i~~v~q 80 (249)
T 2qi9_C 17 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG-----------K-GSIQFAGQPLEAWSAT----KLALHRAYLSQ 80 (249)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------E-EEEEETTEEGGGSCHH----HHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------C-eEEEECCEECCcCCHH----HHhceEEEECC
Confidence 478899999999999999999999999999999988 8 9999999764210000 00000111111
Q ss_pred HHhhh---ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------eee
Q 021103 133 VIAVS---KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS----------------FNS 191 (317)
Q Consensus 133 ~~~~~---~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia----------------lil 191 (317)
....+ ...+++.+... ... ..+.+.++++.+++ ..++++.+|||||+||++|| +++
T Consensus 81 ~~~~~~~~tv~e~l~~~~~-~~~--~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 81 QQTPPFATPVWHYLTLHQH-DKT--RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp CCCCCTTCBHHHHHHTTCS-STT--CHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred CCccCCCCcHHHHHHHhhc-cCC--cHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 10000 00111111000 000 14567889999999 67889999999999999987 789
Q ss_pred cCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~ 225 (317)
||||++||+.....+++.+ ...+ ++|++|||...
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~ 195 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNH 195 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 9999999999866555544 3334 99999999554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-26 Score=201.18 Aligned_cols=170 Identities=11% Similarity=0.059 Sum_probs=108.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++...+. ...+...++++|
T Consensus 26 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q 90 (247)
T 2ff7_A 26 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADP----NWLRRQVGVVLQ 90 (247)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCH----HHHHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCH----HHHHhcEEEEeC
Confidence 578899999999999999999999999999999988 89999999976421000 000001111111
Q ss_pred HHhhh--ccCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVS--KSSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+ ...+++.+.. .....+.+.+.++.+++ . .++++.+|||||+||++||
T Consensus 91 ~~~l~~~tv~enl~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~l 166 (247)
T 2ff7_A 91 DNVLLNRSIIDNISLAN----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 166 (247)
T ss_dssp SCCCTTSBHHHHHTTTC----TTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred CCccccccHHHHHhccC----CCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 0011111110 01112345556666665 2 2345689999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+. ...++|++|||......+ ..++++++.-+.
T Consensus 167 llLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~----------d~v~~l~~G~i~ 222 (247)
T 2ff7_A 167 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNA----------DRIIVMEKGKIV 222 (247)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTS----------SEEEEEETTEEE
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhC----------CEEEEEECCEEE
Confidence 89999999999998665554443 334999999996644323 346677665443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-26 Score=201.18 Aligned_cols=158 Identities=17% Similarity=0.131 Sum_probs=107.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.+. ..+.++.. +.+... . .+.
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~-~~i~~v~q~~~~~~~----~-tv~ 84 (253)
T 2nq2_C 22 QQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP-----------IQGKIEVY-QSIGFVPQFFSSPFA----Y-SVL 84 (253)
T ss_dssp EEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC-----------SEEEEEEC-SCEEEECSCCCCSSC----C-BHH
T ss_pred EEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEEe-ccEEEEcCCCccCCC----C-CHH
Confidence 578899999999999999999999999999999988 88999853 23444321 221110 0 011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
+......... ............+.+.++++.+++ ..++++.+|||||+||++|| +++||||++||+
T Consensus 85 enl~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~ 161 (253)
T 2nq2_C 85 DIVLMGRSTH---INTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161 (253)
T ss_dssp HHHHGGGGGG---SCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH
T ss_pred HHHHHhhhhh---cccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 2111110000 000000122234567889999999 57889999999999999998 999999999999
Q ss_pred HHHHHHHHHh---ccc-C-cEEEecCCCCh-hhHHH
Q 021103 201 KLCYQILHEY---KIH-N-AEVLFREDATV-DDLID 230 (317)
Q Consensus 201 ~~~~~~l~~l---~~~-~-~~i~~shd~~~-~~~~~ 230 (317)
.....+++.+ ... + ++|++|||... .+++|
T Consensus 162 ~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 197 (253)
T 2nq2_C 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIAN 197 (253)
T ss_dssp HHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 9866555444 333 4 89999999553 34443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-26 Score=202.72 Aligned_cols=171 Identities=15% Similarity=0.090 Sum_probs=112.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|.++...+... .+...++.+|
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~q 83 (243)
T 1mv5_A 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLEN----WRSQIGFVSQ 83 (243)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCSC----CTTTCCEECC
T ss_pred EEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HHhhEEEEcC
Confidence 578899999999999999999999999999999988 8999999997652211111 1112222222
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cc-----------cccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-----------~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+... .....+.+.+.++.+++ .. ++++.+|||||+||++||
T Consensus 84 ~~~l~~~tv~enl~~~~~---~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 84 DSAIMAGTIRENLTYGLE---GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp SSCCCCEEHHHHTTSCTT---SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccccccHHHHHhhhcc---CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 211111 1111111101 11123346667777776 22 345679999999999998
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.. +.+++..+....++|++|||...... ...++++++.-+.
T Consensus 161 llLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~----------~d~v~~l~~G~i~ 216 (243)
T 1mv5_A 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD----------ADKIYFIEKGQIT 216 (243)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH----------CSEEEEEETTEEC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHh----------CCEEEEEECCEEE
Confidence 89999999999886 45555555533499999999654332 2346777765544
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=199.26 Aligned_cols=160 Identities=18% Similarity=0.082 Sum_probs=101.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc--CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT--HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~--~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++++..|++++|+||||||||||+++|+|. ..| .+|.|.++|.++...+. ........++.
T Consensus 20 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~~~~~~~---~~~~~~~i~~v 85 (250)
T 2d2e_A 20 KGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV-----------ERGEILLDGENILELSP---DERARKGLFLA 85 (250)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEECTTSCH---HHHHHTTBCCC
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CceEEEECCEECCCCCH---HHHHhCcEEEe
Confidence 468899999999999999999999999999998 555 89999999976521100 00000001111
Q ss_pred HHHHhhhcc---CcEEEEEe---cC--CCchhhHHHHHHHHHHccc---cccccCCc-ccccceeeeeeE---------e
Q 021103 131 RQVIAVSKS---SDIVLMVL---DA--SKSEGHRQILTKELEAVGL---RLNKRPPQ-IYFKKKKTGGIS---------F 189 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~---~~--~~~~~~~~~~~~~L~~~~l---~~~~~~~~-LS~g~~qr~~ia---------l 189 (317)
+|....+.. .+++.+.. .. .......+.+.++|+.+++ ..++++.+ |||||+||++|| +
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~ll 165 (250)
T 2d2e_A 86 FQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYA 165 (250)
T ss_dssp CCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEE
T ss_pred ccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEE
Confidence 111100000 01111100 00 0111223467788999998 35778888 999999999998 9
Q ss_pred eecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChh
Q 021103 190 NSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVD 226 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~ 226 (317)
++||||++||+.....+++.+ ...+ ++|++|||....
T Consensus 166 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 166 VLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp EEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999999999999866555544 3334 899999996543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-26 Score=201.03 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=109.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~ 131 (317)
.++++.+. |++++|+||||||||||+++|+|.. | .+|.|.++|.++.. . .. ....+ +.+
T Consensus 22 ~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p-----------~~G~I~~~g~~~~~--~----~~-~~~i~~~v~ 81 (263)
T 2pjz_A 22 ENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P-----------YSGNIFINGMEVRK--I----RN-YIRYSTNLP 81 (263)
T ss_dssp EEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C-----------CEEEEEETTEEGGG--C----SC-CTTEEECCG
T ss_pred EeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C-----------CCcEEEECCEECcc--h----HH-hhheEEEeC
Confidence 46789999 9999999999999999999999999 8 89999999976421 0 00 11222 222
Q ss_pred HHHhh-hccCcEEEEEecCCCchhhHHHHHHHHHHcccc---ccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 132 QVIAV-SKSSDIVLMVLDASKSEGHRQILTKELEAVGLR---LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 132 ~~~~~-~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~---~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
|.... +...+++.+..... ....+.+.++++.+++. .++++.+|||||+||+++| +++||||++|
T Consensus 82 Q~~~l~~tv~enl~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 82 EAYEIGVTVNDIVYLYEELK--GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp GGSCTTSBHHHHHHHHHHHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred CCCccCCcHHHHHHHhhhhc--chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 22111 01111111111101 11234678889999884 6888999999999999998 9999999999
Q ss_pred CHHHHHHHHHHhccc-CcEEEecCCCCh-hhHHH
Q 021103 199 DEKLCYQILHEYKIH-NAEVLFREDATV-DDLID 230 (317)
Q Consensus 199 D~~~~~~~l~~l~~~-~~~i~~shd~~~-~~~~~ 230 (317)
|+.....+++.+... .++|++|||... ..++|
T Consensus 160 D~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp CHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred CHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 999877776666532 299999999543 44444
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-26 Score=205.03 Aligned_cols=174 Identities=12% Similarity=0.084 Sum_probs=110.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|.++...+.. .....+++++|
T Consensus 36 ~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~~i~~~~~~----~~~~~i~~v~Q 100 (271)
T 2ixe_A 36 QGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP-----------TGGKVLLDGEPLVQYDHH----YLHTQVAAVGQ 100 (271)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHH----HHHHHEEEECS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEcccCCHH----HHhccEEEEec
Confidence 478899999999999999999999999999999988 899999999765211100 00000111111
Q ss_pred HHhhh--ccCcEEEEEecCCCc-hh-----hHHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVS--KSSDIVLMVLDASKS-EG-----HRQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~--~~~d~i~~v~~~~~~-~~-----~~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+ ...+++.+....... .. ....+.++++.+ ++ ..++++.+|||||+||++|| +++
T Consensus 101 ~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllL 180 (271)
T 2ixe_A 101 EPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLIL 180 (271)
T ss_dssp SCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11000 001111111111111 11 111234566666 55 56788999999999999998 899
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
||||++||+.....+++.+. . ..++|++|||...... ...++++++.-+.
T Consensus 181 DEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~----------~d~v~~l~~G~i~ 235 (271)
T 2ixe_A 181 DNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAER----------AHHILFLKEGSVC 235 (271)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTT----------CSEEEEEETTEEE
T ss_pred ECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEEE
Confidence 99999999998666655543 2 2389999999654332 2346677665443
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-25 Score=201.09 Aligned_cols=160 Identities=14% Similarity=0.090 Sum_probs=103.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.++++.+..|++++|+||||||||||+++|+|.. .| .+|.|.++|.++...+.... .....++.
T Consensus 37 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p-----------~~G~I~~~g~~i~~~~~~~~---~~~~i~~v 102 (267)
T 2zu0_C 37 RGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEV-----------TGGTVEFKGKDLLALSPEDR---AGEGIFMA 102 (267)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEE-----------EEEEEEETTEEGGGSCHHHH---HHHTEEEE
T ss_pred EeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-----------CCeEEEECCEECCcCCHHHH---hhCCEEEE
Confidence 5788999999999999999999999999999984 34 89999999976421100000 00000011
Q ss_pred HHHHhhhcc---CcEEEEEe-------c--CCCchhhHHHHHHHHHHccc---cccccCC-cccccceeeeeeE------
Q 021103 131 RQVIAVSKS---SDIVLMVL-------D--ASKSEGHRQILTKELEAVGL---RLNKRPP-QIYFKKKKTGGIS------ 188 (317)
Q Consensus 131 ~~~~~~~~~---~d~i~~v~-------~--~~~~~~~~~~~~~~L~~~~l---~~~~~~~-~LS~g~~qr~~ia------ 188 (317)
+|....+.. .+++.+.. . ........+.+.++|+.+++ ..++++. +|||||+||++||
T Consensus 103 ~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~ 182 (267)
T 2zu0_C 103 FQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLE 182 (267)
T ss_dssp CSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHC
T ss_pred ccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhC
Confidence 110000000 00000000 0 00111223567888999998 2466676 5999999999998
Q ss_pred ---eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChh
Q 021103 189 ---FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVD 226 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~ 226 (317)
+++||||++||+.....+++.+. ..+ ++|++|||....
T Consensus 183 p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~ 227 (267)
T 2zu0_C 183 PELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRIL 227 (267)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGG
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHH
Confidence 99999999999998766665553 333 899999996543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-26 Score=205.64 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=112.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++..++.. ..+..+++++|
T Consensus 71 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~G~~i~~~~~~----~~r~~i~~v~Q 135 (306)
T 3nh6_A 71 QDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDI-----------SSGCIRIDGQDISQVTQA----SLRSHIGVVPQ 135 (306)
T ss_dssp EEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCC-----------SEEEEEETTEETTSBCHH----HHHHTEEEECS
T ss_pred eeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC-----------CCcEEEECCEEcccCCHH----HHhcceEEEec
Confidence 478899999999999999999999999999999988 899999999875322110 00111222222
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .......+.+.++.+++ .+..+..+|||||+||++||
T Consensus 136 ~~~lf~~Tv~eNi~~~~----~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 136 DTVLFNDTIADNIRYGR----VTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp SCCCCSEEHHHHHHTTS----TTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCcccHHHHHHhhc----ccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 111110 011111111 01112233344444433 34556689999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+.....+++.+. ...|+|++||+...... ...|+|+++.-++..+
T Consensus 212 LlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~----------aD~i~vl~~G~iv~~G 270 (306)
T 3nh6_A 212 ILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN----------ADQILVIKDGCIVERG 270 (306)
T ss_dssp EEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT----------CSEEEEEETTEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc----------CCEEEEEECCEEEEEC
Confidence 99999999999998666655543 44599999999654332 3567888877665433
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=6.9e-24 Score=199.28 Aligned_cols=244 Identities=22% Similarity=0.324 Sum_probs=135.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---------------------CC---eeEEEecCCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---------------------ND---TKIQLLDLPGI 119 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---------------------~g---~~i~~~d~~g~ 119 (317)
+++|+|.||+|||||+|+|+|....+++|||||+++..|.+.+ ++ .++.++||||+
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~ 81 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCc
Confidence 6899999999999999999998866899999999999997643 33 57899999998
Q ss_pred cccccCCchhHHHHHhhhccCcEEEEEecCCCc-------------hhhHHHHHHHHHHccc-cccccCCcccccceeee
Q 021103 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS-------------EGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTG 185 (317)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~-------------~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~ 185 (317)
.+....+.+...+++..++.+|.+++++|+... ..+.+.+...|....+ .+++++..+... ..+.
T Consensus 82 ~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~k~-~~~~ 160 (397)
T 1wxq_A 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKR-IKLQ 160 (397)
T ss_dssp -------------CCCSSTTCSEEEEEEETTCCBCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHHST-TTSS
T ss_pred ccchhhhhhHHHHHHHHHhcCCEEEEEEecccccCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH-Hhhc
Confidence 764433334445555677889999999998642 2344455555554422 122222222100 0000
Q ss_pred eeEe--eecCCC--CCCCHHHHHHHHHHhcccCcEEEecCCCChhh---HHHHHhcccceeeeeEEEecccCCChhhHHH
Q 021103 186 GISF--NSTLPL--THVDEKLCYQILHEYKIHNAEVLFREDATVDD---LIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK 258 (317)
Q Consensus 186 ~ial--ilDEPt--~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~---~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~ 258 (317)
...+ -+.+-+ -+.+.+.+..+++.+..... ..+++.++ +.+... ...+|+++|+||+|+...++++.
T Consensus 161 ~~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~----~~~~~~~e~~~l~~~~~--~~~kP~i~v~NK~D~~~~~~l~~ 234 (397)
T 1wxq_A 161 KIKLESAIAEHLSGIGVNENDVWEAMHKLNLPED----PTKWSQDDLLAFASEIR--RVNKPMVIAANKADAASDEQIKR 234 (397)
T ss_dssp CCCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSC----GGGCCHHHHHHHHHHHH--HHHSCEEEEEECGGGSCHHHHHH
T ss_pred CccHHHHHHHHhcccCCCHHHHHHHHHHhccCCc----cccCCHHHHHHHHHhhh--ccCCCEEEEEeCccccchHHHHH
Confidence 0000 000000 13556677788887765443 11333322 222222 12489999999999986555554
Q ss_pred Hhc-----CCCeEEEeccccccHHHH------------------------------------------------H-HHHH
Q 021103 259 LAR-----QPNSVVISCNLKLNLDRL------------------------------------------------L-ARMW 284 (317)
Q Consensus 259 l~~-----~~~~v~iSa~~~~~i~~l------------------------------------------------~-~~i~ 284 (317)
+.+ ...++++||..+.++++| . +.++
T Consensus 235 l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g~~g~~~~i~~~~~ 314 (397)
T 1wxq_A 235 LVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFGSTGVQEVINRVVF 314 (397)
T ss_dssp HHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSSSCSHHHHHHHHHH
T ss_pred HHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 432 235899999998887542 1 3568
Q ss_pred HHhCeeEEEec--------CCCCCCCCCCCEEEeccceee
Q 021103 285 EEMGLVRVYTK--------PQGQQPDFTEPVVLSVVCYIS 316 (317)
Q Consensus 285 ~~l~~~~~~~~--------~~~~~~~~~~p~~~~~~~~v~ 316 (317)
+.|+.+++||- ++|. ...+|+++++|+||.
T Consensus 315 ~~L~li~vft~~~~~~~~~~~g~--~~~~~~~l~~G~t~~ 352 (397)
T 1wxq_A 315 DLLKLIPVYPVHDENKLTDQFGN--VLPHVFLMKKGSTPR 352 (397)
T ss_dssp TTSCEEEEEEESCC-----CCSC--SSCCCEEEETTCCHH
T ss_pred HHhCCeEEEeecccccccCCcCc--ccceeEEeCCCCCHH
Confidence 89999999993 3332 355799999999973
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-25 Score=208.88 Aligned_cols=174 Identities=19% Similarity=0.147 Sum_probs=119.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|||||||||||++|+|+.. .+|.|.++|.++...+. ...+...++++|
T Consensus 38 ~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------------~~G~I~i~G~~i~~~~~----~~~rr~ig~v~Q 101 (390)
T 3gd7_A 38 ENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------------TEGEIQIDGVSWDSITL----EQWRKAFGVIPQ 101 (390)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------------EEEEEEESSCBTTSSCH----HHHHHTEEEESC
T ss_pred eceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------------CCeEEEECCEECCcCCh----HHHhCCEEEEcC
Confidence 57889999999999999999999999999999863 57999999976521110 000112222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCc-----------ccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQ-----------IYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~-----------LS~g~~qr~~ia--------- 188 (317)
....+.. .+++. .. .....+.+.+.++.+++ ..++++.. |||||+||++||
T Consensus 102 ~~~lf~~tv~enl~----~~-~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~l 176 (390)
T 3gd7_A 102 KVFIFSGTFRKNLD----PN-AAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 176 (390)
T ss_dssp CCCCCSEEHHHHHC----TT-CCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred CcccCccCHHHHhh----hc-cccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCE
Confidence 2211110 01110 01 11223567788999998 67778877 999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcc---cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKI---HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~---~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+.. ..++|++|||.+.... ...++|+++.-+...+..+
T Consensus 177 LLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~----------aDri~vl~~G~i~~~g~~~ 238 (390)
T 3gd7_A 177 LLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLE----------CDQFLVIEENKVRQYDSIL 238 (390)
T ss_dssp EEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTT----------CSEEEEEETTEEEEESSHH
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHh----------CCEEEEEECCEEEEECCHH
Confidence 899999999999987777666653 3499999999654332 3568888887766443333
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.5e-25 Score=194.43 Aligned_cols=169 Identities=13% Similarity=0.094 Sum_probs=106.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...+ +|.|.++|.++...+. ...+...++.+|
T Consensus 37 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~------------~G~I~i~g~~i~~~~~----~~~~~~i~~v~Q 100 (260)
T 2ghi_A 37 KSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA------------EGDIKIGGKNVNKYNR----NSIRSIIGIVPQ 100 (260)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC------------EEEEEETTEEGGGBCH----HHHHTTEEEECS
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC------------CeEEEECCEEhhhcCH----HHHhccEEEEcC
Confidence 478899999999999999999999999999999754 6999999976521110 000111111111
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+.. .. ...+.+.+.++.+++ . .++++.+|||||+||++||
T Consensus 101 ~~~l~~~tv~enl~~~~--~~--~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 176 (260)
T 2ghi_A 101 DTILFNETIKYNILYGK--LD--ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKI 176 (260)
T ss_dssp SCCCCSEEHHHHHHTTC--TT--CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred CCcccccCHHHHHhccC--CC--CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCE
Confidence 111110 011111100 00 112344556666654 1 2456789999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+++.+ ....++|++|||...... ...++++++.-+.
T Consensus 177 llLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~----------~d~i~~l~~G~i~ 232 (260)
T 2ghi_A 177 VIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISS----------AESIILLNKGKIV 232 (260)
T ss_dssp EEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTT----------CSEEEEEETTEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh----------CCEEEEEECCEEE
Confidence 9999999999999866554444 333499999999654332 3346667665443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=183.95 Aligned_cols=149 Identities=15% Similarity=0.207 Sum_probs=100.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|++++|+||||||||||+++|+|...| .+|.|.++|. +.++....... . .-+.+
T Consensus 22 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~-i~~v~Q~~~~~----~-~tv~e 84 (237)
T 2cbz_A 22 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK-----------VEGHVAIKGS-VAYVPQQAWIQ----N-DSLRE 84 (237)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEE-----------EEEEEEECSC-EEEECSSCCCC----S-EEHHH
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCceEEECCE-EEEEcCCCcCC----C-cCHHH
Confidence 578899999999999999999999999999999987 8999999883 44432111100 0 00112
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHH---HHHccc-------cccccCCcccccceeeeeeE---------eeecC
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKE---LEAVGL-------RLNKRPPQIYFKKKKTGGIS---------FNSTL 193 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~---L~~~~l-------~~~~~~~~LS~g~~qr~~ia---------lilDE 193 (317)
.+.... ... . .....+.+. ++.++. .+++++.+|||||+||+++| +++||
T Consensus 85 nl~~~~---------~~~-~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDE 153 (237)
T 2cbz_A 85 NILFGC---------QLE-E-PYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDD 153 (237)
T ss_dssp HHHTTS---------CCC-T-THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEES
T ss_pred HhhCcc---------ccC-H-HHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111110 001 1 111112111 222222 24678899999999999998 89999
Q ss_pred CCCCCCHHHHHHHHHHhc------ccCcEEEecCCCChhhHH
Q 021103 194 PLTHVDEKLCYQILHEYK------IHNAEVLFREDATVDDLI 229 (317)
Q Consensus 194 Pt~~LD~~~~~~~l~~l~------~~~~~i~~shd~~~~~~~ 229 (317)
||++||+.....+++.+. ...++|++|||......+
T Consensus 154 Pts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~ 195 (237)
T 2cbz_A 154 PLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQV 195 (237)
T ss_dssp TTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGS
T ss_pred cccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhC
Confidence 999999999888887772 223899999997654433
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-24 Score=198.13 Aligned_cols=230 Identities=15% Similarity=0.183 Sum_probs=152.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEG 122 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~ 122 (317)
.|.+++|+|+||||||||||+|+|... .+++|||||++|+.|.+.+.| ..+.++|+||+...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 478999999999999999999999887 799999999999999999987 46789999999876
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
...+.+...++...++.+|.++++++..... ....++++... +.=..++|||+..+|++.
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~-------------------~i~~v~~~~dP-~~di~ildeel~~~D~~~ 158 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFDDA-------------------EIIHVEGDVDP-IRDLSIIVDELLIKDAEF 158 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCCTT-------------------CSSCCSSSSCH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccccc-------------------eeeeeccccCc-chhhhhchhhhHHHHHHH
Confidence 6555555556777788999999999875310 01111111100 000023455555555554
Q ss_pred HHHHHHH---h-cccCcEEEecCC-CChhhHHHHH------------------------h--cccceeeeeEEEecccCC
Q 021103 203 CYQILHE---Y-KIHNAEVLFRED-ATVDDLIDVI------------------------E--GNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 203 ~~~~l~~---l-~~~~~~i~~shd-~~~~~~~~~~------------------------~--~~~~~~p~i~v~NK~D~~ 251 (317)
+...+.. + ...+..+ ++|+ ....++|+.+ . .....+|+++++|+.|..
T Consensus 159 ~~k~~~~l~~~~~~~g~ti-~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~ 237 (392)
T 1ni3_A 159 VEKHLEGLRKITSRGANTL-EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERD 237 (392)
T ss_dssp HHHHHHHHHHTTCCSSCSS-SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHH
T ss_pred HHHHHHHHHHHHHhcCCcc-ccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchh
Confidence 3332222 2 1111111 1333 1122222221 1 124468999999999732
Q ss_pred ---C-hhhHHHHhc----C---CCeEEEeccc---------------------cccHHHHHHHHHHHhCeeEEEecCCCC
Q 021103 252 ---G-IDDVDKLAR----Q---PNSVVISCNL---------------------KLNLDRLLARMWEEMGLVRVYTKPQGQ 299 (317)
Q Consensus 252 ---~-~~~~~~l~~----~---~~~v~iSa~~---------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~ 299 (317)
. +++++.+.+ . ..++++||.. +.|++++.+..++.|+.+++||..|.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~- 316 (392)
T 1ni3_A 238 FLRQKNKYLPKIKKWIDENSPGDTLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED- 316 (392)
T ss_dssp HTTTCCSSHHHHHHHHHTTSTTCCEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS-
T ss_pred hcccchHHHHHHHHHHHhcCCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC-
Confidence 1 333443322 2 3589999987 68999999999999999999996654
Q ss_pred CCCCCCCEEEecccee
Q 021103 300 QPDFTEPVVLSVVCYI 315 (317)
Q Consensus 300 ~~~~~~p~~~~~~~~v 315 (317)
.-++.++++|+|+
T Consensus 317 ---e~rawti~~G~~a 329 (392)
T 1ni3_A 317 ---EVRSWTIRKGTKA 329 (392)
T ss_dssp ---EEEEEEEETTCBH
T ss_pred ---cceeEEeCCCCcH
Confidence 3479999999985
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-24 Score=188.24 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=104.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. +.++. .+.+... -+.
T Consensus 25 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~g~-i~~v~q~~~~~~~------tv~ 86 (229)
T 2pze_A 25 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-ISFCSQFSWIMPG------TIK 86 (229)
T ss_dssp EEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEECSC-EEEECSSCCCCSB------CHH
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CccEEEECCE-EEEEecCCcccCC------CHH
Confidence 578899999999999999999999999999999988 8999999883 44332 2222110 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+..... .. . .. ....+.++.+++ ...+++.+|||||+||+++| +
T Consensus 87 enl~~~---------~~-~-~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ll 152 (229)
T 2pze_A 87 ENIIFG---------VS-Y-DE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 152 (229)
T ss_dssp HHHHTT---------SC-C-CH---HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHhhcc---------CC-c-Ch---HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 211110 00 0 00 112222333332 12335689999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
++||||++||+.....+++.+ . ...++|++|||......+ ..++++++..+.
T Consensus 153 lLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~----------d~v~~l~~G~i~ 208 (229)
T 2pze_A 153 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA----------DKILILHEGSSY 208 (229)
T ss_dssp EEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHC----------SEEEEEETTEEE
T ss_pred EEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhC----------CEEEEEECCEEE
Confidence 999999999999988888763 3 223899999996543322 346666655443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.8e-24 Score=209.58 Aligned_cols=172 Identities=12% Similarity=0.091 Sum_probs=115.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~~~~i~~v~Q 424 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV-----------DSGSICLDGHDVRDYKLTN----LRRHFALVSQ 424 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECCEEhhhCCHHH----HhcCeEEEcC
Confidence 478899999999999999999999999999999988 8999999998764322111 1112222333
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--c-----------ccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--R-----------LNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~-----------~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+... +....+.+.+.++.+++ . ...+..+|||||+||+++|
T Consensus 425 ~~~l~~~tv~eni~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~i 501 (582)
T 3b5x_A 425 NVHLFNDTIANNIAYAAE---GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPV 501 (582)
T ss_pred CCccccccHHHHHhccCC---CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 222111 1222222110 11123456667777665 2 2334579999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+.....+.+.+. ...++|++||+....+. ...++++++.-+..
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~~ 558 (582)
T 3b5x_A 502 LILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQ----------ADEILVVDEGEIIE 558 (582)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh----------CCEEEEEECCEEEE
Confidence 89999999999998666555543 33499999999654333 34577777665543
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=189.84 Aligned_cols=155 Identities=14% Similarity=0.132 Sum_probs=102.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|++++|+||||||||||+++|+|...| .+|.|.++|. +.++.. +.++. . -+.
T Consensus 55 ~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~~g~-i~~v~Q~~~l~~----~--tv~ 116 (290)
T 2bbs_A 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP-----------SEGKIKHSGR-ISFCSQNSWIMP----G--TIK 116 (290)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCE-----------EEEEEECCSC-EEEECSSCCCCS----S--BHH
T ss_pred EeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC-----------CCcEEEECCE-EEEEeCCCccCc----c--cHH
Confidence 578899999999999999999999999999999988 8999999883 444321 21111 0 111
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+... .. .... ....+.++.+++ .+..++.+|||||+||++|| +
T Consensus 117 enl~---~~---------~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ll 181 (290)
T 2bbs_A 117 ENII---GV---------SYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLY 181 (290)
T ss_dssp HHHH---TT---------CCCH---HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHhh---Cc---------ccch---HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEE
Confidence 2111 00 0000 112223333333 12334579999999999998 8
Q ss_pred eecCCCCCCCHHHHHHHHHHh-c---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccC
Q 021103 190 NSTLPLTHVDEKLCYQILHEY-K---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDV 250 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l-~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~ 250 (317)
++||||++||+.....+++.+ . ...++|++|||......+ ..++++++..+
T Consensus 182 lLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~----------d~i~~l~~G~i 236 (290)
T 2bbs_A 182 LLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKA----------DKILILHEGSS 236 (290)
T ss_dssp EEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHS----------SEEEEEETTEE
T ss_pred EEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcC----------CEEEEEECCeE
Confidence 999999999999988888753 2 223999999996543323 34566665544
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-24 Score=209.53 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=111.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++.-.+.. ..+...+++.|
T Consensus 360 ~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~----~~~~~i~~v~Q 424 (582)
T 3b60_A 360 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLA----SLRNQVALVSQ 424 (582)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHH----HHHHTEEEECS
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCC-----------CCCeEEECCEEccccCHH----HHHhhCeEEcc
Confidence 467899999999999999999999999999999988 899999999765211100 00011111112
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+. ..+....+.+.+.++.+++ ....+..+|||||+||+++|
T Consensus 425 ~~~l~~~tv~eni~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~i 501 (582)
T 3b60_A 425 NVHLFNDTVANNIAYA---RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 501 (582)
T ss_dssp SCCCCSSBHHHHHHTT---TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCcCCCCCHHHHHhcc---CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 111111 01111111 0011123446666666655 23345689999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
+++||||++||+.....+.+.+. ...++|++||+....+. ...++++++.-+.
T Consensus 502 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~----------~d~i~~l~~G~i~ 557 (582)
T 3b60_A 502 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ----------ADEIVVVEDGIIV 557 (582)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT----------CSEEEEEETTEEE
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHh----------CCEEEEEECCEEE
Confidence 99999999999998666555443 34499999999654332 3457778766554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=185.97 Aligned_cols=235 Identities=20% Similarity=0.272 Sum_probs=143.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-----------------eeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~~ 124 (317)
+.+++|+|.||||||||+|+|++....+++|||||++|..|.+.+.+ ..+.++||||+.+...
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 45899999999999999999999887789999999999999999876 4689999999976544
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCccc----ccceeeeee
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIY----FKKKKTGGI 187 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS----~g~~qr~~i 187 (317)
.+.+...+++..++.+|.+++++|... +..+.+.+...|....+ .+.++...+. +|.+....
T Consensus 82 ~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~- 160 (363)
T 1jal_A 82 KGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKF- 160 (363)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHH-
T ss_pred ccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHH-
Confidence 333444566667889999999998764 22233344444433322 1111111111 11100000
Q ss_pred EeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccCC--ChhhHHHHhc--
Q 021103 188 SFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDVI--GIDDVDKLAR-- 261 (317)
Q Consensus 188 alilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~~--~~~~~~~l~~-- 261 (317)
-.+....+.+.+.....+ -+-+++-++ ...+.. ....+|+++|.|+.|.. .+...+.+..
T Consensus 161 -----------~~~~l~~~~~~L~~~~~~--~~~~~~~~e-~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~ 226 (363)
T 1jal_A 161 -----------ELSVMEKILPVLENAGMI--RSVGLDKEE-LQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIA 226 (363)
T ss_dssp -----------HHHHHHHHHHHHHTTCCG--GGSCCCHHH-HHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHhcCCCc--cccCCCHHH-HHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHH
Confidence 001122222222221110 001222222 122222 23469999999999864 2333333322
Q ss_pred ---CCCeEEEeccc----------------------cccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecccee
Q 021103 262 ---QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVVCYI 315 (317)
Q Consensus 262 ---~~~~v~iSa~~----------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~~~v 315 (317)
...++++||.. +.|+++|.+.+++.|+.+++||..| +..+|.++++|+|+
T Consensus 227 ~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~----~e~raw~i~~G~ta 301 (363)
T 1jal_A 227 AKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGV----KEVRAWTVSVGATA 301 (363)
T ss_dssp HHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECS----SEEEEEEEETTCBH
T ss_pred HHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCC----CCcceeEecCCCcH
Confidence 23578888654 4799999999999999999999554 35689999999996
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-23 Score=207.03 Aligned_cols=176 Identities=12% Similarity=0.086 Sum_probs=113.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+.+||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...++..|
T Consensus 358 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~~~~~~~~~----~r~~i~~v~Q 422 (578)
T 4a82_A 358 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGS----LRNQIGLVQQ 422 (578)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHTEEEECS
T ss_pred eeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCcEEEECCEEhhhCCHHH----HhhheEEEeC
Confidence 477899999999999999999999999999999988 8999999998753211000 0011111112
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+. . +....+.+.+.++..++ ....+..+||||||||+++|
T Consensus 423 ~~~l~~~tv~eni~~~---~-~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~i 498 (578)
T 4a82_A 423 DNILFSDTVKENILLG---R-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 498 (578)
T ss_dssp SCCCCSSBHHHHHGGG---C-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCcccHHHHHhcC---C-CCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 1111110 1111111 1 11112334445544443 23345578999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+++||||++||+.....+.+.+ ....|+|++||+...... ...++++++.-+...+..+
T Consensus 499 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~~~g~~~ 560 (578)
T 4a82_A 499 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH----------ADKIVVIENGHIVETGTHR 560 (578)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT----------CSEEEEEETTEEEEEECHH
T ss_pred EEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHH
Confidence 9999999999998765555444 344599999999654332 4567888877665443333
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-23 Score=207.00 Aligned_cols=178 Identities=12% Similarity=0.085 Sum_probs=113.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++++++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 372 ~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p-----------~~G~i~~~g~~i~~~~~~~----~r~~i~~v~Q 436 (598)
T 3qf4_B 372 KDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDV-----------DRGQILVDGIDIRKIKRSS----LRSSIGIVLQ 436 (598)
T ss_dssp CSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHHEEEECT
T ss_pred cceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCeEEEECCEEhhhCCHHH----HHhceEEEeC
Confidence 578999999999999999999999999999999988 8999999998753211000 0011111112
Q ss_pred HHhhhc--cCcEEEEEecCCCchhhHHHHHHHHHHccc--cc-----------cccCCcccccceeeeeeE---------
Q 021103 133 VIAVSK--SSDIVLMVLDASKSEGHRQILTKELEAVGL--RL-----------NKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~--~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~-----------~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+. ..+++.+. . +....+.+.+.++..++ .. .....+|||||+||+++|
T Consensus 437 ~~~lf~~tv~eni~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 437 DTILFSTTVKENLKYG---N-PGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp TCCCCSSBHHHHHHSS---S-TTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCccccccHHHHHhcC---C-CCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 111110 01111111 0 11111234445544444 12 223368999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.....+.+.+. ...|+|++||+...... ...++++++.-+...+..+++
T Consensus 513 lllDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~----------~d~i~~l~~G~i~~~g~~~~l 576 (598)
T 3qf4_B 513 LILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN----------ADLIIVLRDGEIVEMGKHDEL 576 (598)
T ss_dssp EEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH----------CSEEEEECSSSEEECSCHHHH
T ss_pred EEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHHHH
Confidence 89999999999988665555443 44599999999775443 345788887766544433333
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-23 Score=201.13 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=103.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
.+..|+++||+||||||||||+++|+|...| .+|.|.+++..+.++...-. ... ...+.+.....
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-----------~~G~i~~~~~~i~~~~q~~~-~~~---~~tv~~~l~~~ 354 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEITA-----------DEGSVTPEKQILSYKPQRIF-PNY---DGTVQQYLENA 354 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SBCCEESSCCCEEEECSSCC-CCC---SSBHHHHHHHH
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCcEEEECCeeeEeechhcc-ccc---CCCHHHHHHHh
Confidence 4678999999999999999999999999988 88999988877765532110 000 01112222111
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~ 206 (317)
.. .... .....+.++++.+++ ..++++.+|||||+||+.|| +++||||++||+.....+
T Consensus 355 ~~--------~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 355 SK--------DALS--TSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp CS--------STTC--TTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHH
T ss_pred hh--------hccc--hhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 10 0000 112346778888888 67889999999999999998 999999999999986555
Q ss_pred HHH---hcc--cCcEEEecCCCCh-hhHHH
Q 021103 207 LHE---YKI--HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 207 l~~---l~~--~~~~i~~shd~~~-~~~~~ 230 (317)
++. +.. ..++|++|||... ..+||
T Consensus 425 ~~~l~~l~~~~g~tvi~vsHdl~~~~~~aD 454 (538)
T 3ozx_A 425 AKAIKRVTRERKAVTFIIDHDLSIHDYIAD 454 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 444 432 2389999999553 34443
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.86 E-value=3e-23 Score=204.50 Aligned_cols=173 Identities=15% Similarity=0.143 Sum_probs=111.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+++||+||||||||||+++|+|...| .+|.|.++|.++...+... .+...+++.|
T Consensus 360 ~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~-----------~~G~i~i~g~~i~~~~~~~----~r~~i~~v~Q 424 (587)
T 3qf4_A 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDP-----------ERGRVEVDELDVRTVKLKD----LRGHISAVPQ 424 (587)
T ss_dssp EEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCC-----------SEEEEEESSSBGGGBCHHH----HHHHEEEECS
T ss_pred eceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccC-----------CCcEEEECCEEcccCCHHH----HHhheEEECC
Confidence 578899999999999999999999999999999988 8999999997653221100 0011111111
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHc-----------cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAV-----------GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~-----------~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+ .. +....+.+.+.++.. |+ ...++..+||||||||+++|
T Consensus 425 ~~~lf~~tv~eni~~---~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~i 500 (587)
T 3qf4_A 425 ETVLFSGTIKENLKW---GR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKV 500 (587)
T ss_dssp SCCCCSEEHHHHHTT---TC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSE
T ss_pred CCcCcCccHHHHHhc---cC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCE
Confidence 1111100 111111 01 111112233333332 33 45677889999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+.....+.+.+. ...|+|++||+...... ...++++++..+...+
T Consensus 501 lllDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~----------~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 501 LILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALL----------ADKILVLHEGKVAGFG 559 (587)
T ss_dssp EEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTT----------SSEEEEEETTEEEEEE
T ss_pred EEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHh----------CCEEEEEECCEEEEEC
Confidence 99999999999998666655543 34599999999654332 3567888877665433
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.6e-21 Score=179.64 Aligned_cols=233 Identities=21% Similarity=0.282 Sum_probs=145.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---------------------CeeEEEecCCCcccc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---------------------DTKIQLLDLPGIIEG 122 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---------------------g~~i~~~d~~g~~~~ 122 (317)
+++|+|+||||||||+|+|++....+++|||||++|+.|.+.+. +..+.++|+||+...
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~ 82 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKG 82 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcccc
Confidence 68999999999999999999987678999999999999988653 346899999999876
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-cccccCCccc---ccceeeee
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-RLNKRPPQIY---FKKKKTGG 186 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-~~~~~~~~LS---~g~~qr~~ 186 (317)
...+.+...+++..++.+|.+++++|... +..+.+.+...|...++ .+.++...+. .+.+....
T Consensus 83 a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~~~~~~~ 162 (368)
T 2dby_A 83 AHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARADRERLP 162 (368)
T ss_dssp CCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred ccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhccchhHHH
Confidence 55555555677778899999999998764 11222333333432222 1111111110 00000000
Q ss_pred eEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhc--ccceeeeeEEEecccC--CC---hhhHHHH
Q 021103 187 ISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEG--NRKYMKCVYVYNKIDV--IG---IDDVDKL 259 (317)
Q Consensus 187 ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~--~~~~~p~i~v~NK~D~--~~---~~~~~~l 259 (317)
-......+.+.+...... -+-+++.++ ...+.. ....+|+++|.||.|. .. +...+.+
T Consensus 163 ------------~~~~l~~~~~~L~~~~~~--~~~~~~~~~-~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v 227 (368)
T 2dby_A 163 ------------LLEAAEGLYVHLQEGKPA--RTFPPSEAV-ARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAV 227 (368)
T ss_dssp ------------HHHHHHHHHHHHHTTCCG--GGSCCCHHH-HHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHH
T ss_pred ------------HHHHHHHHHHHHhcCCCc--ccCCCCHHH-HHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHH
Confidence 001122222222221111 011222111 111111 2346899999999973 22 2333333
Q ss_pred hc-----CCCeEEEeccc----------------------cccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEecc
Q 021103 260 AR-----QPNSVVISCNL----------------------KLNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSVV 312 (317)
Q Consensus 260 ~~-----~~~~v~iSa~~----------------------~~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~~ 312 (317)
.. ...++++||+. +.|+++|.+.+++.|+.+++||+. |+..+|.++++|
T Consensus 228 ~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g----~~e~~aw~i~~g 303 (368)
T 2dby_A 228 RRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAG----EKEVRAWTVRRG 303 (368)
T ss_dssp HHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEES----SSCEEEEEEETT
T ss_pred HHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCC----CCCcceEEecCC
Confidence 22 24688999876 479999999999999999999964 346689999999
Q ss_pred cee
Q 021103 313 CYI 315 (317)
Q Consensus 313 ~~v 315 (317)
+|+
T Consensus 304 ~ta 306 (368)
T 2dby_A 304 TKA 306 (368)
T ss_dssp CBH
T ss_pred CcH
Confidence 997
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-21 Score=179.53 Aligned_cols=238 Identities=17% Similarity=0.218 Sum_probs=130.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCccccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGA 123 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~ 123 (317)
.+.+++|+|+||||||||||+|+|....++++||||.+|..|.+.+.+. .+.++|+||+....
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3678999999999999999999998878899999999999999988753 38899999998765
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCC------------chhhHHHHHHHHHHccc-----ccccc-CCcccccceeee
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASK------------SEGHRQILTKELEAVGL-----RLNKR-PPQIYFKKKKTG 185 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~------------~~~~~~~~~~~L~~~~l-----~~~~~-~~~LS~g~~qr~ 185 (317)
..+.+...++...++.+|.+++++|... +..+.+.+...|....+ .+.+. ....|+|.+..
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~~~~- 179 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGDKKL- 179 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC---------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccchhh-
Confidence 5555555567778899999999998652 22223334333332222 11111 01122332211
Q ss_pred eeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhh--HHHHHhcccceeeeeEEEeccc--CC--ChhhHHHH
Q 021103 186 GISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDD--LIDVIEGNRKYMKCVYVYNKID--VI--GIDDVDKL 259 (317)
Q Consensus 186 ~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~--~~~~~~~~~~~~p~i~v~NK~D--~~--~~~~~~~l 259 (317)
.........+...|...+..+-...+++.++ ++..+ ....++|+++++|+.+ .. .+.++..+
T Consensus 180 -----------~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~-~llt~KPviy~~Nv~e~~~~~~~n~~~~~v 247 (396)
T 2ohf_A 180 -----------KPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKH-LFLTSKPMVYLVNLSEKDYIRKKNKWLIKI 247 (396)
T ss_dssp -----------CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHH-CCGGGSCEEEEEECCHHHHHHTCCHHHHHH
T ss_pred -----------hhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHH-HHHhCCceEEEEEecHHHhcccccHHHHHH
Confidence 1112223333333433311110012444442 22222 1235799999999973 32 12223322
Q ss_pred hc-------CCCeEEEecccc---------------------ccHHHHHHHHHHHhCeeEEEecCCCCCCCCCCCEEEec
Q 021103 260 AR-------QPNSVVISCNLK---------------------LNLDRLLARMWEEMGLVRVYTKPQGQQPDFTEPVVLSV 311 (317)
Q Consensus 260 ~~-------~~~~v~iSa~~~---------------------~~i~~l~~~i~~~l~~~~~~~~~~~~~~~~~~p~~~~~ 311 (317)
.+ ...++++||... .++++|.+..++.|+.+++||+.|. .-+|.++++
T Consensus 248 ~~~~~~~~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~~----evrawti~~ 323 (396)
T 2ohf_A 248 KEWVDKYDPGALVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGPD----EVRAWTIRK 323 (396)
T ss_dssp HHHHHHHSTTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESSS----EEEEEEEET
T ss_pred HHHHHhhCCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCCC----cceeEEecC
Confidence 22 234899999864 4599999999999999999997653 347999999
Q ss_pred ccee
Q 021103 312 VCYI 315 (317)
Q Consensus 312 ~~~v 315 (317)
|+|+
T Consensus 324 g~ta 327 (396)
T 2ohf_A 324 GTKA 327 (396)
T ss_dssp TCBH
T ss_pred CCcH
Confidence 9996
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=176.41 Aligned_cols=163 Identities=26% Similarity=0.319 Sum_probs=106.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~~d 141 (317)
.+++|+|+||||||||+|+|+|....+++++|+|+++..|.+.++|.++.++||+|+........ .........+..+|
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~~~~aD 259 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSEAKYSD 259 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHGGGGSS
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHHHHhCC
Confidence 35999999999999999999999888899999999999999999999999999999865432221 22233445677899
Q ss_pred EEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++|...+.. ....+.. ..++++.+.
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~-----------------------------------------~~~~L~~l~--------- 289 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQS-----------------------------------------SFEILREIG--------- 289 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHH-----------------------------------------HHHHHHHHT---------
T ss_pred EEEEEEECCCCcchHHHHHHH-----------------------------------------HHHHHHHhC---------
Confidence 9999999865431 1111110 111222111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhH---HHH----hc----CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DKL----AR----QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~---~~l----~~----~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
....|+++|.||+|+.+.... ..+ .. .+..+++||+++.|++.|.+.|.+.+..
T Consensus 290 ---------------~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~ 354 (364)
T 2qtf_A 290 ---------------VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQ 354 (364)
T ss_dssp ---------------CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred ---------------cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence 014789999999999864311 111 11 1246899999999999999999887754
Q ss_pred e
Q 021103 290 V 290 (317)
Q Consensus 290 ~ 290 (317)
-
T Consensus 355 ~ 355 (364)
T 2qtf_A 355 L 355 (364)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-22 Score=198.11 Aligned_cols=145 Identities=12% Similarity=0.164 Sum_probs=98.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|+++||+|+||||||||+++|+|...| .+|.|.+ ...+.++....... . .. .+........
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~i~~-~~~i~~v~Q~~~~~-~--~~-tv~~~~~~~~ 372 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKIEW-DLTVAYKPQYIKAD-Y--EG-TVYELLSKID 372 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBCCCCC-CCCEEEECSSCCCC-C--SS-BHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEE-CceEEEEecCCcCC-C--CC-cHHHHHHhhh
Confidence 478999999999999999999999999988 6777766 33344432110000 0 00 0111111000
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
. . .....+.+.++|+.+++ ..++++.+|||||+||+.|| +++||||++||+.....++
T Consensus 373 ~--------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~ 441 (538)
T 1yqt_A 373 A--------S---KLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 441 (538)
T ss_dssp H--------H---HHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred c--------c---CCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHH
Confidence 0 0 00113456778899998 67889999999999999998 9999999999999866555
Q ss_pred HHhc----c-cCcEEEecCCCCh-hhHHH
Q 021103 208 HEYK----I-HNAEVLFREDATV-DDLID 230 (317)
Q Consensus 208 ~~l~----~-~~~~i~~shd~~~-~~~~~ 230 (317)
+.+. . ..++|++|||... ..+||
T Consensus 442 ~~l~~l~~~~g~tvi~vsHd~~~~~~~~d 470 (538)
T 1yqt_A 442 RAIRHLMEKNEKTALVVEHDVLMIDYVSD 470 (538)
T ss_dssp HHHHHHHHHHTCEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 5443 2 3499999999543 34443
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-22 Score=199.37 Aligned_cols=140 Identities=12% Similarity=0.156 Sum_probs=96.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|+++||+||||||||||+++|+|...| .+|.|.+ ...+.++....... . .. .+........
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-----------~~G~I~~-~~~i~~v~Q~~~~~-~--~~-tv~e~~~~~~ 442 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEP-----------TEGKVEW-DLTVAYKPQYIKAE-Y--EG-TVYELLSKID 442 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SBSCCCC-CCCEEEECSSCCCC-C--SS-BHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CceEEEE-eeEEEEEecCccCC-C--CC-cHHHHHHhhh
Confidence 578999999999999999999999999988 6777766 23344432110000 0 00 0111111100
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l 207 (317)
. . .....+.+.++|+.+++ ..++++.+|||||+||+.|| +++||||++||+.....++
T Consensus 443 ~--------~---~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~ 511 (607)
T 3bk7_A 443 S--------S---KLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511 (607)
T ss_dssp H--------H---HHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHH
T ss_pred c--------c---CCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHH
Confidence 0 0 00113456788999998 67889999999999999998 9999999999999865555
Q ss_pred HHhc----c-cCcEEEecCCCCh
Q 021103 208 HEYK----I-HNAEVLFREDATV 225 (317)
Q Consensus 208 ~~l~----~-~~~~i~~shd~~~ 225 (317)
+.+. . ..++|++|||...
T Consensus 512 ~~l~~l~~~~g~tvi~vsHd~~~ 534 (607)
T 3bk7_A 512 RAIRHLMEKNEKTALVVEHDVLM 534 (607)
T ss_dssp HHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHHHHHhCCCEEEEEeCCHHH
Confidence 5443 2 3499999999554
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.7e-22 Score=209.89 Aligned_cols=183 Identities=15% Similarity=0.150 Sum_probs=126.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|++|||||++|||||||+++|.|...| .+|.|.++|.++.-++... .+..++.++|
T Consensus 1096 ~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-----------~~G~I~iDG~di~~i~~~~----lR~~i~~V~Q 1160 (1321)
T 4f4c_A 1096 KGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-----------LGGEIFIDGSEIKTLNPEH----TRSQIAIVSQ 1160 (1321)
T ss_dssp EEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCC-----------SSSEEEETTEETTTBCHHH----HHTTEEEECS
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHhcCccC-----------CCCEEEECCEEhhhCCHHH----HHhheEEECC
Confidence 478999999999999999999999999999999988 8999999998764333211 1122223333
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+..+. .....+.+.+.++..++ .....-.+||||||||++||
T Consensus 1161 dp~LF~gTIreNI~~gld~--~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~I 1238 (1321)
T 4f4c_A 1161 EPTLFDCSIAENIIYGLDP--SSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKI 1238 (1321)
T ss_dssp SCCCCSEEHHHHHSSSSCT--TTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSE
T ss_pred CCEeeCccHHHHHhccCCC--CCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCE
Confidence 3222221 2333222222 12234456777776665 12223467999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+++||||++||.++-..+.+.+. ...|+|+++|....-. ....|+|+.++-++..+..+++.+.
T Consensus 1239 LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~----------~aD~I~Vld~G~IvE~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1239 LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM----------NADCIAVVSNGTIIEKGTHTQLMSE 1305 (1321)
T ss_dssp EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT----------TCSEEEEESSSSEEEEECHHHHHHC
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH----------hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999998666666665 3459999999854322 3567999999888766666665543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-21 Score=191.30 Aligned_cols=164 Identities=14% Similarity=0.085 Sum_probs=95.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE---------EECCeeEEEecCCCccccc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i---------~~~g~~i~~~d~~g~~~~~ 123 (317)
.+++ .+.+|+++||+|+||||||||+++|+|...| .+|.+ .+.|..+.....+.. ..
T Consensus 39 ~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-----------~~G~~~~~~~~~~~~~~g~~~~~~~~~~~--~~ 104 (538)
T 1yqt_A 39 YRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIP-----------NLCGDNDSWDGVIRAFRGNELQNYFEKLK--NG 104 (538)
T ss_dssp ECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCC-----------CTTTTCCSHHHHHHHTTTSTHHHHHHHHH--TT
T ss_pred cCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccCcchhhhHHhhCCccHHHHHHHHH--HH
Confidence 4556 6788999999999999999999999999887 44432 112211100000000 00
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeec
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....++..|........ ....+.+........+++.++|+.+++ ..++++.+|||||+||+.|| |++|
T Consensus 105 ~~~~~~~~q~~~~~~~~-~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLD 183 (538)
T 1yqt_A 105 EIRPVVKPQYVDLIPKA-VKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFD 183 (538)
T ss_dssp SCCCEEECSCGGGSGGG-CCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred hhhhhhhhhhhhhcchh-hhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 00000000000000000 000000000000011246778999998 67889999999999999998 9999
Q ss_pred CCCCCCCHHHHHHH---HHHhccc-CcEEEecCCCC-hhhHHHH
Q 021103 193 LPLTHVDEKLCYQI---LHEYKIH-NAEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 193 EPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd~~-~~~~~~~ 231 (317)
|||++||+.....+ ++.+... .++|++|||.. +..+||+
T Consensus 184 EPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dr 227 (538)
T 1yqt_A 184 EPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDI 227 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSE
T ss_pred CCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 99999999985554 4444433 49999999944 3444444
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-20 Score=185.25 Aligned_cols=147 Identities=14% Similarity=0.151 Sum_probs=95.9
Q ss_pred CCcEEEEeCC-----cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc
Q 021103 53 EGFEVTKFGH-----GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 53 ~~~~~~~~~g-----~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~ 127 (317)
.++++.+..| +++||+||||||||||+++|+|+..| .+|.. +.+..+.++... +.....
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p-----------~~G~~-~~~~~i~~~~q~-~~~~~~--- 427 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP-----------DEGQD-IPKLNVSMKPQK-IAPKFP--- 427 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC-----------SBCCC-CCSCCEEEECSS-CCCCCC---
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCC-----------CCCcC-ccCCcEEEeccc-ccccCC---
Confidence 3577777777 78999999999999999999999988 44431 112223222110 000000
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
..+.+.... . . .........+.++++.+++ ..++++.+|||||+||+.|| |++||||+
T Consensus 428 ~tv~e~~~~-~--------~--~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 428 GTVRQLFFK-K--------I--RGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp SBHHHHHHH-H--------C--SSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred ccHHHHHHH-H--------h--hcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 001111100 0 0 0111123456678889998 68899999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhc-c-cCcEEEecCCCChh
Q 021103 197 HVDEKLCYQI---LHEYK-I-HNAEVLFREDATVD 226 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~-~-~~~~i~~shd~~~~ 226 (317)
+||+.....+ ++.+. . ..++|++|||....
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~ 531 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMA 531 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 9999876554 44443 2 34999999995533
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.3e-19 Score=170.76 Aligned_cols=175 Identities=29% Similarity=0.425 Sum_probs=128.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
.++++++..++.++|+|+||||||||||+|++..+.+++||+||+.|..|.+.+++ ..+.+.|+||+............
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~ 227 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGL 227 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCH
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhH
Confidence 47888888899999999999999999999999987789999999999999999986 78899999998764433333333
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
.+......++.++++++.. .. ++.+||++++|+..++ .
T Consensus 228 ~fl~~~era~~lL~vvDls-~~-------------------~~~~ls~g~~el~~la-------------------~--- 265 (416)
T 1udx_A 228 EFLRHIARTRVLLYVLDAA-DE-------------------PLKTLETLRKEVGAYD-------------------P--- 265 (416)
T ss_dssp HHHHHHTSSSEEEEEEETT-SC-------------------HHHHHHHHHHHHHHHC-------------------H---
T ss_pred HHHHHHHHHHhhhEEeCCc-cC-------------------CHHHHHHHHHHHHHHh-------------------H---
Confidence 4445566789999999875 11 0112333333332210 0
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH----hc-CCCeEEEeccccccHHHHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL----AR-QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l----~~-~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. ....|.++|+||+|+...+.++.+ .. ...++++||+++.|+++|++.|.+.
T Consensus 266 -------------------a----L~~~P~ILVlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~ 322 (416)
T 1udx_A 266 -------------------A----LLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHAL 322 (416)
T ss_dssp -------------------H----HHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -------------------H----hhcCCEEEEEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHH
Confidence 0 013799999999999876433322 12 2368899999999999999999998
Q ss_pred hCeeEE
Q 021103 287 MGLVRV 292 (317)
Q Consensus 287 l~~~~~ 292 (317)
+...+.
T Consensus 323 l~~~~~ 328 (416)
T 1udx_A 323 VRSTPP 328 (416)
T ss_dssp HHTSCC
T ss_pred HHhccc
Confidence 865443
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-21 Score=188.57 Aligned_cols=74 Identities=14% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH---HHHHhcccCcEEEecCCC
Q 021103 158 ILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 158 ~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~---~l~~l~~~~~~i~~shd~ 223 (317)
.+.++++.+++ ..++++.+|||||+||+.|| +++||||++||+..... +++.+....++|++|||.
T Consensus 118 ~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl 197 (538)
T 3ozx_A 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197 (538)
T ss_dssp CHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred HHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeCh
Confidence 45678889998 67889999999999999998 99999999999987554 455554444999999995
Q ss_pred C-hhhHHHH
Q 021103 224 T-VDDLIDV 231 (317)
Q Consensus 224 ~-~~~~~~~ 231 (317)
. +..+||.
T Consensus 198 ~~~~~~~d~ 206 (538)
T 3ozx_A 198 IVLDYLTDL 206 (538)
T ss_dssp HHHHHHCSE
T ss_pred HHHHhhCCE
Confidence 4 4444443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.7e-21 Score=189.24 Aligned_cols=75 Identities=15% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH---HHHHhcccC-cEEEecC
Q 021103 157 QILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ---ILHEYKIHN-AEVLFRE 221 (317)
Q Consensus 157 ~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~---~l~~l~~~~-~~i~~sh 221 (317)
..+.++|+.+++ ..++++.+|||||+||++|| +++||||++||+..... +++.+...+ ++|++||
T Consensus 200 ~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 279 (608)
T 3j16_B 200 EDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEH 279 (608)
T ss_dssp HHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECS
T ss_pred HHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 567888999999 78899999999999999998 99999999999987554 455554434 9999999
Q ss_pred CCC-hhhHHHH
Q 021103 222 DAT-VDDLIDV 231 (317)
Q Consensus 222 d~~-~~~~~~~ 231 (317)
|.. +..++|+
T Consensus 280 dl~~~~~~~dr 290 (608)
T 3j16_B 280 DLSVLDYLSDF 290 (608)
T ss_dssp CHHHHHHHCSE
T ss_pred CHHHHHHhCCE
Confidence 944 4444444
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.4e-21 Score=190.82 Aligned_cols=155 Identities=13% Similarity=0.085 Sum_probs=92.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEE---------EECCeeEEEecCCCcccccc
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGII---------HYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i---------~~~g~~i~~~d~~g~~~~~~ 124 (317)
+++ .+.+|+++||+||||||||||+++|+|...| .+|.+ .+.|..+...... ... ..
T Consensus 110 ~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-----------~~G~~~~~~~~~~~~~~G~~~~~~~~~-~~~-~~ 175 (607)
T 3bk7_A 110 RLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIP-----------NLCEDNDSWDNVIRAFRGNELQNYFER-LKN-GE 175 (607)
T ss_dssp CCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCC-----------CTTTTCCCHHHHHHHTTTSTHHHHHHH-HHH-TS
T ss_pred CCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCC-----------CCCccccccchhhheeCCEehhhhhhh-hhh-hh
Confidence 455 6778999999999999999999999999987 44442 1122111000000 000 00
Q ss_pred CCchhHHHHHhhhccC--cEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eee
Q 021103 125 EGKGRGRQVIAVSKSS--DIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~--d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
...++..|........ ..+...+... ...+.+.++|+.+++ ..++++.+|||||+||++|| |++
T Consensus 176 ~~i~~~~q~~~~~~~~~~~tv~e~l~~~---~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlL 252 (607)
T 3bk7_A 176 IRPVVKPQYVDLLPKAVKGKVRELLKKV---DEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFF 252 (607)
T ss_dssp CCCEEECSCGGGGGGTCCSBHHHHHHHT---CCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEE
T ss_pred cceEEeechhhhchhhccccHHHHhhhh---HHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0000000000000000 0000000000 011246778999999 67889999999999999998 999
Q ss_pred cCCCCCCCHHHHHHH---HHHhcc-cCcEEEecCCCCh
Q 021103 192 TLPLTHVDEKLCYQI---LHEYKI-HNAEVLFREDATV 225 (317)
Q Consensus 192 DEPt~~LD~~~~~~~---l~~l~~-~~~~i~~shd~~~ 225 (317)
||||++||+.....+ ++.+.. ..++|++|||...
T Consensus 253 DEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~ 290 (607)
T 3bk7_A 253 DEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAV 290 (607)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHH
Confidence 999999999985554 444433 3499999999543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.2e-21 Score=203.79 Aligned_cols=180 Identities=13% Similarity=0.119 Sum_probs=114.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++...+. ...+...++++|
T Consensus 1050 ~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p-----------~~G~I~i~g~~i~~~~~----~~~r~~i~~v~Q 1114 (1284)
T 3g5u_A 1050 QGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-----------MAGSVFLDGKEIKQLNV----QWLRAQLGIVSQ 1114 (1284)
T ss_dssp SSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCC-----------SEEEEESSSSCTTSSCH----HHHTTSCEEEES
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCC-----------CCCEEEECCEEcccCCH----HHHHhceEEECC
Confidence 578899999999999999999999999999999988 89999999976532111 011122222222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.... .....+.+.+.++..++ .......+||||||||++||
T Consensus 1115 ~~~l~~~ti~eNi~~~~~~--~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~i 1192 (1284)
T 3g5u_A 1115 EPILFDCSIAENIAYGDNS--RVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192 (1284)
T ss_dssp SCCCCSSBHHHHHTCCCSS--CCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSS
T ss_pred CCccccccHHHHHhccCCC--CCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCE
Confidence 2211110 1111111100 01112234444444433 22334568999999999998
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.+...+.+.+ ....|+|++|||...... ...|+|+.+.-+...+..+++
T Consensus 1193 LiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~----------~dri~vl~~G~i~~~g~~~~l 1256 (1284)
T 3g5u_A 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQN----------ADLIVVIQNGKVKEHGTHQQL 1256 (1284)
T ss_dssp EEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGS----------CSEEEEEETBEEEEEECHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHc----------CCEEEEEECCEEEEECCHHHH
Confidence 9999999999998855555444 334499999999664332 456888887766544433333
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-20 Score=192.64 Aligned_cols=69 Identities=12% Similarity=0.073 Sum_probs=59.5
Q ss_pred HHHHHHHHHccc-c---ccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCC
Q 021103 157 QILTKELEAVGL-R---LNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFRED 222 (317)
Q Consensus 157 ~~~~~~L~~~~l-~---~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd 222 (317)
..+.+.|+.+|+ . .++++..|||||+||+.|| |++||||++||+.....+++.+... +++|++|||
T Consensus 878 ~~i~~~Le~lGL~~~~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD 957 (986)
T 2iw3_A 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHS 957 (986)
T ss_dssp HHHHHHHHHTTCCHHHHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSC
T ss_pred HHHHHHHHHcCCCchhhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECC
Confidence 467888999999 2 4778999999999999998 9999999999999988888887753 599999999
Q ss_pred CCh
Q 021103 223 ATV 225 (317)
Q Consensus 223 ~~~ 225 (317)
.+.
T Consensus 958 ~e~ 960 (986)
T 2iw3_A 958 AEF 960 (986)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-20 Score=188.40 Aligned_cols=70 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred HHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCC
Q 021103 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFRED 222 (317)
Q Consensus 161 ~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd 222 (317)
..|+.+|+ ..++++.+|||||+||+.|| +++||||++||+.....+ ++.+...+ |+|++|||
T Consensus 184 ~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 184 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp HHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 34778888 26889999999999999988 899999999999875554 44444334 99999999
Q ss_pred CChhhHHH
Q 021103 223 ATVDDLID 230 (317)
Q Consensus 223 ~~~~~~~~ 230 (317)
..+...+|
T Consensus 264 ~~~~~~~d 271 (670)
T 3ux8_A 264 EDTMLAAD 271 (670)
T ss_dssp HHHHHHCS
T ss_pred HHHHhhCC
Confidence 66544443
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-19 Score=148.73 Aligned_cols=161 Identities=20% Similarity=0.257 Sum_probs=109.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSK 138 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~ 138 (317)
++.+++|+|+||||||||+|+|++...+ ++++|+||++...+.+.++|.++.++||||+......... ........++
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 82 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHHHHHHHHHHH
Confidence 3678999999999999999999998754 7889999999999999999999999999998542111000 0112233567
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|......... ..++..
T Consensus 83 ~ad~~i~v~D~~~~~s~~~--~~~~~~----------------------------------------------------- 107 (172)
T 2gj8_A 83 QADRVLFMVDGTTTDAVDP--AEIWPE----------------------------------------------------- 107 (172)
T ss_dssp TCSEEEEEEETTTCCCCSH--HHHCHH-----------------------------------------------------
T ss_pred hCCEEEEEEECCCCCCHHH--HHHHHH-----------------------------------------------------
Confidence 8999999998764321100 000000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH-hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL-ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l-~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+.+. .....|+++|.||+|+..... +.. ......+.+||+++.|++++.+.|.+.+..
T Consensus 108 ---------~~~~---~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 108 ---------FIAR---LPAKLPITVVRNKADITGETL-GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp ---------HHHH---SCTTCCEEEEEECHHHHCCCC-EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ---------HHHh---cccCCCEEEEEECccCCcchh-hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 0000 012479999999999853211 100 112357889999999999999999887753
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-20 Score=199.81 Aligned_cols=173 Identities=12% Similarity=0.129 Sum_probs=110.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|...| .+|.|.++|.++..++... .+...+++.|
T Consensus 407 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~-----------~~G~i~i~g~~i~~~~~~~----~r~~i~~v~Q 471 (1284)
T 3g5u_A 407 KGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDP-----------LDGMVSIDGQDIRTINVRY----LREIIGVVSQ 471 (1284)
T ss_dssp EEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHHEEEECS
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-----------CCeEEEECCEEHHhCCHHH----HHhheEEEcC
Confidence 468899999999999999999999999999999988 8999999998753221100 0001111111
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHcc-----------c--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVG-----------L--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~-----------l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+... ....+.+.+.++..+ + ....+..+||||||||++||
T Consensus 472 ~~~l~~~ti~eNi~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~i 547 (1284)
T 3g5u_A 472 EPVLFATTIAENIRYGRE----DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKI 547 (1284)
T ss_dssp SCCCCSSCHHHHHHHHCS----SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred CCccCCccHHHHHhcCCC----CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCE
Confidence 1111100 111111110 011122333332222 2 34456679999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+++...+.+.+ ....|+|++||+..... ....|+|+++.-+...+
T Consensus 548 liLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~----------~~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 548 LLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR----------NADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp EEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT----------TCSEEEECSSSCCCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH----------cCCEEEEEECCEEEEEC
Confidence 9999999999998755544444 34459999999954332 24568888888777543
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-19 Score=164.96 Aligned_cols=169 Identities=28% Similarity=0.404 Sum_probs=124.1
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC-eeEEEecCCCccccccCCchhHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND-TKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g-~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+.++..--..|+|+|.+|||||||+|+|++..+.+++|||||++|..|.+.+++ ..+.++|+||+........+...++
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~f 230 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQF 230 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHH
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHH
Confidence 334444456799999999999999999999887789999999999999999986 7899999999876544444455666
Q ss_pred HhhhccCcEEEEEecCCC---ch--hhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHH
Q 021103 134 IAVSKSSDIVLMVLDASK---SE--GHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILH 208 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~---~~--~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~ 208 (317)
+..+..++++++++|... .. .+...+...|..+.
T Consensus 231 l~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~----------------------------------------- 269 (342)
T 1lnz_A 231 LRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN----------------------------------------- 269 (342)
T ss_dssp HHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC-----------------------------------------
T ss_pred HHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh-----------------------------------------
Confidence 667778999999999864 11 11111111111110
Q ss_pred HhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc-C---CCeEEEeccccccHHHHHHHH
Q 021103 209 EYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR-Q---PNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 209 ~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~-~---~~~v~iSa~~~~~i~~l~~~i 283 (317)
.....+|+++|+||+|+.... ..+.+.+ . ..++++||+++.|+++|.+.|
T Consensus 270 -------------------------~~l~~~p~ilV~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l 324 (342)
T 1lnz_A 270 -------------------------LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEV 324 (342)
T ss_dssp -------------------------SSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHH
T ss_pred -------------------------hhhcCCCEEEEEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHH
Confidence 001247999999999998653 2333322 2 467899999999999999999
Q ss_pred HHHhCe
Q 021103 284 WEEMGL 289 (317)
Q Consensus 284 ~~~l~~ 289 (317)
.+.+..
T Consensus 325 ~~~l~~ 330 (342)
T 1lnz_A 325 ANQLEN 330 (342)
T ss_dssp HHHHTS
T ss_pred HHHHhh
Confidence 998864
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-20 Score=201.16 Aligned_cols=174 Identities=15% Similarity=0.138 Sum_probs=115.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+++|+.+||+||+|||||||+++|.|...| .+|.|.++|.++.-++...+ +...+++.|
T Consensus 435 ~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~-----------~~G~I~idG~~i~~~~~~~l----r~~i~~v~Q 499 (1321)
T 4f4c_A 435 RGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV-----------LKGKITIDGVDVRDINLEFL----RKNVAVVSQ 499 (1321)
T ss_dssp EEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHHH----HHHEEEECS
T ss_pred eceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc-----------ccCcccCCCccchhccHHHH----hhcccccCC
Confidence 478899999999999999999999999999999988 89999999987542221100 011111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .|++.+. .+....+.+.+.++..++ .....-.+||||||||++||
T Consensus 500 ~~~Lf~~TI~eNI~~g----~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~I 575 (1321)
T 4f4c_A 500 EPALFNCTIEENISLG----KEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKI 575 (1321)
T ss_dssp SCCCCSEEHHHHHHTT----CTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSE
T ss_pred cceeeCCchhHHHhhh----cccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCE
Confidence 1111111 1222211 111223445555555443 23445578999999999999
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 189 FNSTLPLTHVDEKLCYQ---ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~---~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+++|||||+||.++... .+..+....|+|+++|+...-. ....|+|+++.-++..+.
T Consensus 576 liLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~----------~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 576 LLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR----------NADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp EEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT----------TCSEEEEEETTEEEEEEC
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH----------hCCEEEEeeCCeeeccCC
Confidence 99999999999876444 4444445569999999965433 356788998887765433
|
| >1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.2e-18 Score=163.49 Aligned_cols=154 Identities=27% Similarity=0.308 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCchh-HHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKGR-GRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~~-~~~~~~~~~ 138 (317)
+.+|+|+|+||||||||+|+|++... .++++||||+++..+.+.++|.++.++||||+. ......... .......+.
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 56899999999999999999999874 589999999999999999999999999999987 432211111 123345668
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|......... .+++ +
T Consensus 323 ~aD~vl~VvD~s~~~s~~~--~~il--------------------------------------------~---------- 346 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEED--RKIL--------------------------------------------E---------- 346 (482)
T ss_dssp HCSEEEEEEETTSCCCHHH--HHHH--------------------------------------------H----------
T ss_pred cccEEEEEecCCCCCCHHH--HHHH--------------------------------------------H----------
Confidence 8999999999765422111 0011 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.+ ..+|+++|+||+|+... +++.....+ .+++.+||+++.|+++|.+.|.+.+
T Consensus 347 ------------~l----~~~piivV~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~ 403 (482)
T 1xzp_A 347 ------------RI----KNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRET 403 (482)
T ss_dssp ------------HH----TTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHT
T ss_pred ------------Hh----cCCCEEEEEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 01 14799999999999753 223222222 4689999999999999999998864
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.8e-19 Score=157.62 Aligned_cols=151 Identities=22% Similarity=0.297 Sum_probs=109.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC----Cch-hHHHHHhhhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE----GKG-RGRQVIAVSK 138 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~~-~~~~~~~~~~ 138 (317)
+|+|+|.+|||||||+|.|+|....++++|++|++...|.+.++|..+.++||||....... ... ..........
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~ 82 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDL 82 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhC
Confidence 79999999999999999999998789999999999999999999999999999998654321 111 1111122236
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|++++++|+....... .+...
T Consensus 83 ~~d~vi~VvDas~~~~~~-~l~~~-------------------------------------------------------- 105 (256)
T 3iby_A 83 EYDCIINVIDACHLERHL-YLTSQ-------------------------------------------------------- 105 (256)
T ss_dssp CCSEEEEEEEGGGHHHHH-HHHHH--------------------------------------------------------
T ss_pred CCCEEEEEeeCCCchhHH-HHHHH--------------------------------------------------------
Confidence 799999999986532111 01000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
+. ....|+++|+||+|+.... ..+.+.+ ..+++++||++|.|+++|.+.|.+.
T Consensus 106 -------------l~--~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 106 -------------LF--ELGKPVVVALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -------------HT--TSCSCEEEEEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred -------------HH--HcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 00 1147999999999986432 1222322 2578999999999999999999876
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=7.5e-19 Score=157.26 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=111.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccC----Cch-hHHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE----GKG-RGRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~----~~~-~~~~~~~~~ 137 (317)
.+|+|+|.+|||||||+|+|+|....++++|++|++...|.+.+++.++.++||||..+.... ... .........
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 83 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILS 83 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHHhh
Confidence 479999999999999999999998779999999999999999999999999999998654321 110 111222234
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.......... ..+
T Consensus 84 ~~~d~ii~VvD~~~~~~~~~~~-~~l------------------------------------------------------ 108 (274)
T 3i8s_A 84 GDADLLINVVDASNLERNLYLT-LQL------------------------------------------------------ 108 (274)
T ss_dssp TCCSEEEEEEEGGGHHHHHHHH-HHH------------------------------------------------------
T ss_pred cCCCEEEEEecCCChHHHHHHH-HHH------------------------------------------------------
Confidence 6899999999976422111100 000
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ....|+++|+||+|+.... ..+.+.+ ..+++++||++|.|+++|.+.|.+.+.
T Consensus 109 ---------------~--~~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~ 168 (274)
T 3i8s_A 109 ---------------L--ELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKA 168 (274)
T ss_dssp ---------------H--HHTCCEEEEEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCC
T ss_pred ---------------H--hcCCCEEEEEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 0 0147999999999986432 1222222 256899999999999999999988765
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-18 Score=154.87 Aligned_cols=156 Identities=22% Similarity=0.273 Sum_probs=113.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~ 140 (317)
+|+|+|+||||||||+|+|+|.... +++.|+||++...|.+..++.++.++||||+.+... ... +.......++.+
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~-~l~~~~~~~~~~~l~~a 87 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD-ALGEFMDQEVYEALADV 87 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS-HHHHHHHHHHHHHTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhh-HHHHHHHHHHHHHHhcC
Confidence 7999999999999999999998764 789999999999998888899999999999865321 111 122334567889
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|+....... ..+.+.+.
T Consensus 88 d~il~VvD~~~~~~~~~~~i~~~l~------------------------------------------------------- 112 (301)
T 1wf3_A 88 NAVVWVVDLRHPPTPEDELVARALK------------------------------------------------------- 112 (301)
T ss_dssp SEEEEEEETTSCCCHHHHHHHHHHG-------------------------------------------------------
T ss_pred CEEEEEEECCCCCChHHHHHHHHHH-------------------------------------------------------
Confidence 9999999986532211 11111110
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HH-HHh---cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VD-KLA---RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~-~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
......|+++|+||+|+..... +. .+. .+..++++||++|.|++.|.+.|.+.+..
T Consensus 113 --------------~~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 113 --------------PLVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp --------------GGTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred --------------hhcCCCCEEEEEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 0001479999999999986543 32 222 23457999999999999999999987753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=139.29 Aligned_cols=153 Identities=25% Similarity=0.321 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+++|+|+||||||||+|+|+|....++++|++|++...+.+.+++..+.++||||.......... ...........++
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 83 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCC
Confidence 479999999999999999999988778899999999999999999999999999997643211100 0111111123689
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|...... ...++..
T Consensus 84 ~~i~v~D~~~~~~----~~~~~~~-------------------------------------------------------- 103 (165)
T 2wji_A 84 LVVNIVDATALER----NLYLTLQ-------------------------------------------------------- 103 (165)
T ss_dssp EEEEEEETTCHHH----HHHHHHH--------------------------------------------------------
T ss_pred EEEEEecCCchhH----hHHHHHH--------------------------------------------------------
Confidence 9999998764211 1111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+. ....|+++|.||+|+.... +.+.+.+ ....+.+||++|.|++++.+.+.+.+
T Consensus 104 ----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 104 ----------LM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp ----------HH--HTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred ----------HH--hcCCCEEEEEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence 00 0147999999999985321 1222222 24688999999999999999998765
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=8.7e-18 Score=152.84 Aligned_cols=158 Identities=28% Similarity=0.312 Sum_probs=115.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEEC-CeeEEEecCCCcccccc-CC--chhHHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYN-DTKIQLLDLPGIIEGAS-EG--KGRGRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~-g~~i~~~d~~g~~~~~~-~~--~~~~~~~~~~~ 137 (317)
..|+|+|++|||||||+|.|+|.... ++++|+||++...|.+..+ +.++.++||||+.+... .. ..+.......+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l 90 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSL 90 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHh
Confidence 48999999999999999999998764 7899999999999999998 99999999999865331 11 11122334456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+........ ...++ +.+.
T Consensus 91 ~~aD~il~VvD~~~~~~~~~-~~~~~--------------------------------------------~~l~------ 119 (308)
T 3iev_A 91 EEADVILFMIDATEGWRPRD-EEIYQ--------------------------------------------NFIK------ 119 (308)
T ss_dssp HHCSEEEEEEETTTBSCHHH-HHHHH--------------------------------------------HHTG------
T ss_pred hcCCEEEEEEeCCCCCCchh-HHHHH--------------------------------------------HHHH------
Confidence 78999999999865422111 00001 1111
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCC-ChhhHH----HHh----cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI-GIDDVD----KLA----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~-~~~~~~----~l~----~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
....|+++|+||+|+. ..+... .+. .+..++++||.+|.|+++|.+.|.+.+.
T Consensus 120 ------------------~~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~ 181 (308)
T 3iev_A 120 ------------------PLNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP 181 (308)
T ss_dssp ------------------GGCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ------------------hcCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence 0247999999999998 443322 222 3467999999999999999999999885
Q ss_pred e
Q 021103 289 L 289 (317)
Q Consensus 289 ~ 289 (317)
.
T Consensus 182 ~ 182 (308)
T 3iev_A 182 E 182 (308)
T ss_dssp B
T ss_pred c
Confidence 4
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=157.47 Aligned_cols=156 Identities=24% Similarity=0.319 Sum_probs=110.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcc-ccccCCch--hHHHHHhhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGII-EGASEGKG--RGRQVIAVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~-~~~~~~~~--~~~~~~~~~ 137 (317)
..+|+|+|+||||||||+|+|+|... .+++.|+||++...|.+..++.++.++||||+. .... ... +.......+
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~-~l~~~~~~~~~~~l 86 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKR-AINRLMNKAASSSI 86 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHH-HHHHHHTCCTTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchh-hHHHHHHHHHHHHH
Confidence 34899999999999999999999875 478899999999999999999999999999985 2110 000 011122345
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+|++++++|+.........+.+ .
T Consensus 87 ~~~D~vl~Vvd~~~~~~~~~~i~~-----------------------------------------------~-------- 111 (301)
T 1ega_A 87 GDVELVIFVVEGTRWTPDDEMVLN-----------------------------------------------K-------- 111 (301)
T ss_dssp CCEEEEEEEEETTCCCHHHHHHHH-----------------------------------------------H--------
T ss_pred hcCCEEEEEEeCCCCCHHHHHHHH-----------------------------------------------H--------
Confidence 678999998887541111111111 0
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCC-hhhH----HHHhcC---CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-IDDV----DKLARQ---PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~~~~----~~l~~~---~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+. ....|.++|+||+|+.. ...+ ..+.+. ..++++||+++.|++.|.+.|.+.++.
T Consensus 112 --------------l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 112 --------------LR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp --------------HH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred --------------HH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 10 12479999999999987 3332 233332 348999999999999999999987753
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=160.66 Aligned_cols=155 Identities=21% Similarity=0.329 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~ 139 (317)
.+|+|+|.||+|||||+|.|+|.... ++++||+|++...+.+.++|..+.++||||+........ .+..+....++.
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 37999999999999999999998754 899999999999999999999999999999864322211 123344556788
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+.++|.
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~------------------------------------------------------ 107 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLR------------------------------------------------------ 107 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHH------------------------------------------------------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH------------------------------------------------------
Confidence 9999999997643221 111111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh--hhH-HHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDV-DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~-~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...+|+++|+||+|+... ... ..+.+ ...++++||.+|.|+++|.+.|.+.+.
T Consensus 108 -----------------~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 108 -----------------KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 165 (439)
T ss_dssp -----------------HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcc
Confidence 014799999999998643 112 22322 346899999999999999999988774
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-17 Score=159.50 Aligned_cols=159 Identities=24% Similarity=0.208 Sum_probs=92.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~ 139 (317)
+.+|+|+|++|||||||+|.|++... .++++|+||++...+.+.++|.++.++||||+.+........ .......+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 312 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE 312 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC------------------CEEEEETTEEEEEEC--------------------CCCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHHHHHHHhhccc
Confidence 56799999999999999999999864 589999999999999999999999999999986522111000 1123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|......... +.. ...+++.
T Consensus 313 aD~vl~VvD~s~~~s~~~-~~~-----------------------------------------~~~~l~~---------- 340 (476)
T 3gee_A 313 ADLILYLLDLGTERLDDE-LTE-----------------------------------------IRELKAA---------- 340 (476)
T ss_dssp CSEEEEEEETTTCSSGGG-HHH-----------------------------------------HHHHHHH----------
T ss_pred CCEEEEEEECCCCcchhh-hHH-----------------------------------------HHHHHHh----------
Confidence 999999999865432110 000 0111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH--HHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--KLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~--~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ..|+++|+||+|+......+ .+.+ +.+++++||++|.|+++|.+.|.+.+.
T Consensus 341 ------------l~----~~piIvV~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 341 ------------HP----AAKFLTVANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp ------------CT----TSEEEEEEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred ------------cC----CCCEEEEEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence 11 37999999999998654332 2332 467899999999999999999988774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-19 Score=181.15 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=54.9
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHH---HhcccC-cEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYKIHN-AEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~---~l~~~~-~~i~ 218 (317)
...+.|..+++ ..++++.+|||||+||++|| +++||||++||+.....+++ .+...+ |+|+
T Consensus 522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~ 601 (670)
T 3ux8_A 522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 601 (670)
T ss_dssp HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEE
Confidence 45567778887 35788999999999999887 78999999999988655544 444334 9999
Q ss_pred ecCCCChhh
Q 021103 219 FREDATVDD 227 (317)
Q Consensus 219 ~shd~~~~~ 227 (317)
+|||.....
T Consensus 602 vtHd~~~~~ 610 (670)
T 3ux8_A 602 IEHNLDVIK 610 (670)
T ss_dssp ECCCHHHHT
T ss_pred EeCCHHHHH
Confidence 999976443
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=99.76 E-value=8.1e-18 Score=160.33 Aligned_cols=155 Identities=23% Similarity=0.307 Sum_probs=102.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC---ch--hHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG---KG--RGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~~--~~~~~~~ 135 (317)
..+++|+|+||||||||+|+|+|.... ++++|+||+++..|.+.++|.++.++||+|+....... .. .......
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~ 259 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 259 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHH
Confidence 458999999999999999999998764 89999999999999999999999999999985322110 00 0112234
Q ss_pred hhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 136 VSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
.+..+|++++++|+....... ..+...+.
T Consensus 260 ~i~~ad~vllv~d~~~~~~~~~~~i~~~l~-------------------------------------------------- 289 (439)
T 1mky_A 260 SIEKADVVVIVLDATQGITRQDQRMAGLME-------------------------------------------------- 289 (439)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHH--------------------------------------------------
T ss_pred HHhhCCEEEEEEeCCCCCCHHHHHHHHHHH--------------------------------------------------
Confidence 556789999988875432111 11111111
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HH----HH----h--cCCCeEEEeccccccHHHHHHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VD----KL----A--RQPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~----~l----~--~~~~~v~iSa~~~~~i~~l~~~ 282 (317)
...+|+++|+||+|+..... .+ .+ . .+.+++++||++|.|+++|.+.
T Consensus 290 ---------------------~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~ 348 (439)
T 1mky_A 290 ---------------------RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 348 (439)
T ss_dssp ---------------------HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred ---------------------HcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHH
Confidence 12479999999999975322 11 11 1 2357899999999999999999
Q ss_pred HHHHh
Q 021103 283 MWEEM 287 (317)
Q Consensus 283 i~~~l 287 (317)
+.+.+
T Consensus 349 i~~~~ 353 (439)
T 1mky_A 349 MNLAY 353 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 97765
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-19 Score=184.09 Aligned_cols=149 Identities=11% Similarity=0.128 Sum_probs=96.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|++++|+|+||||||||+++|+|-.. ...+.. . ..+.+++. . +...+.. ... +.+
T Consensus 452 ~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i--~g~~~~-~--~~~~~~v~-q-----~~~~~~~----~lt-v~e 515 (986)
T 2iw3_A 452 NKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQ-E--ECRTVYVE-H-----DIDGTHS----DTS-VLD 515 (986)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCS--TTCCCT-T--TSCEEETT-C-----CCCCCCT----TSB-HHH
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCccc-c--ceeEEEEc-c-----ccccccc----CCc-HHH
Confidence 46788899999999999999999999999995221 111100 0 00111110 0 0001100 000 111
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.... . .... .+++.+.|+.+|+ ..++++.+|||||+||+.|| +++||||++||+
T Consensus 516 ~l~~-~----------~~~~---~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 516 FVFE-S----------GVGT---KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp HHHT-T----------CSSC---HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred HHHH-h----------hcCH---HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 1110 0 0011 4567889999998 46889999999999999998 999999999999
Q ss_pred HHHHHHHHHhcccC-cEEEecCCCC-hhhHHHH
Q 021103 201 KLCYQILHEYKIHN-AEVLFREDAT-VDDLIDV 231 (317)
Q Consensus 201 ~~~~~~l~~l~~~~-~~i~~shd~~-~~~~~~~ 231 (317)
.....+++.+...+ ++|++|||.. +.+++|+
T Consensus 582 ~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adr 614 (986)
T 2iw3_A 582 VNVAWLVNYLNTCGITSITISHDSVFLDNVCEY 614 (986)
T ss_dssp HHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSE
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCE
Confidence 99777777665444 9999999944 4455554
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=145.67 Aligned_cols=162 Identities=26% Similarity=0.360 Sum_probs=113.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHH-hhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVI-AVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~-~~~~~ 139 (317)
..+++++|+||||||||+|.|+|....++++|++|.++..+.+..++..+.++||||+......... ...+.. .....
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 246 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALRYL 246 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHHhc
Confidence 4689999999999999999999988668889999999999999888899999999998653221111 111222 22335
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+... .++|.+....++..+.
T Consensus 247 ad~illV~D~s~~-------------------------------------------~~~~~~~~~~~~~~i~-------- 275 (357)
T 2e87_A 247 GNLIIYIFDPSEH-------------------------------------------CGFPLEEQIHLFEEVH-------- 275 (357)
T ss_dssp CSEEEEEECTTCT-------------------------------------------TSSCHHHHHHHHHHHH--------
T ss_pred CCEEEEEEeCCcc-------------------------------------------ccCCHHHHHHHHHHHH--------
Confidence 7888888886432 2223333223322221
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh-----cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA-----RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~-----~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .. ...|+++|+||+|+.....++... ...+++.+||++|.|+++|.+.|.+.+.
T Consensus 276 ----------~-~~---~~~piilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 276 ----------G-EF---KDLPFLVVINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp ----------H-HT---TTSCEEEEECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHH
T ss_pred ----------H-hc---CCCCEEEEEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHH
Confidence 0 00 147999999999998765443221 2346889999999999999999988763
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.6e-18 Score=151.38 Aligned_cols=152 Identities=24% Similarity=0.357 Sum_probs=106.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc--hhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK--GRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~--~~~~~~~~~~~~~ 140 (317)
.+|+|+|+||||||||+|+|+|....++++||+|++...|.+.. +..+.++||||......... .....++ ....+
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~-~~~~~ 81 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYL-LSQRA 81 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHH-HTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHH-hcCCC
Confidence 47999999999999999999998878999999999999998876 78899999999865322111 1111111 12469
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|+...... ..+...
T Consensus 82 d~vi~V~D~t~~e~~----~~~~~~------------------------------------------------------- 102 (272)
T 3b1v_A 82 DSILNVVDATNLERN----LYLTTQ------------------------------------------------------- 102 (272)
T ss_dssp SEEEEEEEGGGHHHH----HHHHHH-------------------------------------------------------
T ss_pred CEEEEEecCCchHhH----HHHHHH-------------------------------------------------------
Confidence 999999987542111 100000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||++|.|++++.+.|.+.+.
T Consensus 103 -----------l~--~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 103 -----------LI--ETGIPVTIALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp -----------HH--HTCSCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred -----------HH--hcCCCEEEEEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence 00 0147999999999986321 2222222 246899999999999999999988653
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=147.64 Aligned_cols=154 Identities=26% Similarity=0.310 Sum_probs=110.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d 141 (317)
.+|+|+|.+|||||||+|.|+|....++++||+|++...|.+.+.+..+.++||||........... ....+.....+|
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d 85 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDAD 85 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCC
Confidence 4799999999999999999999887789999999999999999999999999999986543221110 111111225789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+............
T Consensus 86 ~ii~V~D~t~~~~~~~~~~~------------------------------------------------------------ 105 (258)
T 3a1s_A 86 LVILVADSVNPEQSLYLLLE------------------------------------------------------------ 105 (258)
T ss_dssp EEEEEEETTSCHHHHHHHHH------------------------------------------------------------
T ss_pred EEEEEeCCCchhhHHHHHHH------------------------------------------------------------
Confidence 99999998754221111000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+.... +.+.+.+ ..+++++||+++.|+++|.+.|.+.+.
T Consensus 106 ----------l~--~~~~pvilv~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 106 ----------IL--EMEKKVILAMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp ----------HH--TTTCCEEEEEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------HH--hcCCCEEEEEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence 00 0147999999999986321 1223322 246899999999999999999988653
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=157.94 Aligned_cols=156 Identities=22% Similarity=0.285 Sum_probs=107.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~ 139 (317)
+.+|+|+|++|||||||+|.|+|... .++++|+||++.....+.++|.++.++||||+.+........ .......+..
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~ 303 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIGVERSRQAANT 303 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC--------------------CCCCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHHHHHHhhhhhc
Confidence 56799999999999999999999864 488999999999999999999999999999985422111100 1223345677
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|++++++|...+..... .+ +++.
T Consensus 304 aD~vl~VvD~s~~~~~~~--~~--------------------------------------------i~~~---------- 327 (462)
T 3geh_A 304 ADLVLLTIDAATGWTTGD--QE--------------------------------------------IYEQ---------- 327 (462)
T ss_dssp CSEEEEEEETTTCSCHHH--HH--------------------------------------------HHHH----------
T ss_pred CCEEEEEeccCCCCCHHH--HH--------------------------------------------HHHh----------
Confidence 999999999765422111 11 1111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l---~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
+. ..|+++|+||+|+........+ ....+.+.+||+++.|+++|.+.|.+.+..
T Consensus 328 ------------l~----~~piivV~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~ 384 (462)
T 3geh_A 328 ------------VK----HRPLILVMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT 384 (462)
T ss_dssp ------------HT----TSCEEEEEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred ------------cc----CCcEEEEEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 11 2699999999999876543322 233568999999999999999999988753
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.4e-17 Score=131.26 Aligned_cols=154 Identities=22% Similarity=0.290 Sum_probs=102.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
.+++++|++|+|||||+|.+.+.... +++++++|.+.....+.+++..+.++||||..................++.+|
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAE 81 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCC
Confidence 37899999999999999999987754 78899999999999999999999999999975432111111222334567899
Q ss_pred EEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
.+++++|....... ...+..++..
T Consensus 82 ~~i~v~d~~~~~~~~~~~~~~~~~~------------------------------------------------------- 106 (161)
T 2dyk_A 82 VVLFAVDGRAELTQADYEVAEYLRR------------------------------------------------------- 106 (161)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHH-------------------------------------------------------
T ss_pred EEEEEEECCCcccHhHHHHHHHHHh-------------------------------------------------------
Confidence 99999987653221 1111111100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
...|+++|.||+|+.... +...+.+ ....+.+||+++.|++++.+.+.+.+
T Consensus 107 ----------------~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 107 ----------------KGKPVILVATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp ----------------HTCCEEEEEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred ----------------cCCCEEEEEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence 147999999999997542 2223322 23679999999999999999998765
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=147.21 Aligned_cols=155 Identities=19% Similarity=0.297 Sum_probs=111.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+|+|+|++|||||||+|+|+|....++++|++|.+...+.+.+++..+.++||||.......... ...........+|
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d 83 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGNAD 83 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccCCc
Confidence 479999999999999999999998888999999999999999999999999999998653322211 1111222336799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++|+.............+
T Consensus 84 ~vi~v~D~~~~~~~~~~~~~~~---------------------------------------------------------- 105 (271)
T 3k53_A 84 VIVDIVDSTCLMRNLFLTLELF---------------------------------------------------------- 105 (271)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHH----------------------------------------------------------
T ss_pred EEEEEecCCcchhhHHHHHHHH----------------------------------------------------------
Confidence 9999998764321111100000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ....|+++|+||+|+.... ....+.+ ..+++++||.++.|++++.+.+.+.+.
T Consensus 106 ------------~-~~~~p~ilv~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 106 ------------E-MEVKNIILVLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAE 165 (271)
T ss_dssp ------------H-TTCCSEEEEEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------h-cCCCCEEEEEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 0 0127999999999976432 1222222 256899999999999999999988763
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=136.30 Aligned_cols=156 Identities=25% Similarity=0.297 Sum_probs=108.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~~d 141 (317)
.+++|+|++|||||||+|.|+|....++++|++|.++..+.+.+++..+.++||||.......... ...........++
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 87 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPD 87 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhccCCC
Confidence 479999999999999999999987678889999999999999999999999999997543211100 0111111113588
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..... ....++..
T Consensus 88 ~~i~v~d~~~~~----~~~~~~~~-------------------------------------------------------- 107 (188)
T 2wjg_A 88 LVVNIVDATALE----RNLYLTLQ-------------------------------------------------------- 107 (188)
T ss_dssp EEEEEEEGGGHH----HHHHHHHH--------------------------------------------------------
T ss_pred EEEEEecchhHH----HHHHHHHH--------------------------------------------------------
Confidence 888888865321 11111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
+. ....|+++|.||+|+.... ..+.+.+ ....+++||+++.|++++.+.|.+.+...
T Consensus 108 ----------~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 108 ----------LM--EMGANLLLALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK 170 (188)
T ss_dssp ----------HH--TTTCCEEEEEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred ----------HH--hcCCCEEEEEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 00 0147899999999986432 2233322 24688999999999999999998887643
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.3e-17 Score=138.65 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=107.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEE-ECCeeEEEecCCCccccccCCc------hhHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIH-YNDTKIQLLDLPGIIEGASEGK------GRGRQ 132 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~-~~g~~i~~~d~~g~~~~~~~~~------~~~~~ 132 (317)
..+|+|+|.+|||||||+|.|+|.. ..++++|++|.+.....+. .++..+.++||||+........ .....
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 108 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS 108 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence 4689999999999999999999986 3588999999998766665 5578899999999754321111 11112
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
++.....+|.+++++|......... .. ++..
T Consensus 109 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~--------------------------------------------~~~~--- 139 (223)
T 4dhe_A 109 YLQTRPQLCGMILMMDARRPLTELD--RR--------------------------------------------MIEW--- 139 (223)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHH--HH--------------------------------------------HHHH---
T ss_pred HHhcCcCcCEEEEEEeCCCCCCHHH--HH--------------------------------------------HHHH---
Confidence 2333344788999998764322111 00 1111
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH--------HHhc--------CCCeEEEeccccccH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD--------KLAR--------QPNSVVISCNLKLNL 276 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~--------~l~~--------~~~~v~iSa~~~~~i 276 (317)
+. ....|+++|+||+|+....... .+.. ...++++||+++.|+
T Consensus 140 -------------------l~--~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv 198 (223)
T 4dhe_A 140 -------------------FA--PTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGL 198 (223)
T ss_dssp -------------------HG--GGCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSH
T ss_pred -------------------HH--hcCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCH
Confidence 11 0247999999999998754321 1222 235788999999999
Q ss_pred HHHHHHHHHHhCe
Q 021103 277 DRLLARMWEEMGL 289 (317)
Q Consensus 277 ~~l~~~i~~~l~~ 289 (317)
++|.+.|.+.+..
T Consensus 199 ~~l~~~l~~~~~~ 211 (223)
T 4dhe_A 199 DDAHALIESWLRP 211 (223)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHhcCc
Confidence 9999999998764
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-17 Score=155.97 Aligned_cols=155 Identities=21% Similarity=0.232 Sum_probs=96.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC-chhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG-KGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~-~~~~~~~~~~~~~~ 140 (317)
.+|+|+|+||+|||||+|.|+|.... ++++||+|++...+.+.++|..+.++||||+......- ..+..+....++.+
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~a 83 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA 83 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhC
Confidence 47999999999999999999998754 88999999999999999999999999999985321110 01223344466789
Q ss_pred cEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|++++++|+....... ..+.+.|
T Consensus 84 d~il~vvD~~~~~~~~d~~~~~~l-------------------------------------------------------- 107 (436)
T 2hjg_A 84 DVIIFMVNGREGVTAADEEVAKIL-------------------------------------------------------- 107 (436)
T ss_dssp SEEEEEEETTTCSCHHHHHHHHHH--------------------------------------------------------
T ss_pred CEEEEEEeCCCCCCHHHHHHHHHH--------------------------------------------------------
Confidence 9999999986532211 1111111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. +..+|+++|+||+|+.... ....+. ....++++||.+|.|+++|.+.+.+.+.
T Consensus 108 -------------~--~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 164 (436)
T 2hjg_A 108 -------------Y--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 164 (436)
T ss_dssp -------------T--TCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred -------------H--HcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence 1 1257999999999987532 111222 2346899999999999999999998875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.8e-17 Score=147.94 Aligned_cols=147 Identities=13% Similarity=0.080 Sum_probs=77.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh---ccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS---KSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~---~~~ 140 (317)
.+||+||||||||||+|+|+|...+ .+|.+.++|.++.. +. .....++..|..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~-----------~~G~i~~~g~~i~~--~~-----~~~~i~~v~q~~~~~~~ltv~ 65 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS-----------RKASSWNREEKIPK--TV-----EIKAIGHVIEEGGVKMKLTVI 65 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------------CCC--CC-----SCCEEEESCC----CCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC-----------CCCccccCCcccCc--ce-----eeeeeEEEeecCCCcCCceEE
Confidence 6899999999999999999999987 78888887765410 00 111122222222111 112
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE------eeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS------FNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia------lilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
|.+.+...... ....+.+.+++.. -..+..+.+||+||+||+.+| +++|||+.+||+.. .++++.+..
T Consensus 66 d~~~~g~~~~~-~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~~-- 139 (270)
T 3sop_A 66 DTPGFGDQINN-ENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLSK-- 139 (270)
T ss_dssp CCCC--CCSBC-TTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHHT--
T ss_pred echhhhhhccc-HHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHHh--
Confidence 22222111111 1111122222221 023445678999999999877 88999999999876 334443321
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
..++|+|+||+|....++..
T Consensus 140 -----------------------~~~vI~Vi~K~D~lt~~e~~ 159 (270)
T 3sop_A 140 -----------------------VVNIIPVIAKADTMTLEEKS 159 (270)
T ss_dssp -----------------------TSEEEEEETTGGGSCHHHHH
T ss_pred -----------------------cCcEEEEEeccccCCHHHHH
Confidence 16789999999999876543
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.4e-17 Score=168.09 Aligned_cols=70 Identities=11% Similarity=0.112 Sum_probs=56.4
Q ss_pred HHHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHhc---c-cCcEE
Q 021103 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEYK---I-HNAEV 217 (317)
Q Consensus 157 ~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l~---~-~~~~i 217 (317)
....+.|+.+|+ .+.+++.+|||||+||+.|| +++||||++||+.....+++.+. . ..|+|
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 345678888998 46789999999999999887 89999999999998666655543 3 34999
Q ss_pred EecCCCChh
Q 021103 218 LFREDATVD 226 (317)
Q Consensus 218 ~~shd~~~~ 226 (317)
+++||.++.
T Consensus 863 vI~HdL~~i 871 (916)
T 3pih_A 863 VIEHNLDVI 871 (916)
T ss_dssp EECCCHHHH
T ss_pred EEeCCHHHH
Confidence 999996543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-16 Score=148.70 Aligned_cols=155 Identities=19% Similarity=0.246 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--ch--hHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KG--RGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~--~~~~~~~~ 136 (317)
..+++++|.+|+|||||+|.|+|... .++++|+||++...+.+.++|..+.++||||+.+..... .. ........
T Consensus 195 ~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~ 274 (456)
T 4dcu_A 195 VIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKA 274 (456)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHH
T ss_pred cceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHHHHH
Confidence 56899999999999999999998864 489999999999999999999999999999986533211 11 11223345
Q ss_pred hccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 SKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
++.+|++++++|+....... ..+..++
T Consensus 275 ~~~ad~~llviD~~~~~~~~~~~~~~~~---------------------------------------------------- 302 (456)
T 4dcu_A 275 IDRSEVVAVVLDGEEGIIEQDKRIAGYA---------------------------------------------------- 302 (456)
T ss_dssp HHHCSEEEEEEETTTCCCHHHHHHHHHH----------------------------------------------------
T ss_pred HhhCCEEEEEEeCCCCcCHHHHHHHHHH----------------------------------------------------
Confidence 67799999999986532211 1111110
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHH-HHh------cCCCeEEEeccccccHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVD-KLA------RQPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~-~l~------~~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ...+|+++|+||+|+.... +.. .+. .+.+++++||++|.|++++.+.+
T Consensus 303 -----------------~--~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i 363 (456)
T 4dcu_A 303 -----------------H--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAI 363 (456)
T ss_dssp -----------------H--HTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHH
T ss_pred -----------------H--HcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHH
Confidence 0 0247999999999998532 111 121 24678999999999999999998
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 364 ~~~~ 367 (456)
T 4dcu_A 364 IKAS 367 (456)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-15 Score=130.96 Aligned_cols=163 Identities=20% Similarity=0.301 Sum_probs=104.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-h-HHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-R-GRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~-~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.|++....+++++++|++...+.+.+++..+.++||||.......... . ..........
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHI 108 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHHHhhcc
Confidence 3589999999999999999999987667789999999999988888999999999998542211110 0 1111223566
Q ss_pred CcEEEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|.+++++|...... ...... .++..+
T Consensus 109 ~d~~i~v~d~~~~~s~~~~~~~--------------------------------------------~~~~~l-------- 136 (228)
T 2qu8_A 109 NGVILFIIDISEQCGLTIKEQI--------------------------------------------NLFYSI-------- 136 (228)
T ss_dssp SEEEEEEEETTCTTSSCHHHHH--------------------------------------------HHHHHH--------
T ss_pred ccEEEEEEecccccCcchHHHH--------------------------------------------HHHHHH--------
Confidence 789999998764321 100001 111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--------HHHHhc-C---CCeEEEeccccccHHHHHHHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--------VDKLAR-Q---PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--------~~~l~~-~---~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......|+++|+||+|+..... ...+.. . ...+.+||++|.|++++.+.|.+.
T Consensus 137 --------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~ 202 (228)
T 2qu8_A 137 --------------KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACEL 202 (228)
T ss_dssp --------------HTCC-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHH
T ss_pred --------------HHhhcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHH
Confidence 11111479999999999975422 122222 2 357889999999999999999887
Q ss_pred hCee
Q 021103 287 MGLV 290 (317)
Q Consensus 287 l~~~ 290 (317)
+...
T Consensus 203 i~~~ 206 (228)
T 2qu8_A 203 LKND 206 (228)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=149.16 Aligned_cols=156 Identities=19% Similarity=0.253 Sum_probs=103.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccC--Cchh--HHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE--GKGR--GRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~--~~~~--~~~~~~~~ 137 (317)
.+++|+|.+|+|||||+|.|+|.... ++++|+||++...+.+.++|..+.++||||+.+.... .... .......+
T Consensus 176 ~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~ 255 (436)
T 2hjg_A 176 IQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAI 255 (436)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHHHHHH
Confidence 58999999999999999999998764 8999999999999999999999999999998643321 1111 11223456
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
+.+|++++++|+......... .++..
T Consensus 256 ~~ad~~llv~D~~~~~s~~~~--~~~~~---------------------------------------------------- 281 (436)
T 2hjg_A 256 DRSEVVAVVLDGEEGIIEQDK--RIAGY---------------------------------------------------- 281 (436)
T ss_dssp HHCSEEEEEEETTTCCCHHHH--HHHHH----------------------------------------------------
T ss_pred HhCCEEEEEEcCCcCCcHHHH--HHHHH----------------------------------------------------
Confidence 779999999998654321110 11100
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----H-HHHh------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----V-DKLA------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~-~~l~------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
+. ....|+++|+||+|+..... . +.+. .+.+.+++||++|.|++++.+.+.+
T Consensus 282 --------------~~--~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~ 345 (436)
T 2hjg_A 282 --------------AH--EAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIK 345 (436)
T ss_dssp --------------HH--HTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHH
T ss_pred --------------HH--HcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHH
Confidence 00 12479999999999985322 1 1111 2457899999999999999988876
Q ss_pred HhC
Q 021103 286 EMG 288 (317)
Q Consensus 286 ~l~ 288 (317)
.+.
T Consensus 346 ~~~ 348 (436)
T 2hjg_A 346 ASE 348 (436)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-16 Score=151.54 Aligned_cols=156 Identities=21% Similarity=0.226 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCc-hhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGK-GRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~-~~~~~~~~~~~~ 139 (317)
-.+|+|+|++|||||||+|.|+|.... +.++||+|++...+.+.+.+..+.++||||+........ ....+....++.
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ 102 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 102 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhh
Confidence 358999999999999999999998754 889999999999999999999999999999863211111 112234445678
Q ss_pred CcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|++++++|+...... ...+.++|
T Consensus 103 ad~il~VvD~~~~~~~~d~~l~~~l------------------------------------------------------- 127 (456)
T 4dcu_A 103 ADVIIFMVNGREGVTAADEEVAKIL------------------------------------------------------- 127 (456)
T ss_dssp CSEEEEEEESSSCSCHHHHHHHHHH-------------------------------------------------------
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHH-------------------------------------------------------
Confidence 9999999997643221 11111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHH--hcCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL--ARQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ...+|+++|+||+|+..... .... ..+...+++||.+|.|+++|.+.+.+.+.
T Consensus 128 --------------~--~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~ 184 (456)
T 4dcu_A 128 --------------Y--RTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK 184 (456)
T ss_dssp --------------T--TCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred --------------H--HcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcc
Confidence 1 12579999999999875421 1111 22456789999999999999999988764
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-17 Score=168.50 Aligned_cols=72 Identities=14% Similarity=0.097 Sum_probs=57.1
Q ss_pred HHHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEE
Q 021103 157 QILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEV 217 (317)
Q Consensus 157 ~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i 217 (317)
..+.++|+.+++ .+++++..|||||+||+.|| +++||||+|||+.....+++ .+... .++|
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 356788999999 35889999999999999888 79999999999988665544 44433 4999
Q ss_pred EecCCCChhhH
Q 021103 218 LFREDATVDDL 228 (317)
Q Consensus 218 ~~shd~~~~~~ 228 (317)
++|||.++...
T Consensus 788 visHdl~~i~~ 798 (842)
T 2vf7_A 788 AVEHKMQVVAA 798 (842)
T ss_dssp EECCCHHHHTT
T ss_pred EEcCCHHHHHh
Confidence 99999654443
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.8e-15 Score=123.96 Aligned_cols=150 Identities=22% Similarity=0.199 Sum_probs=106.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.......+|++|.+.....+.+++..+.++||||....... ....+..+|
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d 80 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTM-------RARGAQVTD 80 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCS-------CCSSCCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHH-------HHHHHhhCC
Confidence 5689999999999999999999987666778888888888889999999999999996432111 112346789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|........ . .+.+ ..
T Consensus 81 ~~i~v~d~~~~~~~~-~-~~~l--------------------------------------------~~------------ 102 (178)
T 2lkc_A 81 IVILVVAADDGVMPQ-T-VEAI--------------------------------------------NH------------ 102 (178)
T ss_dssp EEEEEEETTCCCCHH-H-HHHH--------------------------------------------HH------------
T ss_pred EEEEEEECCCCCcHH-H-HHHH--------------------------------------------HH------------
Confidence 999999865431110 0 0111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh--hhHH-HHhc-------C---CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--DDVD-KLAR-------Q---PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--~~~~-~l~~-------~---~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
+. ....|+++|+||+|+... +... .+.. + ...+.+||+++.|++++.+.|.+.+.
T Consensus 103 ----------~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 170 (178)
T 2lkc_A 103 ----------AK--AANVPIIVAINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSE 170 (178)
T ss_dssp ----------HG--GGSCCEEEEEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred ----------HH--hCCCCEEEEEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhh
Confidence 00 124799999999999853 2222 2211 1 25788999999999999999987654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-17 Score=157.11 Aligned_cols=101 Identities=22% Similarity=0.164 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE---------------EEecCCCccccccCCch
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI---------------QLLDLPGIIEGASEGKG 128 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i---------------~~~d~~g~~~~~~~~~~ 128 (317)
.+||+|+||||||||+|+|+|...+ .+|.+.++|.++ .+.|++|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p-----------~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~------- 132 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNE-----------EEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS------- 132 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTT-----------STTSCCCCC----CCCEEEECSSCTTEEEEECCCGGG-------
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCc-----------cCceEEECCeecceeEEeccccccCCeeehHhhcccc-------
Confidence 9999999999999999999999877 555555555432 2222222110
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCccccc--ceeeeeeE-----------------
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFK--KKKTGGIS----------------- 188 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g--~~qr~~ia----------------- 188 (317)
....+.++|+.+++ ..+..+. ||+| |+||+.++
T Consensus 133 --------------------------~~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkp 185 (413)
T 1tq4_A 133 --------------------------TNFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKV 185 (413)
T ss_dssp --------------------------SSCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred --------------------------hHHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecC
Confidence 01235566777776 3333333 8888 88887765
Q ss_pred --eeecCCCCCCCHHHHHHHHHH
Q 021103 189 --FNSTLPLTHVDEKLCYQILHE 209 (317)
Q Consensus 189 --lilDEPt~~LD~~~~~~~l~~ 209 (317)
+++||||++||+.....+++.
T Consensus 186 dlllLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 186 DSDITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp HHHHHHHHTTCCTTCCHHHHHHH
T ss_pred cccccCcccccCCHHHHHHHHHH
Confidence 588999999998765555543
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-15 Score=123.12 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=104.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.|++........|.+|.+.....+.+++ ..+.++|+||...... .....++.+
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 82 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRT-------ITSTYYRGT 82 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSS-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhh-------hHHHHhccC
Confidence 4799999999999999999998876667778888888888899988 5678899999532211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++..+ .
T Consensus 83 d~~i~v~d~~~~~s-~~~~~~~~~~~--------------------------------------------~--------- 108 (181)
T 3tw8_B 83 HGVIVVYDVTSAES-FVNVKRWLHEI--------------------------------------------N--------- 108 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H---------
Confidence 99999999875422 11222222111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+.... ....+. .....+.+||+++.|++++.+.|.+.+
T Consensus 109 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 169 (181)
T 3tw8_B 109 -------------QNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELV 169 (181)
T ss_dssp -------------HHCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 011247999999999987432 222222 134788999999999999999998765
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.5e-15 Score=126.03 Aligned_cols=153 Identities=18% Similarity=0.191 Sum_probs=100.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC-CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch------hHHHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG------RGRQVI 134 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~-~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~------~~~~~~ 134 (317)
..+++|+|++|||||||+|.|++.. ..+++.+++|.+..... . +.++.++||||+......... ......
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYL--V-NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYF 99 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEE--E-TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEE--E-CCcEEEEECCCCccccCChhhHHHHHHHHHHHH
Confidence 4589999999999999999999986 34778889988875432 2 457889999997432211100 011122
Q ss_pred hhhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhccc
Q 021103 135 AVSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~ 213 (317)
.....++++++++|........ ..+..++..
T Consensus 100 ~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~------------------------------------------------ 131 (195)
T 3pqc_A 100 KNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS------------------------------------------------ 131 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH------------------------------------------------
T ss_pred hcCcCceEEEEEecCCCCCCHHHHHHHHHHHH------------------------------------------------
Confidence 2233458888888875432111 111111110
Q ss_pred CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------HHhc---CCCeEEEeccccccHHHHHHHH
Q 021103 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLAR---QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 214 ~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~l~~---~~~~v~iSa~~~~~i~~l~~~i 283 (317)
...|+++|+||+|+...+... .... ....+.+||+++.|++++.+.|
T Consensus 132 -----------------------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 188 (195)
T 3pqc_A 132 -----------------------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLI 188 (195)
T ss_dssp -----------------------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHH
T ss_pred -----------------------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHH
Confidence 147999999999998654322 1222 2468999999999999999999
Q ss_pred HHHhC
Q 021103 284 WEEMG 288 (317)
Q Consensus 284 ~~~l~ 288 (317)
.+.+.
T Consensus 189 ~~~l~ 193 (195)
T 3pqc_A 189 STLLK 193 (195)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 88764
|
| >3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=147.13 Aligned_cols=156 Identities=21% Similarity=0.240 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCe-eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDT-KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~-~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-.+++|+|.+|+|||||+|+|++... .++++++||.++....+.+.+. ++.++||||+.+....+..........+..
T Consensus 34 ~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~ 113 (423)
T 3qq5_A 34 RRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARRVFYR 113 (423)
T ss_dssp CEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHHHHTS
T ss_pred CEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHHHHhc
Confidence 35899999999999999999999875 4789999999999999999876 899999999865433322333445566788
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|+... .....+...+..
T Consensus 114 aD~vllVvD~~~~-~~~~~~l~~l~~------------------------------------------------------ 138 (423)
T 3qq5_A 114 ADCGILVTDSAPT-PYEDDVVNLFKE------------------------------------------------------ 138 (423)
T ss_dssp CSEEEEECSSSCC-HHHHHHHHHHHH------------------------------------------------------
T ss_pred CCEEEEEEeCCCh-HHHHHHHHHHHh------------------------------------------------------
Confidence 9999999987222 111111111110
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH---HHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV---DKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~---~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
...|+++|+||+|+...... +.+.+ ...++.+||++|.|++++.+.|.+.+..
T Consensus 139 -----------------~~~piIvV~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 139 -----------------MEIPFVVVVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG 196 (423)
T ss_dssp -----------------TTCCEEEECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred -----------------cCCCEEEEEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 14799999999999865432 23322 2357889999999999999999998854
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.9e-19 Score=168.98 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=86.7
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeE-E-EEECCeeEEEecCCCccccccCCchhHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPG-I-IHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G-~-i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
+++.+..|++++|+||||||||||+++|+|...+ ..| . |.++|.. ....++.+|
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-----------~~G~~pI~vdg~~-------------~~~i~~vpq 186 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALK-----------FNAYQPLYINLDP-------------QQPIFTVPG 186 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHH-----------HHCCCCEEEECCT-------------TSCSSSCSS
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcccc-----------cCCceeEEEcCCc-------------cCCeeeecc
Confidence 4445556899999999999999999999999887 788 7 8886621 011111111
Q ss_pred HHhh------hccCcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---------------ee
Q 021103 133 VIAV------SKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------------FN 190 (317)
Q Consensus 133 ~~~~------~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia---------------li 190 (317)
.... +...+.+ +.............+.++++.+|+ .... +.+||+||+||+++| ++
T Consensus 187 ~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p~i~~sGLl 264 (460)
T 2npi_A 187 CISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDPQVRRSGCI 264 (460)
T ss_dssp CCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEE
T ss_pred chhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCcccCcceEE
Confidence 1100 0111111 111100000001123344566666 2222 889999999999775 88
Q ss_pred ecC-CCCCCCHHHHHHHHHHhcc-cCcEEEecCCCC
Q 021103 191 STL-PLTHVDEKLCYQILHEYKI-HNAEVLFREDAT 224 (317)
Q Consensus 191 lDE-Pt~~LD~~~~~~~l~~l~~-~~~~i~~shd~~ 224 (317)
+|| ||++||+. ...+.+.+.. ..++++++|+..
T Consensus 265 LDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~ 299 (460)
T 2npi_A 265 VDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSET 299 (460)
T ss_dssp EECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSS
T ss_pred EeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCc
Confidence 999 99999987 3333333333 338999999966
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-15 Score=125.76 Aligned_cols=153 Identities=17% Similarity=0.174 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh----HHHH
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR----GRQV 133 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~----~~~~ 133 (317)
..+++|+|++|||||||+|.|++.. ..+++.+++|++..... + +..+.++||||+....... ... ....
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 99 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I-NDELHFVDVPGYGFAKVSKSEREAWGRMIETY 99 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E-TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E-CCcEEEEECCCCCccccCHHHHHHHHHHHHHH
Confidence 4689999999999999999999875 34678889998875443 3 3478999999975422110 000 1111
Q ss_pred HhhhccCcEEEEEecCCCchhhHH-HHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQ-ILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~-~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
......+|.+++++|......... .+..++.
T Consensus 100 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~------------------------------------------------ 131 (195)
T 1svi_A 100 ITTREELKAVVQIVDLRHAPSNDDVQMYEFLK------------------------------------------------ 131 (195)
T ss_dssp HHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH------------------------------------------------
T ss_pred HhhhhcCCEEEEEEECCCCCCHHHHHHHHHHH------------------------------------------------
Confidence 112223488899988764322111 1111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh----c--CCCeEEEeccccccHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA----R--QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~----~--~~~~v~iSa~~~~~i~~l~~~ 282 (317)
....|+++|+||+|+....... .+. . ....+.+||+++.|++++.+.
T Consensus 132 -----------------------~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 188 (195)
T 1svi_A 132 -----------------------YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGA 188 (195)
T ss_dssp -----------------------HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHH
T ss_pred -----------------------HcCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHH
Confidence 0147999999999998754332 221 1 235788999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.+.
T Consensus 189 l~~~l~ 194 (195)
T 1svi_A 189 IKKMIN 194 (195)
T ss_dssp HHHHHT
T ss_pred HHHHhc
Confidence 987664
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=150.23 Aligned_cols=51 Identities=2% Similarity=-0.152 Sum_probs=41.4
Q ss_pred ccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhh
Q 021103 177 IYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDD 227 (317)
Q Consensus 177 LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~ 227 (317)
|||||+||+.|| |++||||++||+.....+++.+. ...++|++||+..+.+
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~ 360 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA 360 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHh
Confidence 699999999887 78999999999998766665554 3359999999965544
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=4.6e-18 Score=141.49 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=41.6
Q ss_pred cCCcccccceeeeeeE---------eeecCCCCCCCHH----------------HHHHHHHHh---cccC-cEEEecCCC
Q 021103 173 RPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----------------LCYQILHEY---KIHN-AEVLFREDA 223 (317)
Q Consensus 173 ~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~----------------~~~~~l~~l---~~~~-~~i~~shd~ 223 (317)
.....|+|++||+.+| +++||||++||+. ....+.+.+ ...+ ++|++|||.
T Consensus 80 ~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 80 ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 3455699999999988 8999999999998 435555544 3334 999999996
Q ss_pred Chhh
Q 021103 224 TVDD 227 (317)
Q Consensus 224 ~~~~ 227 (317)
+..+
T Consensus 160 ~~~~ 163 (171)
T 4gp7_A 160 EEVE 163 (171)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5443
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=4.7e-15 Score=129.55 Aligned_cols=90 Identities=19% Similarity=0.328 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccc--cceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH----HHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE--FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ----VIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p--~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~----~~~ 135 (317)
..+|+|+|++|||||||+|+|+|.....+.+| ++|.++..+.+.++|..+.++||||+............. ...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~ 108 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIRCILL 108 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHHHHHh
Confidence 35899999999999999999999988777777 889999999999999999999999987643322111111 122
Q ss_pred hhccCcEEEEEecCCC
Q 021103 136 VSKSSDIVLMVLDASK 151 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~ 151 (317)
..+.+++++++++...
T Consensus 109 ~~~~~~~~l~v~d~~~ 124 (239)
T 3lxx_A 109 TSPGPHALLLVVPLGR 124 (239)
T ss_dssp TTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEeeCCC
Confidence 3346799999998653
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-14 Score=122.61 Aligned_cols=149 Identities=18% Similarity=0.227 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ ..|..+..+.+.++|..+.++||||...... .....++.+|.
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 93 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKNDRLA--TL-QPTWHPTSEELAIGNIKFTTFDLGGHIQARR-------LWKDYFPEVNG 93 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHSCCC--CC-CCCCSCEEEEEEETTEEEEEEECCCSGGGTT-------SGGGGCTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-ccCCCCCeEEEEECCEEEEEEECCCCHHHHH-------HHHHHHhcCCE
Confidence 48999999999999999999976532 22 2456667889999999999999999643211 11223568999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ ++
T Consensus 94 ~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 118 (190)
T 1m2o_B 94 IVFLVDAADPERF-DEARVELDAL----------------------------------------FN-------------- 118 (190)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEECCChHHH-HHHHHHHHHH----------------------------------------Hc--------------
Confidence 9999998754321 1111111110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC--------------CCeEEEeccccccHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--------------PNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~--------------~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
. ......|+++|.||+|+... +++....+. ...+.+||+++.|++++.+.|.+
T Consensus 119 --------~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 119 --------I--AELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp --------C--GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHT
T ss_pred --------c--hhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHh
Confidence 0 00124799999999999752 333322211 13688999999999999998875
Q ss_pred H
Q 021103 286 E 286 (317)
Q Consensus 286 ~ 286 (317)
.
T Consensus 189 ~ 189 (190)
T 1m2o_B 189 Y 189 (190)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=120.99 Aligned_cols=153 Identities=18% Similarity=0.166 Sum_probs=107.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 89 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR-------TITSSYYRGA 89 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHHhhC
Confidence 47999999999999999999988766677788888888888889884 57889999953211 1123345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ ..
T Consensus 90 d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~----------- 116 (196)
T 3tkl_A 90 HGIIVVYDVTDQES-FNNVKQWLQEI-----------------------------------------DR----------- 116 (196)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHH-----------------------------------------HH-----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999999875322 11111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .....|+++|+||+|+.... ....+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 117 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 117 -----------Y--ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 178 (196)
T ss_dssp -----------H--SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred -----------h--cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 01247999999999997542 2222222 346899999999999999999987764
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=99.62 E-value=6.2e-15 Score=130.37 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=68.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCcccc-ceeeeeeEEEEECCeeEEEecCCCccccccCCchh----HHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR----GRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~-tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~----~~~~~~ 135 (317)
..+|+|+|++|||||||+|.|+|.... .+..|. +|++...+.+.++|..+.++||||+.+........ ......
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~ 101 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRCYLL 101 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999998744 444555 89999999999999999999999987543221111 112223
Q ss_pred hhccCcEEEEEecCCC
Q 021103 136 VSKSSDIVLMVLDASK 151 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~ 151 (317)
.++.+|.+++++++..
T Consensus 102 ~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 102 SAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HTTCCSEEEEEEETTC
T ss_pred cCCCCcEEEEEEeCCC
Confidence 5577999999998764
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-17 Score=139.93 Aligned_cols=129 Identities=15% Similarity=0.017 Sum_probs=70.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..|++++|+||||||||||+++|+|. .| .+|.|.. ..+.. +... .....++.+|..
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-----------~~G~I~~--~~~~~-~~~~----~~~~ig~v~q~~----- 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-AL-----------QSKQVSR--IILTR-PAVE----AGEKLGFLPGTL----- 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HH-----------HTTSCSE--EEEEE-CSCC----TTCCCCSSCC-------
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CC-----------cCCeeee--EEecC-Cchh----hhcceEEecCCH-----
Confidence 34889999999999999999999999 77 5565521 11211 1000 111122222211
Q ss_pred CcEE-EEE---ecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHHH
Q 021103 140 SDIV-LMV---LDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQI 206 (317)
Q Consensus 140 ~d~i-~~v---~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~~ 206 (317)
.+++ .+. .+..........+.++++. ++ ||+||+++| +++||||++ ....+.++
T Consensus 76 ~enl~~~~~~~~~~~~~~~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLDEPts~-~~~~l~~~ 142 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMVEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILDEAQNT-TPAQMKMF 142 (208)
T ss_dssp ----CTTTHHHHHHHTTTSCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEECSGGGC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEeCCccc-cHHHHHHH
Confidence 1111 000 0000000011234444443 32 999999998 999999999 55556677
Q ss_pred HHHhcccC-cEEEecCCCChhh
Q 021103 207 LHEYKIHN-AEVLFREDATVDD 227 (317)
Q Consensus 207 l~~l~~~~-~~i~~shd~~~~~ 227 (317)
+..+ ..+ ++| +|||....+
T Consensus 143 l~~l-~~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 143 LTRL-GFGSKMV-VTGDITQVD 162 (208)
T ss_dssp HTTB-CTTCEEE-EEEC-----
T ss_pred HHHh-cCCCEEE-EECCHHHHh
Confidence 7766 334 777 999966443
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-16 Score=160.93 Aligned_cols=69 Identities=13% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHHHHHHHccc---cccccCCcccccceeeeeeE------------eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEE
Q 021103 158 ILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------------FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVL 218 (317)
Q Consensus 158 ~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------------lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~ 218 (317)
...+.|+.+++ .+++++.+|||||+||+.|| +++||||+|||+.....+++.+ ... .++|+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34578889998 46789999999999999888 7999999999999866655544 333 49999
Q ss_pred ecCCCChh
Q 021103 219 FREDATVD 226 (317)
Q Consensus 219 ~shd~~~~ 226 (317)
+|||.+..
T Consensus 904 isHdl~~i 911 (972)
T 2r6f_A 904 IEHNLDVI 911 (972)
T ss_dssp ECCCHHHH
T ss_pred EcCCHHHH
Confidence 99996543
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.1e-15 Score=123.04 Aligned_cols=158 Identities=15% Similarity=0.189 Sum_probs=102.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|||||||+|.+++....... ...|.......+.+++..+.++||||..... ......+..+|
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSNAQSQN-ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYR-------NLWEHYYKEGQ 92 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGGGCCSS-CCCCSSEEEEEEECSSCEEEEEEECCSTTTG-------GGGGGGGGGCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCCCC-cCCccceeEEEEEECCEEEEEEECCCCHHHH-------HHHHHHHhcCC
Confidence 468999999999999999999987632222 2356667778888889999999999953321 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++.. ++..
T Consensus 93 ~ii~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~------------ 119 (190)
T 2h57_A 93 AIIFVIDSSDRLRM-VVAKEELDT----------------------------------------LLNH------------ 119 (190)
T ss_dssp EEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHS------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHhC------------
Confidence 99999998654211 111111111 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh---c----CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA---R----QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~---~----~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
........|+++|+||+|+... +++.... . ....+.+||+++.|++++.+.|.+.+..+
T Consensus 120 ----------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~ 188 (190)
T 2h57_A 120 ----------PDIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQTV 188 (190)
T ss_dssp ----------TTTTTSCCCEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC---
T ss_pred ----------hhhccCCCeEEEEEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHHh
Confidence 0000025799999999999754 2232222 1 12478899999999999999998877543
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-14 Score=116.30 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=98.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++++|++|+|||||+|.+++.... ...| |.......+.+++..+.++||||.... .......++.+|.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~d~~ 71 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIP--TIGFNVETVEYKNISFTVWDVGGQDKI-------RPLWRHYFQNTQGL 71 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCC--CSSCCEEEEECSSCEEEEEECCCCGGG-------HHHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcC-cccC--cCceeEEEEEECCEEEEEEEcCCChhh-------HHHHHHHhccCCEE
Confidence 6899999999999999999876532 2223 455556677778889999999996431 11222346789999
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
++++|...+..- ..+..++..+ +..
T Consensus 72 i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~~-------------- 96 (164)
T 1r8s_A 72 IFVVDSNDRERV-NEAREELMRM----------------------------------------LAE-------------- 96 (164)
T ss_dssp EEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTC--------------
T ss_pred EEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hhc--------------
Confidence 999998754321 1122221110 000
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|.||+|+.... ++..... ....+.+||+++.|++++.+.|.+.+.
T Consensus 97 ----------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 97 ----------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp ----------GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred ----------hhhcCCeEEEEEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence 001247999999999997642 2221111 113788999999999999999988764
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-14 Score=118.91 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=100.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++++|++|||||||+|.+++.. . ..+. .|.......+.+++..+.++||||..... ......++.+|
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~-~-~~~~-~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 87 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED-V-DTIS-PTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC-C-SSCC-CCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-C-Cccc-ccCccceEEEEECCEEEEEEECCCCHhHH-------HHHHHHhcCCC
Confidence 4689999999999999999999876 2 2222 24445566788889999999999963311 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+..- ..+..++..+ +.
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 113 (186)
T 1ksh_A 88 GLIWVVDSADRQRM-QDCQRELQSL----------------------------------------LV------------- 113 (186)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998754321 1121111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---hc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL---AR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l---~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+......+.+ .. ....+.+||+++.|++++.+.|.+.+.
T Consensus 114 ---------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 179 (186)
T 1ksh_A 114 ---------EE--RLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 179 (186)
T ss_dssp ---------CG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ---------Ch--hcCCCcEEEEEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 00 0124799999999999754322211 11 124788999999999999999988764
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.1e-14 Score=118.49 Aligned_cols=154 Identities=16% Similarity=0.176 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|.++.+.....+.+++. .+.++||||..... ......+..+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 87 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR-------SLIPSYIRDS 87 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGSHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHH-------HHHHHHhcCC
Confidence 47999999999999999999987655555677777887888888885 67889999953211 1122345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 88 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 113 (179)
T 2y8e_A 88 TVAVVVYDITNTNS-FHQTSKWIDD--------------------------------------------VR--------- 113 (179)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865321 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... +..... .....+.+||+++.|++++.+.|.+.+..
T Consensus 114 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 114 ---------TE---RGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp ---------HH---HTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence 00 01247999999999997432 222221 12457889999999999999999887643
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=118.21 Aligned_cols=153 Identities=19% Similarity=0.197 Sum_probs=103.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.|++.. ...+++.||.+.....+.+++.. +.++||||...... .....+..+
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 76 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH-FVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSA-------MRDQYMRTG 76 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS-CCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CT-------THHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHH-------HHHHHHhcC
Confidence 479999999999999999999765 35678888888888888888876 56799999533111 112335668
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ ..
T Consensus 77 ~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~------------ 103 (189)
T 4dsu_A 77 EGFLCVFAINNTKS-FEDIHHYREQI----------------------------------------KR------------ 103 (189)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH----------------------------------------HH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HH------------
Confidence 99999998765422 11121111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+.... ....+.. ....+.+||++|.|++++.+.|.+.+.
T Consensus 104 ----------~~--~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 104 ----------VK--DSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIR 165 (189)
T ss_dssp ----------HT--TCSCCCEEEEEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCcEEEEEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01257999999999997432 2232322 246889999999999999999987764
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.4e-14 Score=122.78 Aligned_cols=150 Identities=16% Similarity=0.183 Sum_probs=95.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+++++|++|||||||++.+++.... .+ ..|..+..+.+.++|..+.++||||...... .....++.+|.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~~~~--~~-~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~d~ 95 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDDRLG--QH-VPTLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAING 95 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC---------CCCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCSE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--cc-CCCCCceeEEEEECCEEEEEEECCCcHhhHH-------HHHHHHhcCCE
Confidence 47999999999999999999976532 22 2355556788999999999999999533211 11224567999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ ++
T Consensus 96 ~i~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 120 (198)
T 1f6b_A 96 IVFLVDCADHERL-LESKEELDSL----------------------------------------MT-------------- 120 (198)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh--------------
Confidence 9999998754321 1122221110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCC---hhhHHHHhc-------------------CCCeEEEeccccccHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLAR-------------------QPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~---~~~~~~l~~-------------------~~~~v~iSa~~~~~i~~l~ 280 (317)
. ......|+++|.||+|+.. .+++..... ....+.+||++|.|++++.
T Consensus 121 --------~--~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~ 190 (198)
T 1f6b_A 121 --------D--ETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGF 190 (198)
T ss_dssp --------C--GGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHH
T ss_pred --------C--cccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHH
Confidence 0 0012479999999999974 233332221 1237889999999999999
Q ss_pred HHHHHHh
Q 021103 281 ARMWEEM 287 (317)
Q Consensus 281 ~~i~~~l 287 (317)
+.|.+.+
T Consensus 191 ~~l~~~l 197 (198)
T 1f6b_A 191 RWMAQYI 197 (198)
T ss_dssp HHHHTTC
T ss_pred HHHHHhc
Confidence 9987654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-14 Score=115.72 Aligned_cols=156 Identities=16% Similarity=0.146 Sum_probs=101.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||.... .......++.+
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~~ 80 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERF-------RSLRTPFYRGS 80 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGG-------HHHHGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhh-------hhhHHHHHhcC
Confidence 47999999999999999999987655455566666666778888885 6788999995321 11223456779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ .....
T Consensus 81 ~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~--------- 110 (177)
T 1wms_A 81 DCCLLTFSVDDSQS-FQNLSNWKKEF----------------------------------------IYYAD--------- 110 (177)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHHH----------------------------------------HHHHT---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH----------------------------------------HHHcc---------
Confidence 99999998765432 11112111110 00000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 111 ------------~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 172 (177)
T 1wms_A 111 ------------VKEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172 (177)
T ss_dssp ------------CSCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------ccccCCCcEEEEEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124799999999999632 23333322 34689999999999999999997765
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.4e-14 Score=116.81 Aligned_cols=153 Identities=19% Similarity=0.230 Sum_probs=103.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++.. ...+++.||.+.....+.+++. .+.++|+||...... .....+..+
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~-------~~~~~~~~~ 81 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMRAG 81 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc-CccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHHHhhC
Confidence 479999999999999999999874 3567888888877777888875 577899999543211 112234678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... ..+..++.. ++..
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~----------- 109 (181)
T 2fn4_A 82 HGFLLVFAINDRQSF-NEVGKLFTQ----------------------------------------ILRV----------- 109 (181)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999987653221 112111111 1110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 110 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 110 -----------K--DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR 171 (181)
T ss_dssp -----------H--TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence 0 01247999999999997532 2222222 235788999999999999999987764
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=99.59 E-value=3.5e-14 Score=116.21 Aligned_cols=152 Identities=17% Similarity=0.151 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||+|.+++........|.++.+.....+.++|. .+.++|+||...... .....++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-------~~~~~~~~~ 76 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT-------ITTAYYRGA 76 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC-------CCHHHHTTE
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhh-------hHHHHhccC
Confidence 47999999999999999999987755555666777776777777764 577889999533211 122345778
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 102 (170)
T 1g16_A 77 MGIILVYDITDERT-FTNIKQWFKT--------------------------------------------VN--------- 102 (170)
T ss_dssp EEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... +....+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~ 163 (170)
T 1g16_A 103 ---------E-H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 163 (170)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999532 22222221 24689999999999999999998765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=4.6e-14 Score=117.75 Aligned_cols=151 Identities=15% Similarity=0.147 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
..+++++|++|||||||++.+++.... +.+.++ .....+.+++..+.++||||..... ......+..+
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g----~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 84 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKIR-------PYWRSYFENT 84 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGGH-------HHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcccCcCC----eEEEEEEECCEEEEEEECCCCHHHH-------HHHHHHhCCC
Confidence 458999999999999999999987422 122222 2334677888999999999953211 1223346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|......- ..+..++..+ + .
T Consensus 85 ~~~i~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~---~--------- 111 (181)
T 1fzq_A 85 DILIYVIDSADRKRF-EETGQELTEL----------------------------------------L---E--------- 111 (181)
T ss_dssp SEEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------T---T---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHH----------------------------------------H---h---------
Confidence 999999998654321 1122121110 0 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHHHhc-------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+..... +..... ....+.+||++|.|++++.+.|.+.+.
T Consensus 112 ----------~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 112 ----------EE--KLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp ----------CG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred ----------Ch--hhcCCCEEEEEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence 00 012479999999999975422 221111 124688999999999999999987653
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=116.83 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.|++........|.++.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-------ITKAYYRGA 78 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-------CCHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-------HHHHHhcCC
Confidence 47999999999999999999987644333444555666677777765 578899999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +
T Consensus 79 d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i---------- 103 (168)
T 1z2a_A 79 QACVLVFSTTDRESF-EAISSWREK--------------------------------------------V---------- 103 (168)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH--------------------------------------------H----------
Confidence 999999987653211 111111111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 104 --------~~~----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 104 --------VAE----VGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH 165 (168)
T ss_dssp --------HHH----HCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred --------HHh----CCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 000 024799999999998753 22233322 24678999999999999999997754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=120.43 Aligned_cols=152 Identities=16% Similarity=0.137 Sum_probs=97.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|+|||||++.+++.. ...+++.||.+.....+.+++.. +.++||||....... ....+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~~~~~ 91 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG-YPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKL-------RPLCYTN 91 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC---------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSS-------GGGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHH-------hHhhcCC
Confidence 4689999999999999999999865 44677888888877888888864 569999997432111 1124577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|.............++.. +
T Consensus 92 ~~~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------~--------- 118 (201)
T 2q3h_A 92 TDIFLLCFSVVSPSSFQNVSEKWVPE--------------------------------------------I--------- 118 (201)
T ss_dssp CSEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------H---------
T ss_pred CcEEEEEEECCCHHHHHHHHHHHHHH--------------------------------------------H---------
Confidence 99999999986543211110011111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----------------hHHHHh---cCCCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLA---RQPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----------------~~~~l~---~~~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+.... +...+. .....+.+||+++.|++++
T Consensus 119 -------------~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 185 (201)
T 2q3h_A 119 -------------RCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEV 185 (201)
T ss_dssp -------------HHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHH
T ss_pred -------------HHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHH
Confidence 0001147999999999997421 122222 1236788999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 186 ~~~l~~~~ 193 (201)
T 2q3h_A 186 FDAAIVAG 193 (201)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.7e-14 Score=114.92 Aligned_cols=152 Identities=23% Similarity=0.232 Sum_probs=100.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++... ...++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 76 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcc-CCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhH-------HHHHHHhhcC
Confidence 4799999999999999999998653 456677777777777788775 57899999953211 1222345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 103 (168)
T 1u8z_A 77 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 103 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765422 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 104 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (168)
T 1u8z_A 104 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ----------HHC--CTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999998743 22222221 23578899999999999999987754
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-14 Score=119.59 Aligned_cols=151 Identities=19% Similarity=0.157 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.... ....|.......+.+++..+.++|+||...... .....+..+|
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 87 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-------YWRCYYADTA 87 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CCT-------TGGGTTTTEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCcC---ccCCcCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 358999999999999999999864431 112233344567788889999999999743211 1223456799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- +.+..++..+ ..
T Consensus 88 ~ii~v~d~~~~~s~-~~~~~~~~~~--------------------------------------------~~--------- 113 (183)
T 1moz_A 88 AVIFVVDSTDKDRM-STASKELHLM--------------------------------------------LQ--------- 113 (183)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHHH--------------------------------------------TT---------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH--------------------------------------------Hc---------
Confidence 99999997654221 1122222111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC-------CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ-------PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~-------~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+... +++...... ...+.+||+++.|++++.+.|.+.+
T Consensus 114 ---------~--~~~~~~piilv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 178 (183)
T 1moz_A 114 ---------E--EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVI 178 (183)
T ss_dssp ---------S--STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHH
T ss_pred ---------C--hhhCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHH
Confidence 0 00125799999999999754 223222111 1478899999999999999998765
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-14 Score=114.46 Aligned_cols=152 Identities=18% Similarity=0.186 Sum_probs=99.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+++|++|||||||+|.+.+........|..+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 76 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFA-------SLAPXYYRNA 76 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhh-------hhhhhhhccC
Confidence 47999999999999999999987654334455555555566777765 67889999953211 1223346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +.
T Consensus 77 d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------~~--------- 102 (170)
T 1ek0_A 77 QAALVVYDVTKPQSF-IKARHWVKE--------------------------------------------LH--------- 102 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH--------------------------------------------HH---------
T ss_pred cEEEEEEecCChHHH-HHHHHHHHH--------------------------------------------HH---------
Confidence 999999998654221 112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh--------hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--------~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~~---~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 103 ---------EQ---ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp ---------HH---SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred ---------Hh---cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124789999999998743 11222221 23578899999999999999998765
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=5e-14 Score=120.05 Aligned_cols=154 Identities=18% Similarity=0.146 Sum_probs=105.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|+|||||+|.|++........|.++.+.....+.++| ..+.++||||...... .....+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 92 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRT-------ITTAYYRG 92 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTC-------CCHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHH-------HHHHHhcc
Confidence 46899999999999999999998776556667777777778888888 4688999999543211 12234578
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++.. +.
T Consensus 93 ~d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 119 (213)
T 3cph_A 93 AMGIILVYDVTDERT-FTNIKQWFKT--------------------------------------------VN-------- 119 (213)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999765421 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 120 ----------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 120 ----------E-H--ANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ 181 (213)
T ss_dssp ----------H-H--TTTCSEEEEEEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred ----------H-h--cCCCCCEEEEEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0124799999999999532 22233322 246899999999999999999987653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-14 Score=114.85 Aligned_cols=151 Identities=21% Similarity=0.232 Sum_probs=98.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|+|||||+|.+.+.... .. ..|.......+.+++..+.++||||..... ......++.+|
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~d 76 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVV-TT--IPTIGFNVETVTYKNLKFQVWDLGGLTSIR-------PYWRCYYSNTD 76 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCC-CC--CCCSSEEEEEEEETTEEEEEEEECCCGGGG-------GGGGGGCTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCC-Cc--CCcCccceEEEEECCEEEEEEECCCChhhh-------HHHHHHhccCC
Confidence 458999999999999999999875532 11 224455566788889999999999964311 11223456899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 77 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 102 (171)
T 1upt_A 77 AVIYVVDSCDRDRI-GISKSELVAM----------------------------------------LE------------- 102 (171)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654221 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHH-Hh-c-----CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDK-LA-R-----QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~-l~-~-----~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+.... ++.. +. . ....+.+||+++.|++++.+.|.+.+
T Consensus 103 ---------~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 167 (171)
T 1upt_A 103 ---------E--EELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 167 (171)
T ss_dssp ---------C--GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------c--hhhCCCEEEEEEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHH
Confidence 0 001247999999999998642 2221 11 1 11478899999999999999998765
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.4e-14 Score=119.22 Aligned_cols=150 Identities=18% Similarity=0.176 Sum_probs=96.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|.+|+|||||+|.+++.... ....|.......+.+++..+.++|+||...... .....++.+|
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 90 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMNEVV---HTSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTE 90 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTTSCE---EEECCSSSSCEEEEETTEEEEEEEESSSGGGTC-------GGGGGGTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCC---ccCCcCceeeEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 458999999999999999999986541 112233334457778899999999999743211 1223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 91 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 116 (181)
T 2h17_A 91 FVIVVVDSTDRERI-SVTREELYKM----------------------------------------LA------------- 116 (181)
T ss_dssp EEEEEEETTCTTTH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654221 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. .....|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.
T Consensus 117 ---------~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 117 ---------HE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ---------CG--GGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred ---------Ch--hhCCCeEEEEEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence 00 0124799999999999753 2232211 11 147889999999999999988653
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=116.67 Aligned_cols=154 Identities=19% Similarity=0.195 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++.. ....++.|+.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 78 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEGQ-FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSI-------FPQTYSIDI 78 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCC-------CCGGGTTTC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhH-------HHHHHHhcC
Confidence 489999999999999999999654 3466777777777778888885 457999999643211 111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. ++..
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 106 (181)
T 3t5g_A 79 NGYILVYSVTSIKS-FEVIKVIHGK----------------------------------------LLDM----------- 106 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 99999998865322 1112211111 1110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.+.+.+..
T Consensus 107 -----------~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 107 -----------V--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK 169 (181)
T ss_dssp -----------C------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred -----------c--CCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 0 0124799999999998643 22333322 2357889999999999999999887644
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=7.2e-14 Score=118.70 Aligned_cols=152 Identities=17% Similarity=0.126 Sum_probs=104.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|.++.+.....+.+++. .+.++||||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRT-------ITSSYYRGS 81 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHH-------HHHHhccCC
Confidence 47999999999999999999987765555677777777778888875 678999999543211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 82 d~vilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (206)
T 2bcg_Y 82 HGIIIVYDVTDQES-FNGVKMWLQE--------------------------------------------ID--------- 107 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 169 (206)
T 2bcg_Y 108 ----------RYA--TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 169 (206)
T ss_dssp ----------HHS--CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 1247899999999997532 2222322 24688999999999999999997765
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=117.93 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=98.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|++|+|||||+|.+++....... ..|.......+...+..+.++|+||..... ......+..+|
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~d 92 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNEDM--IPTVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVS 92 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCcc--CCCCceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHccCC
Confidence 358999999999999999999976543111 223334445677788899999999953211 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|....... ..+..++..+ +.
T Consensus 93 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~------------- 118 (188)
T 1zd9_A 93 AIVYMVDAADQEKI-EASKNELHNL----------------------------------------LD------------- 118 (188)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------Hh-------------
Confidence 99999998654321 1111111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHH-HHh----c--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVD-KLA----R--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~-~l~----~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... ++. .+. . ....+.+||+++.|++++.+.|.+.+..
T Consensus 119 ---------~~--~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 119 ---------KP--QLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp ---------CG--GGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred ---------Cc--ccCCCCEEEEEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 01247999999999997532 221 111 0 1246889999999999999999887643
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=7e-14 Score=118.37 Aligned_cols=153 Identities=22% Similarity=0.215 Sum_probs=103.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++.. ...+++.|+.+.....+.+++. .+.++|+||..... ......+..+
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 86 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 86 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhH-------HHHHHHHhhC
Confidence 479999999999999999999765 3467788888877788888875 67899999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 113 (206)
T 2bov_A 87 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 113 (206)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765421 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+.... +...+.+ ....+.+||++|.|++++.+.|.+.+.
T Consensus 114 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 114 ----------VK--EDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR 176 (206)
T ss_dssp ----------HT--TCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred ----------hc--CCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222221 235788999999999999999987663
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-14 Score=116.14 Aligned_cols=155 Identities=17% Similarity=0.147 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+++++|++|||||||+|.+++...+....|.++.+.....+.+++ ..+.++|+||..... ......++.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 79 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGG-------KMLDKYIYG 79 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTC-------TTHHHHHTT
T ss_pred EEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcccc-------chhhHHHhh
Confidence 4799999999999999999998764422234445667777888877 678999999953211 112234578
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++..+ ..
T Consensus 80 ~d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~---------- 107 (178)
T 2hxs_A 80 AQGVLLVYDITNYQS-FENLEDWYTVV-----------------------------------------KK---------- 107 (178)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHHH-----------------------------------------HH----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------HH----------
Confidence 999999999865432 11111111110 00
Q ss_pred cCCCChhhHHHHHhcccceee-eeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMK-CVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p-~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. . .....| +++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 108 --------~~---~-~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 172 (178)
T 2hxs_A 108 --------VS---E-ESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL 172 (178)
T ss_dssp --------HH---H-HHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred --------Hh---c-ccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 0 001234 7899999999642 22333322 235788999999999999999988764
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=5.4e-14 Score=118.55 Aligned_cols=151 Identities=16% Similarity=0.135 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+++.... .. ..|.......+.+++..+.++||||...... .....++.+|
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~--~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d 98 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKLGEIV-TT--IPTIGFNVETVEYKNICFTVWDVGGQDKIRP-------LWRHYFQNTQ 98 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCSSCCE-EE--EEETTEEEEEEEETTEEEEEEECC-----CT-------THHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhCCcc-cc--CCcCceeEEEEEECCEEEEEEECCCCHhHHH-------HHHHHhccCC
Confidence 468999999999999999999865432 22 2355556677888889999999999643111 1223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +.
T Consensus 99 ~iilv~D~~~~~s~-~~~~~~l~~~----------------------------------------~~------------- 124 (192)
T 2b6h_A 99 GLIFVVDSNDRERV-QESADELQKM----------------------------------------LQ------------- 124 (192)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HT-------------
T ss_pred EEEEEEECCCHHHH-HHHHHHHHHH----------------------------------------hc-------------
Confidence 99999998754321 1122222110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHhc-------CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLAR-------QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~~-------~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|+||+|+.... ++..... ....+.+||+++.|++++.+.|.+.+
T Consensus 125 ---------~--~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 189 (192)
T 2b6h_A 125 ---------E--DELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHEL 189 (192)
T ss_dssp ---------C--GGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHT
T ss_pred ---------c--cccCCCeEEEEEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHH
Confidence 0 001247999999999997642 2221111 11378899999999999999998765
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=7.6e-14 Score=116.74 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=98.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+|+++|++|||||||+|.+++.... . ...|.......+.+++..+.++||||...... .....++.+|.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~ 86 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNEVV--H-TSPTIGSNVEEIVINNTRFLMWDIGGQESLRS-------SWNTYYTNTEF 86 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSCE--E-EECCSCSSCEEEEETTEEEEEEECCC----CG-------GGHHHHTTCCE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC--c-CcCCCccceEEEEECCEEEEEEECCCCHhHHH-------HHHHHhcCCCE
Confidence 58999999999999999999965433 1 12344455677888999999999999743211 11234578999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|......- ..+..++..+ +.
T Consensus 87 ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~~-------------- 111 (187)
T 1zj6_A 87 VIVVVDSTDRERI-SVTREELYKM----------------------------------------LA-------------- 111 (187)
T ss_dssp EEEEEETTCTTTH-HHHHHHHHHH----------------------------------------HT--------------
T ss_pred EEEEEeCCCHHHH-HHHHHHHHHH----------------------------------------Hh--------------
Confidence 9999998654221 1111111110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.+..
T Consensus 112 --------~~--~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 178 (187)
T 1zj6_A 112 --------HE--DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI 178 (187)
T ss_dssp --------SG--GGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred --------ch--hhCCCeEEEEEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 00 0124799999999999753 2332211 11 246889999999999999999987753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-14 Score=116.82 Aligned_cols=152 Identities=18% Similarity=0.155 Sum_probs=103.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||.... .......+..+
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 83 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERF-------RSVTRSYYRGA 83 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHH-------HHHHHHHHhcC
Confidence 4799999999999999999998776555566777777777888887 46789999995321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 84 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 109 (186)
T 2bme_A 84 AGALLVYDITSRET-YNALTNWLTD--------------------------------------------AR--------- 109 (186)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 110 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 171 (186)
T 2bme_A 110 ----------ML--ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 171 (186)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999996431 2222222 23578899999999999999987765
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.1e-14 Score=118.59 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|||||||++.+++......+|.. |.......+...+..+.++||||..... ......++.+|
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d 88 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA-TVGYNVETFEKGRVAFTVFDMGGAKKFR-------GLWETYYDNID 88 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSCCC----CCCC-CSSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCccccccc-ccceeEEEEEeCCEEEEEEECCCCHhHH-------HHHHHHHhcCC
Confidence 458999999999999999999987654312222 3334445667788899999999964321 11223457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......- ..+..++..+ +....
T Consensus 89 ~ii~v~D~~~~~s~-~~~~~~~~~~----------------------------------------~~~~~---------- 117 (199)
T 4bas_A 89 AVIFVVDSSDHLRL-CVVKSEIQAM----------------------------------------LKHED---------- 117 (199)
T ss_dssp EEEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTSHH----------
T ss_pred EEEEEEECCcHHHH-HHHHHHHHHH----------------------------------------HhChh----------
Confidence 99999998764321 1122222110 00000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHH-Hh-----c--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDK-LA-----R--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~-l~-----~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...........|+++|+||+|+... +++.. +. + ....+.+||+++.|++++.+.|.+.+.
T Consensus 118 -------~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 118 -------IRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETAS 188 (199)
T ss_dssp -------HHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHH
T ss_pred -------hhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHH
Confidence 0000000015799999999999865 22221 11 1 124688999999999999999988764
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=118.88 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++... ...+..|+.+.....+.+++..+ .++||||..... ......++.+
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 95 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYD-------RLRPLSYADS 95 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC-CCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHH-------HHhHhhccCC
Confidence 5899999999999999999998764 34566666666666777877654 889999943211 1122345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +.
T Consensus 96 d~~i~v~d~~~~~s~~~~~~~~~~~-----------------------------------------~~------------ 122 (194)
T 3reg_A 96 DVVLLCFAVNNRTSFDNISTKWEPE-----------------------------------------IK------------ 122 (194)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH-----------------------------------------HH------------
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHH-----------------------------------------HH------------
Confidence 9999999987542211110111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-------hhHHHHh---cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-------DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-------~~~~~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+... ++...+. .....+.+||+++.|++++.+.|.+.+
T Consensus 123 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (194)
T 3reg_A 123 -------------HYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCI 186 (194)
T ss_dssp -------------HHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHH
Confidence 00124799999999999742 2222222 234488999999999999999998876
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=115.82 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=92.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++........+.+|.+.....+.+++.. +.++|+||....... .....++.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~------~~~~~~~~~ 76 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGW------LQDHCLQTG 76 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------------CHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchh------hhhhhhccC
Confidence 379999999999999999999877655556667788888888888854 568899986432110 011224568
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|...... ...+..++.. +..
T Consensus 77 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~------------ 103 (169)
T 3q85_A 77 DAFLIVFSVTDRRS-FSKVPETLLR----------------------------------------LRA------------ 103 (169)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCChHH-HHHHHHHHHH----------------------------------------HHh------------
Confidence 99999998765321 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.+.+.+.
T Consensus 104 ----------~~--~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~ 166 (169)
T 3q85_A 104 ----------GR--PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 166 (169)
T ss_dssp ----------HS--TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred ----------cc--cCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHH
Confidence 00 0125799999999998732 22222222 235788999999999999999987653
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=114.25 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=99.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++.... ..++.|+.+.....+.+++.. +.++|+||..... ......++.+
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI-EKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA-------SMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc-ccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhccC
Confidence 47999999999999999999976533 345556555556677777765 7889999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +++.
T Consensus 76 ~~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 103 (167)
T 1kao_A 76 QGFILVYSLVNQQSF-QDIKPMRDQ----------------------------------------IIRV----------- 103 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEeCCCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999987654221 111111111 1100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+.... +...+.. ..+.+.+||+++.|++++.+.|.+.+
T Consensus 104 -----------~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 164 (167)
T 1kao_A 104 -----------K--RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp -----------T--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred -----------c--CCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHH
Confidence 0 01247999999999986432 2222221 24688999999999999999998765
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.1e-14 Score=119.47 Aligned_cols=152 Identities=16% Similarity=0.155 Sum_probs=81.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||++.+++........|.++.+.....+.++| ..+.++|+||...... .....++.+
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 81 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGA 81 (183)
T ss_dssp EEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhh-------hHHHHHhcC
Confidence 4799999999999999999997765555667777777777888888 5678999999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..++.. +.
T Consensus 82 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (183)
T 2fu5_C 82 MGIMLVYDITNEKS-FDNIRNWIRN--------------------------------------------IE--------- 107 (183)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1122222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ---------~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i 169 (183)
T 2fu5_C 108 ---------EH---ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 169 (183)
T ss_dssp ---------HH---SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999742 22333322 23578899999999999999997765
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-14 Score=113.39 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=97.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++... ...++.|+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~-------~~~~~~~~~~ 75 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFT-------AMRDLYMKNG 75 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSST-------THHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHHhccC
Confidence 4799999999999999999998543 344555555555555666554 57889999954321 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 76 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 102 (167)
T 1c1y_A 76 QGFALVYSITAQST-FNDLQDLREQ----------------------------------------ILR------------ 102 (167)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765421 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 103 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 103 ----------VK--DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp ----------HH--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------hh--CcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence 00 0125799999999999643 22333322 34578899999999999999998765
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=114.04 Aligned_cols=154 Identities=14% Similarity=0.148 Sum_probs=99.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||+|.+++........+..+.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 85 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYH-------SLAPMYYRGA 85 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGG-------GGTHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhh-------hhhHHHhccC
Confidence 47999999999999999999987654333344444444556667654 67899999953211 1122345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 86 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 111 (181)
T 2efe_B 86 AAAIIVFDVTNQAS-FERAKKWVQE--------------------------------------------LQ--------- 111 (181)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765422 1112222211 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+..
T Consensus 112 ---------~~---~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 112 ---------AQ---GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred ---------Hh---cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 00 0124789999999999643 22333322 2357889999999999999999887653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=114.77 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=100.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+++|++|+|||||+|.+++.... ....|.++.+.....+.+++. .+.++|+||..... ......+..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~ 83 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFR-------SVTHAYYRD 83 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGG
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHH-------HHHHHHccC
Confidence 47999999999999999999987654 344566666666667778775 67889999953211 112234577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. +.
T Consensus 84 ~d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 110 (180)
T 2g6b_A 84 AHALLLLYDVTNKAS-FDNIQAWLTE--------------------------------------------IH-------- 110 (180)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865422 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
... ....|+++|+||+|+.... +...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 111 -----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 111 -----------EYA--QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 173 (180)
T ss_dssp -----------HHS--CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------HhC--CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 000 1247999999999997532 2222221 246889999999999999999988764
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3e-14 Score=121.28 Aligned_cols=83 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|||||||++.+++... ...++.|+.+.....+.+++..+. ++||||..... ......++.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQ 101 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHSCC-CC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGT-------TTGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCCC-CCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhH-------HHHHHHhcc
Confidence 46899999999999999999996543 456777777777777788776654 89999963311 112234578
Q ss_pred CcEEEEEecCCCc
Q 021103 140 SDIVLMVLDASKS 152 (317)
Q Consensus 140 ~d~i~~v~~~~~~ 152 (317)
+|.+++++|....
T Consensus 102 ~d~~i~v~d~~~~ 114 (204)
T 4gzl_A 102 TDVFLICFSLVSP 114 (204)
T ss_dssp CSEEEEEEETTCH
T ss_pred CCEEEEEEECCCH
Confidence 9999999998754
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.3e-14 Score=118.54 Aligned_cols=155 Identities=18% Similarity=0.175 Sum_probs=104.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|||||||+|.++|.......+|.+|.+...+.+.+++.. +.++|++|..... .. .....++.+
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~----~~--~~~~~~~~~ 97 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAG----GW--LRDHCLQTG 97 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGG----HH--HHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccch----hh--hHHHhhccC
Confidence 589999999999999999999876655677888888888888998875 4567999863211 00 111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|...... ...+..++.. +.
T Consensus 98 d~~ilv~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 123 (195)
T 3cbq_A 98 DAFLIVFSVTDRRS-FSKVPETLLR--------------------------------------------LR--------- 123 (195)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998765321 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. . .....|+++|.||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 124 ---------~~-~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~ 187 (195)
T 3cbq_A 124 ---------AG-R-PHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR 187 (195)
T ss_dssp ---------HH-S-TTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred ---------Hh-c-CCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 00 0 0125799999999999743 22333322 235788999999999999999987663
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=116.51 Aligned_cols=151 Identities=23% Similarity=0.207 Sum_probs=96.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---------------------------------
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--------------------------------- 108 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--------------------------------- 108 (317)
..+|+|+|++|||||||+|.|++...+....|.++.+.....+.+++
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNY 86 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------CC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccc
Confidence 45799999999999999999998764433333333444445555555
Q ss_pred ------eeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccce
Q 021103 109 ------TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182 (317)
Q Consensus 109 ------~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~ 182 (317)
..+.++||||..... ......++.+|.+++++|...+... ..+..++..
T Consensus 87 ~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~d~~i~v~D~~~~~s~-~~~~~~~~~----------------- 141 (208)
T 3clv_A 87 NENLCNIKFDIWDTAGQERYA-------SIVPLYYRGATCAIVVFDISNSNTL-DRAKTWVNQ----------------- 141 (208)
T ss_dssp CTTTCEEEEEEEECTTGGGCT-------TTHHHHHTTCSEEEEEEETTCHHHH-HHHHHHHHH-----------------
T ss_pred cCccceeEEEEEECCCcHHHH-------HHHHHHhcCCCEEEEEEECCCHHHH-HHHHHHHHH-----------------
Confidence 678899999953211 1123345789999999998654221 111111111
Q ss_pred eeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC----hhhHHH
Q 021103 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG----IDDVDK 258 (317)
Q Consensus 183 qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~----~~~~~~ 258 (317)
+. .. ...|+++|+||+|... .++...
T Consensus 142 ---------------------------i~----------------------~~-~~~piilv~NK~D~~~~~~~~~~~~~ 171 (208)
T 3clv_A 142 ---------------------------LK----------------------IS-SNYIIILVANKIDKNKFQVDILEVQK 171 (208)
T ss_dssp ---------------------------HH----------------------HH-SCCEEEEEEECTTCC-CCSCHHHHHH
T ss_pred ---------------------------HH----------------------hh-CCCcEEEEEECCCcccccCCHHHHHH
Confidence 00 00 1279999999999421 122332
Q ss_pred Hhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 259 LAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 259 l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+.+ ....+++||+++.|++++.+.|.+.+
T Consensus 172 ~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~ 202 (208)
T 3clv_A 172 YAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI 202 (208)
T ss_dssp HHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence 222 23578899999999999999987754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.5e-14 Score=115.38 Aligned_cols=152 Identities=23% Similarity=0.233 Sum_probs=102.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++... ...++.|+.+.....+.+++. .+.++|+||..... ......+..+
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 90 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 90 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCC-CCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccH-------HHHHHHhccC
Confidence 5899999999999999999998653 456777877777777888875 57899999953211 1222345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +..
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 117 (187)
T 2a9k_A 91 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILR------------ 117 (187)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH----------------------------------------HHH------------
Confidence 99999998765422 1111111111 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 118 ----------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 179 (187)
T 2a9k_A 118 ----------VKE--DENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179 (187)
T ss_dssp ----------HHC--CTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcC--CCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999998643 22222222 23578899999999999999998765
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.8e-14 Score=116.17 Aligned_cols=156 Identities=15% Similarity=0.172 Sum_probs=96.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++ ..+.++|+||..... ......++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 81 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYRG 81 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhh-------hhhHHHhhc
Confidence 5799999999999999999998765444455555666667777762 467899999943211 112234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++..+ .....
T Consensus 82 ~d~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~~~-------- 112 (182)
T 1ky3_A 82 ADCCVLVYDVTNASS-FENIKSWRDEF----------------------------------------LVHAN-------- 112 (182)
T ss_dssp CCEEEEEEETTCHHH-HHTHHHHHHHH----------------------------------------HHHHC--------
T ss_pred CCEEEEEEECCChHH-HHHHHHHHHHH----------------------------------------HHHhc--------
Confidence 899999998865422 11111111110 00000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh------hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI------DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~------~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 113 -------------~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 113 -------------VNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA 176 (182)
T ss_dssp -------------CSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------------ccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 000124799999999999532 22333332 34688999999999999999997754
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.8e-14 Score=117.80 Aligned_cols=152 Identities=19% Similarity=0.218 Sum_probs=97.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|..+.+.....+.+++. .+.++||||.... .......++.+
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERF-------NSITSAYYRSA 99 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHH-------HHHHHHHhcCC
Confidence 47999999999999999999987654444556666666777888774 5788999995321 11223445779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... +.+..++.. +..
T Consensus 100 d~iilV~D~~~~~s~-~~~~~~~~~-----------------------------------------i~~----------- 126 (192)
T 2il1_A 100 KGIILVYDITKKETF-DDLPKWMKM-----------------------------------------IDK----------- 126 (192)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH-----------------------------------------HHH-----------
Confidence 999999998654221 111111111 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+... ++.+.+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 127 -----------~--~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 188 (192)
T 2il1_A 127 -----------Y--ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI 188 (192)
T ss_dssp -----------H--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------h--cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0124799999999998743 22333332 23578899999999999999987654
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=117.52 Aligned_cols=152 Identities=18% Similarity=0.184 Sum_probs=102.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.....+.++|. .+.++||||.... .......++.+
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~~~~~~~~~~~ 99 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYYRSA 99 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHH-------HHHHHHHHhcC
Confidence 47999999999999999999987655455566666777778888885 5788999995321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 100 d~~i~v~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 125 (201)
T 2ew1_A 100 NALILTYDITCEES-FRCLPEWLRE--------------------------------------------IE--------- 125 (201)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+. .....+.+||+++.|++++.+.|.+.+
T Consensus 126 ----------~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i 187 (201)
T 2ew1_A 126 ----------QY--ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187 (201)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124789999999999743 2222222 134688999999999999999987765
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=99.56 E-value=5.8e-14 Score=116.72 Aligned_cols=152 Identities=14% Similarity=0.102 Sum_probs=99.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||++.+++... ...+..|+.+.....+.+++.. +.++||||...... .....+..+
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 77 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR-------LRPLSYPQT 77 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCC-CCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHhccCC
Confidence 4799999999999999999997543 3455666666666677777765 45899999743211 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +
T Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------~---------- 103 (186)
T 1mh1_A 78 DVSLICFSLVSPASFENVRAKWYPE--------------------------------------------V---------- 103 (186)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------H----------
T ss_pred cEEEEEEECCChhhHHHHHHHHHHH--------------------------------------------H----------
Confidence 9999999986542211110011110 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----------------HHHHhc-C--CCeEEEeccccccHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLAR-Q--PNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----------------~~~l~~-~--~~~v~iSa~~~~~i~~l~ 280 (317)
.......|+++|+||+|+..... ...+.+ . ...+.+||++|.|++++.
T Consensus 104 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 171 (186)
T 1mh1_A 104 ------------RHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171 (186)
T ss_dssp ------------HHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHH
T ss_pred ------------HHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHH
Confidence 00011479999999999875321 111211 1 267889999999999999
Q ss_pred HHHHHHhC
Q 021103 281 ARMWEEMG 288 (317)
Q Consensus 281 ~~i~~~l~ 288 (317)
+.|.+.+.
T Consensus 172 ~~l~~~~~ 179 (186)
T 1mh1_A 172 DEAIRAVL 179 (186)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHHh
Confidence 99988763
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.9e-14 Score=118.62 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=102.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|.++.+.....+.+++ ..+.++||||....... ....++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~ 81 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-------GVAFYRGA 81 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-------CCGGGTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh-------HHHHHhCC
Confidence 5799999999999999999998765544455666777777777776 46789999995332111 12345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +.....
T Consensus 82 d~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~~~~--------- 111 (207)
T 1vg8_A 82 DCCVLVFDVTAPNTF-KTLDSWRDE----------------------------------------FLIQAS--------- 111 (207)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHC---------
T ss_pred cEEEEEEECCCHHHH-HHHHHHHHH----------------------------------------HHHhcc---------
Confidence 999999998654221 111111111 000000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHh---cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLA---RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|+||+|+... +....+. .....+.+||++|.|++++.+.|.+.+
T Consensus 112 ------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 173 (207)
T 1vg8_A 112 ------------PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA 173 (207)
T ss_dssp ------------CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------cccCCCCcEEEEEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000124799999999999742 2222222 234688999999999999999997765
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=116.20 Aligned_cols=150 Identities=14% Similarity=0.098 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|+|||||++.+++... ..+++.|+.+.....+.+++ ..+.++|+||...... .....++.+
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~ 90 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYANDAF-PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMT 90 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSC-CCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhH-------HHHHhcCCC
Confidence 4899999999999999999998743 45677777776667777777 4678899999643211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|......-. .+. .++.. +
T Consensus 91 d~~i~v~d~~~~~s~~-~~~~~~~~~--------------------------------------------~--------- 116 (194)
T 2atx_A 91 DVFLICFSVVNPASFQ-NVKEEWVPE--------------------------------------------L--------- 116 (194)
T ss_dssp SEEEEEEETTCHHHHH-HHHHTHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECCCHHHHH-HHHHHHHHH--------------------------------------------H---------
Confidence 9999999976542211 111 11111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----------------hHHHHh---cCCCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----------------DVDKLA---RQPNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----------------~~~~l~---~~~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+.... +...+. .....+.+||+++.|++++
T Consensus 117 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 183 (194)
T 2atx_A 117 -------------KEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTV 183 (194)
T ss_dssp -------------HHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHH
T ss_pred -------------HHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHH
Confidence 0001147999999999997532 111121 1236889999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 184 ~~~l~~~i 191 (194)
T 2atx_A 184 FDEAIIAI 191 (194)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-13 Score=112.54 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=96.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
-+++++|++|+|||||+|.+++.... ..+.+++|... ..+.+++ ..+.++||||..... ......++
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~ 77 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT--KTVQYQNELHKFLIWDTAGLERFR-------ALAPMYYR 77 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE--EEEEETTEEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE--EEEEECCeEEEEEEEcCCCchhhh-------cccHhhCc
Confidence 47999999999999999999987643 33444444433 3445555 467899999973211 11223457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... ..+..++..+ ...
T Consensus 78 ~~~~~i~v~d~~~~~s~-~~~~~~~~~l-----------------------------------------~~~-------- 107 (170)
T 1z0j_A 78 GSAAAIIVYDITKEETF-STLKNWVREL-----------------------------------------RQH-------- 107 (170)
T ss_dssp TCSEEEEEEETTCHHHH-HHHHHHHHHH-----------------------------------------HHH--------
T ss_pred CCCEEEEEEECcCHHHH-HHHHHHHHHH-----------------------------------------HHh--------
Confidence 78999999988654221 1112221110 000
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.....|+++|.||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 108 ----------------~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 108 ----------------GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168 (170)
T ss_dssp ----------------SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred ----------------CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence 01247899999999997532 2222222 245788999999999999999987653
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=8.3e-14 Score=114.05 Aligned_cols=152 Identities=14% Similarity=0.163 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||..... ......++.+
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~~ 79 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFH-------ALGPIYYRDS 79 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhh-------hhHHHHhccC
Confidence 47999999999999999999987654444555555655667777765 46778999953211 1112245678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 80 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 105 (170)
T 1z08_A 80 NGAILVYDITDEDS-FQKVKNWVKE--------------------------------------------LR--------- 105 (170)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765421 1122222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... ....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 106 ---------~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 167 (170)
T 1z08_A 106 ---------KML---GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167 (170)
T ss_dssp ---------HHH---GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hhc---CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 124799999999999753 22333322 23578899999999999999998765
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=115.91 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=96.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECC-----------eeEEEecCCCccccccCCchhH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYND-----------TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g-----------~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.. ...+.+++ ..+.++|+||.... .
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~ 84 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERF-------R 84 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGG-------H
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHH-------H
Confidence 47999999999999999999986543222232233332 33455554 36889999996321 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHh
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l 210 (317)
......++.+|.+++++|....... ..+..++.. +
T Consensus 85 ~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i 119 (195)
T 3bc1_A 85 SLTTAFFRDAMGFLLLFDLTNEQSF-LNVRNWISQ--------------------------------------------L 119 (195)
T ss_dssp HHHHHTTTTCSEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H
T ss_pred HHHHHHHcCCCEEEEEEECCCHHHH-HHHHHHHHH--------------------------------------------H
Confidence 2233456789999999998654221 111111111 0
Q ss_pred cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 211 ~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
. ... .....|+++|+||+|+... +....+.. ....+.+||+++.|++++.+.|
T Consensus 120 ~------------------~~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 179 (195)
T 3bc1_A 120 Q------------------MHA--YSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEML 179 (195)
T ss_dssp H------------------HHS--SSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHH
T ss_pred H------------------Hhc--CCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 0 000 0124799999999999752 22332321 2468999999999999999999
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 180 ~~~~ 183 (195)
T 3bc1_A 180 LDLI 183 (195)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-13 Score=109.87 Aligned_cols=152 Identities=18% Similarity=0.181 Sum_probs=99.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|||||||+|.+++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..+
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~ 75 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF-VDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC-ccccCCccceEEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHhhccC
Confidence 3699999999999999999997643 3455666666666677777754 6789999953211 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++.. +.
T Consensus 76 ~~~i~v~d~~~~~~-~~~~~~~~~~--------------------------------------------i~--------- 101 (166)
T 2ce2_X 76 EGFLCVFAINNTKS-FEDIHQYREQ--------------------------------------------IK--------- 101 (166)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998764321 1111211111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|+||+|+... +....+.+ ..+.+.+||+++.|++++.+.|.+.+
T Consensus 102 ---------~~~--~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 102 ---------RVK--DSDDVPMVLVGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------HHH--TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------Hhc--CCCCCcEEEEEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 000 0124799999999998753 22233322 24689999999999999999998765
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-14 Score=122.15 Aligned_cols=159 Identities=16% Similarity=0.130 Sum_probs=91.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccC--CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC--chh---
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTH--SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG--KGR--- 129 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~--~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~--~~~--- 129 (317)
+....+.+++|+|+||||||||+|+|+|.. ..+++.+|+|+.. +.+.+++ .+.++||||+....... ...
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~ 97 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD-GKRLVDLPGYGYAEVPEEMKRKWQR 97 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET-TEEEEECCCCC------CCHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC-CEEEEECcCCcccccCHHHHHHHHH
Confidence 445568899999999999999999999987 2356778888754 4555554 67789999975321000 000
Q ss_pred -HHHHHhhhccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHH
Q 021103 130 -GRQVIAVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQIL 207 (317)
Q Consensus 130 -~~~~~~~~~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l 207 (317)
....+.....++.++++.+....... ...+..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~------------------------------------------- 134 (210)
T 1pui_A 98 ALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAV------------------------------------------- 134 (210)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-------------------------------------------
T ss_pred HHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHH-------------------------------------------
Confidence 01111122356777777776432211 111111111
Q ss_pred HHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----H---HHh-cC---CCeEEEeccccccH
Q 021103 208 HEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----D---KLA-RQ---PNSVVISCNLKLNL 276 (317)
Q Consensus 208 ~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~---~l~-~~---~~~v~iSa~~~~~i 276 (317)
....|.++|.||+|+.+.++. . .+. +. ...+++||+++.++
T Consensus 135 ----------------------------~~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~ 186 (210)
T 1pui_A 135 ----------------------------DSNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGV 186 (210)
T ss_dssp ----------------------------HTTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSH
T ss_pred ----------------------------HcCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCH
Confidence 114688889999999875421 1 111 21 23578999999999
Q ss_pred HHHHHHHHHHhCe
Q 021103 277 DRLLARMWEEMGL 289 (317)
Q Consensus 277 ~~l~~~i~~~l~~ 289 (317)
+++.+.|.+.+..
T Consensus 187 ~~l~~~l~~~~~~ 199 (210)
T 1pui_A 187 DKLRQKLDTWFSE 199 (210)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.8e-13 Score=111.78 Aligned_cols=151 Identities=14% Similarity=0.156 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC--CccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v--~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+++|++|+|||||+|.+++..... .+..+++. ....+.+++ ..+.++|+||..... ......++
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~ 77 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF--LTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYR 77 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE--EEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCEEEEEEEEeCCCcHHhh-------hhhHHhcc
Confidence 479999999999999999999765331 12223222 233455554 467889999953211 11233457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|...... ...+..++.. +.
T Consensus 78 ~~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~------- 105 (170)
T 1r2q_A 78 GAQAAIVVYDITNEES-FARAKNWVKE--------------------------------------------LQ------- 105 (170)
T ss_dssp TCSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH-------
T ss_pred CCCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH-------
Confidence 8999999999865422 1112222111 00
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 106 -----------~~---~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 106 -----------RQ---ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp -----------HH---SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred -----------Hh---cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence 00 0124789999999998643 22222222 234788999999999999999988653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.2e-13 Score=114.18 Aligned_cols=154 Identities=19% Similarity=0.146 Sum_probs=99.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRGA 88 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhh-------hhHHHhccC
Confidence 58999999999999999999987644333444444555566677664 577889999543211 122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +...
T Consensus 89 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~~------- 116 (195)
T 1x3s_A 89 QGVILVYDVTRRDT-FVKLDNWLNE--------------------------------------------LETY------- 116 (195)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HTTC-------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHHh-------
Confidence 99999999865422 1112222211 1000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 117 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 177 (195)
T 1x3s_A 117 -------------CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKII 177 (195)
T ss_dssp -------------CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------------cCcCCCcEEEEEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence 00124799999999999542 22222222 234788999999999999999988763
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=115.80 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=98.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++. .+.++|+||...... .....++.+
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 94 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGA 94 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhh-------hHHHHhccC
Confidence 37999999999999999999987654444555566666677888775 678899999533111 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 95 d~ii~v~d~~~~~s-~~~~~~~l~~--------------------------------------------i~--------- 120 (191)
T 2a5j_A 95 AGALLVYDITRRET-FNHLTSWLED--------------------------------------------AR--------- 120 (191)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 121 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 182 (191)
T 2a5j_A 121 ---------Q-H--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI 182 (191)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999642 22232222 23578899999999999999987654
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=116.37 Aligned_cols=151 Identities=19% Similarity=0.188 Sum_probs=97.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEEC--CeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~--g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+|+|++|+|||||+|.+++... ...+.+++|.... .+.++ +..+.++||||..... ......++
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 94 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK--TVPCGNELHKFLIWDTAGQERFH-------SLAPMYYR 94 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE--EEECSSSEEEEEEEEECCSGGGG-------GGTHHHHT
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE--EEEeCCEEEEEEEEcCCCchhhH-------hhhHHhhc
Confidence 4799999999999999999998763 2445555554443 33333 3568899999953211 11223457
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... ..+..++.. +.
T Consensus 95 ~~d~iilV~d~~~~~s~-~~~~~~~~~--------------------------------------------i~------- 122 (192)
T 2fg5_A 95 GSAAAVIVYDITKQDSF-YTLKKWVKE--------------------------------------------LK------- 122 (192)
T ss_dssp TCSEEEEEEETTCTHHH-HHHHHHHHH--------------------------------------------HH-------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHHHH--------------------------------------------HH-------
Confidence 79999999998654321 112222211 10
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+... ++...+.+. ...+.+||+++.|++++.+.|.+.+.
T Consensus 123 ------------~~--~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 185 (192)
T 2fg5_A 123 ------------EH--GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP 185 (192)
T ss_dssp ------------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred ------------Hh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence 00 0124799999999999742 233333322 34788999999999999999988764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-13 Score=111.56 Aligned_cols=151 Identities=19% Similarity=0.159 Sum_probs=96.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+++++|++|+|||||+|.|++.... ..++.| +.+.....+.+++. .+.++||||..... ......++.
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 87 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKKFM-ADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRG 87 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-SSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhh-------hhHHHHhcc
Confidence 47999999999999999999987643 223332 33334445666664 57889999953211 123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... ...+..++.. +.
T Consensus 88 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~-------- 114 (179)
T 1z0f_A 88 AAGALMVYDITRRST-YNHLSSWLTD--------------------------------------------AR-------- 114 (179)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEeCcCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865421 1111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 115 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 176 (179)
T 1z0f_A 115 -----------NL--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176 (179)
T ss_dssp -----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999643 22233322 23578899999999999999988765
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=114.46 Aligned_cols=152 Identities=19% Similarity=0.179 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........|..+.+.....+.+++. .+.++|+||...... .....+..+
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~~ 95 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-------ITTAYYRGA 95 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCC-------SGGGGGTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-------hHHHhccCC
Confidence 37999999999999999999987643232333333333445566654 678899999533211 122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 96 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 121 (189)
T 2gf9_A 96 MGFLLMYDIANQES-FAAVQDWATQ--------------------------------------------IK--------- 121 (189)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999765321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 122 ---------~-~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i 183 (189)
T 2gf9_A 122 ---------T-Y--SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI 183 (189)
T ss_dssp ---------H-H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 0 0 0124799999999999753 22333322 23578999999999999999998765
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-13 Score=117.34 Aligned_cols=152 Identities=15% Similarity=0.147 Sum_probs=95.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++........|..+.+.....+.+++. .+.++|+||.... .......++.+
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~~ 102 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERF-------RTITQSYYRSA 102 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGG-------HHHHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhH-------HHHHHHHHhhC
Confidence 47999999999999999999876543222233334555667778774 6789999995321 11223456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 103 d~iilv~D~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 128 (201)
T 2hup_A 103 NGAILAYDITKRSS-FLSVPHWIED--------------------------------------------VR--------- 128 (201)
T ss_dssp SEEEEEEETTBHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999764321 1111111111 10
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc-C-C-CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR-Q-P-NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~-~-~-~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.+ . . ..+.+||+++.|++++.+.|.+.+
T Consensus 129 ---------~~---~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 191 (201)
T 2hup_A 129 ---------KY---AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191 (201)
T ss_dssp ---------HH---SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------Hh---cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0124799999999999742 22333322 1 2 568899999999999999998765
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-13 Score=113.83 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|.+|||||||+|.|++... ...++.|+.+.....+.+++.. +.++|+||..... ......+..+
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 93 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF-VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 93 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC------------------CTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC-ccccCCccceEEEEEEEECCEEEEEEEEECCChHHHH-------HHHHHhhCcC
Confidence 4899999999999999999997643 3566777777777788888754 7889999953211 1112345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++...... ...+..++..+ ..
T Consensus 94 d~~i~v~d~~~~~s-~~~~~~~~~~i-----------------------------------------~~----------- 120 (190)
T 3con_A 94 EGFLCVFAINNSKS-FADINLYREQI-----------------------------------------KR----------- 120 (190)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHHH-----------------------------------------HH-----------
Confidence 99999998765422 11122211110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|.+.+.
T Consensus 121 -----------~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 182 (190)
T 3con_A 121 -----------VK-DSDDVPMVLVGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIR 182 (190)
T ss_dssp -----------HH-TCSCCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----------Hh-CCCCCeEEEEEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 00 0124799999999998752 23333322 246899999999999999999987764
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.9e-14 Score=117.71 Aligned_cols=162 Identities=23% Similarity=0.282 Sum_probs=97.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC---chh----HHHHHhh
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG---KGR----GRQVIAV 136 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~---~~~----~~~~~~~ 136 (317)
+|+++|++|||||||+|.+++....++..|++|.++... .+. .+.++||||+....... ... .......
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 78 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence 689999999999999999999887778889998877543 343 67889999964321100 000 1111112
Q ss_pred -hccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 137 -SKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 137 -~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
...+++++++.+...... ....+... +. +.. ...++
T Consensus 79 ~~~~~~~v~~v~d~~s~~~---~~~~~~~~-~~-----------------------------~~~--~~~~~-------- 115 (190)
T 2cxx_A 79 NAKNIDVAVLVVDGKAAPE---IIKRWEKR-GE-----------------------------IPI--DVEFY-------- 115 (190)
T ss_dssp HGGGCCEEEEEEETTHHHH---HHHHHHHT-TC-----------------------------CCH--HHHHH--------
T ss_pred hhccCCEEEEEEcchhhhh---HHHhhhcc-Cc-----------------------------cHH--HHHHH--------
Confidence 344667777777532111 00111110 00 000 00011
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--hHHHHhc---CC------CeEEEeccccccHHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--DVDKLAR---QP------NSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~~~~l~~---~~------~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..+. ....|+++|.||+|+.... ..+.+.+ .+ .++.+||++|.|++++.+.|.
T Consensus 116 --------------~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 179 (190)
T 2cxx_A 116 --------------QFLR--ELDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 179 (190)
T ss_dssp --------------HHHH--HTTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred --------------HHHH--hcCCceEEEeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHH
Confidence 1111 1247999999999998642 3333322 11 368999999999999999998
Q ss_pred HHhC
Q 021103 285 EEMG 288 (317)
Q Consensus 285 ~~l~ 288 (317)
+.+.
T Consensus 180 ~~~~ 183 (190)
T 2cxx_A 180 EVIR 183 (190)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 7763
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=8.7e-14 Score=119.29 Aligned_cols=150 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||++.+++...+ ..+..|+.+.....+.+++. .+.++||||..... ......+..+
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~-------~~~~~~~~~~ 106 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADGAFP-ESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYD-------RLRPLFYPDA 106 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC--------CCCCCEEEEEEEEETTEEEEEEEEEC----------------------CE
T ss_pred EEEEEECcCCCCHHHHHHHHHcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCchhhh-------HHHHHHhccC
Confidence 47999999999999999999976532 44556666666667778776 57789999953211 1112235678
Q ss_pred cEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 141 DIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
|.+++++|......- ..+. .++.. +
T Consensus 107 d~~i~v~d~~~~~s~-~~~~~~~~~~--------------------------------------------~--------- 132 (214)
T 2j1l_A 107 SVLLLCFDVTSPNSF-DNIFNRWYPE--------------------------------------------V--------- 132 (214)
T ss_dssp EEEEEEEETTCHHHH-HHHHHTHHHH--------------------------------------------H---------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHHH--------------------------------------------H---------
Confidence 999999997654221 1111 11111 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----------------HHHHh-cC--CCeEEEeccccccHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----------------VDKLA-RQ--PNSVVISCNLKLNLDRL 279 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----------------~~~l~-~~--~~~v~iSa~~~~~i~~l 279 (317)
.......|+++|.||+|+..... ...+. .. ...+.+||++|.|++++
T Consensus 133 -------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el 199 (214)
T 2j1l_A 133 -------------NHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAV 199 (214)
T ss_dssp -------------HHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHH
T ss_pred -------------HHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHH
Confidence 00012479999999999975431 12222 12 25789999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 200 ~~~l~~~~ 207 (214)
T 2j1l_A 200 FQEAAEVA 207 (214)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998765
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.1e-15 Score=137.40 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=36.7
Q ss_pred eeeeEEEecccCCChhh----HHHHh-----------c-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDD----VDKLA-----------R-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~----~~~l~-----------~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+..... ...+. . .++++++||+++.|+++|++.|.+.+.
T Consensus 213 ~~~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 213 MADLVAVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp SCSEEEECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 47799999999975432 11121 1 245788999999999999999988764
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-15 Score=134.83 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=27.2
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+++....|.+++|+|+||||||||+|+|+|...
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 334445689999999999999999999997653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=116.75 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=94.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|.++.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~-------~~~~~~~~~ 98 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRS-------VTRSYYRGA 98 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSC-------CCHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHH-------HHHHHhccC
Confidence 4799999999999999999998765545556666666677788887 5688999999532111 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 99 d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 124 (200)
T 2o52_A 99 AGALLVYDITSRET-YNSLAAWLTD--------------------------------------------AR--------- 124 (200)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865421 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. . .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 125 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i 186 (200)
T 2o52_A 125 ---------T-L--ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186 (200)
T ss_dssp ---------H-H--TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred ---------H-h--cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 0 0 01247999999999996432 2222222 23578899999999999999997765
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-15 Score=137.68 Aligned_cols=90 Identities=9% Similarity=0.016 Sum_probs=55.7
Q ss_pred cccCCcccccceeeeeeE-----eeecCCCCC-CCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEE
Q 021103 171 NKRPPQIYFKKKKTGGIS-----FNSTLPLTH-VDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYV 244 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia-----lilDEPt~~-LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v 244 (317)
+.++..+|+|++||+.++ +++||||++ ||+... ++++.+. ...|+++|
T Consensus 108 ~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~-~~l~~l~-------------------------~~~~iilV 161 (301)
T 2qnr_A 108 ERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV-AFMKAIH-------------------------NKVNIVPV 161 (301)
T ss_dssp HHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH-HHHHHHT-------------------------TTSCEEEE
T ss_pred HHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH-HHHHHHH-------------------------hcCCEEEE
Confidence 345678999999999874 889999985 999763 4444332 13578999
Q ss_pred EecccCCChhhHH----H---H-hc-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 245 YNKIDVIGIDDVD----K---L-AR-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 245 ~NK~D~~~~~~~~----~---l-~~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+||.|+....++. . . .. ....+.+||+++ +++++.+.+.+.+
T Consensus 162 ~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i 212 (301)
T 2qnr_A 162 IAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL 212 (301)
T ss_dssp ECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence 9999998754321 1 1 11 235678999999 9999877776554
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-13 Score=114.04 Aligned_cols=152 Identities=18% Similarity=0.158 Sum_probs=97.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++. .+.++||||.... .......++.+
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~ 81 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERY-------RTITTAYYRGA 81 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhh-------cchHHHhhcCC
Confidence 47999999999999999999987643222233333333445566654 6788999996321 11233456789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 82 d~ii~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~--------- 107 (203)
T 1zbd_A 82 MGFILMYDITNEES-FNAVQDWSTQ--------------------------------------------IK--------- 107 (203)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999865422 1112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+.... ....+.+ ....+.+||+++.|++++.+.|.+.+
T Consensus 108 ----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 169 (203)
T 1zbd_A 108 ----------TY--SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 169 (203)
T ss_dssp ----------HH--SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222222 23578899999999999999887765
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-13 Score=111.46 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=86.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-+++++|++|||||||+|.++|... +.++.+++|... .+.+++.. +.++|+||...... .....++.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~ 72 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAM 72 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEEEEEEEEECC----------------------
T ss_pred EEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEEEEEEEEECCCCccchh-------hhhhhhhh
Confidence 4799999999999999999998765 366777877753 45666654 56889998543111 11223467
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...+.. .+.+..++..+ ...
T Consensus 73 ~~~~i~v~d~~~~~s-~~~~~~~~~~~----------------------------------------~~~---------- 101 (166)
T 3q72_A 73 GDAYVIVYSVTDKGS-FEKASELRVQL----------------------------------------RRA---------- 101 (166)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHH----------------------------------------HHC----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH----------------------------------------HHh----------
Confidence 899999998765422 11122111110 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+.... +...+.. ....+.+||++|.|++++.+.|.+.+
T Consensus 102 --------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~ 162 (166)
T 3q72_A 102 --------------RQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162 (166)
T ss_dssp --------------C---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred --------------cCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHH
Confidence 001247999999999997432 2222222 24578899999999999999998765
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=118.32 Aligned_cols=153 Identities=16% Similarity=0.135 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC------------eeEEEecCCCccccccCCchhH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------TKIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g------------~~i~~~d~~g~~~~~~~~~~~~ 130 (317)
.+|+|+|++|||||||+|.|++........|..+.+.....+.+++ ..+.++||||.... .
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~-------~ 98 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-------R 98 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-------H
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH-------H
Confidence 4799999999999999999998754333333334444445555553 46889999984221 1
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHh
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEY 210 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l 210 (317)
......++.+|.+++++|...... ...+..++..+
T Consensus 99 ~~~~~~~~~~d~iilV~D~~~~~s-~~~~~~~l~~i-------------------------------------------- 133 (217)
T 2f7s_A 99 SLTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQL-------------------------------------------- 133 (217)
T ss_dssp HHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTC--------------------------------------------
T ss_pred hHHHHHhcCCCEEEEEEECcCHHH-HHHHHHHHHHH--------------------------------------------
Confidence 122345678999999999865422 12222222221
Q ss_pred cccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHH
Q 021103 211 KIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 211 ~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
... ......|+++|+||+|+... ++...+.+ ....+.+||+++.|++++.+.|
T Consensus 134 ~~~--------------------~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l 193 (217)
T 2f7s_A 134 QAN--------------------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETL 193 (217)
T ss_dssp CCC--------------------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHH
T ss_pred HHh--------------------cCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHH
Confidence 000 00024799999999999743 22333322 2468899999999999999999
Q ss_pred HHHh
Q 021103 284 WEEM 287 (317)
Q Consensus 284 ~~~l 287 (317)
.+.+
T Consensus 194 ~~~i 197 (217)
T 2f7s_A 194 LDLI 197 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=117.57 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++...+ ..+..|+.+.....+.+++. .+.++||||...... .....+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC--------CCEEEEEEEETTEEEEEEEEECTTCTTCTT-------TGGGGCTTC
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC-CcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhcCCC
Confidence 58999999999999999999987644 33445555555556777774 577889999643211 112345679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 98 d~~i~v~d~~~~ 109 (207)
T 2fv8_A 98 DVILMCFSVDSP 109 (207)
T ss_dssp CEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999987653
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=111.22 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|.+|||||||++.+++..... +..|+.+.....+.+++.. +.++||||... ...++.+
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~------------~~~~~~~ 73 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGSYQV--LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD------------AKFSGWA 73 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSCCCC--CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC------------HHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCC--cCCCcceeEEEEEEECCEEEEEEEEECCCCch------------hHHHHhC
Confidence 479999999999999999999865431 3334444445567777754 67799998532 1234679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...+.. ...+..+++. +..+.
T Consensus 74 d~~ilv~D~~~~~s-~~~~~~~~~~-----------------------------------------i~~~~--------- 102 (178)
T 2iwr_A 74 DAVIFVFSLEDENS-FQAVSRLHGQ-----------------------------------------LSSLR--------- 102 (178)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH-----------------------------------------HHHHH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH-----------------------------------------HHHHH---------
Confidence 99999999865432 1122221111 11100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCC-------hhhHHHHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-------IDDVDKLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-------~~~~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|.||+|+.. .++...+.. ....+.+||+++.|++++.+.+.+.+
T Consensus 103 ------------~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 103 ------------GEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167 (178)
T ss_dssp ------------CSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred ------------hcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence 00012579999999999831 233333322 23578899999999999999987654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-15 Score=136.63 Aligned_cols=62 Identities=11% Similarity=0.090 Sum_probs=47.9
Q ss_pred ccccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHH
Q 021103 170 LNKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDV 231 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~ 231 (317)
.+.++..||+||+||+.+| +++||||++||+.....+++.+. ...++|++||+..+.+.+|.
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~ 290 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADL 290 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCce
Confidence 3456789999999999766 78999999999998666555443 23389999999776666554
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-15 Score=140.82 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=45.4
Q ss_pred cccCCcccccceeeeeeE---------------eeecCCCCCCCHHHHHHHHHHh---cccC-cEEEecCCCChhh
Q 021103 171 NKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEY---KIHN-AEVLFREDATVDD 227 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia---------------lilDEPt~~LD~~~~~~~l~~l---~~~~-~~i~~shd~~~~~ 227 (317)
++++.+|||||+||+.|| +++||||++||+.....+++.+ ...+ ++|++|||.....
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~ 349 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSE 349 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHT
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHH
Confidence 567889999999999863 8999999999999876655544 3334 9999999976543
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-13 Score=117.32 Aligned_cols=153 Identities=20% Similarity=0.170 Sum_probs=96.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||++.|++........|..+.+.....+.+++ ..+.++||||...... .....++.+
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 86 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRA-------ITSAYYRGA 86 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTC-------CCGGGTTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhh-------hHHHHhccC
Confidence 4799999999999999999998765544556666666667788887 4678999999533211 112345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +.
T Consensus 87 d~vilV~D~~~~~s-~~~~~~~l~~--------------------------------------------i~--------- 112 (223)
T 3cpj_B 87 VGALIVYDISKSSS-YENCNHWLSE--------------------------------------------LR--------- 112 (223)
T ss_dssp CEEEEEEC-CCHHH-HHHHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEeCCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999998765422 1112222211 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. . .....|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 113 ---------~-~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 175 (223)
T 3cpj_B 113 ---------E-N--ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIY 175 (223)
T ss_dssp ---------H-H--CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHT
T ss_pred ---------H-h--CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 0 0 0124799999999999642 22233322 235778999999999999999987763
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=99.53 E-value=4.1e-14 Score=117.36 Aligned_cols=151 Identities=16% Similarity=0.158 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+++++|++|+|||||++.+++... ..+++.|+.+.....+.+++.. +.++||||..... ......++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~ 79 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-------RLRPLSYRG 79 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSCC-C----------CBCCCC-------CEEECCCC-CTTT-------TTGGGGGTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCC-CCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-------hhHHhhccC
Confidence 46899999999999999999997653 3455666655444444555544 5589999953211 112234577
Q ss_pred CcEEEEEecCCCchhhHHHHH-HHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGHRQILT-KELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~-~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|.+++++|........ .+. .++.. +
T Consensus 80 ~d~~i~v~d~~~~~s~~-~~~~~~~~~--------------------------------------------~-------- 106 (182)
T 3bwd_D 80 ADVFILAFSLISKASYE-NVSKKWIPE--------------------------------------------L-------- 106 (182)
T ss_dssp CSEEEEEEETTCHHHHH-HHHHTHHHH--------------------------------------------H--------
T ss_pred CCEEEEEEECCCHHHHH-HHHHHHHHH--------------------------------------------H--------
Confidence 99999999976542211 111 11110 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh---------------HHHHh---cCCCeEEEeccccccHHHHH
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---------------VDKLA---RQPNSVVISCNLKLNLDRLL 280 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---------------~~~l~---~~~~~v~iSa~~~~~i~~l~ 280 (317)
.......|+++|.||+|+..... ...+. .....+.+||+++.|++++.
T Consensus 107 --------------~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 172 (182)
T 3bwd_D 107 --------------KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF 172 (182)
T ss_dssp --------------HHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHH
T ss_pred --------------HHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHH
Confidence 00011479999999999864322 12222 12367889999999999999
Q ss_pred HHHHHHh
Q 021103 281 ARMWEEM 287 (317)
Q Consensus 281 ~~i~~~l 287 (317)
+.|.+.+
T Consensus 173 ~~l~~~i 179 (182)
T 3bwd_D 173 DAAIRVV 179 (182)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998764
|
| >1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.4e-14 Score=133.57 Aligned_cols=149 Identities=21% Similarity=0.288 Sum_probs=98.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC-------CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~-------~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
.+++++|..|+|||||+++|+|.. .+....+|+|.+.....+.+++..+.++||||..+ +......
T Consensus 20 ~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~-------~~~~~~~ 92 (482)
T 1wb1_A 20 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 92 (482)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHH-------HHHHHHH
Confidence 589999999999999999999876 23456778999988888888999999999999632 2234455
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..+|.+++++|+......+. .+.+. +++.
T Consensus 93 ~~~~aD~~ilVvda~~g~~~qt--~e~l~-----------------------------------------~~~~------ 123 (482)
T 1wb1_A 93 AADIIDLALIVVDAKEGPKTQT--GEHML-----------------------------------------ILDH------ 123 (482)
T ss_dssp HTTSCCEEEEEEETTTCSCHHH--HHHHH-----------------------------------------HHHH------
T ss_pred HHhhCCEEEEEEecCCCccHHH--HHHHH-----------------------------------------HHHH------
Confidence 6778999999999865321110 01110 0000
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------H-Hhc-----CCCeEEEeccccccHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------K-LAR-----QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~-l~~-----~~~~v~iSa~~~~~i~~l~~~ 282 (317)
...|.++|+||+|+...+..+ . +.. ..+++++||++|.|+++|.+.
T Consensus 124 ---------------------~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~ 182 (482)
T 1wb1_A 124 ---------------------FNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNL 182 (482)
T ss_dssp ---------------------TTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHH
T ss_pred ---------------------cCCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHH
Confidence 136789999999998754322 1 111 246899999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.++
T Consensus 183 L~~~i~ 188 (482)
T 1wb1_A 183 IITTLN 188 (482)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 988764
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.6e-13 Score=113.04 Aligned_cols=152 Identities=19% Similarity=0.162 Sum_probs=94.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.|++........+..+.+.....+.+++ ..+.++||||..... ......++.+
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~~~ 98 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYR-------AITSAYYRGA 98 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTC-------TTHHHHHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhh-------hhhHHHhccC
Confidence 4799999999999999999998764322222222223333445544 457889999974321 1122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +..
T Consensus 99 d~vi~v~D~~~~~s-~~~~~~~l~~--------------------------------------------i~~-------- 125 (193)
T 2oil_A 99 VGALLVFDLTKHQT-YAVVERWLKE--------------------------------------------LYD-------- 125 (193)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HHT--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999865322 1111111111 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 126 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 186 (193)
T 2oil_A 126 -------------HAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186 (193)
T ss_dssp -------------TSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred -------------hcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00124799999999999743 22223322 23578899999999999999987754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-13 Score=115.13 Aligned_cols=82 Identities=17% Similarity=0.238 Sum_probs=56.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|.+|+|||||++.+++...+ ..+..|+.......+.+++. .+.++|+||...... .....+..+
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 97 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQFP-EVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDR-------LRPLSYPDT 97 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCC-SSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCC-cccCCcccceEEEEEEECCEEEEEEEEECCCchhHHH-------HHHHhcCCC
Confidence 48999999999999999999987644 23333433334456777775 577899999532111 112245679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 98 d~~i~v~d~~~~ 109 (201)
T 2gco_A 98 DVILMCFSIDSP 109 (201)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999987653
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.9e-14 Score=116.13 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=98.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+++|++|||||||+|.+.+.... ...| |.......+.+++..+.++||||....... ....++.+|
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~--t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~-------~~~~~~~~d 91 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLGDVV-TTVP--TVGVNLETLQYKNISFEVWDLGGQTGVRPY-------WRCYFSDTD 91 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSCCE-EECS--STTCCEEEEEETTEEEEEEEECCSSSSCCC-------CSSSSTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCC-CcCC--CCceEEEEEEECCEEEEEEECCCCHhHHHH-------HHHHhhcCC
Confidence 458999999999999999999765432 1122 444556678888899999999996432111 112346799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|...+..- ..+...+..+ + ..
T Consensus 92 ~ii~v~d~~~~~s~-~~~~~~~~~~----------------------------------------~---~~--------- 118 (189)
T 2x77_A 92 AVIYVVDSTDRDRM-GVAKHELYAL----------------------------------------L---DE--------- 118 (189)
T ss_dssp EEEEEEETTCCTTH-HHHHHHHHHH----------------------------------------H---TC---------
T ss_pred EEEEEEeCCCHHHH-HHHHHHHHHH----------------------------------------H---hh---------
Confidence 99999998654321 1111111110 0 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHh-----cC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLA-----RQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~-----~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+... +++.... .. ...+.+||+++.|++++.+.|.+.+.
T Consensus 119 ------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 183 (189)
T 2x77_A 119 ------------DELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR 183 (189)
T ss_dssp ------------STTTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ------------hhcCCCeEEEEEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence 00124799999999999864 2222111 11 14788999999999999999987663
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.2e-13 Score=114.75 Aligned_cols=152 Identities=20% Similarity=0.191 Sum_probs=100.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|+||||||||+|+++|...+....|..+.+...|.+.++|.++. ++|++|..... ....+ .++.+
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~----~~~~~---~~~~~ 102 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYR----AITSA---YYRGA 102 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSS----CCCHH---HHTTC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchh----hhhHH---HhhcC
Confidence 47999999999999999999999877666777778888999999998654 58999864321 11122 23567
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|...... .+.+..++.. +.
T Consensus 103 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 128 (191)
T 1oix_A 103 VGALLVYDIAKHLT-YENVERWLKE--------------------------------------------LR--------- 128 (191)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 77888887654321 1111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcCC--CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQP--NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~~--~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... +....+...+ ..+.+||+++.+++++.+.|.+.+
T Consensus 129 ----------~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 129 ----------DH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp ----------HH--SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 00 0124689999999998642 2223333333 356689999999999999987653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.6e-13 Score=111.63 Aligned_cols=153 Identities=14% Similarity=0.138 Sum_probs=92.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|++|+|||||+|.+++.... ..+.+++|. ....+.+++. .+.++|+||...... . ......++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~D~~g~~~~~~---~--~~~~~~~~~ 77 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGEDV--YERTLTVDGEDTTLVVVDTWEAEKLDK---S--WSQESCLQG 77 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-----CCCSSSSE--EEEEEEETTEEEEEEEECCC----------C--HHHHHTTTS
T ss_pred EEEEEECCCCccHHHHHHHHhcCCCccccCccccce--eEEEEEECCEEEEEEEEecCCCCccch---h--hhHHhhccc
Confidence 47999999999999999999987643 344455543 3456777775 567899999643100 0 111234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++++...... ...+..++.. +..
T Consensus 78 ~~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------l~~------- 105 (175)
T 2nzj_A 78 GSAYVIVYSIADRGS-FESASELRIQ--------------------------------------------LRR------- 105 (175)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHH-------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HHH-------
Confidence 899999998765322 1111111111 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+.. ....+.+||++|.|++++.+.|.+.+
T Consensus 106 ------------~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 106 ------------TH-QADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQL 167 (175)
T ss_dssp ------------CC-----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------hh-ccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence 00 01247999999999997532 2222221 23578899999999999999998765
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-13 Score=109.77 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++... ...++.|+.+.....+.+++..+ .++|+||...... .....++.+
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 90 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQKIF-VDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRTG 90 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 4799999999999999999997643 34566666666677778888764 4599999532111 112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +...
T Consensus 91 d~~i~v~d~~~~~s-~~~~~~~~~~----------------------------------------~~~~----------- 118 (183)
T 3kkq_A 91 DGFLIVYSVTDKAS-FEHVDRFHQL----------------------------------------ILRV----------- 118 (183)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH----------------------------------------HHHh-----------
Confidence 99999999865421 1111111111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEecc-ccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCN-LKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~-~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||+ ++.|++++.+.|.+.+
T Consensus 119 -----------~--~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i 180 (183)
T 3kkq_A 119 -----------K--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180 (183)
T ss_dssp -----------H--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -----------c--CCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHH
Confidence 0 1125799999999998742 22222222 2568899999 9999999999998765
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=6.2e-13 Score=111.33 Aligned_cols=154 Identities=17% Similarity=0.146 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++||||..... . ......++.+
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~-----~~~~~~~~~~ 94 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFR-K-----SMVQHYYRNV 94 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHH-T-----TTHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhh-h-----hhhHHHhcCC
Confidence 58999999999999999999976654444555555666677778774 67899999953211 0 1122345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|....... ..+..++.. +...
T Consensus 95 d~iilv~D~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 122 (189)
T 1z06_A 95 HAVVFVYDMTNMASF-HSLPAWIEE----------------------------------------CKQH----------- 122 (189)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH----------------------------------------HHHh-----------
Confidence 999999998653221 111111111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEecccc---ccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLK---LNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~---~~i~~l~~~i~~~l 287 (317)
. .....|+++|+||+|+... ++...+.. ....+.+||+++ .|++++.+.|.+.+
T Consensus 123 -----------~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i 186 (189)
T 1z06_A 123 -----------L--LANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186 (189)
T ss_dssp -----------C--CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred -----------c--CCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence 0 0124799999999999643 22333322 236889999999 99999998886654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=111.05 Aligned_cols=146 Identities=16% Similarity=0.084 Sum_probs=94.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.+++..... .+. .|.+.....+.++|.. +.++||+|.... . .++.+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------~---~~~~~ 86 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQ-EES-PEGGRFKKEIVVDGQSYLLLIRDEGGPPEL---------Q---FAAWV 86 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCC-CCC-TTCEEEEEEEEETTEEEEEEEEECSSSCCH---------H---HHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCC-CcC-CCcceEEEEEEECCEEEEEEEEECCCChhh---------h---eecCC
Confidence 589999999999999999888765332 122 2334444677888865 566999985321 1 44678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++.. +..
T Consensus 87 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~~-------- 113 (184)
T 3ihw_A 87 DAVVFVFSLEDEIS-FQTVYNYFLR--------------------------------------------LCS-------- 113 (184)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HHT--------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HHH--------
Confidence 99999999875422 1122222211 100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCC-------hhhHHHHhc-C--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-------IDDVDKLAR-Q--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-------~~~~~~l~~-~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ......|+++|.||+|+.. .++...+.. . ...+.+||+++.|++++.+.+.+.+
T Consensus 114 -----------~-~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i 178 (184)
T 3ihw_A 114 -----------F-RNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKV 178 (184)
T ss_dssp -----------T-SCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred -----------h-cCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence 0 0012479999999999842 223333322 2 4578899999999999999987765
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=116.69 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=100.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||++.+++... ..+++.|+.+.....+.+++. .+.++||||...... .....++.+
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 81 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSR-------LRPLSYRGA 81 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC---------CGGGTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCC-CccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHH-------HHHhhccCC
Confidence 4799999999999999999997653 356667776666667777764 678999999643211 112245779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|.............++.. +.
T Consensus 82 d~~ilv~d~~~~~s~~~~~~~~~~~--------------------------------------------~~--------- 108 (212)
T 2j0v_A 82 DIFVLAFSLISKASYENVLKKWMPE--------------------------------------------LR--------- 108 (212)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHH--------------------------------------------HH---------
Confidence 9999999976543211110011111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-------------HHHHhc---CCCeEEEeccccccHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-------------VDKLAR---QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-------------~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
......|+++|.||+|+..... ...+.. ....+.+||+++.|++++.+.|.
T Consensus 109 -------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~ 175 (212)
T 2j0v_A 109 -------------RFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAI 175 (212)
T ss_dssp -------------HHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHH
Confidence 0011479999999999865321 222221 23678899999999999999998
Q ss_pred HHhC
Q 021103 285 EEMG 288 (317)
Q Consensus 285 ~~l~ 288 (317)
+.+.
T Consensus 176 ~~~~ 179 (212)
T 2j0v_A 176 KVVL 179 (212)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 8763
|
| >3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.7e-14 Score=138.09 Aligned_cols=83 Identities=19% Similarity=0.229 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCc-------------------------------cccceeeeeeEEEEECCee
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAAS-------------------------------YEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~-------------------------------~p~tT~~~~~G~i~~~g~~ 110 (317)
..+|+|+|.+|+|||||+|.|++....+.. .+|+|++.....+...+..
T Consensus 167 ~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~~ 246 (611)
T 3izq_1 167 HLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRAN 246 (611)
T ss_dssp CCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSCE
T ss_pred ceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCce
Confidence 468999999999999999999977544332 2688999998899998999
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+.++||||... +.......+..+|++++++|+..
T Consensus 247 ~~iiDTPG~e~-------f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 247 FTIVDAPGHRD-------FVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp EEEEECCSSSC-------HHHHHTTTSSCCSEEEEEEECSH
T ss_pred EEEEECCCCcc-------cHHHHHHHHhhcCceEEEEECCC
Confidence 99999999743 22344556778999999999864
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-13 Score=113.58 Aligned_cols=152 Identities=20% Similarity=0.179 Sum_probs=98.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|+||||||||+++|+|...+....|..+.++..|.+.++|.. +.++|++|...... . ....++.+
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~--~-----~~~~~~~~ 78 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR--I-----TSAYYRGA 78 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC--C-----CHHHHTTC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhh--h-----hHHHHhcC
Confidence 479999999999999999999987655555666677889999999975 45789998532111 1 11233567
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|...... ...+..++.. +.
T Consensus 79 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 104 (199)
T 2f9l_A 79 VGALLVYDIAKHLT-YENVERWLKE--------------------------------------------LR--------- 104 (199)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 88888888754321 1111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcCC--CeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQP--NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~~--~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|+||+|+... ++...+...+ ..+.+||+++.+++++.+.|.+.+
T Consensus 105 ----------~~--~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 105 ----------DH--ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp ----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------Hh--cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00 0114689999999999642 2223333323 356699999999999999987765
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-13 Score=110.60 Aligned_cols=154 Identities=21% Similarity=0.220 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|++|||||||+|.+++...... +..|+-......+.+++. .+.++||||..... ......+..+
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~-------~~~~~~~~~~ 75 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKGTFRES-YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 75 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCCCSS-CCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC-CCCCccccEEEEEEECCEEEEEEEEECCCchhhH-------HHHHHhcccC
Confidence 4799999999999999999998653211 112211222233455554 57889999964311 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++....... +.+..++.. +..
T Consensus 76 ~~~i~v~d~~~~~~~-~~~~~~~~~-----------------------------------------i~~----------- 102 (172)
T 2erx_A 76 HAFILVYSITSRQSL-EELKPIYEQ-----------------------------------------ICE----------- 102 (172)
T ss_dssp SEEEEEEETTCHHHH-HTTHHHHHH-----------------------------------------HHH-----------
T ss_pred CEEEEEEECcCHHHH-HHHHHHHHH-----------------------------------------HHH-----------
Confidence 999999987653211 111111100 000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
........|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 103 -----------~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 103 -----------IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK 166 (172)
T ss_dssp -----------HHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred -----------HhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHh
Confidence 00011247999999999986432 2222221 235788999999999999999988764
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-14 Score=122.77 Aligned_cols=153 Identities=18% Similarity=0.157 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|||||||+|.|++........|.+|.+.....+.+++. .+.++||||...... .....++.+
T Consensus 34 ~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 106 (199)
T 3l0i_B 34 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT-------ITSSYYRGA 106 (199)
T ss_dssp EEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCC-------CSCC--CCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHH-------HHHHHhhcC
Confidence 47999999999999999999987766666788888888888889884 578899999533211 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... .+.+..++..+ ..
T Consensus 107 d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~-------- 133 (199)
T 3l0i_B 107 HGIIVVYDVTDQES-FNNVKQWLQEI--------------------------------------------DR-------- 133 (199)
T ss_dssp SEEEECC-CCCSHH-HHHHHHHHHHH--------------------------------------------HS--------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------HH--------
Confidence 99999999875432 11222222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+.... ....+.. ....+.+||+++.|++++.+.|.+.+.
T Consensus 134 -------------~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~ 195 (199)
T 3l0i_B 134 -------------YASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK 195 (199)
T ss_dssp -------------CC-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred -------------hccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 001247999999999997442 2222322 245788999999999999999877653
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.8e-13 Score=113.13 Aligned_cols=154 Identities=17% Similarity=0.115 Sum_probs=93.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.+++........|..+.+.....+.+++. .+.++|+||.... .......++.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-------~~~~~~~~~~ 100 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERF-------RSIAKSYFRK 100 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTC-------HHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcch-------hhhHHHHHhh
Confidence 568999999999999999999987533222222223333455667664 5789999995321 1122334677
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|....... ..+..++.. +..
T Consensus 101 ~d~iilv~d~~~~~s~-~~~~~~~~~-----------------------------------------i~~---------- 128 (199)
T 2p5s_A 101 ADGVLLLYDVTCEKSF-LNIREWVDM-----------------------------------------IED---------- 128 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HHH----------
T ss_pred CCEEEEEEECCChHHH-HHHHHHHHH-----------------------------------------HHH----------
Confidence 9999999997654221 111111111 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----------hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----------~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|+||+|+... ++.+.+.. ....+.+||+++.|++++.+.|.+.
T Consensus 129 ------------~--~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~ 194 (199)
T 2p5s_A 129 ------------A--AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194 (199)
T ss_dssp ------------H--C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHH
T ss_pred ------------h--cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 0 0124799999999998621 11222221 2357889999999999999999876
Q ss_pred hC
Q 021103 287 MG 288 (317)
Q Consensus 287 l~ 288 (317)
+.
T Consensus 195 i~ 196 (199)
T 2p5s_A 195 VK 196 (199)
T ss_dssp HT
T ss_pred HH
Confidence 53
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=123.10 Aligned_cols=59 Identities=22% Similarity=0.285 Sum_probs=37.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccc------cceeeeeeEEE--EECCe--eEEEecCCCccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYE------FTTLTCIPGII--HYNDT--KIQLLDLPGIIE 121 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p------~tT~~~~~G~i--~~~g~--~i~~~d~~g~~~ 121 (317)
.+|+|+|.+|+|||||+|+|++......++| ..|........ ..+|. .+.++||||+.+
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d 77 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGD 77 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccc
Confidence 4799999999999999999998876655553 44444444444 44553 788999999854
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-13 Score=122.45 Aligned_cols=89 Identities=15% Similarity=0.178 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
+.+|+|+|.+|||||||+|.+++...+ +++++++|++...+.+.+ ++..+.++||||....... . ........++.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~-~~~~~~~~~~~ 80 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMEN-Y-FTKQKDHIFQM 80 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHH-H-HTTTHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhh-h-hhhHHHHHhcc
Confidence 358999999999999999998887544 678999999999999887 5678899999996431000 0 00112234578
Q ss_pred CcEEEEEecCCCc
Q 021103 140 SDIVLMVLDASKS 152 (317)
Q Consensus 140 ~d~i~~v~~~~~~ 152 (317)
+|.+++++|....
T Consensus 81 ad~vi~V~D~t~~ 93 (307)
T 3r7w_A 81 VQVLIHVFDVEST 93 (307)
T ss_dssp CSEEEEEEETTCS
T ss_pred CCEEEEEEECCCh
Confidence 9999999998754
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=117.19 Aligned_cols=155 Identities=16% Similarity=0.172 Sum_probs=98.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|.+|||||||+|.|++.... ..++.|+.......+.+++ ..+.++||||...... .....++.
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-------~~~~~~~~ 95 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGEFS-EGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI-------LPYSFIIG 95 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCC-SCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCC-------CCGGGTTT
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCCCC-CCCCCccceEEEEEEEECCEEEEEEEEECCCccchHH-------HHHHHHhc
Confidence 458999999999999999999987644 4555565555555555544 4578999999543211 12234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++..+ ..
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~~------- 123 (201)
T 3oes_A 96 VHGYVLVYSVTSLHS-FQVIESLYQKL--------------------------------------------HE------- 123 (201)
T ss_dssp CCEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------HC-------
T ss_pred CCEEEEEEeCCCHHH-HHHHHHHHHHH--------------------------------------------HH-------
Confidence 999999999865422 11222222111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|+||+|+.... +...+.. ....+.+||+++.|++++.+.|.+.+..
T Consensus 124 -----------~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 124 -----------GH--GKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR 187 (201)
T ss_dssp ------------------CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred -----------hc--CCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 00 01247999999999987432 2222221 2457889999999999999999887743
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3e-13 Score=113.39 Aligned_cols=153 Identities=14% Similarity=0.063 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccce------eeeeeEEE-------EECC--eeEEEecCCCccccccCCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT------LTCIPGII-------HYND--TKIQLLDLPGIIEGASEGK 127 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT------~~~~~G~i-------~~~g--~~i~~~d~~g~~~~~~~~~ 127 (317)
.+|+|+|++|||||||+|.+.|.... .+..++ ..++.|.- .+++ ..+.++||||.....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~~--~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~---- 88 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVPE--GRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN---- 88 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSCG--GGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS----
T ss_pred cEEEEECCCCCCHHHHHHHHHhhccc--cccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH----
Confidence 47999999999999999999987643 121111 11222211 1222 457889999953211
Q ss_pred hhHHHHHhhhccCcEEEEEecCCCchhh--HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHH
Q 021103 128 GRGRQVIAVSKSSDIVLMVLDASKSEGH--RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQ 205 (317)
Q Consensus 128 ~~~~~~~~~~~~~d~i~~v~~~~~~~~~--~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~ 205 (317)
......++.+|.+++++|....... ...+.. +..
T Consensus 89 ---~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~-----------------------------------------l~~ 124 (198)
T 3t1o_A 89 ---ASRKLILRGVDGIVFVADSAPNRLRANAESMRN-----------------------------------------MRE 124 (198)
T ss_dssp ---HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHH-----------------------------------------HHH
T ss_pred ---HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHH-----------------------------------------HHH
Confidence 1222356789999999998633111 111110 111
Q ss_pred HHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHHhcC--C-CeEEEeccccccHHHH
Q 021103 206 ILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKLARQ--P-NSVVISCNLKLNLDRL 279 (317)
Q Consensus 206 ~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l~~~--~-~~v~iSa~~~~~i~~l 279 (317)
.+..+ .......|+++|.||+|+... ++...+.+. . ..+.+||+++.|++++
T Consensus 125 ~l~~~----------------------~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 182 (198)
T 3t1o_A 125 NLAEY----------------------GLTLDDVPIVIQVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFET 182 (198)
T ss_dssp HHHHT----------------------TCCTTSSCEEEEEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHH
T ss_pred HHHhh----------------------ccccCCCCEEEEEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHH
Confidence 11111 011235799999999999754 333333322 2 6789999999999999
Q ss_pred HHHHHHHh
Q 021103 280 LARMWEEM 287 (317)
Q Consensus 280 ~~~i~~~l 287 (317)
.+.|.+.+
T Consensus 183 ~~~l~~~i 190 (198)
T 3t1o_A 183 LKEVSRLV 190 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987765
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-14 Score=122.37 Aligned_cols=151 Identities=13% Similarity=0.079 Sum_probs=98.4
Q ss_pred cEEEEEcCCCCcHHHHHHH-HhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTL-LTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~-L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|||||||+|. +.|.... ..+.+++|.......+...+..+.++||||...... .....++.+
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 88 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYYIQA 88 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSC-------CCHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhH-------HHHHHHhcC
Confidence 4799999999999999999 5555433 566778887776554433345678899999532111 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++|...... ...+..++.. +.
T Consensus 89 ~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~--------- 114 (221)
T 3gj0_A 89 QCAIIMFDVTSRVT-YKNVPNWHRD--------------------------------------------LV--------- 114 (221)
T ss_dssp CEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred CEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999999875422 1111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|+||+|+....... .+. .....+.+||+++.|++++.+.|.+.+
T Consensus 115 -------------~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l 173 (221)
T 3gj0_A 115 -------------RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173 (221)
T ss_dssp -------------HHSTTCCEEEEEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHH
T ss_pred -------------HhCCCCCEEEEEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 001147999999999997542211 111 134578899999999999999998775
|
| >3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-13 Score=122.52 Aligned_cols=152 Identities=15% Similarity=0.112 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|.+|+|||||++.+++... +..+| |+......+.+.+..+.++||||-.... ......++.+|
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~-~~~~p--T~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ad 234 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEI-VTTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQ 234 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCC-EEEEE--ETTEEEEEEEETTEEEEEEECC-----C-------CSHHHHHTTEE
T ss_pred cceEEEECCCCccHHHHHHHHhCCCC-CCccc--ccceEEEEEecCcEEEEEEECCCCHhHH-------HHHHHHhccCC
Confidence 45899999999999999999987653 23344 7777778888889999999999942211 11223457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|......-. .+...+.. ++..
T Consensus 235 ~vilV~D~~~~~s~~-~~~~~~~~----------------------------------------~~~~------------ 261 (329)
T 3o47_A 235 GLIFVVDSNDRERVN-EAREELMR----------------------------------------MLAE------------ 261 (329)
T ss_dssp EEEEEEETTCSSSHH-HHHHHHHH----------------------------------------HHTC------------
T ss_pred EEEEEEECCchHHHH-HHHHHHHH----------------------------------------HHhh------------
Confidence 999999986432211 11111110 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHhcC-------CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLARQ-------PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~~~-------~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|+||+|+......+ ..... ..++.+||++|.|++++.+.|.+.+.
T Consensus 262 ------------~~~~~~piilV~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~ 326 (329)
T 3o47_A 262 ------------DELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR 326 (329)
T ss_dssp ------------GGGTTCEEEEEEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred ------------hccCCCeEEEEEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence 001247999999999998643222 21111 13788999999999999999988764
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-13 Score=111.63 Aligned_cols=152 Identities=18% Similarity=0.172 Sum_probs=99.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.+++.... ..+..|+.+.....+.+++. .+.++|+||... . ......++.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----~---~~~~~~~~~ 98 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKRFI-WEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-----T---IQREGHMRW 98 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSCCC-SCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-----C---HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC-cccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-----c---cchhhhhcc
Confidence 468999999999999999999986532 34455554445556777764 478899999754 1 122334567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. + .
T Consensus 99 ~d~iilv~D~~~~~s-~~~~~~~~~~----------------------------------------i-~----------- 125 (196)
T 2atv_A 99 GEGFVLVYDITDRGS-FEEVLPLKNI----------------------------------------L-D----------- 125 (196)
T ss_dssp CSEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------H-H-----------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHH----------------------------------------H-H-----------
Confidence 899999999865422 1111111111 0 0
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccc-cHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~-~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++...+.+ ....+.+||+++. |++++.+.|.+.+
T Consensus 126 ----------~~~--~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i 189 (196)
T 2atv_A 126 ----------EIK--KPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 189 (196)
T ss_dssp ----------HHH--TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ----------Hhh--CCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHH
Confidence 000 0125799999999999753 22222221 2357889999999 9999999997765
|
| >3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.3e-13 Score=124.67 Aligned_cols=152 Identities=19% Similarity=0.239 Sum_probs=96.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeee-----EEE--------------EECCeeEEEecCCCccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIP-----GII--------------HYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~-----G~i--------------~~~g~~i~~~d~~g~~~ 121 (317)
..+|+++|.+|+|||||+|+|+|.... ...++.+|..... ..+ ......+.++||||..+
T Consensus 8 ~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~~ 87 (403)
T 3sjy_A 8 EVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEV 87 (403)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcHH
Confidence 458999999999999999999996532 3334444331100 000 01125788999999532
Q ss_pred cccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHH
Q 021103 122 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEK 201 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~ 201 (317)
+.......+..+|.+++++|+.......+ ..+.+.
T Consensus 88 -------~~~~~~~~~~~~D~~ilVvda~~~~~~~q-t~~~~~------------------------------------- 122 (403)
T 3sjy_A 88 -------LMATMLSGAALMDGAILVVAANEPFPQPQ-TREHFV------------------------------------- 122 (403)
T ss_dssp -------GHHHHHHHHTTCSEEEEEEETTSCSSCHH-HHHHHH-------------------------------------
T ss_pred -------HHHHHHHHHhhCCEEEEEEECCCCCCcHH-HHHHHH-------------------------------------
Confidence 22344556678999999999875421111 111110
Q ss_pred HHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhc--------CCCeEEEe
Q 021103 202 LCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLAR--------QPNSVVIS 269 (317)
Q Consensus 202 ~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~--------~~~~v~iS 269 (317)
++..+ ..+|+++|+||+|+...++.. .+.+ ..+++++|
T Consensus 123 ----~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vS 172 (403)
T 3sjy_A 123 ----ALGII--------------------------GVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVS 172 (403)
T ss_dssp ----HHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECB
T ss_pred ----HHHHc--------------------------CCCCEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 00000 125889999999998765332 2211 24689999
Q ss_pred ccccccHHHHHHHHHHHhC
Q 021103 270 CNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 270 a~~~~~i~~l~~~i~~~l~ 288 (317)
|++|.|+++|++.|.+.+.
T Consensus 173 A~~g~gi~~L~~~l~~~l~ 191 (403)
T 3sjy_A 173 ALHKINIDSLIEGIEEYIK 191 (403)
T ss_dssp TTTTBSHHHHHHHHHHHSC
T ss_pred CCCCcChHHHHHHHHHhCC
Confidence 9999999999999988654
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=110.38 Aligned_cols=157 Identities=17% Similarity=0.193 Sum_probs=95.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||+|.|++..... .+..|+-......+.+++. .+.++||||..... ......+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~ 79 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKGTFRD-TYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFP-------AMQRLSISK 79 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHSCCCC-TTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCH-------HHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHcCCCCC-cccCccccceeEEEEECCEEEEEEEEeCCChHHhH-------HHHHHhhcc
Confidence 4589999999999999999999865331 1211211222233455554 57889999953211 112234567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++++....... ..+..++. .+..
T Consensus 80 ~d~~i~v~d~~~~~s~-~~~~~~~~-----------------------------------------~i~~---------- 107 (199)
T 2gf0_A 80 GHAFILVFSVTSKQSL-EELGPIYK-----------------------------------------LIVQ---------- 107 (199)
T ss_dssp CSEEEEEEETTCHHHH-HTTHHHHH-----------------------------------------HHHH----------
T ss_pred CCEEEEEEECcCHHHH-HHHHHHHH-----------------------------------------HHHH----------
Confidence 8999999987653211 11111110 0100
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCee
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGLV 290 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~~ 290 (317)
........|+++|+||+|+...+ +...+.. ....+.+||+++.|++++.+.|.+.+...
T Consensus 108 ------------~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 108 ------------IKGSVEDIPVMLVGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp ------------HHSCGGGSCEEEEEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred ------------HhcCCCCCCEEEEEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence 11111247999999999997532 2222221 23578899999999999999999887543
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-12 Score=108.99 Aligned_cols=154 Identities=12% Similarity=0.082 Sum_probs=98.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|++|||||||++.+++... ...++.|+.+.....+.+++. .+.++||+|...... ....++.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~--------~~~~~~~ 91 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTKRF-ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRN--------CERYLNW 91 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCC--------THHHHTT
T ss_pred eEEEEEECCCCCcHHHHHHHHHhCCC-CcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchh--------HHHHHhh
Confidence 35899999999999999999998653 356666766665556677765 467899999643211 1124567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...... .+.+..++..+
T Consensus 92 ~~~~ilv~d~~~~~s-~~~~~~~~~~i----------------------------------------------------- 117 (187)
T 3c5c_A 92 AHAFLVVYSVDSRQS-FDSSSSYLELL----------------------------------------------------- 117 (187)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHHH-----------------------------------------------------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHHH-----------------------------------------------------
Confidence 899999998765321 11222222111
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEec-cccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISC-NLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa-~~~~~i~~l~~~i~~~l 287 (317)
...........|+++|.||+|+... ++...+.+ ....+.+|| +++.|++++.+.|.+.+
T Consensus 118 ---------~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i 184 (187)
T 3c5c_A 118 ---------ALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA 184 (187)
T ss_dssp ---------HHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred ---------HHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence 0000000125799999999999642 22222222 235788999 89999999999997754
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=99.48 E-value=6.7e-13 Score=113.34 Aligned_cols=80 Identities=23% Similarity=0.274 Sum_probs=56.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---CeeEEEecCCCccccccCCchhHH-HHHhhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGR-QVIAVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~-~~~~~~ 137 (317)
..+|+|+|++|+|||||++.+++... ...++.++.+ ...+.++ +..+.++||||..... . .....+
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~~~-------~~~~~~~~ 76 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDS--SAIYKVNNNRGNSLTLIDLPGHESLR-------FQLLDRFK 76 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCE--EEEEECSSTTCCEEEEEECCCCHHHH-------HHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc-ccccCCccee--eEEEEecCCCccEEEEEECCCChhHH-------HHHHHHHH
Confidence 35899999999999999999997653 3455544433 3447776 5678999999964211 1 111236
Q ss_pred ccCcEEEEEecCCC
Q 021103 138 KSSDIVLMVLDASK 151 (317)
Q Consensus 138 ~~~d~i~~v~~~~~ 151 (317)
+.+|.+++++|...
T Consensus 77 ~~~~~~i~v~d~~~ 90 (214)
T 2fh5_B 77 SSARAVVFVVDSAA 90 (214)
T ss_dssp GGEEEEEEEEETTT
T ss_pred hhCCEEEEEEECCC
Confidence 77999999999765
|
| >3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.8e-13 Score=127.25 Aligned_cols=84 Identities=21% Similarity=0.236 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-------------------------------CCccccceeeeeeEEEEECCee
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-------------------------------AASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-------------------------------v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
..+++++|.+|+|||||++.|++.... ....+|+|.+.....+.+++..
T Consensus 17 ~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~~~ 96 (439)
T 3j2k_7 17 HVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEKKH 96 (439)
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCCeE
Confidence 458999999999999999999654321 1122678999888888888999
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.++||||..+. .......+..+|.+++++|+...
T Consensus 97 ~~iiDTPGh~~f-------~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 97 FTILDAPGHKSF-------VPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred EEEEECCChHHH-------HHHHHhhHhhCCEEEEEEECCCC
Confidence 999999996431 23444556789999999998653
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.9e-13 Score=110.65 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=55.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|++|+|||||+|.+++...+ ..+..|+.......+.+++ ..+.++|+||...... .....+..+
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 79 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 79 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhh-------hHHhhcCCC
Confidence 47999999999999999999986543 3333343333344556655 3578899999532110 112245779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 80 ~~~i~v~d~~~~ 91 (184)
T 1m7b_A 80 DAVLICFDISRP 91 (184)
T ss_dssp SEEEEEEETTCH
T ss_pred cEEEEEEECCCH
Confidence 999999998654
|
| >3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.5e-13 Score=131.79 Aligned_cols=83 Identities=29% Similarity=0.319 Sum_probs=63.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC----------------CCC------ccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~----------------~v~------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
..++|+|.+|||||||+|.|++... .+. ..+|+|.......+.+.+..+.++||||..
T Consensus 14 r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (528)
T 3tr5_A 14 RTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPGHA 93 (528)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCCch
Confidence 4799999999999999999962211 011 236788888888999999999999999975
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.. ......++.+|.+++++|+...
T Consensus 94 df~-------~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 94 DFT-------EDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 421 2345567889999999998753
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-14 Score=129.68 Aligned_cols=49 Identities=18% Similarity=0.045 Sum_probs=35.8
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc--------CCCeEEEeccccccHHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~--------~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
..|+++|+||+|+..... .+.+.. +..++++||+++.|++++.+.|.+.
T Consensus 192 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 192 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp CSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred CCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 479999999999985432 222221 1246679999999999999998763
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=5.9e-13 Score=114.20 Aligned_cols=153 Identities=16% Similarity=0.102 Sum_probs=96.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+|+|.+|||||||++.+++.... ..+..|+.+.....+.+++ ..+.++||+|...... .....++.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~ 98 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKDCYP-ETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDN-------VRPLCYSD 98 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTT-------TGGGGCTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCC-CCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHH-------HHHHHcCC
Confidence 458999999999999999999876533 4445555444444555655 4577899999532111 11234577
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|..........+..++.. +.
T Consensus 99 ~d~~i~v~d~~~~~s~~~~~~~~~~~--------------------------------------------i~-------- 126 (214)
T 3q3j_B 99 SDAVLLCFDISRPETVDSALKKWRTE--------------------------------------------IL-------- 126 (214)
T ss_dssp CSEEEEEEETTCTHHHHHHHTHHHHH--------------------------------------------HH--------
T ss_pred CeEEEEEEECcCHHHHHHHHHHHHHH--------------------------------------------HH--------
Confidence 99999999987543211111111111 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----------------hhHHHHhc---CCCeEEEecccccc-HHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----------------DDVDKLAR---QPNSVVISCNLKLN-LDR 278 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----------------~~~~~l~~---~~~~v~iSa~~~~~-i~~ 278 (317)
......|+++|.||+|+... ++...+.. ....+.+||+++.| +++
T Consensus 127 --------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~ 192 (214)
T 3q3j_B 127 --------------DYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHS 192 (214)
T ss_dssp --------------HHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHH
T ss_pred --------------HhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHH
Confidence 00124799999999999642 12222221 22578899999998 999
Q ss_pred HHHHHHHHhC
Q 021103 279 LLARMWEEMG 288 (317)
Q Consensus 279 l~~~i~~~l~ 288 (317)
+.+.+.+.+.
T Consensus 193 lf~~l~~~~~ 202 (214)
T 3q3j_B 193 IFRTASMLCL 202 (214)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988763
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=113.63 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=96.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC--CeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~--g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-.+|+|+|++|+|||||+|.+++........|..+.+.....+.++ +..+.++|+||.... .......++.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-------~~~~~~~~~~ 95 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERY-------RTITTAYYRG 95 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHC-------HHHHHHHHTT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHH-------HHHHHHHHcc
Confidence 3589999999999999999999876432222322333333445554 456889999984211 1123345678
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.+++++|...... .+.+..++.. +.
T Consensus 96 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------i~-------- 122 (191)
T 3dz8_A 96 AMGFILMYDITNEES-FNAVQDWATQ--------------------------------------------IK-------- 122 (191)
T ss_dssp CCEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECcCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 999999999865321 1111111111 10
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+... ++...+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 123 -----------~~--~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i 184 (191)
T 3dz8_A 123 -----------TY--SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAI 184 (191)
T ss_dssp -----------HH--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------Hh--cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 00 0125799999999998643 22222222 23578899999999999999998765
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=116.89 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=68.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccce-eeeeeEEEEECC----eeEEEecCCCccccccCCchhHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTT-LTCIPGIIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT-~~~~~G~i~~~g----~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
..+|+|+|++|+|||||+|.+++.... ..+++.|+ .+.....+.+++ ..+.++||||.... ......
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-------~~~~~~ 92 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLY-------KEQISQ 92 (208)
T ss_dssp EEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHH-------HHHHST
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHH-------HHHHHH
Confidence 358999999999999999999987322 34555555 366777888875 36889999996321 112223
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..+|.+++++|...... ...+..++..+ .
T Consensus 93 ~~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i--------------------------------------------~---- 123 (208)
T 2yc2_C 93 YWNGVYYAILVFDVSSMES-FESCKAWFELL--------------------------------------------K---- 123 (208)
T ss_dssp TCCCCCEEEEEEETTCHHH-HHHHHHHHHHH--------------------------------------------H----
T ss_pred HHhhCcEEEEEEECCCHHH-HHHHHHHHHHH--------------------------------------------H----
Confidence 4677999999999865432 11222222111 0
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCC-h-----hhHHHHhc--CCCeEEEeccc-cccHHHHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG-I-----DDVDKLAR--QPNSVVISCNL-KLNLDRLLARMWEE 286 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~-~-----~~~~~l~~--~~~~v~iSa~~-~~~i~~l~~~i~~~ 286 (317)
..........|+++|+||+|+.. . ++...+.+ ....+.+||++ +.|++++.+.|.+.
T Consensus 124 --------------~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~ 189 (208)
T 2yc2_C 124 --------------SARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189 (208)
T ss_dssp --------------HHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHH
T ss_pred --------------HhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHH
Confidence 00000002579999999999976 2 22333322 23578899999 99999999998775
Q ss_pred h
Q 021103 287 M 287 (317)
Q Consensus 287 l 287 (317)
+
T Consensus 190 ~ 190 (208)
T 2yc2_C 190 F 190 (208)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-13 Score=113.12 Aligned_cols=154 Identities=19% Similarity=0.137 Sum_probs=86.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccc-eeeeeeEEEEE-----CCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFT-TLTCIPGIIHY-----NDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~t-T~~~~~G~i~~-----~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
.+++|+|++|||||||+|.+++...+ .+.+..| +.+...-.+.+ ....+.++||+|....... ...
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-------~~~ 75 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYST-------HPH 75 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTT-------SHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHh-------hHH
Confidence 47999999999999999999997433 2333222 22322222222 2346788999985321110 112
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
.+..++.++++.|..........+..++.. +.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~--------------------------------------------~~---- 107 (184)
T 2zej_A 76 FMTQRALYLAVYDLSKGQAEVDAMKPWLFN--------------------------------------------IK---- 107 (184)
T ss_dssp HHHHSEEEEEEEEGGGCHHHHHTHHHHHHH--------------------------------------------HH----
T ss_pred HccCCcEEEEEEeCCcchhHHHHHHHHHHH--------------------------------------------HH----
Confidence 245678888887765432111122222211 00
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH--------HHHhcC--CC----eEEEeccccc-cHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV--------DKLARQ--PN----SVVISCNLKL-NLDRLL 280 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~--------~~l~~~--~~----~v~iSa~~~~-~i~~l~ 280 (317)
......|+++|.||+|+...... +.+.+. .. .+.+||+++. ++++|.
T Consensus 108 ------------------~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~ 169 (184)
T 2zej_A 108 ------------------ARASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLR 169 (184)
T ss_dssp ------------------HHCTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHH
T ss_pred ------------------hhCCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHH
Confidence 00114789999999999865332 122211 12 6789999996 999999
Q ss_pred HHHHHHhCe
Q 021103 281 ARMWEEMGL 289 (317)
Q Consensus 281 ~~i~~~l~~ 289 (317)
+.|.+.+..
T Consensus 170 ~~i~~~~~~ 178 (184)
T 2zej_A 170 KTIINESLN 178 (184)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 999887643
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=111.41 Aligned_cols=154 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|.+|+|||||+|.++|... .+..++.++.+.....+.++|..+ .++||+|.... .. ......++.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~-----~~-~l~~~~~~~ 111 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NE-WLHDHCMQV 111 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-----HH-HHHHCCCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcch-----hh-hHHHHHHhh
Confidence 4799999999999999999998654 356667677776677788888764 56899874321 00 011122455
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
++.++++.+...... .+.+..++.. +.
T Consensus 112 a~~~ilVydvt~~~s-f~~~~~~~~~--------------------------------------------l~-------- 138 (211)
T 2g3y_A 112 GDAYLIVYSITDRAS-FEKASELRIQ--------------------------------------------LR-------- 138 (211)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH--------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH--------------------------------------------HH--------
Confidence 788888887654321 1111111110 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh-c-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA-R-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~-~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++...+. . ....+.+||++|.|++++.+.|.+.+
T Consensus 139 -----------~~~-~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i 201 (211)
T 2g3y_A 139 -----------RAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 201 (211)
T ss_dssp -----------TSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------HHh-CCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 000 0124799999999999642 1111221 1 23578899999999999999998765
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.45 E-value=9.2e-13 Score=112.79 Aligned_cols=152 Identities=17% Similarity=0.124 Sum_probs=91.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee-EEEEEC-C--eeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYN-D--TKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~-G~i~~~-g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
.+|+|+|++|||||||+|.|++.... ..+..|+-.... ..+... + ..+.++||||....... ....+.
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~ 83 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVLDGRFE-KNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVL-------KDVYYI 83 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCTTCSTT-CEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCC-------CHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchH-------HHHHhh
Confidence 47999999999999999999976533 222222111111 122222 2 56889999996432111 112356
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
.+|.+++++|....... +.+..++..+ .
T Consensus 84 ~~d~~i~v~d~~~~~s~-~~~~~~~~~~-----------------------------------------~---------- 111 (218)
T 4djt_A 84 GASGAILFFDVTSRITC-QNLARWVKEF-----------------------------------------Q---------- 111 (218)
T ss_dssp TCSEEEEEEETTCHHHH-HTHHHHHHHH-----------------------------------------H----------
T ss_pred cCCEEEEEEeCCCHHHH-HHHHHHHHHH-----------------------------------------H----------
Confidence 79999999998754221 1111111110 0
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
... ....|+++|+||+|+..... ...+.. ....+.+||++|.|++++.+.|.+.+.
T Consensus 112 ------------~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 174 (218)
T 4djt_A 112 ------------AVV--GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFT 174 (218)
T ss_dssp ------------HHH--CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHH
T ss_pred ------------Hhc--CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHh
Confidence 000 12479999999999975422 222222 235889999999999999999988763
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=111.51 Aligned_cols=82 Identities=20% Similarity=0.246 Sum_probs=55.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|++|+|||||+|.+++...+ ..+..|+.......+.+++ ..+.++||||...... .....++.+
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-------~~~~~~~~~ 100 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 100 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCC-CCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhH-------HHHhhccCC
Confidence 58999999999999999999987543 3333343333444566665 4578899999532111 112245779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 101 d~~ilv~D~~~~ 112 (205)
T 1gwn_A 101 DAVLICFDISRP 112 (205)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEECCCH
Confidence 999999998654
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4e-12 Score=107.07 Aligned_cols=154 Identities=19% Similarity=0.176 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
.+|+|+|.+|+|||||+|.++|... .+++++.++.+.....+.++|..+ .++||+|...... . . . ...++.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~-~--~-~--~~~~~~ 80 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENE-W--L-H--DHCMQV 80 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----C-T--T-G--GGHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhh-h--H-H--Hhhccc
Confidence 4799999999999999999998654 356677777777777888888754 5679987532110 0 1 1 112345
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
+|.++++.+...... ...+..++.. +..
T Consensus 81 ~~~~i~v~dv~~~~s-~~~~~~~~~~-----------------------------------------l~~---------- 108 (192)
T 2cjw_A 81 GDAYLIVYSITDRAS-FEKASELRIQ-----------------------------------------LRR---------- 108 (192)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH-----------------------------------------HHH----------
T ss_pred CCEEEEEEECCCHHH-HHHHHHHHHH-----------------------------------------HHH----------
Confidence 788888877654321 1111111110 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh-cC-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA-RQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~-~~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.. .....|+++|.||+|+.... +...+. .. ...+.+||++|.|++++.+.+.+.+
T Consensus 109 ------------~~-~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 109 ------------AR-QTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQV 170 (192)
T ss_dssp ------------HT-TTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------hh-CCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHH
Confidence 00 01247899999999986421 111221 12 3567899999999999999987765
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.44 E-value=3.2e-14 Score=119.00 Aligned_cols=53 Identities=8% Similarity=-0.098 Sum_probs=43.2
Q ss_pred ccccCCcccccceeeeee---------E-----eeecC--CCCCCCHHHHHHHHHHhcccC-cEEEecCC
Q 021103 170 LNKRPPQIYFKKKKTGGI---------S-----FNSTL--PLTHVDEKLCYQILHEYKIHN-AEVLFRED 222 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~i---------a-----lilDE--Pt~~LD~~~~~~~l~~l~~~~-~~i~~shd 222 (317)
.++++..||+||+||+.+ + +++|| ||++||+.....+.+.+...+ ++|+++|.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~ 139 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPI 139 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCS
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEcc
Confidence 466788999999999643 2 79999 999999998888888887655 48888873
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.8e-14 Score=123.17 Aligned_cols=30 Identities=30% Similarity=0.230 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+..|++++|+||||||||||+|+|+|...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 566799999999999999999999999975
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.9e-14 Score=124.28 Aligned_cols=128 Identities=13% Similarity=-0.061 Sum_probs=66.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecC-CCccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDL-PGIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~-~g~~~~~~~~~~~~~ 131 (317)
.++++.+..|+.++|+||||||||||+++|+|.. | |.+.+ |.++.-... ++. ..+.++.+
T Consensus 14 ~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-------------G~i~~-g~~~~~~~~~~~~----~~~i~~~~ 74 (218)
T 1z6g_A 14 LVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-------------NYFYF-SVSCTTRKKREKE----KEGVDYYF 74 (218)
T ss_dssp --------CCCCEEEECSTTSSHHHHHHHHHHHS-T-------------TTEEE-CCCEECSCCCSSC----CBTTTBEE
T ss_pred cCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-------------CcEEE-eecccCCCCCccc----ccCCeEEE
Confidence 5778888889999999999999999999999976 3 34455 444321100 011 11112111
Q ss_pred HHHhhh----ccCcEEEEEe-cCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeee-----E---------eee
Q 021103 132 QVIAVS----KSSDIVLMVL-DASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGI-----S---------FNS 191 (317)
Q Consensus 132 ~~~~~~----~~~d~i~~v~-~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~i-----a---------lil 191 (317)
+....+ ...+++.+.. ...........+.+.++.... .++ ..|||||+||+.+ + +++
T Consensus 75 ~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~L 151 (218)
T 1z6g_A 75 IDKTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVL 151 (218)
T ss_dssp CCHHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHH
T ss_pred CCHHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHH
Confidence 111111 1223333221 110000112345566665443 222 5789999999988 4 467
Q ss_pred cCCCCCCCHHH
Q 021103 192 TLPLTHVDEKL 202 (317)
Q Consensus 192 DEPt~~LD~~~ 202 (317)
||||+++|.+.
T Consensus 152 de~~~~~d~~~ 162 (218)
T 1z6g_A 152 LSRLLTRNTEN 162 (218)
T ss_dssp HHHHHHTCCCC
T ss_pred HHHHHhcCCCC
Confidence 88999888644
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5e-13 Score=133.86 Aligned_cols=88 Identities=26% Similarity=0.407 Sum_probs=60.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccc--------------eeeeeeE-----------------------
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFT--------------TLTCIPG----------------------- 102 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~t--------------T~~~~~G----------------------- 102 (317)
.+.+|+|+|.+|+|||||+|+|+|... +++..|+| |++...|
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 356899999999999999999999874 67788888 4432111
Q ss_pred ----------------EEEECC----eeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 103 ----------------IIHYND----TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 103 ----------------~i~~~g----~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.+.+.. ..+.++||||+..... ........++.+|++++++++...
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~----~~~~~~~~i~~aD~vL~Vvda~~~ 213 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA----RNELSLGYVNNCHAILFVMRASQP 213 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT----CHHHHTHHHHSSSEEEEEEETTST
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh----HHHHHHHHHHhCCEEEEEEeCCCc
Confidence 111111 3588999999865321 112334456789999999997643
|
| >2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-12 Score=118.92 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=62.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEE--EecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQ--LLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~--~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++++|.+|+|||||++.+++... ...++.||.+.....+.+++..+. ++||||..... ......+..+
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~~~~~~~~~ 227 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYD-------RLRPLSYPQT 227 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC-CCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGT-------TTGGGGCTTC
T ss_pred eEEEEECCCCCChHHHHHHHHhCCC-CcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhh-------HHHHHhccCC
Confidence 5799999999999999999986543 456788888888888888887655 89999964321 1122345779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.+++++|....
T Consensus 228 d~~i~v~d~~~~ 239 (332)
T 2wkq_A 228 DVFLICFSLVSP 239 (332)
T ss_dssp SEEEEEEETTCH
T ss_pred CEEEEEEeCCCH
Confidence 999999998654
|
| >1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4.7e-12 Score=119.36 Aligned_cols=151 Identities=18% Similarity=0.205 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEEC-----------------C------eeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYN-----------------D------TKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~~-----------------g------~~i~~~d~ 116 (317)
.+++++|..|+|||||++.|+|.... ....++.|.+.......+. | ..+.++||
T Consensus 11 ~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDt 90 (410)
T 1kk1_A 11 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 90 (410)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEEC
Confidence 47999999999999999999987532 2224677776644333331 1 57899999
Q ss_pred CCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCC
Q 021103 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLT 196 (317)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~ 196 (317)
||..+ +.......+..+|.+++++|+.......+. .+.+.
T Consensus 91 PGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~-------------------------------- 130 (410)
T 1kk1_A 91 PGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQT-REHLM-------------------------------- 130 (410)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHHH-HHHHH--------------------------------
T ss_pred CChHH-------HHHHHHhhhhhCCEEEEEEECCCCCCChhH-HHHHH--------------------------------
Confidence 99532 123344556678999999998643201110 11110
Q ss_pred CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhH----HHH---h-----cCCC
Q 021103 197 HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDV----DKL---A-----RQPN 264 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~----~~l---~-----~~~~ 264 (317)
++..+ ...|+++|+||+|+...++. +++ . ...+
T Consensus 131 ---------~~~~~--------------------------~~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ 175 (410)
T 1kk1_A 131 ---------ALQII--------------------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 175 (410)
T ss_dssp ---------HHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred ---------HHHHc--------------------------CCCcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCe
Confidence 00000 12578999999999875431 222 1 1346
Q ss_pred eEEEeccccccHHHHHHHHHHHhC
Q 021103 265 SVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 265 ~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
++++||+++.|++.|++.|.+.+.
T Consensus 176 ~i~vSA~~g~gi~~L~~~l~~~~~ 199 (410)
T 1kk1_A 176 IIPISALHGANIDVLVKAIEDFIP 199 (410)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEeeCCCCCCHHHHHHHHHHhCC
Confidence 899999999999999999988654
|
| >3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=9.8e-13 Score=126.61 Aligned_cols=83 Identities=18% Similarity=0.223 Sum_probs=62.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-------------------------------CCCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------------------------EAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-------------------------------~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||++.|++... .....+|+|.+.....+...+..+
T Consensus 34 ~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~ 113 (483)
T 3p26_A 34 LSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRANF 113 (483)
T ss_dssp EEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCceE
Confidence 5799999999999999999976521 123346888888888888888899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+ +.......+..+|.+++++|+...
T Consensus 114 ~iiDTPG~~~-------f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 114 TIVDAPGHRD-------FVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEECCCCCGG-------GHHHHHHHHTTCSEEEEEEECCC-
T ss_pred EEEECCCcHH-------HHHHHHHhhhhCCEEEEEEECCCC
Confidence 9999999743 123445567889999999998653
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=8.4e-13 Score=119.73 Aligned_cols=52 Identities=13% Similarity=0.013 Sum_probs=35.4
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc----C-CCe---EEEeccc---cccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR----Q-PNS---VVISCNL---KLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~----~-~~~---v~iSa~~---~~~i~~l~~~i~~~l~~ 289 (317)
..|+++|+||+|+..... .+.+.. + .+. .++|+.+ +.|++++.+.+.+.++.
T Consensus 198 ~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 198 GKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp CSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 479999999999985433 333322 1 233 4456666 78999999999888753
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-13 Score=125.94 Aligned_cols=50 Identities=22% Similarity=0.159 Sum_probs=37.5
Q ss_pred eeeeEEEecccCCChhhHH----HHh------c------CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDVD----KLA------R------QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~~----~l~------~------~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+....... .+. . .+.++++||++|.|++.|.+.|.+.+.
T Consensus 195 ~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 195 VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 5889999999998643221 221 1 245788999999999999999988653
|
| >2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.6e-12 Score=118.45 Aligned_cols=70 Identities=19% Similarity=0.180 Sum_probs=56.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
.++++|.+|+|||||+++|+ ..++|.+.....+.+++..+.++||||..+. .......+..+|.+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f-------~~~~~~~~~~aD~a 87 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKT-------LKSLITALNISDIA 87 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSSSEEEEEECTTTTTC-------HHHHHHHHHTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCCeEEEEEECCChHHH-------HHHHHHHHHHCCEE
Confidence 89999999999999999998 4567777776667777888999999997431 23344556789999
Q ss_pred EEEec
Q 021103 144 LMVLD 148 (317)
Q Consensus 144 ~~v~~ 148 (317)
++++|
T Consensus 88 ilVvd 92 (370)
T 2elf_A 88 VLCIP 92 (370)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99998
|
| >2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=5e-12 Score=119.02 Aligned_cols=84 Identities=21% Similarity=0.198 Sum_probs=60.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC-----------------CccccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA-----------------ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v-----------------~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
..+++++|.+|+|||||++.|++..... ...++.|.+.....+...+..+.++||||..+.
T Consensus 11 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f-- 88 (405)
T 2c78_A 11 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY-- 88 (405)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG--
T ss_pred eEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH--
Confidence 3579999999999999999999841100 014577777755555666788999999997531
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|.+++++|+...
T Consensus 89 -----~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 89 -----IKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp -----HHHHHHHHTTCSSEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 23344556789999999998653
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=3.5e-14 Score=120.58 Aligned_cols=82 Identities=18% Similarity=0.190 Sum_probs=57.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..+|+++|++|||||||++.+++... ...+..|+.+.....+.+++.. +.++||||..... ......+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-------~~~~~~~~~ 101 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQ 101 (204)
Confidence 46899999999999999999986543 3456667766666666776655 4488999953211 111223567
Q ss_pred CcEEEEEecCCC
Q 021103 140 SDIVLMVLDASK 151 (317)
Q Consensus 140 ~d~i~~v~~~~~ 151 (317)
+|.+++++|...
T Consensus 102 ~d~iilv~D~~~ 113 (204)
T 3th5_A 102 TDVFLICFSLVS 113 (204)
Confidence 888988888654
|
| >1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.38 E-value=9.2e-12 Score=117.32 Aligned_cols=152 Identities=18% Similarity=0.216 Sum_probs=89.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEE---------------C--C------eeEEEec
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHY---------------N--D------TKIQLLD 115 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~---------------~--g------~~i~~~d 115 (317)
..+++++|..|+|||||++.|+|.... ....+|.|.+.......+ . | ..+.++|
T Consensus 8 ~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiD 87 (408)
T 1s0u_A 8 EVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVD 87 (408)
T ss_dssp CEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEE
Confidence 458999999999999999999987532 122456677654333222 1 1 5688999
Q ss_pred CCCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCC
Q 021103 116 LPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPL 195 (317)
Q Consensus 116 ~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt 195 (317)
|||..+ +.......+..+|.+++++|+.......+. .+.+.
T Consensus 88 tPGh~~-------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt-~e~l~------------------------------- 128 (408)
T 1s0u_A 88 SPGHET-------LMATMLSGASLMDGAILVIAANEPCPQPQT-KEHLM------------------------------- 128 (408)
T ss_dssp CSSHHH-------HHHHHHTTCSCCSEEEEEEETTSCSSCHHH-HHHHH-------------------------------
T ss_pred CCCHHH-------HHHHHHHhHhhCCEEEEEEECCCCCCCchh-HHHHH-------------------------------
Confidence 999532 112334445678999999998653211111 01110
Q ss_pred CCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh----HHH---Hh-c----CC
Q 021103 196 THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD----VDK---LA-R----QP 263 (317)
Q Consensus 196 ~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~----~~~---l~-~----~~ 263 (317)
++..+ ...|+++|+||+|+...++ .++ +. . ..
T Consensus 129 ----------~~~~l--------------------------~~~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~ 172 (408)
T 1s0u_A 129 ----------ALEIL--------------------------GIDKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENA 172 (408)
T ss_dssp ----------HHHHT--------------------------TCCCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTC
T ss_pred ----------HHHHc--------------------------CCCeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCC
Confidence 00000 1257899999999986432 222 21 1 34
Q ss_pred CeEEEeccccccHHHHHHHHHHHhC
Q 021103 264 NSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 264 ~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.++++||++|.|+++|.+.|.+.+.
T Consensus 173 ~~i~vSA~~g~gi~~L~~~l~~~i~ 197 (408)
T 1s0u_A 173 PIIPISAHHEANIDVLLKAIQDFIP 197 (408)
T ss_dssp CEEEC------CHHHHHHHHHHHSC
T ss_pred eEEEeeCCCCCCHHHHHHHHHHhCC
Confidence 6899999999999999999988654
|
| >3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.7e-13 Score=132.71 Aligned_cols=151 Identities=21% Similarity=0.182 Sum_probs=103.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
..+|+++|.+|+|||||++.|++........|++|.+.....+.+ ++..+.++||||...... .....+..+
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-------~~~~~~~~a 76 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-------MRARGTQVT 76 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-------SBBSSSBSB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-------HHHHHHccC
Confidence 458999999999999999999987765567889999987777776 567899999999532111 111234668
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.+++++++......+ . .+.+. .+
T Consensus 77 D~vILVVDa~dg~~~q-t-~e~l~--------------------------------------------~~---------- 100 (537)
T 3izy_P 77 DIVILVVAADDGVMKQ-T-VESIQ--------------------------------------------HA---------- 100 (537)
T ss_dssp SSCEEECBSSSCCCHH-H-HHHHH--------------------------------------------HH----------
T ss_pred CEEEEEEECCCCccHH-H-HHHHH--------------------------------------------HH----------
Confidence 9999999876532111 0 01110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh------hHHHH----hcC---CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID------DVDKL----ARQ---PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~------~~~~l----~~~---~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. ....|+++|+||+|+.... ++... ..+ ..++++||++|.|+++|.+.|...+
T Consensus 101 ------------~--~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~ 166 (537)
T 3izy_P 101 ------------K--DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA 166 (537)
T ss_dssp ------------H--TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred ------------H--HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence 0 1146899999999997421 11111 111 2477899999999999999998876
Q ss_pred Ce
Q 021103 288 GL 289 (317)
Q Consensus 288 ~~ 289 (317)
..
T Consensus 167 ~~ 168 (537)
T 3izy_P 167 EM 168 (537)
T ss_dssp TT
T ss_pred hc
Confidence 53
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=6.9e-12 Score=111.08 Aligned_cols=87 Identities=20% Similarity=0.269 Sum_probs=64.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh--cc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS--KS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~--~~ 139 (317)
.+|+|+|.+|+|||||+|+|+|... .+++++++|.......+.++|..+.++||||+.+...............+ ..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~ 116 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRT 116 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCC
Confidence 4799999999999999999999875 57889999999999999999999999999998653322211111111111 25
Q ss_pred CcEEEEEecC
Q 021103 140 SDIVLMVLDA 149 (317)
Q Consensus 140 ~d~i~~v~~~ 149 (317)
+|+++++.+.
T Consensus 117 ~~~il~V~~~ 126 (262)
T 3def_A 117 IDVLLYVDRL 126 (262)
T ss_dssp ECEEEEEEES
T ss_pred CCEEEEEEcC
Confidence 7888888654
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-12 Score=121.54 Aligned_cols=80 Identities=6% Similarity=0.084 Sum_probs=39.8
Q ss_pred eeeeEeeecCCC-CCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH---
Q 021103 184 TGGISFNSTLPL-THVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL--- 259 (317)
Q Consensus 184 r~~ialilDEPt-~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l--- 259 (317)
++.+.+++|||| .+||+... .+++.+. ...|+|+|+||+|+....++..+
T Consensus 138 ~~~vlL~ldePt~~~L~~~d~-~~lk~L~-------------------------~~v~iIlVinK~Dll~~~ev~~~k~~ 191 (418)
T 2qag_C 138 RVQCCLYFIAPSGHGLKPLDI-EFMKRLH-------------------------EKVNIIPLIAKADTLTPEECQQFKKQ 191 (418)
T ss_dssp -CCEEEEECCC-CCSCCHHHH-HHHHHHT-------------------------TTSEEEEEEESTTSSCHHHHHHHHHH
T ss_pred CeeEEEEEecCcccCCCHHHH-HHHHHHh-------------------------ccCcEEEEEEcccCccHHHHHHHHHH
Confidence 445569999999 68998652 3444332 14689999999999876544321
Q ss_pred -----h-cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 260 -----A-RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 260 -----~-~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
. ....++.+|+.++.+++++...+.+.++.
T Consensus 192 i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iPf 227 (418)
T 2qag_C 192 IMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL 227 (418)
T ss_dssp HHHHHHHHTCCCCCCC-----------------CCE
T ss_pred HHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCCc
Confidence 1 12456778999999999887777776654
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-11 Score=103.46 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=52.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEE--EC---CeeEEEecCCCccccccCCchhHHHHHhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH--YN---DTKIQLLDLPGIIEGASEGKGRGRQVIAV 136 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~--~~---g~~i~~~d~~g~~~~~~~~~~~~~~~~~~ 136 (317)
..+|+|+|.+|||||||++.+.+...+. +..+.+...+.+. +. ...+.++||+|....... .......
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~----~~~~~~~ 92 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHKMSPN---ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDP----TFDYEMI 92 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSCCCGG---GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCT----TCCHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCCc---ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhh----hhhcccc
Confidence 4689999999999999999999865432 2222222222222 22 257889999995331111 0000234
Q ss_pred hccCcEEEEEecCCCc
Q 021103 137 SKSSDIVLMVLDASKS 152 (317)
Q Consensus 137 ~~~~d~i~~v~~~~~~ 152 (317)
++.+|.+++++|....
T Consensus 93 ~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 93 FRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHTCSEEEEEEETTSC
T ss_pred cccCCEEEEEEECCCc
Confidence 5779999999998654
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-11 Score=109.86 Aligned_cols=87 Identities=18% Similarity=0.246 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh--hhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA--VSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~--~~~~ 139 (317)
.+++++|.+|+|||||+|.|+|... .+++++++|.++....+..++..+.++||||+.+.............. ....
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~ 119 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT 119 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCC
Confidence 4799999999999999999999874 578899999999888888899999999999986532211111111111 1236
Q ss_pred CcEEEEEecC
Q 021103 140 SDIVLMVLDA 149 (317)
Q Consensus 140 ~d~i~~v~~~ 149 (317)
+|+++++++.
T Consensus 120 ~d~il~v~~~ 129 (270)
T 1h65_A 120 IDVLLYVDRL 129 (270)
T ss_dssp ECEEEEEEES
T ss_pred CCEEEEEEeC
Confidence 8889888654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-13 Score=123.77 Aligned_cols=112 Identities=9% Similarity=0.016 Sum_probs=78.5
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI 134 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~ 134 (317)
+++.+..|+.++|+|+||||||||+|+|+|...+ .+|.|.++|... +..+.
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~-----------~~g~i~i~~~~e--~~~~~---------------- 214 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK-----------EERIISIEDTEE--IVFKH---------------- 214 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT-----------TSCEEEEESSCC--CCCSS----------------
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC-----------CCcEEEECCeec--ccccc----------------
Confidence 3455567899999999999999999999999987 789998876431 00000
Q ss_pred hhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeE---------eeecCCCCCCCHHHHHH
Q 021103 135 AVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEKLCYQ 205 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~~~~~ 205 (317)
..+.+-++.. +|++||.+++ +++|||++. ...+
T Consensus 215 ----~~~~i~~~~g------------------------------gg~~~r~~la~aL~~~p~ilildE~~~~----e~~~ 256 (330)
T 2pt7_A 215 ----HKNYTQLFFG------------------------------GNITSADCLKSCLRMRPDRIILGELRSS----EAYD 256 (330)
T ss_dssp ----CSSEEEEECB------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCST----HHHH
T ss_pred ----chhEEEEEeC------------------------------CChhHHHHHHHHhhhCCCEEEEcCCChH----HHHH
Confidence 0011111110 5677777665 889999982 3456
Q ss_pred HHHHhcccC-cEEEecCCCChhhHHHHHh
Q 021103 206 ILHEYKIHN-AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 206 ~l~~l~~~~-~~i~~shd~~~~~~~~~~~ 233 (317)
+++.+...+ ++++++|+....+.++++.
T Consensus 257 ~l~~~~~g~~tvi~t~H~~~~~~~~dri~ 285 (330)
T 2pt7_A 257 FYNVLCSGHKGTLTTLHAGSSEEAFIRLA 285 (330)
T ss_dssp HHHHHHTTCCCEEEEEECSSHHHHHHHHH
T ss_pred HHHHHhcCCCEEEEEEcccHHHHHhhhhe
Confidence 777776555 7999999988888887753
|
| >3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.4e-13 Score=133.68 Aligned_cols=82 Identities=23% Similarity=0.256 Sum_probs=37.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-------------------------------CCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------------AASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-------------------------------v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+|+|+|.+|+|||||++.|++.... ....+|+|++...+.+.+++..+
T Consensus 178 ~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~~~i 257 (592)
T 3mca_A 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIY 257 (592)
T ss_dssp EEEEEECCSSSTHHHHHHHHHHHHHCC-----------------------------------------------------
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCCeEE
Confidence 46999999999999999999753211 11156889999888888888899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+... .....+..+|.+++++|+..
T Consensus 258 ~iiDTPGh~~f~~-------~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 258 EIGDAPGHRDFIS-------GMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -CCEEESSSEEEE-------ECCC-------CCSEEEEEE
T ss_pred EEEECCChHHHHH-------HHHHHHhhCCEEEEEEECCC
Confidence 9999999753211 12233466899999888753
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=127.36 Aligned_cols=159 Identities=16% Similarity=0.166 Sum_probs=83.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
.+||+|+||||||||+++|+|...|. .+|.|.++|.++.....+.... .....++.+|...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~----------~sG~vt~~g~~i~~~~~~~~~~-~~~~i~~v~Q~~~-------- 107 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPR----------GSGIVTRCPLVLKLKKLVNEDK-WRGKVSYQDYEIE-------- 107 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-----------------CCCSCEEEEEEECSSSSC-CEEEESCC---CC--------
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCC----------CCCeEEEcCEEEEEecCCcccc-ceeEEeeeccccc--------
Confidence 59999999999999999999997551 4899999999876655332111 1111122121100
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeee--E-------eeecCC------CCCCCHHHH---HH
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGI--S-------FNSTLP------LTHVDEKLC---YQ 205 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~i--a-------lilDEP------t~~LD~~~~---~~ 205 (317)
........+.+......++. ....+| .+.+.+ + +++||| |++||+... .+
T Consensus 108 -----l~~~~tv~e~i~~~~~~~~~----~~~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~ 175 (608)
T 3szr_A 108 -----ISDASEVEKEINKAQNAIAG----EGMGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKT 175 (608)
T ss_dssp -----CCCHHHHHTTHHHHHHHHHC----SSSCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHhcC----Cccccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHH
Confidence 00111111112222222211 001111 122222 1 789999 999998764 45
Q ss_pred HHHHhc-cc-C-cEEEecCCCChh-----hHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 206 ILHEYK-IH-N-AEVLFREDATVD-----DLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 206 ~l~~l~-~~-~-~~i~~shd~~~~-----~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
++..+. .. + .+++++|+.+.. ++++.+. ....++|+|+||+|++..+.
T Consensus 176 li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~--~~g~rtI~VlTK~Dlv~~g~ 231 (608)
T 3szr_A 176 LIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVD--PEGDRTIGILTKPDLVDKGT 231 (608)
T ss_dssp HHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHC--SSCCSEEEEEECGGGSSSSS
T ss_pred HHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHh--hcCCceEEEecchhhcCccc
Confidence 555542 22 3 678889985532 3444443 23578999999999986543
|
| >3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=126.57 Aligned_cols=150 Identities=17% Similarity=0.140 Sum_probs=86.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC------CCccccceeeeeeEEEEEC----CeeEEEecCCCccccccCCchhHHH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE------AASYEFTTLTCIPGIIHYN----DTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~------v~~~p~tT~~~~~G~i~~~----g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+|+|+|.+|||||||+|.+++.... ++...+++..+..|.+.++ +..+.++|+||...... .
T Consensus 42 ~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~-------~ 114 (535)
T 3dpu_A 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHA-------S 114 (535)
T ss_dssp EEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTT-------T
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHH-------H
Confidence 58999999999999999999987632 2222222222222223332 46789999999422111 1
Q ss_pred HHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc
Q 021103 133 VIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI 212 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~ 212 (317)
....++.+|++++++|....... ..+...+..
T Consensus 115 ~~~~l~~~d~ii~V~D~s~~~~~-~~~~~~l~~----------------------------------------------- 146 (535)
T 3dpu_A 115 HQFFMTRSSVYMLLLDSRTDSNK-HYWLRHIEK----------------------------------------------- 146 (535)
T ss_dssp CHHHHHSSEEEEEEECGGGGGGH-HHHHHHHHH-----------------------------------------------
T ss_pred HHHHccCCcEEEEEEeCCCchhH-HHHHHHHHH-----------------------------------------------
Confidence 11235679999999987543211 111111110
Q ss_pred cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HHHHhc--CCCeEEEeccccccHHHHHHHHHH
Q 021103 213 HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VDKLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 213 ~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
.....|+++|.||+|+..... ...... ...++.+||++|.|+++|.+.|.+
T Consensus 147 ----------------------~~~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~ 204 (535)
T 3dpu_A 147 ----------------------YGGKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKS 204 (535)
T ss_dssp ----------------------HSSSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHH
T ss_pred ----------------------hCCCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHH
Confidence 011479999999999975322 222222 234899999999999999999998
Q ss_pred HhCe
Q 021103 286 EMGL 289 (317)
Q Consensus 286 ~l~~ 289 (317)
.+..
T Consensus 205 ~~~~ 208 (535)
T 3dpu_A 205 AVLH 208 (535)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 8754
|
| >1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=115.48 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=54.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-----------CCccccc----------------------eeeeeeEEEEECCe
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-----------AASYEFT----------------------TLTCIPGIIHYNDT 109 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-----------v~~~p~t----------------------T~~~~~G~i~~~g~ 109 (317)
.+++++|.+|+|||||++.|++.... .+.+++| |.+.....+...+.
T Consensus 25 ~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~~~ 104 (434)
T 1zun_B 25 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 104 (434)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred eEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecCCc
Confidence 47999999999999999999865421 2223444 44433334455678
Q ss_pred eEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 110 KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 110 ~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.+.++||||..+. .......+..+|.+++++|+...
T Consensus 105 ~~~iiDtpGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 105 KFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp EEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTC
T ss_pred eEEEEECCChHHH-------HHHHHHHHhhCCEEEEEEECCCC
Confidence 8999999996431 12334456789999999998654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.4e-12 Score=119.05 Aligned_cols=48 Identities=17% Similarity=0.021 Sum_probs=35.1
Q ss_pred eeeeeEEEecccCCChhh--HHHHhc--------CCCeEEEeccccccHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD--VDKLAR--------QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~--~~~l~~--------~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
..|+++|+||+|+..... .+.+.. +..++++||+++.|+++|.+.+.+
T Consensus 197 ~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 197 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred CCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 478999999999985432 222111 224667999999999999998876
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2.4e-12 Score=118.42 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=44.8
Q ss_pred cccCCcccccceeeee------eE---------eeecCCCCCCCHHHHHHHHHHh---ccc-CcEEEecCCCChhhHHH
Q 021103 171 NKRPPQIYFKKKKTGG------IS---------FNSTLPLTHVDEKLCYQILHEY---KIH-NAEVLFREDATVDDLID 230 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~------ia---------lilDEPt~~LD~~~~~~~l~~l---~~~-~~~i~~shd~~~~~~~~ 230 (317)
++++..|||||+||++ ++ +++||||++||+.....+++.+ ... .++|++|||..+.+.||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCC
Confidence 4578899999999653 32 8999999999999866655544 333 38999999976655443
|
| >2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=118.15 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC---------Cc------cccceeeeeeEEEEEC---C--eeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA---------AS------YEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v---------~~------~p~tT~~~~~G~i~~~---g--~~i~~~d~~g~~~~ 122 (317)
..++|+|..|+|||||++.|+.....+ .+ ..|.|.......+.|. | ..+.++||||..+.
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~dF 86 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVDF 86 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHhH
Confidence 479999999999999999997532111 11 2456666655666664 2 56889999997542
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
. ......+..+|.+++++|+......+. ...+.
T Consensus 87 ~-------~ev~r~l~~aD~aILVVDa~~gv~~qt-~~~~~--------------------------------------- 119 (600)
T 2ywe_A 87 S-------YEVSRALAACEGALLLIDASQGIEAQT-VANFW--------------------------------------- 119 (600)
T ss_dssp H-------HHHHHHHHTCSEEEEEEETTTBCCHHH-HHHHH---------------------------------------
T ss_pred H-------HHHHHHHHhCCEEEEEEECCCCccHHH-HHHHH---------------------------------------
Confidence 1 233445678999999999865432111 10000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh--h-HHHHhcC-----CCeEEEeccccc
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID--D-VDKLARQ-----PNSVVISCNLKL 274 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~--~-~~~l~~~-----~~~v~iSa~~~~ 274 (317)
.. . ....|+++|+||+|+.... . .+.+.+. ..++++||++|.
T Consensus 120 -----~a-----------------------~--~~~ipiIvviNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~ 169 (600)
T 2ywe_A 120 -----KA-----------------------V--EQDLVIIPVINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGI 169 (600)
T ss_dssp -----HH-----------------------H--HTTCEEEEEEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTB
T ss_pred -----HH-----------------------H--HCCCCEEEEEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCC
Confidence 00 0 0147899999999997532 1 2233322 137999999999
Q ss_pred cHHHHHHHHHHHhCe
Q 021103 275 NLDRLLARMWEEMGL 289 (317)
Q Consensus 275 ~i~~l~~~i~~~l~~ 289 (317)
|+++|++.|.+.++.
T Consensus 170 GI~~Lle~I~~~lp~ 184 (600)
T 2ywe_A 170 GIEEILEAIVNRIPP 184 (600)
T ss_dssp SHHHHHHHHHHHSCC
T ss_pred CchHHHHHHHHhccc
Confidence 999999999988753
|
| >1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.2e-11 Score=111.76 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC----------------CCccccceeeeeeEEEEECCeeEEEecCCCccccccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE----------------AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~----------------v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 126 (317)
.+++++|.+|+|||||++.|++.... .....+.|.+...-.+...+..+.++||||..+
T Consensus 4 ~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~----- 78 (397)
T 1d2e_A 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHAD----- 78 (397)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHH-----
T ss_pred EEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHH-----
Confidence 47999999999999999999985210 011345666654434445668899999999643
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCc
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.......+..+|.+++++|+...
T Consensus 79 --f~~~~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 79 --YVKNMITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp --HHHHHHHTSSCCSEEEEEEETTTC
T ss_pred --HHHHHHhhHhhCCEEEEEEECCCC
Confidence 112344456789999999998653
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-11 Score=113.53 Aligned_cols=50 Identities=18% Similarity=0.139 Sum_probs=38.0
Q ss_pred eeeeEEEecccCCChhhH----HHHh-----------c-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDV----DKLA-----------R-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~----~~l~-----------~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+...... ..+. . ..+++++||++|.|+++|.+.|.+.+.
T Consensus 218 ~p~ivVlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp GCSEEEEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999754322 1121 1 256899999999999999999988764
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-11 Score=100.98 Aligned_cols=154 Identities=18% Similarity=0.198 Sum_probs=90.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|+|||||++.++...-+....|-...+...-.+.+++. .+.++||+|-.... . -....++.+
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~----~---l~~~~~~~a 86 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFR----S---LIPSYIRDS 86 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCG----G---GHHHHHTTC
T ss_pred EEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhh----h---HHHHHhccc
Confidence 47999999999999999998865432111121122333334556664 45789999843211 1 112345789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... .+.+..++.. +.
T Consensus 87 ~~~ilv~di~~~~S-f~~i~~~~~~--------------------------------------------i~--------- 112 (216)
T 4dkx_A 87 AAAVVVYDITNVNS-FQQTTKWIDD--------------------------------------------VR--------- 112 (216)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH--------------------------------------------HH---------
T ss_pred cEEEEEeecchhHH-HHHHHHHHHH--------------------------------------------HH---------
Confidence 99999988765322 1112222111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. . ....|+++|.||+|+... ++.+.+.+ ....+.+||++|.|++++.+.|.+.+..
T Consensus 113 ---------~~-~--~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 113 ---------TE-R--GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp ---------HH-H--TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC--
T ss_pred ---------Hh-c--CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHh
Confidence 00 0 124789999999998643 23333332 2346779999999999999999887643
|
| >3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.5e-11 Score=119.17 Aligned_cols=149 Identities=18% Similarity=0.249 Sum_probs=89.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC---------C------ccccceeeeeeEEEEEC---C--eeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA---------A------SYEFTTLTCIPGIIHYN---D--TKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v---------~------~~p~tT~~~~~G~i~~~---g--~~i~~~d~~g~~~~ 122 (317)
..++|+|..|+|||||++.|+.....+ . ...|.|.......+.|. | ..+.++||||..+.
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF 84 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDF 84 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHH
Confidence 379999999999999999997632111 1 12456666655666664 2 57889999997442
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHH
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKL 202 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~ 202 (317)
.......+..+|.+++++|+......... ..+
T Consensus 85 -------~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~---------------------------------------- 116 (599)
T 3cb4_D 85 -------SYEVSRSLAACEGALLVVDAGQGVEAQTL-ANC---------------------------------------- 116 (599)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHH----------------------------------------
T ss_pred -------HHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHH----------------------------------------
Confidence 12334456779999999998653221110 000
Q ss_pred HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChh---hHHHHh---cC--CCeEEEeccccc
Q 021103 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDKLA---RQ--PNSVVISCNLKL 274 (317)
Q Consensus 203 ~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~l~---~~--~~~v~iSa~~~~ 274 (317)
... . ....|+++|+||+|+.... ..+.+. .. ..++++||++|.
T Consensus 117 ----~~~----------------------~---~~~ipiIvViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~ 167 (599)
T 3cb4_D 117 ----YTA----------------------M---EMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGV 167 (599)
T ss_dssp ----HHH----------------------H---HTTCEEEEEEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCT
T ss_pred ----HHH----------------------H---HCCCCEEEeeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCC
Confidence 000 0 0147999999999998532 122232 22 248999999999
Q ss_pred cHHHHHHHHHHHhC
Q 021103 275 NLDRLLARMWEEMG 288 (317)
Q Consensus 275 ~i~~l~~~i~~~l~ 288 (317)
|+++|++.|.+.++
T Consensus 168 GI~~Ll~~I~~~lp 181 (599)
T 3cb4_D 168 GVQDVLERLVRDIP 181 (599)
T ss_dssp THHHHHHHHHHHSC
T ss_pred CchhHHHHHhhcCC
Confidence 99999999998875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-12 Score=120.35 Aligned_cols=150 Identities=15% Similarity=0.104 Sum_probs=88.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
++ +.+..|++++|+|+||||||||+++|+|...+ +.|.+.+.|.+.. . .....+....
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~-----------~~g~i~~~G~~~~--------e-v~~~i~~~~~- 121 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASA-----------DIIVLALIGERGR--------E-VNEFLALLPQ- 121 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHH--------H-HHHHHTTSCH-
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CEEEEEEecccHH--------H-HHHHHHhhhh-
Confidence 44 77788999999999999999999999999877 6787776553210 0 0000000000
Q ss_pred HhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc------------cccccCCcccccceeeeeeEeeecCC-CCCCCH
Q 021103 134 IAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL------------RLNKRPPQIYFKKKKTGGISFNSTLP-LTHVDE 200 (317)
Q Consensus 134 ~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l------------~~~~~~~~LS~g~~qr~~ialilDEP-t~~LD~ 200 (317)
..+. ..+.++.....+.. .++...+..+.+ .+-..+..||+|+ |+++++ +.+.| |+++|+
T Consensus 122 -~~~~--~~v~~~~~~~~~~~--~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la-l~~p~~t~Gldp 194 (347)
T 2obl_A 122 -STLS--KCVLVVTTSDRPAL--ERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA-SGEPDVRGGFPP 194 (347)
T ss_dssp -HHHT--TEEEEEECTTSCHH--HHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH-TTCCCCBTTBCH
T ss_pred -hhhh--ceEEEEECCCCCHH--HHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH-cCCCCcccCCCH
Confidence 0111 22333322211111 112111111111 1125678999999 899998 35555 589999
Q ss_pred HHHHHHHHHh---cc--cC------cEEEecCCCChhhHHHHHh
Q 021103 201 KLCYQILHEY---KI--HN------AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 201 ~~~~~~l~~l---~~--~~------~~i~~shd~~~~~~~~~~~ 233 (317)
.....+.+.+ .. .+ +++++|||.+ +.++|.+.
T Consensus 195 ~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~ 237 (347)
T 2obl_A 195 SVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVR 237 (347)
T ss_dssp HHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheE
Confidence 9866655554 32 24 6789999987 77787754
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.1e-12 Score=115.36 Aligned_cols=112 Identities=12% Similarity=-0.034 Sum_probs=68.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
..|.++||+|+||||||||+++|+|...+ ..|. ..+.++...++... ......+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~-----------~~G~-----~~v~~v~qd~~~~~--------~t~~e~~~~ 143 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR-----------WDHH-----PRVDLVTTDGFLYP--------NAELQRRNL 143 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT-----------STTC-----CCEEEEEGGGGBCC--------HHHHHHTTC
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc-----------cCCC-----CeEEEEecCccCCc--------ccHHHHHHH
Confidence 34889999999999999999999999876 2221 12222221111110 011111100
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---------eeecCCCCCCCH
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDE 200 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~ 200 (317)
.. ........+.+.+.+.|+.++- ..+.+++.||+|++||+.++ +++|||+..+|.
T Consensus 144 ~~-----~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 144 MH-----RKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TT-----CTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HH-----hcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 00 0011112234456677777664 33467889999999999876 899999998874
|
| >1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.4e-11 Score=115.34 Aligned_cols=82 Identities=21% Similarity=0.180 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCC-------------------------------ccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAA-------------------------------SYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~-------------------------------~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||++.|++....+. ..+++|.+.....+.+.+..+
T Consensus 7 ~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~~~ 86 (435)
T 1jny_A 7 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 86 (435)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCeEE
Confidence 4799999999999999999986421110 135778887777777788899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+. .......+..+|.+++++|+..
T Consensus 87 ~iiDtpG~~~f-------~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 87 TIIDAPGHRDF-------VKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECST
T ss_pred EEEECCCcHHH-------HHHHHhhhhhcCEEEEEEECCC
Confidence 99999996431 1234456678999999999875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-12 Score=133.16 Aligned_cols=60 Identities=8% Similarity=-0.084 Sum_probs=44.2
Q ss_pred CCcccccceeeeeeE--------eeecCCCCCCCHHHHH----HHHHHhcc--cCcEEEecCCCChhhHHHHHh
Q 021103 174 PPQIYFKKKKTGGIS--------FNSTLPLTHVDEKLCY----QILHEYKI--HNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia--------lilDEPt~~LD~~~~~----~~l~~l~~--~~~~i~~shd~~~~~~~~~~~ 233 (317)
...+|+|++++..++ +++|||++|+|+.... .+++.+.. +.+++++||+.++.++++...
T Consensus 733 ~stfs~em~~~~~il~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~ 806 (918)
T 3thx_B 733 RSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYS 806 (918)
T ss_dssp -CCHHHHHHHHHHHHHHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTT
T ss_pred HHHhhHHHHHHHHHHHhccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcc
Confidence 355667777766554 8999999999997633 45566542 348999999998888888764
|
| >3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=124.25 Aligned_cols=48 Identities=13% Similarity=-0.037 Sum_probs=36.4
Q ss_pred eeeeeEEEecccCCChhhH-HHHh---------cCCCeEEEeccccccHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDV-DKLA---------RQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~-~~l~---------~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
..|+++|+||+|+...+.. ..+. .+..++++||.+|.|+++|.+.|.+
T Consensus 217 g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 217 GQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp CSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred CCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 4799999999999865431 1111 1235788999999999999999976
|
| >1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-12 Score=124.29 Aligned_cols=83 Identities=23% Similarity=0.250 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+++++|.+|+|||||++.|.+.....+..+++|.+.....+.+++..+.++||||....... ....+..+|
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~-------~~~~~~~aD 76 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSM-------RARGAQATD 76 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTS-------BCSSSBSCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHH-------HHHHHhhCC
Confidence 3589999999999999999999865445556788887766666677888999999996432111 112346789
Q ss_pred EEEEEecCCC
Q 021103 142 IVLMVLDASK 151 (317)
Q Consensus 142 ~i~~v~~~~~ 151 (317)
.+++++++..
T Consensus 77 ~aILVVda~~ 86 (501)
T 1zo1_I 77 IVVLVVAADD 86 (501)
T ss_dssp SEEEEEETTT
T ss_pred EEEEEeeccc
Confidence 9999998754
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.6e-11 Score=113.78 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=22.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|+|++|||||||+|+|+|..
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~ 58 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKD 58 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999999964
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.23 E-value=9.6e-11 Score=114.26 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=58.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC---CCCccccceeeee--e---EEEE----------------------------
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCI--P---GIIH---------------------------- 105 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~---~v~~~p~tT~~~~--~---G~i~---------------------------- 105 (317)
-.+|+|+|.+|+|||||+|.|+|... ++++.|.||+... . |.+.
T Consensus 65 ~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~~ 144 (550)
T 2qpt_A 65 KPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRFM 144 (550)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTEE
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccce
Confidence 46899999999999999999999875 4788888866321 0 0010
Q ss_pred ---ECC---eeEEEecCCCccccccCCch----hHHHHHhhhccCcEEEEEecCCC
Q 021103 106 ---YND---TKIQLLDLPGIIEGASEGKG----RGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 106 ---~~g---~~i~~~d~~g~~~~~~~~~~----~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+.+ ..+.++||||+......... +.......+..+|++++++|+..
T Consensus 145 ~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 145 CAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp EEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred EEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 000 35889999998753221111 11223345677999999999864
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.1e-10 Score=116.52 Aligned_cols=86 Identities=22% Similarity=0.234 Sum_probs=62.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCC------------Cc------cccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEA------------AS------YEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v------------~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
...+.+++|+|++|+|||||+++|++...++ .+ ..+.|..+....+.+.+..+.++||||..
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~ 85 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG 85 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc
Confidence 3457799999999999999999999654321 11 23556666677778888899999999964
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
+. .......++.+|..++++|+..
T Consensus 86 ~f-------~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 86 DF-------VGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp GG-------HHHHHHHHHHCSEEEEEEETTT
T ss_pred ch-------HHHHHHHHhhcCcEEEEEcCCc
Confidence 31 1234445667888888888654
|
| >1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=115.07 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=61.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCC-------------------------Cc------cccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEA-------------------------AS------YEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v-------------------------~~------~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|.+|+|||||+|.|++....+ .+ ..|.|.+.....+...+..+
T Consensus 8 ~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~~ 87 (458)
T 1f60_A 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 87 (458)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCceE
Confidence 479999999999999999998642111 01 25778887777777778899
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++||||..+ +.......+..+|.+++++|+..
T Consensus 88 ~iiDtPGh~~-------f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 88 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSH
T ss_pred EEEECCCcHH-------HHHHHHhhhhhCCEEEEEEeCCc
Confidence 9999999532 22334456678999999999864
|
| >2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-10 Score=116.14 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=58.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc---cCCC---------CCc------cccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g---~~~~---------v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
.+++|+|.+|+|||||+|.|++ .... +.+ .+++|+....+.+.+++..+.++||||..+..
T Consensus 11 ~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~df~- 89 (693)
T 2xex_A 11 RNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVDFT- 89 (693)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcchH-
Confidence 4799999999999999999984 3211 222 36788888888899999999999999985421
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
......++.+|.+++++|+...
T Consensus 90 ------~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 90 ------VEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTTB
T ss_pred ------HHHHHHHHHCCEEEEEECCCCC
Confidence 2344556779999999998654
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=9e-11 Score=98.17 Aligned_cols=79 Identities=19% Similarity=0.312 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC---CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v---~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
..+++++|++|||||||+|.|++..... +..|.+|.+. .+..+.++||||........ .......+.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~---~~~~~~~~~ 117 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLRYKL---SDYLKTRAK 117 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------CCTTCSEEEETTCCBSSCCH---HHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------cCCeEEEEECCCCchHHHHH---HHHHHhhcc
Confidence 4589999999999999999999876431 2233333322 46678899999975422111 111222334
Q ss_pred cCcEEEEEecCC
Q 021103 139 SSDIVLMVLDAS 150 (317)
Q Consensus 139 ~~d~i~~v~~~~ 150 (317)
.+|.+++++|..
T Consensus 118 ~~~~~i~v~d~~ 129 (193)
T 2ged_A 118 FVKGLIFMVDST 129 (193)
T ss_dssp GEEEEEEEEETT
T ss_pred cCCEEEEEEECC
Confidence 589999999986
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-11 Score=127.04 Aligned_cols=45 Identities=7% Similarity=-0.164 Sum_probs=35.3
Q ss_pred eeecCCCCCCCHHHH----HHHHHHhcc--cCcEEEecCCCChhhHHHHHh
Q 021103 189 FNSTLPLTHVDEKLC----YQILHEYKI--HNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 189 lilDEPt~~LD~~~~----~~~l~~l~~--~~~~i~~shd~~~~~~~~~~~ 233 (317)
+++|||++|+|+... ..+++.+.. +.+++++||+.++.++++.+.
T Consensus 745 lLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~ 795 (934)
T 3thx_A 745 IIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP 795 (934)
T ss_dssp EEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccc
Confidence 899999999998763 455666653 348999999988888887654
|
| >1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ... | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-10 Score=113.75 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=56.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc---cCCC---------CCc------cccceeeeeeEEEEECCeeEEEecCCCcccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG---THSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGAS 124 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g---~~~~---------v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~ 124 (317)
.+++|+|.+|+|||||++.|+. .... +.+ ..+.|.......+.+.+..+.++||||..+.
T Consensus 13 ~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~df-- 90 (691)
T 1dar_A 13 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVDF-- 90 (691)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTTC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccch--
Confidence 4799999999999999999983 2211 111 4577888777888899999999999997431
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......++.+|.+++++|+...
T Consensus 91 -----~~~~~~~l~~aD~~ilVvDa~~g 113 (691)
T 1dar_A 91 -----TIEVERSMRVLDGAIVVFDSSQG 113 (691)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTTC
T ss_pred -----HHHHHHHHHHCCEEEEEEECCCC
Confidence 12344556789999999998654
|
| >2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-10 Score=109.62 Aligned_cols=83 Identities=25% Similarity=0.305 Sum_probs=57.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC----------------CC------ccccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE----------------AA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~----------------v~------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
.+++|+|.+|+|||||++.|++.... +. ...+.|.......+.+++..+.++||||..
T Consensus 14 ~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~ 93 (529)
T 2h5e_A 14 RTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHE 93 (529)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCCST
T ss_pred CEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCCCh
Confidence 47999999999999999999864211 11 134556666566778889999999999974
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.. ......+..+|.+++++|+...
T Consensus 94 df~-------~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 94 DFS-------EDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp TCC-------HHHHHGGGGCSEEEEEEETTTC
T ss_pred hHH-------HHHHHHHHHCCEEEEEEeCCcc
Confidence 321 2344566889999999998654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.2e-12 Score=118.48 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+++...+|++++|+|+||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~g~V~l~g~d 137 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGD 137 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----------cCCeEEEEeec
Confidence 45666677999999999999999999999999877 67888876654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.5e-12 Score=120.98 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=89.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe---eEEEecCCCccccccCCchhH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT---KIQLLDLPGIIEGASEGKGRG 130 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~---~i~~~d~~g~~~~~~~~~~~~ 130 (317)
++ +.+..|++++|+|+||||||||+++|+|...+ ..|.+.+.|. ++..+ .. ...
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~-----------~~G~i~~~G~r~~ev~~~-----~~---~~~--- 206 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRA-----------DVIVVGLIGERGREVKDF-----IE---NIL--- 206 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCC-----------SEEEEEEESCCHHHHHHH-----HH---TTT---
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCC-----------CeEEEEEeceecHHHHHH-----HH---hhc---
Confidence 45 77888999999999999999999999999877 7898888764 21100 00 000
Q ss_pred HHHHhhhccCcEEEEEecCCCchhhHHH----H---HHHHHHccc---cccccCCcccccceeeeeeEeeecCC--CCCC
Q 021103 131 RQVIAVSKSSDIVLMVLDASKSEGHRQI----L---TKELEAVGL---RLNKRPPQIYFKKKKTGGISFNSTLP--LTHV 198 (317)
Q Consensus 131 ~~~~~~~~~~d~i~~v~~~~~~~~~~~~----~---~~~L~~~~l---~~~~~~~~LS~g~~qr~~ialilDEP--t~~L 198 (317)
....+ ...+.++.....+...... + .+++...+- .+-.....||+|+ ||+++| +.+| |++|
T Consensus 207 --~~~~l--~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qrvslA--l~~p~~t~gl 279 (438)
T 2dpy_A 207 --GPDGR--ARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-REIALA--IGEPPATKGY 279 (438)
T ss_dssp --HHHHH--HTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HHHHHH--TTCCCCSSSC
T ss_pred --ccccc--CceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HHHHHH--hCCCcccccC
Confidence 00001 1122333321111111111 1 111111111 1223467899999 999998 7777 8999
Q ss_pred CHHHHHHHHHHhc---c---c-C------cEEEecCCCChhhHHHHHh
Q 021103 199 DEKLCYQILHEYK---I---H-N------AEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 199 D~~~~~~~l~~l~---~---~-~------~~i~~shd~~~~~~~~~~~ 233 (317)
|+.....+.+.+. . . + ++++++||.+ +.++|.+.
T Consensus 280 D~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~ 326 (438)
T 2dpy_A 280 PPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSAR 326 (438)
T ss_dssp CTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEE
Confidence 9988666555543 3 2 4 7889999987 67777653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=6e-11 Score=109.91 Aligned_cols=57 Identities=23% Similarity=0.244 Sum_probs=29.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcc-c------cceee--eeeEEEEECCe--eEEEecCCCcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASY-E------FTTLT--CIPGIIHYNDT--KIQLLDLPGII 120 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~-p------~tT~~--~~~G~i~~~g~--~i~~~d~~g~~ 120 (317)
.|+|+|++|+|||||+|+|.+.......+ + ..|.. .....+..+|. .+.++||||+.
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~g 106 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYG 106 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-----
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEecccc
Confidence 57999999999999999998875443322 1 12332 22222334454 57889999984
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-11 Score=109.32 Aligned_cols=120 Identities=16% Similarity=0.044 Sum_probs=73.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
..+|..++|+||||||||||+++|+|...+ . +|.|.+.|.++.+ ..+.. .....|
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-----------~~~G~I~~~g~~i~~------~~~~~--~~~v~q----- 77 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIEY------VFKHK--KSIVNQ----- 77 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHH-----------HCCCEEEEEESSCCS------CCCCS--SSEEEE-----
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCC-----------CCCCEEEEcCCccee------ecCCc--ceeeeH-----
Confidence 456899999999999999999999999876 5 7888876655421 11000 000000
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
..+.. ....-...+...|.. .| =.+++|||+ |++....+++......+++
T Consensus 78 -------~~~gl-~~~~l~~~la~aL~~-------~p------------~illlDEp~---D~~~~~~~l~~~~~g~~vl 127 (261)
T 2eyu_A 78 -------REVGE-DTKSFADALRAALRE-------DP------------DVIFVGEMR---DLETVETALRAAETGHLVF 127 (261)
T ss_dssp -------EEBTT-TBSCHHHHHHHHHHH-------CC------------SEEEESCCC---SHHHHHHHHHHHHTTCEEE
T ss_pred -------HHhCC-CHHHHHHHHHHHHhh-------CC------------CEEEeCCCC---CHHHHHHHHHHHccCCEEE
Confidence 00000 000001111111110 00 027899999 9988877777665445899
Q ss_pred EecCCCChhhHHHHH
Q 021103 218 LFREDATVDDLIDVI 232 (317)
Q Consensus 218 ~~shd~~~~~~~~~~ 232 (317)
+++|+.+....++++
T Consensus 128 ~t~H~~~~~~~~dri 142 (261)
T 2eyu_A 128 GTLHTNTAIDTIHRI 142 (261)
T ss_dssp EEECCSSHHHHHHHH
T ss_pred EEeCcchHHHHHHHH
Confidence 999998887777765
|
| >3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-10 Score=101.79 Aligned_cols=50 Identities=18% Similarity=0.078 Sum_probs=38.2
Q ss_pred eeeeeEEEecccCCChhhHH---HHhc---CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 238 YMKCVYVYNKIDVIGIDDVD---KLAR---QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~---~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
..|+++|.||+|+.....++ .+.. ....+.+||+++.|++++.+.|.+.+
T Consensus 198 ~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 198 KKPIVVVLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp TCCEEEEEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred CCCEEEEEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999997643322 2322 24578899999999999999997764
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.1e-13 Score=129.34 Aligned_cols=145 Identities=10% Similarity=-0.012 Sum_probs=85.8
Q ss_pred CCcEE-EEeCCcEEEEEcCCCCcHHHHHHH--HhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh
Q 021103 53 EGFEV-TKFGHGRVALIGFPSVGKSTLLTL--LTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR 129 (317)
Q Consensus 53 ~~~~~-~~~~g~~valiG~ngaGKSTLln~--L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~ 129 (317)
.++++ .+..|+.++|+|+||||||||+++ ++|...+ .+|.++++|.+.. .-........++
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-----------~~g~i~v~g~~~~-----~~~~~~~~~~g~ 92 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-----------DEPGVFVTFEETP-----QDIIKNARSFGW 92 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-----------CCCEEEEESSSCH-----HHHHHHHGGGTC
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-----------CCCEEEEEEeCCH-----HHHHHHHHHcCC
Confidence 35566 677899999999999999999999 6798876 6788888775410 000001122333
Q ss_pred HHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeEeeecCCCCC-----CCHHH
Q 021103 130 GRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGISFNSTLPLTH-----VDEKL 202 (317)
Q Consensus 130 ~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ialilDEPt~~-----LD~~~ 202 (317)
..|..... ..+.+. +...... ..++|+.+++ ..++.+..||+|+.||+ ++||||+. +|+..
T Consensus 93 ~~q~~~~~---~~l~~~-~~~~~~~----~~~~l~~~~l~~~~~~~~~~LS~g~~~~l----ilDe~t~~~~~~~lD~~~ 160 (525)
T 1tf7_A 93 DLAKLVDE---GKLFIL-DASPDPE----GQEVVGGFDLSALIERINYAIQKYRARRV----SIDSVTSVFQQYDASSVV 160 (525)
T ss_dssp CHHHHHHT---TSEEEE-ECCCCSS----CCSCCSSHHHHHHHHHHHHHHHHHTCSEE----EEECSTTTSTTTCCHHHH
T ss_pred ChHHhhcc---CcEEEE-ecCcccc----hhhhhcccCHHHHHHHHHHHHHHcCCCEE----EECCHHHHHHhcCCHHHH
Confidence 33332211 112111 1111000 0112222333 34556778999999975 56899874 57766
Q ss_pred HH---HHHHHhcccC-cEEEecCCCCh
Q 021103 203 CY---QILHEYKIHN-AEVLFREDATV 225 (317)
Q Consensus 203 ~~---~~l~~l~~~~-~~i~~shd~~~ 225 (317)
.. ++++.++..+ ++|+++|+...
T Consensus 161 ~~~l~~ll~~l~~~g~tvl~itH~~~~ 187 (525)
T 1tf7_A 161 RRELFRLVARLKQIGATTVMTTERIEE 187 (525)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEECSSS
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCCCC
Confidence 44 4555555445 99999999543
|
| >1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.7e-10 Score=111.84 Aligned_cols=82 Identities=18% Similarity=0.188 Sum_probs=50.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccc-cceeeeeeEEEEE------------------CCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYE-FTTLTCIPGIIHY------------------NDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p-~tT~~~~~G~i~~------------------~g~~i~~~d~~g~~~~ 122 (317)
..+++|+|.+|+|||||++.|++.... ...| +.|.+...-.+.+ ....+.++||||....
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~-~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc-cccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 358999999999999999999876421 1222 3333321111111 1124889999996432
Q ss_pred ccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
... ....++.+|.+++++|+..
T Consensus 84 ~~~-------~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTL-------RKRGGALADLAILIVDINE 105 (594)
T ss_dssp TTS-------BCSSSBSCSEEEEEEETTT
T ss_pred HHH-------HHHHHhhCCEEEEEEECCC
Confidence 111 1123467899999999865
|
| >1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=111.31 Aligned_cols=83 Identities=23% Similarity=0.212 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-------------------------CC------ccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-------------------------AA------SYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-------------------------v~------~~p~tT~~~~~G~i~~~g~~i 111 (317)
.+++++|..|+|||||++.|++.... +. ...+.|.+.....+.+++..+
T Consensus 44 ~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~~~~ 123 (467)
T 1r5b_A 44 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRF 123 (467)
T ss_dssp EEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCCeEE
Confidence 57999999999999999999743211 11 134677777666777888999
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+. .......+..+|.+++++|+...
T Consensus 124 ~iiDtPGh~~f-------~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 124 SLLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp EECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred EEEECCCcHHH-------HHHHHhhcccCCEEEEEEeCCcC
Confidence 99999996431 12233445789999999998654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=3.5e-12 Score=117.74 Aligned_cols=46 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+++...+|.+++|+|+||||||||++.|+|...+ ..|.|.+.|.+
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~-----------~~G~V~l~g~D 194 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKN-----------EGTKVLMAAGD 194 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHH-----------TTCCEEEECCC
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccc-----------cCCEEEEeccc
Confidence 45666677999999999999999999999999876 67888776654
|
| >3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B | Back alignment and structure |
|---|
Probab=99.09 E-value=1e-09 Score=113.45 Aligned_cols=83 Identities=19% Similarity=0.171 Sum_probs=54.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC----------------CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS----------------EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~----------------~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 126 (317)
.+|+++|.+|+|||||++.|++... +.....|.|.+...-.+...+..+.++||||..+.
T Consensus 297 lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF---- 372 (1289)
T 3avx_A 297 VNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADY---- 372 (1289)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHH----
T ss_pred eEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHH----
Confidence 4699999999999999999997521 01123566666544444456678999999996431
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCc
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|.+++++|+...
T Consensus 373 ---~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 373 ---VKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp ---HHHHHHTSCCCSEEEEEEETTTC
T ss_pred ---HHHHHHHHhhCCEEEEEEcCCcc
Confidence 22344456789999999998653
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=107.87 Aligned_cols=85 Identities=22% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc------CCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT------HSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~------~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
+..++++|.+|+|||||+|+|+|. ...++++||||++...+. + +..+.++||||+............+...
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~--~-~~~~~liDtPG~~~~~~~~~~l~~~~l~ 238 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIP--L-ESGATLYDTPGIINHHQMAHFVDARDLK 238 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEE--C-STTCEEEECCSCCCCSSGGGGSCTTTHH
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEE--e-CCCeEEEeCCCcCcHHHHHHHHhHHHHH
Confidence 457999999999999999999997 345899999999987543 3 3347899999997543211111112222
Q ss_pred hh---ccCcEEEEEecC
Q 021103 136 VS---KSSDIVLMVLDA 149 (317)
Q Consensus 136 ~~---~~~d~i~~v~~~ 149 (317)
.+ ...+.+.++++.
T Consensus 239 ~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 239 IITPKREIHPRVYQLNE 255 (369)
T ss_dssp HHSCSSCCCCEEEEECT
T ss_pred HHhcccccCceEEEEcC
Confidence 22 446666676654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-11 Score=108.25 Aligned_cols=33 Identities=27% Similarity=0.175 Sum_probs=30.1
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++++.+.+|++++|+||||||||||+++|+|..
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 456778889999999999999999999999985
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.03 E-value=9.9e-11 Score=98.59 Aligned_cols=26 Identities=35% Similarity=0.429 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
|++++|+|+||||||||+++|+|...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 56899999999999999999999874
|
| >3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.9e-09 Score=102.09 Aligned_cols=99 Identities=25% Similarity=0.299 Sum_probs=66.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCC-------------CCCc------cccceeeeeeEEEEECCeeEEEecCCCcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHS-------------EAAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGII 120 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~-------------~v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~ 120 (317)
..+||||..++|||||.-+|+ |... .+.+ .-|.|.....-.+.|+|..+.++||||..
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGHv 111 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGHQ 111 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCGG
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCcH
Confidence 379999999999999999885 2210 1122 23566666677889999999999999986
Q ss_pred ccccCCchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHccc
Q 021103 121 EGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (317)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~l 168 (317)
+.. ......++.+|..++++|+.... .+...+.+.+...++
T Consensus 112 DF~-------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~l 153 (548)
T 3vqt_A 112 DFS-------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRAT 153 (548)
T ss_dssp GCS-------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTC
T ss_pred HHH-------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCC
Confidence 532 35566778899999999987543 234445555554443
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.9e-11 Score=102.32 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|.++||+|+||||||||+++|+|...
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999999864
|
| >2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H | Back alignment and structure |
|---|
Probab=99.01 E-value=5.4e-09 Score=104.76 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=59.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc---CCC---------CCc------cccceeeeeeEEEEECC-------eeEEEecC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT---HSE---------AAS------YEFTTLTCIPGIIHYND-------TKIQLLDL 116 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~---~~~---------v~~------~p~tT~~~~~G~i~~~g-------~~i~~~d~ 116 (317)
-.+++|+|..|+|||||++.|+.. ... +.+ ..+.|.......+.+++ ..+.++||
T Consensus 10 ~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDT 89 (704)
T 2rdo_7 10 YRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDT 89 (704)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeC
Confidence 357999999999999999999532 211 111 24566666666777777 88999999
Q ss_pred CCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
||..+. .......++.+|.+++++|+...
T Consensus 90 PG~~df-------~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 90 PGHVDF-------TIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred CCccch-------HHHHHHHHHHCCEEEEEEeCCCC
Confidence 997531 12334456789999999998654
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.5e-09 Score=92.55 Aligned_cols=78 Identities=19% Similarity=0.331 Sum_probs=50.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCC---CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHH-hhh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEA---ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVI-AVS 137 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v---~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~-~~~ 137 (317)
..+++|+|++|+|||||++.|++..... +..|.++.+. .+..+.++||||..... ....... ...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~----~~~~~~~~~~~ 80 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------DGSGVTLVDFPGHVKLR----YKLSDYLKTRA 80 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG-------GGSSCEEEECCCCGGGT----HHHHHHHHHHG
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe-------eCceEEEEECCCcHHHH----HHHHHHHHhcc
Confidence 4589999999999999999999876431 2223333222 45678899999974321 1111111 112
Q ss_pred ccCcEEEEEecCC
Q 021103 138 KSSDIVLMVLDAS 150 (317)
Q Consensus 138 ~~~d~i~~v~~~~ 150 (317)
..++.+++++|..
T Consensus 81 ~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 81 KFVKGLIFMVDST 93 (218)
T ss_dssp GGEEEEEEEEETT
T ss_pred ccCCEEEEEEECC
Confidence 3378899999876
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.8e-10 Score=98.60 Aligned_cols=52 Identities=6% Similarity=0.116 Sum_probs=37.9
Q ss_pred eeeeeEEEecccCCCh-----hhHH-HHhc---CCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGI-----DDVD-KLAR---QPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~-----~~~~-~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
..|.++|+||+|+... +... .+.. ...++++||++|.|++++.+.|.+.+..
T Consensus 154 ~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 154 RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence 3689999999998642 1221 2221 2457889999999999999999887643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=103.03 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=29.6
Q ss_pred CCcEEEEeCCcE--EEEEcCCCCcHHHHHHHHhccC
Q 021103 53 EGFEVTKFGHGR--VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 53 ~~~~~~~~~g~~--valiG~ngaGKSTLln~L~g~~ 86 (317)
.++++.+..|.. +||+|+||||||||+|+|+|..
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 356777788999 9999999999999999999985
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.8e-10 Score=103.49 Aligned_cols=58 Identities=29% Similarity=0.378 Sum_probs=43.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC-------CCCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH-------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~-------~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+..++++|.+|+|||||+|+|+|.. ..++++||||++...+. +. ..+.++||||+...
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~--~~-~~~~liDtPG~~~~ 224 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP--LD-EESSLYDTPGIINH 224 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE--SS-SSCEEEECCCBCCT
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE--ec-CCeEEEeCCCcCcH
Confidence 4579999999999999999999872 23789999999987643 32 23789999999754
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.9e-10 Score=111.80 Aligned_cols=121 Identities=12% Similarity=0.084 Sum_probs=77.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
.+..|..++|+|+||||||||+++++|...+ . |. .+.++..- .. . .+.....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~-----------~-G~------~vi~~~~e----e~---~---~~l~~~~ 328 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENACA-----------N-KE------RAILFAYE----ES---R---AQLLRNA 328 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHT-----------T-TC------CEEEEESS----SC---H---HHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh-----------C-CC------CEEEEEEe----CC---H---HHHHHHH
Confidence 4567899999999999999999999998755 1 21 11111110 00 0 1111111
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCCHH-----
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVDEK----- 201 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD~~----- 201 (317)
... ... +.+ +..+++ ..+..+..||+|++||+.++ +++| ||++||..
T Consensus 329 ~~~--------g~~-------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~ 391 (525)
T 1tf7_A 329 YSW--------GMD-------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNA 391 (525)
T ss_dssp HTT--------SCC-------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHH
T ss_pred HHc--------CCC-------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHH
Confidence 100 000 111 223444 45677889999999999887 8999 99999987
Q ss_pred HH---HHHHHHhcccC-cEEEecCCC
Q 021103 202 LC---YQILHEYKIHN-AEVLFREDA 223 (317)
Q Consensus 202 ~~---~~~l~~l~~~~-~~i~~shd~ 223 (317)
.. ..+++.++..+ ++++++|+.
T Consensus 392 ~~~~i~~ll~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 392 FRQFVIGVTGYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECS
T ss_pred HHHHHHHHHHHHHhCCCEEEEEECcc
Confidence 53 44555555555 899999996
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.5e-10 Score=98.27 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=76.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+..|.++||+||||||||||+++|+|....+. .+. ....+.+++...++.... ..+
T Consensus 16 ~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~------~~~-------~~~~i~~v~~d~~~~~l~-----~~~ 77 (245)
T 2jeo_A 16 ENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNE------VEQ-------RQRKVVILSQDRFYKVLT-----AEQ 77 (245)
T ss_dssp -------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGG------SCG-------GGCSEEEEEGGGGBCCCC-----HHH
T ss_pred cceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhc------ccc-------cCCceEEEeCCcCccccC-----HhH
Confidence 56788888899999999999999999999999753210 000 011222333222221100 011
Q ss_pred HHhhhccCcEEEEEecCCCc-hhhHHHHHHHHHHccccccccCCcccccceeeeeeE--------eeecCCCCCCCHHHH
Q 021103 133 VIAVSKSSDIVLMVLDASKS-EGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGIS--------FNSTLPLTHVDEKLC 203 (317)
Q Consensus 133 ~~~~~~~~d~i~~v~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ia--------lilDEPt~~LD~~~~ 203 (317)
........ +.. ..+ ..+...+.+.|+.+.-....+++.||+|++||+.+. +++|||....+...
T Consensus 78 ~~~~~~~~----~~~--~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l- 150 (245)
T 2jeo_A 78 KAKALKGQ----YNF--DHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEI- 150 (245)
T ss_dssp HHHHHTTC----CCT--TSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHH-
T ss_pred hhhhhccC----CCC--CCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHH-
Confidence 11110000 000 111 112334445555432245567889999999998652 88999987777541
Q ss_pred HHHHHHhcccCcEEEecCC-CChhhHH
Q 021103 204 YQILHEYKIHNAEVLFRED-ATVDDLI 229 (317)
Q Consensus 204 ~~~l~~l~~~~~~i~~shd-~~~~~~~ 229 (317)
..+ ...++++++|+ ..+.+.+
T Consensus 151 ----~~~-~~~~i~v~th~~~~~~r~~ 172 (245)
T 2jeo_A 151 ----RDM-FHLRLFVDTDSDVRLSRRV 172 (245)
T ss_dssp ----HTT-CSEEEEEECCHHHHHHHHH
T ss_pred ----HHh-cCeEEEEECCHHHHHHHHH
Confidence 111 12378899997 4444433
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-10 Score=93.50 Aligned_cols=59 Identities=12% Similarity=0.120 Sum_probs=45.6
Q ss_pred ccccCCcccccceeeeeeE---------------eeecCCCCCCCHHHHHHHHHHhc---cc-CcEEEecCCCChhhH
Q 021103 170 LNKRPPQIYFKKKKTGGIS---------------FNSTLPLTHVDEKLCYQILHEYK---IH-NAEVLFREDATVDDL 228 (317)
Q Consensus 170 ~~~~~~~LS~g~~qr~~ia---------------lilDEPt~~LD~~~~~~~l~~l~---~~-~~~i~~shd~~~~~~ 228 (317)
.++++..|||||+||+++| +++||||++||+.....+.+.+. .. .++|++||+..+.+.
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~ 128 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDA 128 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGG
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHh
Confidence 4567899999999999651 89999999999998665555443 33 489999999755443
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-11 Score=121.84 Aligned_cols=41 Identities=5% Similarity=-0.108 Sum_probs=31.1
Q ss_pred eeecCC---CCCCCHHHH-HHHHHHhcccC-cEEEecCCCChhhHH
Q 021103 189 FNSTLP---LTHVDEKLC-YQILHEYKIHN-AEVLFREDATVDDLI 229 (317)
Q Consensus 189 lilDEP---t~~LD~~~~-~~~l~~l~~~~-~~i~~shd~~~~~~~ 229 (317)
+++||| |++||.... ..+++.+...+ +++++||+.++.+++
T Consensus 659 lLLDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 659 VLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTALG 704 (765)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTCC
T ss_pred EEEECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 899999 999998764 56766665444 899999997665543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=4.4e-11 Score=107.57 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=31.0
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++.+..|+.++|+|+||||||||++.|+|...+
T Consensus 27 ~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 27 DKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp HHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 45566778999999999999999999999998765
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.5e-10 Score=119.91 Aligned_cols=39 Identities=3% Similarity=-0.145 Sum_probs=30.2
Q ss_pred eeecCCCCCCCHHH----HHHHHHHhccc-C-cEEEecCCCChhh
Q 021103 189 FNSTLPLTHVDEKL----CYQILHEYKIH-N-AEVLFREDATVDD 227 (317)
Q Consensus 189 lilDEPt~~LD~~~----~~~~l~~l~~~-~-~~i~~shd~~~~~ 227 (317)
+++|||++|+|+.. ...+++.+... + ++|++||+.++..
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~ 916 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVE 916 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 89999999999765 45667777643 4 8999999966544
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=97.21 Aligned_cols=51 Identities=12% Similarity=-0.151 Sum_probs=42.4
Q ss_pred ccCC-cccccceeeeeeE------------------eeecCCCCCCCHHHHHHHHHHhccc-CcEEEecCC
Q 021103 172 KRPP-QIYFKKKKTGGIS------------------FNSTLPLTHVDEKLCYQILHEYKIH-NAEVLFRED 222 (317)
Q Consensus 172 ~~~~-~LS~g~~qr~~ia------------------lilDEPt~~LD~~~~~~~l~~l~~~-~~~i~~shd 222 (317)
+++. .||+||+||+.+| +++||||++||+.....+++.+... .++|++||.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~ 330 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL 330 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec
Confidence 3455 7999999999887 8999999999999988887777543 488899995
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=93.95 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=26.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|+.++|+||||||||||+++|+|...+
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999999996543
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-10 Score=115.79 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=29.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++++. .+|..++|+||||+||||||++|+|..
T Consensus 599 ndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 599 NPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 456676 678999999999999999999999874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.87 E-value=9.8e-11 Score=107.79 Aligned_cols=93 Identities=18% Similarity=0.095 Sum_probs=57.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEEC-Ce---------------eEEEecCCCccccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYN-DT---------------KIQLLDLPGIIEGA 123 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~-g~---------------~i~~~d~~g~~~~~ 123 (317)
.|.+++|+|+||||||||+|+|+|... + ..|.|.+. |. ...++|+||+...
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~-----------~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~- 281 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEI-----------LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF- 281 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCC-----------CCC-------------CCCEEEECTTSCEEEECHHHHTC-
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccccc-----------ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh-
Confidence 578999999999999999999999987 6 33444332 21 1123344333210
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia 188 (317)
.+...........+.++++.+++ ..+..+..+| |++||++++
T Consensus 282 ----------------------~l~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 282 ----------------------GLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp ----------------------CCCCCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHH
T ss_pred ----------------------hhcCCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHH
Confidence 00011111222345566777777 5778889999 999999886
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=93.70 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=26.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+.|..++|+||||||||||+++|+|..+|
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence 45899999999999999999999999863
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-08 Score=87.51 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=37.9
Q ss_pred eeeeeEEEecccCCChhhHH---H-----------H------------------hc---CCCeEEEeccccccHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDVD---K-----------L------------------AR---QPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~---~-----------l------------------~~---~~~~v~iSa~~~~~i~~l~~~ 282 (317)
..|.++|+||+|+......+ . + .. ...++++||+++.|+++|.+.
T Consensus 171 ~~p~~iv~NK~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~ 250 (262)
T 1yrb_A 171 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 250 (262)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCeEEEEecccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHH
Confidence 46899999999998653211 0 0 11 126899999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.+.
T Consensus 251 i~~~~~ 256 (262)
T 1yrb_A 251 AYEHYC 256 (262)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 988763
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-09 Score=97.30 Aligned_cols=138 Identities=9% Similarity=-0.045 Sum_probs=74.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSK 138 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~ 138 (317)
+..|..++|+|+||||||||++.+++....-..+.+ ..+. .+..+.+++.- ............+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g--~~~~------~~~~v~~~~~e-------~~~~~~~~r~~~~g 91 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLE--VGEL------PTGPVIYLPAE-------DPPTAIHHRLHALG 91 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTC--CCCC------CCCCEEEEESS-------SCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCC--CccC------CCccEEEEECC-------CCHHHHHHHHHHHH
Confidence 346899999999999999999999985432000000 0000 01122222211 00000000000000
Q ss_pred cCcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE------eeecCCCC--CCCHH---HHHH
Q 021103 139 SSDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS------FNSTLPLT--HVDEK---LCYQ 205 (317)
Q Consensus 139 ~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia------lilDEPt~--~LD~~---~~~~ 205 (317)
. + ........+++.+.+ ..+..+..||+|+.+++.-. +++|||++ ++|+. .+..
T Consensus 92 -~-------~-----~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~~~~~livlDe~~~~~~~d~~~~~~~~~ 158 (279)
T 1nlf_A 92 -A-------H-----LSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQ 158 (279)
T ss_dssp -T-------T-----SCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTTCHHHHHH
T ss_pred -h-------h-----cChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhcCCCCEEEECCHHHhcCCCcCchHHHHH
Confidence 0 0 011223445666666 45667889999998876421 89999999 88862 2233
Q ss_pred H---HHHhc-ccC-cEEEecCCCC
Q 021103 206 I---LHEYK-IHN-AEVLFREDAT 224 (317)
Q Consensus 206 ~---l~~l~-~~~-~~i~~shd~~ 224 (317)
+ |..+. ..+ ++|+++|+..
T Consensus 159 ~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 159 VIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHcCCEEEEEecCCC
Confidence 3 44442 334 8999999854
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.2e-10 Score=93.17 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee---eEEEEECCeeEEEec
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI---PGIIHYNDTKIQLLD 115 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~---~G~i~~~g~~i~~~d 115 (317)
..++|+|++|||||||+++|+|...+ . .|.|.++|.++.-+|
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~-----------~g~~~G~I~~dg~~i~~~~ 47 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE-----------RGLRVAVVKRHAHGDFEID 47 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH-----------TTCCEEEEEC---------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh-----------cCCceEEEEEcCcccccCC
Confidence 47999999999999999999999876 4 799999988754443
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-09 Score=95.23 Aligned_cols=58 Identities=31% Similarity=0.424 Sum_probs=38.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+.+++++|.||+|||||+|+|+|... .+++.||||++.. .+.+ +..+.++||||+...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 178 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQ--WVKV-GKELELLDTPGILWP 178 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------C--CEEE-TTTEEEEECCCCCCS
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeE--EEEe-CCCEEEEECcCcCCC
Confidence 45899999999999999999999874 5999999999885 3444 557889999999754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.8e-10 Score=92.20 Aligned_cols=45 Identities=18% Similarity=0.055 Sum_probs=36.8
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+++.+.+|+.++|+||||||||||+++|+|.. | .+|.|.++|.++
T Consensus 26 vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-----------~~G~V~~~g~~i 70 (158)
T 1htw_A 26 LKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G-----------HQGNVKSPTYTL 70 (158)
T ss_dssp HHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T-----------CCSCCCCCTTTC
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C-----------CCCeEEECCEee
Confidence 34455568999999999999999999999998 7 667777766554
|
| >1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-08 Score=102.95 Aligned_cols=83 Identities=24% Similarity=0.250 Sum_probs=58.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CC---------------ccccceeeeeeEEEEEC----------------Cee
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AA---------------SYEFTTLTCIPGIIHYN----------------DTK 110 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~---------------~~p~tT~~~~~G~i~~~----------------g~~ 110 (317)
.+++|+|.+|+|||||++.|++.... .+ ..++.|.......+.|. +..
T Consensus 20 rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 99 (842)
T 1n0u_A 20 RNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFL 99 (842)
T ss_dssp EEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCce
Confidence 37999999999999999999865211 11 12345655555666664 577
Q ss_pred EEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 111 IQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 111 i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
+.++||||..+.. ......++.+|.+++++|+...
T Consensus 100 i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 100 INLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp EEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 8999999975421 2344556789999999998654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-09 Score=98.71 Aligned_cols=42 Identities=10% Similarity=-0.120 Sum_probs=32.5
Q ss_pred eeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 233 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~ 233 (317)
+++|||+ |.+....+++....+.++++++|+.+..+.++++.
T Consensus 200 illDEp~---d~e~~~~~~~~~~~G~~vl~t~H~~~~~~~~dRli 241 (356)
T 3jvv_A 200 ILVGEMR---DLETIRLALTAAETGHLVFGTLHTTSAAKTIDRVV 241 (356)
T ss_dssp EEESCCC---SHHHHHHHHHHHHTTCEEEEEESCSSHHHHHHHHH
T ss_pred EecCCCC---CHHHHHHHHHHHhcCCEEEEEEccChHHHHHHHHh
Confidence 7899999 77776666666555558999999988778777754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-09 Score=100.26 Aligned_cols=121 Identities=16% Similarity=0.036 Sum_probs=70.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee-eEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI-PGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~-~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
..+|..++|+||||||||||+++|+|...+ . +|.|.+.+.++. +. .....+++.|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~-----------~~~g~I~~~e~~~e------~~--~~~~~~~v~Q~---- 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQ-----------TKSYHIITIEDPIE------YV--FKHKKSIVNQR---- 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHH-----------HSCCEEEEEESSCC------SC--CCCSSSEEEEE----
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCc-----------CCCcEEEEecccHh------hh--hccCceEEEee----
Confidence 356889999999999999999999999866 5 677755332221 10 00011111110
Q ss_pred ccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 138 KSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 138 ~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
.+.. ....-...+...|. . .| =.+++|||+ |++.+..+++......+++
T Consensus 190 --------~~g~-~~~~~~~~l~~~L~-----~--~p------------d~illdE~~---d~e~~~~~l~~~~~g~~vi 238 (372)
T 2ewv_A 190 --------EVGE-DTKSFADALRAALR-----E--DP------------DVIFVGEMR---DLETVETALRAAETGHLVF 238 (372)
T ss_dssp --------EBTT-TBSCSHHHHHHHTT-----S--CC------------SEEEESCCC---SHHHHHHHHHHHTTTCEEE
T ss_pred --------ecCC-CHHHHHHHHHHHhh-----h--Cc------------CEEEECCCC---CHHHHHHHHHHHhcCCEEE
Confidence 0000 00000111111110 0 00 137899999 7887777777765445888
Q ss_pred EecCCCChhhHHHHHh
Q 021103 218 LFREDATVDDLIDVIE 233 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~ 233 (317)
.++|+.+..+.++++.
T Consensus 239 ~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 239 GTLHTNTAIDTIHRIV 254 (372)
T ss_dssp ECCCCCSHHHHHHHHH
T ss_pred EEECcchHHHHHHHHH
Confidence 9999988888887763
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.5e-08 Score=99.06 Aligned_cols=60 Identities=28% Similarity=0.331 Sum_probs=51.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-------CCeeEEEecCCCccccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-------NDTKIQLLDLPGIIEGA 123 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-------~g~~i~~~d~~g~~~~~ 123 (317)
.+|+|+|+||+|||||+|.|+|....+ ++++||++.+.|.+.| .+..+.++||||+....
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~~~~-~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~ 105 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKKKGF-SLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVE 105 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCS-CCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGG
T ss_pred cEEEEECCCCCCHHHHHHhHcCCCCcc-ccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCccc
Confidence 579999999999999999999987544 7899999999998765 56789999999997643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=9.3e-11 Score=108.77 Aligned_cols=34 Identities=26% Similarity=0.265 Sum_probs=30.3
Q ss_pred cEEEEeC--CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 55 FEVTKFG--HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 55 ~~~~~~~--g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+++.+.. +++++|+|+||||||||+++|+|...+
T Consensus 161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5556667 899999999999999999999999877
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-09 Score=111.02 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=55.7
Q ss_pred HHHHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEec
Q 021103 159 LTKELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFR 220 (317)
Q Consensus 159 ~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~s 220 (317)
..+.|..+|+ .+++++.+|||||+||+.|| +++||||++||+.....+++ .+... .|+|+++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3456778888 36889999999999999988 89999999999987655544 44443 4999999
Q ss_pred CCCChhhHHH
Q 021103 221 EDATVDDLID 230 (317)
Q Consensus 221 hd~~~~~~~~ 230 (317)
||.++...+|
T Consensus 524 Hd~~~~~~aD 533 (916)
T 3pih_A 524 HDEEVIRNAD 533 (916)
T ss_dssp CCHHHHHTCS
T ss_pred CCHHHHHhCC
Confidence 9965444343
|
| >3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.2e-08 Score=101.33 Aligned_cols=97 Identities=21% Similarity=0.309 Sum_probs=67.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCC---------Ccc------ccceeeeeeEEEEECCeeEEEecCCCccccccC
Q 021103 64 RVALIGFPSVGKSTLLTLLT---GTHSEA---------ASY------EFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~---g~~~~v---------~~~------p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 125 (317)
.|||+|..++|||||.-+|. |..... .++ -|.|.....-.+.|++..+.++||||..+.
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF--- 80 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF--- 80 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST---
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH---
Confidence 58999999999999998884 544321 111 155666666677889999999999997653
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHcc
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVG 167 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~ 167 (317)
..+....++.+|..++++|+.... .+...+.+.+...+
T Consensus 81 ----~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~ 119 (638)
T 3j25_A 81 ----LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMG 119 (638)
T ss_dssp ----HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC
Confidence 235566778899999999986542 23344444444444
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-09 Score=97.06 Aligned_cols=109 Identities=14% Similarity=0.118 Sum_probs=57.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE---CCee-------------EEEecCCCccc
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY---NDTK-------------IQLLDLPGIIE 121 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~---~g~~-------------i~~~d~~g~~~ 121 (317)
....|+.++|+|+||||||||+|+|+|...| ..|.+.+ +|.. -.++|+||+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~-----------~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~ 233 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKL-----------RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN 233 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCC-----------C-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccc-----------cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCc
Confidence 3445889999999999999999999999887 4444444 3322 13557777643
Q ss_pred cccCCchhHHHHHhhhccC--cEEEEEecCCCchhhHHHHHHHHHHccc---cccccCCcccc
Q 021103 122 GASEGKGRGRQVIAVSKSS--DIVLMVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYF 179 (317)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~--d~i~~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~ 179 (317)
....... .......+++. +.+.+. ......+...++.++|+.+++ ..+.++..||.
T Consensus 234 ~~~~~~~-~~~~~~l~~~~~~~n~~~~-~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 234 LEINDIE-PEELKHYFKEFGDKQCFFS-DCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CCCCSSC-HHHHGGGSTTSSSCCCSST-TCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cCCCcCC-HHHHHHHHHhcccccCcCC-CCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 2111000 01112222222 222221 111112223467888999988 45666777775
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.74 E-value=7.8e-10 Score=99.92 Aligned_cols=123 Identities=16% Similarity=0.073 Sum_probs=62.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCcccc-------ceeeeeeEEEEECCeeEEEecCCCcccccc-CCchhH
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEF-------TTLTCIPGIIHYNDTKIQLLDLPGIIEGAS-EGKGRG 130 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~-------tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~-~~~~~~ 130 (317)
..|..++|+|+||||||||+|+|+ ...+ .+.... ||+.+. .+...+ --.++|+||+..... .....
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~~~-~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPFGK-GSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEETT-TEEEESSCCCSSCCGGGTSCG-
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEcCC-CcEEEECcCcCcCcccccCCH-
Confidence 357899999999999999999999 7765 344433 333321 222211 124568888752111 00000
Q ss_pred HHHHhhhccCcEEE-EEecCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeee
Q 021103 131 RQVIAVSKSSDIVL-MVLDASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGI 187 (317)
Q Consensus 131 ~~~~~~~~~~d~i~-~v~~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~i 187 (317)
.+....+.....+. ...+.....+....+.++|+.+++ ..+.++..||+.+++++.+
T Consensus 238 e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~ 298 (302)
T 2yv5_A 238 REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKEL 298 (302)
T ss_dssp GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11100111000000 000101111223467888999998 4567788888755444444
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-09 Score=109.41 Aligned_cols=71 Identities=14% Similarity=0.131 Sum_probs=55.3
Q ss_pred HHHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHH---HHHhccc-CcEEEecCC
Q 021103 161 KELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQI---LHEYKIH-NAEVLFRED 222 (317)
Q Consensus 161 ~~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~---l~~l~~~-~~~i~~shd 222 (317)
+.|..+|+ .+++.+.+|||||+||+.|| +++||||++||+.....+ ++.+... +|+|+++||
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 565 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 565 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 34778888 36889999999999999988 899999999998875555 4555544 499999999
Q ss_pred CChhhHHHH
Q 021103 223 ATVDDLIDV 231 (317)
Q Consensus 223 ~~~~~~~~~ 231 (317)
.+..+.+|+
T Consensus 566 l~~i~~ADr 574 (972)
T 2r6f_A 566 EDTMLAADY 574 (972)
T ss_dssp HHHHHSCSE
T ss_pred HHHHHhCCE
Confidence 654444444
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.2e-08 Score=85.76 Aligned_cols=50 Identities=20% Similarity=0.284 Sum_probs=36.8
Q ss_pred eeeeEEEecccCCCh-----hhHHH-Hhc---CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGI-----DDVDK-LAR---QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~-----~~~~~-l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|.++|+||+|+... +.... +.. ...++.+||++|.|++++.+.|.+.+.
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 688999999998643 12221 221 345788999999999999999987653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-08 Score=92.44 Aligned_cols=29 Identities=17% Similarity=0.041 Sum_probs=26.4
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..|..++|+|+||||||||++.|++..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45569999999999999999999999986
|
| >3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=85.13 Aligned_cols=84 Identities=18% Similarity=0.207 Sum_probs=52.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC-CccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA-ASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v-~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
++.|+|.+|+|||||++.+.+...+. ....+.|.......+. ....++++||+|--+-.... + .....++.++.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~--l--~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPS--Y--DSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCS--H--HHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchh--h--hhhhhccCCCE
Confidence 47899999999999999887654431 1123345544443331 23568899999853211000 0 11234678999
Q ss_pred EEEEecCCCc
Q 021103 143 VLMVLDASKS 152 (317)
Q Consensus 143 i~~v~~~~~~ 152 (317)
++++.|....
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999987654
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=5.2e-09 Score=106.07 Aligned_cols=70 Identities=17% Similarity=0.152 Sum_probs=55.0
Q ss_pred HHHHccc---cccccCCcccccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---Hhccc-CcEEEecCCC
Q 021103 162 ELEAVGL---RLNKRPPQIYFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIH-NAEVLFREDA 223 (317)
Q Consensus 162 ~L~~~~l---~~~~~~~~LS~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~-~~~i~~shd~ 223 (317)
.|..+|+ .+++++.+|||||+||+.|| +++||||++||+..+..+++ .+... +++|+++||.
T Consensus 362 ~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 362 VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 5777888 36899999999999999987 89999999999887655544 55544 4999999997
Q ss_pred ChhhHHHH
Q 021103 224 TVDDLIDV 231 (317)
Q Consensus 224 ~~~~~~~~ 231 (317)
++-+.+|+
T Consensus 442 ~~l~~aD~ 449 (842)
T 2vf7_A 442 DVIRRADW 449 (842)
T ss_dssp HHHTTCSE
T ss_pred HHHHhCCE
Confidence 55444444
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=98.61 E-value=3.5e-08 Score=94.81 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~ 83 (317)
..+|+|+|++||||||+++.|+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999999
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.60 E-value=1.3e-08 Score=92.58 Aligned_cols=46 Identities=26% Similarity=0.390 Sum_probs=32.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+.++|+|+||||||||+|.|+|.... +--.-..+..|.+.++|..+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~---~~~aVi~~d~G~i~idg~~l 50 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHG---YKIAVIENEFGEVSVDDQLI 50 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCC---CCEEEECSSCCSCCEEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCC---CcEEEEEecCcccCccHHHH
Confidence 47999999999999999999998610 00011122678777777654
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=4e-08 Score=92.44 Aligned_cols=41 Identities=24% Similarity=0.127 Sum_probs=33.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.++..++|+||||||||||+++|+|...+ ..|.|.+.+.++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~-----------~~g~I~~~ed~i 205 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS-----------SERNILTVEDPI 205 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC-----------TTSCEEEEESSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC-----------CCCEEEEecccc
Confidence 35789999999999999999999999876 567666655443
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.9e-08 Score=82.72 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|..++|+|+||||||||++.|++...+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~ 49 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLR 49 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 345889999999999999999999987654
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-09 Score=85.04 Aligned_cols=57 Identities=9% Similarity=-0.003 Sum_probs=44.2
Q ss_pred cccCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHh---cccCcEEEecCCCChhh
Q 021103 171 NKRPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEY---KIHNAEVLFREDATVDD 227 (317)
Q Consensus 171 ~~~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l---~~~~~~i~~shd~~~~~ 227 (317)
.+++..|||||+||+++| +++||||++||+.....+.+.+ ....++|++||+.....
T Consensus 59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~ 131 (173)
T 3kta_B 59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMA 131 (173)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHT
T ss_pred ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHH
Confidence 345678999999999877 7899999999998866655544 34458999999854443
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.6e-08 Score=87.13 Aligned_cols=57 Identities=28% Similarity=0.485 Sum_probs=39.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
.+++++|.||+|||||+|.|+|... .+++.||+|+... .+.+ +..+.++||||+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~--~~~~-~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQ--WFSL-ENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSC--EEEC-TTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceE--EEEe-CCCEEEEECCCcccC
Confidence 4899999999999999999999876 4889999998864 3333 457889999998754
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-08 Score=84.72 Aligned_cols=55 Identities=18% Similarity=0.216 Sum_probs=45.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDL 116 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~ 116 (317)
..|..++|+||||||||||+++|++..+ .....+.||+.|..|. ++|.+..+++.
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~ 73 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFIST 73 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCH
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccH
Confidence 3588999999999999999999999875 2466789999999987 67777766653
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.54 E-value=1.3e-08 Score=88.92 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh---ccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLT---GTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~---g~~~~ 88 (317)
+.+++|+|+||||||||+++|+ |...+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 5799999999999999999999 88765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-08 Score=97.51 Aligned_cols=47 Identities=15% Similarity=-0.006 Sum_probs=40.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
.++++.+.. ++++|+||||||||||+++|+|...| .+|.|.++|.++
T Consensus 21 ~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p-----------~~G~I~~~g~~~ 67 (483)
T 3euj_A 21 FARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIP-----------DLTLLNFRNTTE 67 (483)
T ss_dssp EEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCC-----------CTTTCCCCCTTS
T ss_pred cceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCC-----------CCCEEEECCEEc
Confidence 477888888 99999999999999999999999887 677777776554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.4e-08 Score=87.86 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=27.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHh-ccCCC-CCccccceeeeeeE
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLT-GTHSE-AASYEFTTLTCIPG 102 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~-g~~~~-v~~~p~tT~~~~~G 102 (317)
.++|+.+..|..++|+||||||||||+++|+ |..++ ......+|+.+..|
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g 69 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKG 69 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTT
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcc
Confidence 4566677779999999999999999999999 98754 22233444444444
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.6e-08 Score=84.22 Aligned_cols=51 Identities=35% Similarity=0.335 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQL 113 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~ 113 (317)
+|..++|+||||||||||+++|+|.... -.+...||+.|..|. ++|.++.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~ 55 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYF 55 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEE
Confidence 4678999999999999999999998642 123345677777775 34544433
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.44 E-value=3.9e-07 Score=83.42 Aligned_cols=130 Identities=9% Similarity=0.007 Sum_probs=59.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-cCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTG-THSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g-~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+.|.||||+|||||+++|++ ...+ ..|.+.++|..+... .+. . .....+...+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~-----------~~g~i~~~~~~~~~~--~~~----~-------~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGP-----------GVYRLKIDVRQFVTA--SNR----K-------LELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCT-----------TCCC-------------------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCC-----------CCCeEEecceeeccc--ccc----c-------ceeeeecccce
Confidence 389999999999999999999 5555 567777766543210 000 0 00011111222
Q ss_pred EEEEecCCCc-hhhHHHHHHHHHHccc--cccccCCcccc-cceeeeeeEeeecCCCCCCCHHHHHHHHHHhcc---cCc
Q 021103 143 VLMVLDASKS-EGHRQILTKELEAVGL--RLNKRPPQIYF-KKKKTGGISFNSTLPLTHVDEKLCYQILHEYKI---HNA 215 (317)
Q Consensus 143 i~~v~~~~~~-~~~~~~~~~~L~~~~l--~~~~~~~~LS~-g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~---~~~ 215 (317)
+.+ ..... ......+++.++.+.- ...... .||+ ..+ .-.+++|||++ ||......+++.+.. ..+
T Consensus 94 ~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~ls~l~~~---~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~ 166 (354)
T 1sxj_E 94 LEI--TPSDMGNNDRIVIQELLKEVAQMEQVDFQD-SKDGLAHR---YKCVIINEANS-LTKDAQAALRRTMEKYSKNIR 166 (354)
T ss_dssp EEE--CCC----CCHHHHHHHHHHHTTTTC-------------C---CEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEE
T ss_pred EEe--cHhhcCCcchHHHHHHHHHHHHhccccccc-cccccCCC---CeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCE
Confidence 211 11110 0011123333333221 111111 3344 111 11388999999 999887777666653 237
Q ss_pred EEEecCCCC
Q 021103 216 EVLFREDAT 224 (317)
Q Consensus 216 ~i~~shd~~ 224 (317)
+|++||+..
T Consensus 167 ~Il~t~~~~ 175 (354)
T 1sxj_E 167 LIMVCDSMS 175 (354)
T ss_dssp EEEEESCSC
T ss_pred EEEEeCCHH
Confidence 899999843
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-08 Score=87.95 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=34.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCccc-------cceeeeeeEEEEECCeeEEEecCCCccc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE-AASYE-------FTTLTCIPGIIHYNDTKIQLLDLPGIIE 121 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p-------~tT~~~~~G~i~~~g~~i~~~d~~g~~~ 121 (317)
...|++++|+|+||||||||+|+|+|...+ ++..+ .||+... .+... ...++|+||+..
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~~--~g~v~dtpg~~~ 236 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTS--GGLVADTPGFSS 236 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEET--TEEEESSCSCSS
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--HhhcC--CEEEecCCCccc
Confidence 345889999999999999999999998866 34333 2444321 22222 124679999864
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-08 Score=80.13 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQL 113 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~ 113 (317)
.|..++|+||||||||||+++|++...+ ......||+.|..|. ++|.++.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge--~~g~~~~~ 56 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE--ENGKNYYF 56 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---C--CBTTTBEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccc--cCCCeeEE
Confidence 3679999999999999999999998752 244667788887764 34444433
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-07 Score=78.47 Aligned_cols=25 Identities=20% Similarity=-0.040 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..|..++|+|+||+|||||++.|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999999998
|
| >4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.3e-06 Score=83.91 Aligned_cols=99 Identities=13% Similarity=0.208 Sum_probs=61.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCCC---C------Cc------cccceeeeeeEEEEEC-------CeeEEEecCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHSE---A------AS------YEFTTLTCIPGIIHYN-------DTKIQLLDLP 117 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~~---v------~~------~p~tT~~~~~G~i~~~-------g~~i~~~d~~ 117 (317)
..+||+|..++|||||.-+|. |.... + .+ .-|.|.....-.+.|. +..+.++|||
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 479999999999999998885 33211 1 11 1244555545556664 4679999999
Q ss_pred CccccccCCchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHccc
Q 021103 118 GIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (317)
Q Consensus 118 g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~l 168 (317)
|..+. ..+....++.+|..++++|+.... .+.+.+.+.+...++
T Consensus 94 GHvDF-------~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~l 138 (709)
T 4fn5_A 94 GHVDF-------TIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGV 138 (709)
T ss_dssp SCTTC-------HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTC
T ss_pred CCccc-------HHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCC
Confidence 97653 235566778899999999986543 234444444444443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.36 E-value=5.8e-08 Score=89.79 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=38.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND 108 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g 108 (317)
++++.+..|..++|+|+||||||||+|+|+|...+ ..|.|.++|
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~-----------~~g~I~ie~ 210 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPF-----------DQRLITIED 210 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCT-----------TSCEEEEES
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCC-----------CceEEEECC
Confidence 45666778999999999999999999999999887 789988865
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.34 E-value=2.9e-07 Score=76.64 Aligned_cols=39 Identities=26% Similarity=0.398 Sum_probs=32.2
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
+..|..++|+|+||||||||+++|+|. + ..|.+.+++.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~--~-----------~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANL--P-----------GVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTC--S-----------SSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhc--c-----------CCCeEEEcccc
Confidence 345889999999999999999999997 3 45777777654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-07 Score=77.99 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
....|..++|+||||||||||+++|+|..
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 34568999999999999999999999985
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.1e-06 Score=68.08 Aligned_cols=28 Identities=25% Similarity=0.188 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.|..++|+|+||+|||||++++++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998754
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-07 Score=84.95 Aligned_cols=27 Identities=19% Similarity=0.000 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+.+|||+|++|||||||.+.|.+...+
T Consensus 31 ~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 568999999999999999999998754
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.5e-07 Score=91.17 Aligned_cols=56 Identities=2% Similarity=-0.151 Sum_probs=43.7
Q ss_pred cCCcc-cccceeeeeeE-----------eeecCCCCCCCHHHHHHHHH---HhcccCcEEEecCCCChhhH
Q 021103 173 RPPQI-YFKKKKTGGIS-----------FNSTLPLTHVDEKLCYQILH---EYKIHNAEVLFREDATVDDL 228 (317)
Q Consensus 173 ~~~~L-S~g~~qr~~ia-----------lilDEPt~~LD~~~~~~~l~---~l~~~~~~i~~shd~~~~~~ 228 (317)
++..| ||||+||+.|| +++||||++||+.....+.+ .+....++|++||+..+...
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~ 463 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 463 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHH
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 45677 99999999887 78999999999987555544 44444599999999765543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.30 E-value=1e-07 Score=90.79 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=38.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
.++++....|.+++|+|+||||||||+++|+|.+.+ ..|.|.+.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-----------~~G~V~l~g~ 329 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQ-----------QGKSVMLAAG 329 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEECC
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhh-----------cCCeEEEecC
Confidence 456667778999999999999999999999999876 6677777543
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.29 E-value=7.5e-08 Score=85.62 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=22.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++|+||||+|||||+++|+|...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999998643
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.28 E-value=2.1e-07 Score=79.01 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
|++++|+||||||||||+++|+|...+.+ +..|.+.++|.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~~~g--------~~~g~v~~d~~ 61 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALSAQG--------LPAEVVPMDGF 61 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHHHTT--------CCEEEEESGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcC--------CceEEEecCCC
Confidence 78999999999999999999999986410 14566666553
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-07 Score=84.06 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
+|++++|+||||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-----------~~g~V~l~g~D 139 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-----------LGKKVMFCAGD 139 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-----------TTCCEEEECCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-----------cCCEEEEEeec
Confidence 5789999999999999999999999987 67888887654
|
| >3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2.7e-06 Score=80.44 Aligned_cols=60 Identities=20% Similarity=0.229 Sum_probs=45.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc---------------CCCCCccccceeeeeeEEEEEC-----------CeeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT---------------HSEAASYEFTTLTCIPGIIHYN-----------DTKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~---------------~~~v~~~p~tT~~~~~G~i~~~-----------g~~i~~~d~ 116 (317)
..|+|+|++++|||||||.|.|. ....-....||+..+.|.+.|. +..+.++||
T Consensus 68 ~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vvllDT 147 (447)
T 3q5d_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (447)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEEEEcC
Confidence 46999999999999999999985 1122223348888899988774 246889999
Q ss_pred CCcccc
Q 021103 117 PGIIEG 122 (317)
Q Consensus 117 ~g~~~~ 122 (317)
+|+.+.
T Consensus 148 eG~~~~ 153 (447)
T 3q5d_A 148 QGTFDS 153 (447)
T ss_dssp ECCCSS
T ss_pred Cccccc
Confidence 998654
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.4e-06 Score=78.11 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=28.2
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++. .+.+++++|+||+||||++..|++...+
T Consensus 92 ~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp CCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred eeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444 6889999999999999999999998765
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=9.1e-07 Score=80.77 Aligned_cols=24 Identities=33% Similarity=0.551 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|+||||+|||||+++|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 579999999999999999999986
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=78.61 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=28.1
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++....+..++|+|+|||||||++..|++...+
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 344456789999999999999999999998765
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.18 E-value=3.1e-07 Score=83.68 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=34.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK 110 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~ 110 (317)
.+|.+++|+||||||||||+++|+|...+ ..|.|.+.|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-----------~~g~V~l~g~D 166 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-----------HGFSVVIAASD 166 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-----------TTCCEEEEEEC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-----------cCCEEEEEeec
Confidence 46899999999999999999999999877 67777776544
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.14 E-value=6.6e-06 Score=77.56 Aligned_cols=25 Identities=20% Similarity=0.310 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..++++|++||||||++..|+...
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l 124 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYF 124 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-07 Score=80.45 Aligned_cols=35 Identities=23% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHY 106 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~ 106 (317)
.|.++||+|+||||||||+++|+|... | .+|.+.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----------~~G~i~v 115 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLSRWP-----------EHRRVEL 115 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHTTST-----------TCCCEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhCC-----------CCCeEEE
Confidence 378999999999999999999999876 6 6777766
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.12 E-value=4.3e-08 Score=84.69 Aligned_cols=43 Identities=19% Similarity=0.116 Sum_probs=30.9
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
+.+.. ..++|+||||||||||+++|+|...| .+|.|.++|.++
T Consensus 23 ~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~-----------~~G~i~~~g~~~ 65 (227)
T 1qhl_A 23 FDLDE-LVTTLSGGNGAGKSTTMAAFVTALIP-----------DLTLLHFRNTTE 65 (227)
T ss_dssp ECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSC-----------CTTTC-------
T ss_pred EEEcC-cEEEEECCCCCCHHHHHHHHhccccc-----------CCCeEEECCEEc
Confidence 44444 68899999999999999999999988 778888887765
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.2e-07 Score=82.31 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=43.7
Q ss_pred ccCCcccccceeeeeeE----------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhH
Q 021103 172 KRPPQIYFKKKKTGGIS----------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDL 228 (317)
Q Consensus 172 ~~~~~LS~g~~qr~~ia----------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~ 228 (317)
.++..||+||+||+.+| +++||||++||+.....+++.+. ...+++++||+..+...
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~ 351 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDV 351 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGG
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhh
Confidence 45578999999987431 89999999999998776666554 23489999999765443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.2e-06 Score=74.48 Aligned_cols=43 Identities=23% Similarity=0.096 Sum_probs=33.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGI 103 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~ 103 (317)
.|..++|+||||||||||+++|++...+ ......||+.+..|.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e 51 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGE 51 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcc
Confidence 4789999999999999999999998754 334556677766553
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.09 E-value=5.9e-07 Score=86.64 Aligned_cols=42 Identities=17% Similarity=0.130 Sum_probs=35.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT 109 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~ 109 (317)
+.+..|..++|+||||||||||+|+|+|...+ ..|.+.+.|.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~-----------~~giitied~ 296 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPP-----------DAKVVSIEDT 296 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCT-----------TCCEEEEESS
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCC-----------CCCEEEEcCc
Confidence 33456788999999999999999999999977 6777777654
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-06 Score=82.75 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...++++|++|+||||+.+.|++..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999853
|
| >2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-06 Score=63.24 Aligned_cols=33 Identities=48% Similarity=0.756 Sum_probs=30.6
Q ss_pred HHHhCeeEEEecCCCCCCCCCCCEEE-eccceee
Q 021103 284 WEEMGLVRVYTKPQGQQPDFTEPVVL-SVVCYIS 316 (317)
Q Consensus 284 ~~~l~~~~~~~~~~~~~~~~~~p~~~-~~~~~v~ 316 (317)
++.|+.+|||||++|..|++++|++| ++|+||.
T Consensus 6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~ 39 (93)
T 2eki_A 6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVE 39 (93)
T ss_dssp SSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHH
T ss_pred hhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHH
Confidence 56789999999999999999999999 9999984
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.01 E-value=3.6e-06 Score=69.48 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=29.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.++++...+| ..+|+|+||||||||+.+|.+...+
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4667777777 8999999999999999999987654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.1e-06 Score=70.34 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=26.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..|..++|+|+||||||||+++|++...+
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 345889999999999999999999998744
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-06 Score=71.52 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
|..++|+|+||||||||+++|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 46899999999999999999987
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=75.31 Aligned_cols=27 Identities=22% Similarity=0.085 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
++..++++|+|||||||++..|++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999997654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.84 E-value=1.7e-06 Score=75.68 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---ccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLT---GTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~---g~~~~ 88 (317)
.|.+++|+|+|||||||++++|+ |...+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 47899999999999999999999 77655
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.83 E-value=2.3e-06 Score=80.79 Aligned_cols=54 Identities=9% Similarity=-0.029 Sum_probs=42.5
Q ss_pred CCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChhh
Q 021103 174 PPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVDD 227 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~~ 227 (317)
+..||+||++++.+| +++|||+++||+.....+++.+. ..+ ++|++||+..+.+
T Consensus 331 ~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~ 401 (430)
T 1w1w_A 331 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE 401 (430)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT
T ss_pred cccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHH
Confidence 456999999999877 89999999999998777666554 223 7999999954433
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.82 E-value=8.9e-06 Score=68.37 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=24.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|..++|+|+||||||||+++|++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.81 E-value=2.3e-05 Score=70.34 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=26.8
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+++... +..++++|+||+||||++..|++...+
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHH
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 444444 789999999999999999999977643
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.75 E-value=1.3e-05 Score=67.21 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++++...++..++|+|++||||||+.+.|++..
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46778888889999999999999999999999765
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=4e-06 Score=80.51 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.6
Q ss_pred CCCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 52 GEGFEVTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 52 ~~~~~~~~~~g~~valiG~ngaGKSTLln~L~g 84 (317)
+..+.+....+..+.|+|.+||||||++|+|..
T Consensus 157 G~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 157 GEPVVADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp SCEEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 455677777789999999999999999999876
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.70 E-value=1.6e-05 Score=64.81 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..++|+|+||||||||.++|++...
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999998764
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.67 E-value=1e-05 Score=67.45 Aligned_cols=49 Identities=29% Similarity=0.301 Sum_probs=38.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEEec
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLLD 115 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~~d 115 (317)
|+|+||+|||||||++.|....+. .-..+.|||.|..|++ +|.+..+++
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs 54 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVS 54 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeec
Confidence 789999999999999999876542 3457889999988864 466655543
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.9e-05 Score=66.24 Aligned_cols=27 Identities=26% Similarity=0.215 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..++|+|+||||||||.++|++...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999998864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1e-05 Score=66.61 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
|..++|+||||+|||||+++|++...+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 64 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYE 64 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999999998754
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2e-05 Score=67.84 Aligned_cols=25 Identities=24% Similarity=0.141 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.|..++|.|+||||||||+++|++.
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999999987
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.63 E-value=1.4e-05 Score=67.35 Aligned_cols=27 Identities=30% Similarity=0.338 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+..++|+|+||||||||+++|++...+
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 679999999999999999999998754
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.3e-05 Score=67.52 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEE
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGI 103 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~ 103 (317)
.|..++|+|+||||||||.+.|...... ....+.||+.+..|.
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e 55 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKE 55 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCC
Confidence 4778999999999999999999876632 122456777776554
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=2.8e-05 Score=63.57 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..++|+|+|||||||+.++|++..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 36799999999999999999998763
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.40 E-value=3.4e-05 Score=74.95 Aligned_cols=29 Identities=31% Similarity=0.256 Sum_probs=26.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
..|..++|+|+||||||||+++|++.+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 45889999999999999999999999876
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.40 E-value=8.2e-05 Score=70.08 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=27.7
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+...++..++|+||||||||||+++|++...+
T Consensus 21 ~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 21 VGFGESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 45555789999999999999999999987755
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00011 Score=58.90 Aligned_cols=29 Identities=31% Similarity=0.236 Sum_probs=23.0
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..+...+ ...+|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~-g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3455443 4889999999999999999873
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=9.8e-05 Score=62.08 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=24.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+..++|+|++|||||||.+.|++..
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 447899999999999999999999875
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.36 E-value=3.9e-05 Score=71.00 Aligned_cols=31 Identities=19% Similarity=0.027 Sum_probs=27.2
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+++.+..|..++|+||||+|||||+++|+|.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3456677899999999999999999999985
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=63.04 Aligned_cols=27 Identities=19% Similarity=0.086 Sum_probs=24.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|..++|+||||||||||++.|++.
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 345899999999999999999999984
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=9.3e-05 Score=62.95 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+.+++|+|+|||||||+.+.|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999865
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.32 E-value=2.8e-05 Score=67.96 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=28.5
Q ss_pred CcEEEEeC---CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFG---HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~---g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++++.+.. |..++|+|++||||||+.++|++..
T Consensus 37 ~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 55666666 8899999999999999999999865
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=9.1e-05 Score=60.77 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..++|+|++||||||+.++|.+...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998753
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00011 Score=61.62 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g 84 (317)
.++|+|+|||||||+.+.|++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999998
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.30 E-value=3.1e-05 Score=70.16 Aligned_cols=35 Identities=20% Similarity=0.263 Sum_probs=29.8
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++...++..++++|+||+||||++..|++...+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45555667889999999999999999999998765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.30 E-value=9.5e-05 Score=66.92 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=23.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+||+|+||||||||+++|.+...
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999999875
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=5.4e-05 Score=65.84 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
++|+||||+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00012 Score=61.28 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q 021103 64 RVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g 84 (317)
+|+|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00044 Score=61.38 Aligned_cols=51 Identities=14% Similarity=0.108 Sum_probs=39.2
Q ss_pred eeeeeEEEecccCCChhhH----HHHhc-CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 238 YMKCVYVYNKIDVIGIDDV----DKLAR-QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~----~~l~~-~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.+|.++|+||+|+.+.+.. +.+.+ ..+++++||.++.|+++|.+.+.+.+.
T Consensus 50 ~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 50 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred CCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 4799999999999976433 23322 246889999999999999988877653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=8.8e-05 Score=66.42 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.+.+++++|+|||||||+++.|++...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~ 131 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISML 131 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999999998764
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=7.1e-05 Score=66.10 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
++|+||||+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 9999999999999999999976
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00027 Score=58.31 Aligned_cols=30 Identities=13% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
++....+..++|+|++||||||+.+.|+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 344445789999999999999999999865
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00024 Score=61.01 Aligned_cols=28 Identities=14% Similarity=0.091 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|..++|.|++||||||+++.|+....
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999998764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00018 Score=60.76 Aligned_cols=27 Identities=30% Similarity=0.255 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
|..++|+|++||||||+.+.|.+...+
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~ 51 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVR 51 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 678999999999999999999987754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00025 Score=58.30 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..++|+|++|||||||++.|++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5799999999999999999998754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.00041 Score=64.71 Aligned_cols=29 Identities=28% Similarity=0.108 Sum_probs=23.5
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHH--hccCC
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLL--TGTHS 87 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L--~g~~~ 87 (317)
+..|..++|+|+||||||||++.| .+..+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 345899999999999999999955 44443
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0004 Score=58.48 Aligned_cols=28 Identities=32% Similarity=0.284 Sum_probs=22.6
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
..+...+ ...+|+|+|||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3455443 588999999999999999986
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00033 Score=58.57 Aligned_cols=25 Identities=20% Similarity=0.412 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|+|+|||||||+.+.|++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998764
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.001 Score=59.61 Aligned_cols=47 Identities=19% Similarity=0.347 Sum_probs=34.6
Q ss_pred eeeeeEEEecccCCChhh---HHH---Hh-c-CCCeEEEeccccccHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD---VDK---LA-R-QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~---~~~---l~-~-~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..|.++|+||+|+.+... .+. .+ . ...++++||+++.|+++|.+.+.
T Consensus 110 ~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 110 KVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred CCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence 478999999999986542 222 22 1 23578999999999999987653
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00043 Score=67.23 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
+|..++|+||||+|||||+++|++...+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4789999999999999999999998755
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00038 Score=57.12 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
|..++|+|++||||||+.+.|+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999854
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00048 Score=55.56 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00052 Score=56.54 Aligned_cols=27 Identities=33% Similarity=0.337 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+..++|+|++||||||+.+.|+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 367899999999999999999998764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00067 Score=54.59 Aligned_cols=20 Identities=35% Similarity=0.617 Sum_probs=18.7
Q ss_pred cEEEEEcCCCCcHHHHHHHH
Q 021103 63 GRVALIGFPSVGKSTLLTLL 82 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L 82 (317)
..|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0008 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..++|.|++||||||+.+.|+...
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998644
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00086 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|+|++||||||+.+.|+...
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l 27 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVL 27 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4579999999999999999998765
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00091 Score=57.42 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.+++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46799999999999999999999743
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0009 Score=55.52 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|+|++||||||+.+.|+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00097 Score=54.14 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
..|.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0035 Score=56.01 Aligned_cols=47 Identities=26% Similarity=0.275 Sum_probs=34.9
Q ss_pred eeeeeEEEecccCCChhh---HHHH---hcC-CCeEEEeccccccHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD---VDKL---ARQ-PNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~---~~~l---~~~-~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
..|+++|+||+|+..... .+.+ ... ..++.+||+++.|++++.+.+.
T Consensus 115 ~~piilv~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 115 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred CCCEEEEEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence 479999999999986533 2222 111 4688999999999999987664
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.001 Score=54.76 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998643
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0012 Score=54.85 Aligned_cols=25 Identities=16% Similarity=0.191 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
|..|+|.|++||||||+.+.|....
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998765
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0013 Score=56.23 Aligned_cols=27 Identities=22% Similarity=0.154 Sum_probs=21.8
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|..++|+|+||+|||||+..++..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 345889999999999999996665543
|
| >1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ... | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0089 Score=54.66 Aligned_cols=49 Identities=12% Similarity=0.219 Sum_probs=32.4
Q ss_pred eeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 96 TLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 96 T~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
|.......+.+++..+.++|++|-..... .....+++++.++++++...
T Consensus 180 T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~-------~w~~yf~~a~~iIfV~dls~ 228 (353)
T 1cip_A 180 TTGIVETHFTFKDLHFKMFDVGGQRSERK-------KWIHCFEGVTAIIFCVALSD 228 (353)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGG-------GGGGGCTTCSEEEEEEEGGG
T ss_pred eeceEEEEEeeCCeeEEEEeCCCchhhhH-------HHHHHHhcCCEEEEEEECcc
Confidence 33334456677888999999998533211 12234578999999998764
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=55.02 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..|+|.|++||||||+.+.|+....
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999987553
|
| >1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.011 Score=54.15 Aligned_cols=45 Identities=11% Similarity=0.151 Sum_probs=28.4
Q ss_pred eeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 100 IPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 100 ~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
....+.+++..+.++||+|-..... .....+++++.++++++...
T Consensus 192 ~~~~~~~~~~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~ 236 (362)
T 1zcb_A 192 HEYDFEIKNVPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSE 236 (362)
T ss_dssp EEEEEEETTEEEEEEEECC--------------CTTSCTTCCEEEEEEETTC
T ss_pred EEEEeeeCCeEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECcc
Confidence 3345677888999999998533211 11224567999999998765
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=53.85 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|+|||||||+.+.|+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998654
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0005 Score=66.30 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=27.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.++++...+| ..+|+|+||||||||+.+|...
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 4567777777 9999999999999999999655
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0013 Score=55.54 Aligned_cols=23 Identities=35% Similarity=0.273 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
+..|+|.|++||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999986
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0015 Score=53.55 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0015 Score=53.88 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=54.56 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|.|++||||||+.+.|....
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998653
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=53.46 Aligned_cols=24 Identities=38% Similarity=0.469 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|.|+|++||||||+.+.|+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 467999999999999999999854
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00094 Score=58.07 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|+|+|||||||+.+.|....
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998765
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0017 Score=53.35 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|+|.|++||||||+.+.|+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999754
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=63.37 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=28.0
Q ss_pred EEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 56 EVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 56 ~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++....|..++|+||||+|||||+++|++...+
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 344455789999999999999999999998865
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 5689999999999999999998653
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=54.27 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..|+|.|++||||||+.+.|+...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998654
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00067 Score=56.90 Aligned_cols=24 Identities=33% Similarity=0.529 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|+|.|++||||||+++.|.....
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.005 Score=53.88 Aligned_cols=48 Identities=10% Similarity=0.124 Sum_probs=36.1
Q ss_pred eeeeeEEEecccCCChhhH----HHHhcC-CCeEEEeccccccHHHHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDV----DKLARQ-PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~----~~l~~~-~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.+|.++|+||+|+.+.+.. +.+.+. .++ ++||.++.|+++|.+.+.+.
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~ 98 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDR 98 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCT
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHh
Confidence 3799999999999976433 233222 346 99999999999998887654
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0017 Score=54.57 Aligned_cols=23 Identities=26% Similarity=0.497 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997543
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0016 Score=56.62 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|+||||||||-+.|++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0018 Score=55.72 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...++|.||+||||||+.+.|+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998553
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.259 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
...|+|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999865
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=53.28 Aligned_cols=25 Identities=28% Similarity=0.264 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|.|++||||||+.+.|+...
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998653
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=52.66 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..++|+|++|||||||++.|+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4799999999999999999998653
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=54.35 Aligned_cols=23 Identities=26% Similarity=0.431 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|+|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997544
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.31 E-value=0.001 Score=61.32 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=29.3
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++.+.+..|.+++|+|++|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 566777889999999999999999999998764
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0021 Score=54.63 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0012 Score=61.96 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=27.9
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
++++. ++..++++|++|+||||++..|++...+
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34444 6789999999999999999999998765
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.002 Score=57.23 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.|+|||||||+.+.|....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0018 Score=56.12 Aligned_cols=23 Identities=30% Similarity=0.562 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.|+||||+|||||.++|++..
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0025 Score=52.97 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998643
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0058 Score=56.25 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=38.6
Q ss_pred eeeeeEEEecccCCChh--------hHHHHhc---C--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 238 YMKCVYVYNKIDVIGID--------DVDKLAR---Q--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~--------~~~~l~~---~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.+|+++|+||+|+...+ ++....+ . ..++++||++|+|+++|.+.|.+.+..
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 57999999999998642 2222122 1 247899999999999999999876543
|
| >4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.015 Score=54.67 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=38.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-------------CCCccc--cceeeeeeEEEEEC---------C--eeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-------------EAASYE--FTTLTCIPGIIHYN---------D--TKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-------------~v~~~p--~tT~~~~~G~i~~~---------g--~~i~~~d~ 116 (317)
..|+|+|+.++|||+|+|.|.+... +....+ .+....+.|...|. | ..+.++||
T Consensus 68 ~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 68 VAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 4789999999999999997763210 001111 12333466766552 3 34788999
Q ss_pred CCcccc
Q 021103 117 PGIIEG 122 (317)
Q Consensus 117 ~g~~~~ 122 (317)
.|+.+.
T Consensus 148 EG~~d~ 153 (457)
T 4ido_A 148 QGTFDS 153 (457)
T ss_dssp CCBTCT
T ss_pred cCCCCc
Confidence 998654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=54.24 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998654
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0023 Score=58.97 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=22.7
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
..+...+ ...+|+|+|||||||+|.+|.
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 3455544 588999999999999999986
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.002 Score=52.50 Aligned_cols=25 Identities=20% Similarity=0.080 Sum_probs=18.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|.|.|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0016 Score=59.68 Aligned_cols=28 Identities=25% Similarity=0.165 Sum_probs=24.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..|..+.|+||||+|||||+..++....
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999997654
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0026 Score=52.17 Aligned_cols=23 Identities=26% Similarity=0.225 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|.|++||||||+.+.|....
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0025 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|+|++||||||+-+.|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 469999999999999999998643
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0062 Score=56.04 Aligned_cols=51 Identities=22% Similarity=0.104 Sum_probs=37.6
Q ss_pred eeeeeEEEecccCCChh--------hHHHHh-c--C--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 238 YMKCVYVYNKIDVIGID--------DVDKLA-R--Q--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~--------~~~~l~-~--~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.+|+++|+||+|+...+ ++.... . . ..++.+||++|+|+++|.+.|.+...
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 58999999999997543 122111 1 2 15788999999999999999977553
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0016 Score=62.45 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.|+||||+|||||+++|++..
T Consensus 67 vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.003 Score=50.72 Aligned_cols=22 Identities=50% Similarity=0.717 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~ 85 (317)
+|+|.|++||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0029 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
..|+|.|++||||||+.+.|+..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999754
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.0028 Score=51.10 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|.|++||||||+.+.|+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998643
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0033 Score=54.22 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+.+|+|.|++||||||+.+.|+..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999854
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0033 Score=52.28 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|.|++||||||+.+.|+...
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998543
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0034 Score=54.71 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+..|.|+|+|||||||+.+.|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999865
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0035 Score=52.97 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998653
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=52.37 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|.|++||||||+.+.|+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998754
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0032 Score=52.95 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|.|++||||||+.+.|+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998643
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0036 Score=53.21 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~ 85 (317)
.++|.|++||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.011 Score=52.47 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|+||||+|||||.++|++...
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4689999999999999999998764
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0042 Score=50.00 Aligned_cols=24 Identities=38% Similarity=0.429 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|.|++||||||+-+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998643
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0039 Score=52.86 Aligned_cols=27 Identities=30% Similarity=0.111 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|-|++||||||+.+.|...+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999986654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0044 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
++.|+|||||||+|.-+.|+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0038 Score=56.97 Aligned_cols=23 Identities=39% Similarity=0.453 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.++|+|++||||||+.++|++..
T Consensus 26 ~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 26 CVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 58999999999999999999875
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0047 Score=52.24 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..+.|.||+|+|||||++.++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999987653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0045 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.||||+|||||.++|++..
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCcCHHHHHHHHHHHh
Confidence 4579999999999999999999875
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0052 Score=52.24 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+|.|+|||||||+|.-+.|+...
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0056 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..|+|+|++||||||+.+.|+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998654
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0058 Score=49.44 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.|++|+|||||++.++...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998764
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0051 Score=51.19 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
...|+|.|.+||||||+.+.|...
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999999854
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0031 Score=58.32 Aligned_cols=26 Identities=19% Similarity=0.227 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..++|+|++|||||||++.|+....
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 56899999999999999999987654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0043 Score=56.19 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.+.||||+||||+++++++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999875
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0059 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|.|++|+|||||+++|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999997653
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0057 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.303 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..+.|.||||+|||||.+++++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999865
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0047 Score=53.19 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|.|++||||||+.+.|.....
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987654
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.006 Score=52.78 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|.|++||||||+-+.|....
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0057 Score=55.64 Aligned_cols=26 Identities=12% Similarity=0.362 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
+..+.|.|++|+|||||++.+++...
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998653
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0063 Score=53.73 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g 84 (317)
...|+|.|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.004 Score=53.36 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|-|++||||||+.+.|...+.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 377999999999999999999987653
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0074 Score=54.09 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=29.7
Q ss_pred eeeeeEEEecccCCChhh----HHH---Hhc--CCCeEEEeccccccHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDD----VDK---LAR--QPNSVVISCNLKLNLDRLLA 281 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~----~~~---l~~--~~~~v~iSa~~~~~i~~l~~ 281 (317)
.+|.++|+||+|+.+.++ .+. .++ ...++++||.++.|+++|.+
T Consensus 117 ~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~ 169 (307)
T 1t9h_A 117 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIP 169 (307)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGG
T ss_pred CCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHh
Confidence 478899999999987533 222 221 24678888888877665544
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0061 Score=51.62 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
|..|++-|++||||||+.+.|...+.
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0075 Score=55.08 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.+.|.||+|+|||||++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999987654
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.0083 Score=53.11 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
..|.|.|+|||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0074 Score=48.69 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.|++|+|||||.+.++...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998765
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.33 E-value=0.01 Score=54.10 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|..+.|.|+||+|||||...++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 358899999999999999988887554
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.015 Score=48.61 Aligned_cols=26 Identities=27% Similarity=0.087 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..++|+||+|+|||||...|+...
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 56789999999999999999998653
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.01 Score=50.82 Aligned_cols=25 Identities=32% Similarity=0.559 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++||+|+|||||||+.+.|+...
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999997643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.01 Score=51.96 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.||||+|||||.+++++..
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998775
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.01 Score=56.21 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=24.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 58 TKFGHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 58 ~~~~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
....|.+++|+|++|+|||||+|.|++..
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 34458899999999999999999998654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 317 | ||||
| d1wxqa1 | 319 | c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr | 4e-30 | |
| d1lnza2 | 185 | c.37.1.8 (A:158-342) Obg GTP-binding protein middl | 2e-18 | |
| d1jala1 | 278 | c.37.1.8 (A:1-278) YchF GTP-binding protein N-term | 3e-18 | |
| d1udxa2 | 180 | c.37.1.8 (A:157-336) Obg GTP-binding protein middl | 1e-17 | |
| d1ni3a1 | 296 | c.37.1.8 (A:11-306) YchF GTP-binding protein N-ter | 2e-14 | |
| d1xzpa2 | 160 | c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog | 4e-10 | |
| d1egaa1 | 179 | c.37.1.8 (A:4-182) GTPase Era, N-terminal domain { | 3e-08 | |
| d1tq4a_ | 400 | c.37.1.8 (A:) Interferon-inducible GTPase {Mouse ( | 3e-06 | |
| d1nrjb_ | 209 | c.37.1.8 (B:) Signal recognition particle receptor | 5e-06 | |
| d2cxxa1 | 184 | c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc | 6e-06 | |
| d2gj8a1 | 161 | c.37.1.8 (A:216-376) Probable tRNA modification GT | 1e-05 | |
| d1puia_ | 188 | c.37.1.8 (A:) Probable GTPase EngB {Escherichia co | 1e-05 | |
| d1h65a_ | 257 | c.37.1.8 (A:) Chloroplast protein translocon GTPas | 3e-05 | |
| d1wf3a1 | 178 | c.37.1.8 (A:3-180) GTPase Era, N-terminal domain { | 4e-05 | |
| d1mkya2 | 186 | c.37.1.8 (A:173-358) Probable GTPase Der, N-termin | 7e-05 | |
| d1mkya1 | 171 | c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal | 1e-04 | |
| d1svia_ | 195 | c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti | 9e-04 | |
| d2fu5c1 | 173 | c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta | 0.002 | |
| d1x3sa1 | 177 | c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta | 0.002 | |
| d2ew1a1 | 171 | c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta | 0.002 | |
| d3raba_ | 169 | c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI | 0.002 | |
| d2g3ya1 | 172 | c.37.1.8 (A:73-244) GTP-binding protein GEM {Human | 0.004 |
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 114 bits (285), Expect = 4e-30
Identities = 54/301 (17%), Positives = 107/301 (35%), Gaps = 57/301 (18%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIH------------------ 105
+ ++G P+VGKST + T E A+Y FTT+ G+ +
Sbjct: 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQN 61
Query: 106 ------YNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHR--- 156
++++D+ G++ GA EG+G G + + + + ++ V+DA+
Sbjct: 62 YEYRNGLALIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGKTDPEGQP 121
Query: 157 ----------QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTH----VDEKL 202
+ L +E++ + + + K+ K I S + V+E
Sbjct: 122 TDYHDPVEDIEFLEREIDYWIYGILSKGWDKFAKRIKLQKIKLESAIAEHLSGIGVNEND 181
Query: 203 CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262
++ +H+ + + +D D L E R V NK D + + +L R+
Sbjct: 182 VWEAMHKLNLPEDPTKWSQD---DLLAFASEIRRVNKPMVIAANKADAASDEQIKRLVRE 238
Query: 263 PNS-----VVISCNLKLNLDRL--------LARMWEEMGLVRVYTKPQGQQPDFTEPVVL 309
+ S +L L + + E L + K + E V+
Sbjct: 239 EEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLD 298
Query: 310 S 310
Sbjct: 299 R 299
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Score = 79.2 bits (194), Expect = 2e-18
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK-IQLLDLPGIIEG 122
V L+GFPSVGKSTLL++++ + A Y FTTL G++ +D + + DLPG+IEG
Sbjct: 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEG 62
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182
A +G G G Q + + + +++ V+D S EG + + ++
Sbjct: 63 AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPY---DDYLTINQELSEYNLRLTERP 119
Query: 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCV 242
+ + E ++ +Y + + RE + +L+ + +
Sbjct: 120 QIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREG--LRELLFEVANQLENTPEF 177
Query: 243 YVYNKIDV 250
+Y++ ++
Sbjct: 178 PLYDEEEL 185
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Score = 81.1 bits (200), Expect = 3e-18
Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 26/237 (10%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--------------- 108
+ ++G P+VGKSTL LT EAA+Y F T+ G++ D
Sbjct: 4 KCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERI 63
Query: 109 --TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSE-----GHRQILTK 161
T ++ +D+ G++ GAS+G+G G + +A + +D + V+ +++ +
Sbjct: 64 LPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLD 123
Query: 162 ELEAVGLRLN-KRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220
+++ + L ++ + + + +
Sbjct: 124 DIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFELSVMEKILPVLENAGMIRSVGL 183
Query: 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIG---IDDVDKLARQPNSVVISCNLKL 274
+ + + K + N+ +D V ++A + +VV+ +
Sbjct: 184 DKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Score = 77.4 bits (189), Expect = 1e-17
Identities = 47/171 (27%), Positives = 72/171 (42%), Gaps = 10/171 (5%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEG 122
V L+G+P+ GKS+LL +T H + A Y FTTL+ G++ + + L D+PGIIEG
Sbjct: 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEG 62
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKK 182
ASEGKG G + + + ++L VLDA+ ++ R P + K
Sbjct: 63 ASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNK 122
Query: 183 KTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIE 233
L K L + V A + L + +
Sbjct: 123 VDL---------LEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALH 164
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 296 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 69.9 bits (170), Expect = 2e-14
Identities = 32/222 (14%), Positives = 75/222 (33%), Gaps = 32/222 (14%)
Query: 64 RVALIGFPSVGKSTLLTLLTGT-HSEAASYEFTTLTCIPGIIHYNDTKIQLL-------- 114
+ ++G P+VGKST +T + A+Y + T+ + D + L
Sbjct: 12 KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKS 71
Query: 115 ---------DLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEG----------- 154
D+ G+ +GAS G G G ++ ++ D + V+ A
Sbjct: 72 RVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPI 131
Query: 155 HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHN 214
+ + + +K + G N+ +E+ + +++Y
Sbjct: 132 RDLSIIVDELLIKDAEFVEKHLEGLRKITSRG--ANTLEMKAKKEEQAIIEKVYQYLTET 189
Query: 215 AEVLFREDATVDDLIDVIEGNRKY-MKCVYVYNKIDVIGIDD 255
+ + + D + ++ + +Y+ N + +
Sbjct: 190 KQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQ 231
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Score = 55.8 bits (133), Expect = 4e-10
Identities = 24/98 (24%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTKIQLLDLPGIIEG 122
R+ ++G P+VGKSTLL L + T + I +++D G+
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 123 ASE--GKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQI 158
++ + + + + +DIVL VLDAS
Sbjct: 62 TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDR 99
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 50.9 bits (120), Expect = 3e-08
Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 21/177 (11%)
Query: 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEF-TTLTCIPGIIHYNDTKIQLLDLPGIIE 121
G +A++G P+VGKSTLL L G S + TT I GI + +D PG+
Sbjct: 6 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM 65
Query: 122 GASEG--KGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYF 179
+ + + ++V+ V++ ++ +++ + + P I
Sbjct: 66 EEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNK------LREGKAPVILA 119
Query: 180 KKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF---REDATVDDLIDVIE 233
K L + +++ +++ VD + ++
Sbjct: 120 VNKVDNVQEKADL---------LPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 167
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.9 bits (108), Expect = 3e-06
Identities = 29/183 (15%), Positives = 49/183 (26%), Gaps = 18/183 (9%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT----TLTCIPGIIHYNDTKIQLLDLPGI 119
VA+ G GKS+ + L G +E T H N + DLPGI
Sbjct: 58 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGI 117
Query: 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLR----LNKRPP 175
++ D +++ + I K + + K
Sbjct: 118 GSTNFPPDTYLEKMKF--YEYDFFIIISATRFKKNDIDIA-KAISMMKKEFYFVRTKVDS 174
Query: 176 QIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF-----REDATVDDLID 230
I + +F+ L + C E I + L+D
Sbjct: 175 DITNEADGE-PQTFDKEKVLQDIRLN-CVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 232
Query: 231 VIE 233
+
Sbjct: 233 KLI 235
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.2 bits (103), Expect = 5e-06
Identities = 22/180 (12%), Positives = 55/180 (30%), Gaps = 12/180 (6%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGA 123
+ + G + GK++LLTLLT Y+ + + L+D P
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGVTLVDFP---GHV 57
Query: 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKK 183
+ +K ++ ++D++ + L +
Sbjct: 58 KLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIA 117
Query: 184 TGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF-----REDATVDDLIDVIEGNRKY 238
+ P + + + L +I + + E+ ++ +DV++ +
Sbjct: 118 CNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTLDVLQSTDGF 177
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.9 bits (102), Expect = 6e-06
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN 107
+ G +VGKSTL+ LTG T I +
Sbjct: 3 IIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIEIEWKNH 45
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Score = 42.4 bits (98), Expect = 1e-05
Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYE-FTTLTCIPGIIHYNDTKIQLLDLP 117
+V + G P+ GKS+LL L G + + TT + IH + + ++D
Sbjct: 3 KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTA 57
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Score = 42.8 bits (99), Expect = 1e-05
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD 115
VA G + GKS+ L LT S A + + T + + D K +
Sbjct: 18 EVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 69
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 42.5 bits (99), Expect = 3e-05
Identities = 13/93 (13%), Positives = 32/93 (34%), Gaps = 1/93 (1%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122
+ ++G VGKS+ + + G + ++ + + ++D PG+IEG
Sbjct: 34 TILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEG 93
Query: 123 ASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGH 155
+ + I +++
Sbjct: 94 GYINDMALNIIKSFLLDKTIDVLLYVDRLDAYR 126
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Score = 41.3 bits (95), Expect = 4e-05
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 59 KFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTL-TCIPGIIHYNDTKIQ 112
K G VA++G P+VGKSTLL L G S T + GI+ +I
Sbjct: 2 KTYSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIV 56
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 40.4 bits (93), Expect = 7e-05
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTH-SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118
+VA++G P+VGKSTL + + + TT + + + K +D G
Sbjct: 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 65
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Score = 39.4 bits (90), Expect = 1e-04
Identities = 11/43 (25%), Positives = 14/43 (32%)
Query: 65 VALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN 107
V ++G P+VGKSTL L E
Sbjct: 3 VLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEW 45
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Score = 37.4 bits (85), Expect = 9e-04
Identities = 12/50 (24%), Positives = 19/50 (38%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQL 113
+AL G +VGKS+ + L + A + T ND +
Sbjct: 25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFV 74
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Score = 36.7 bits (84), Expect = 0.002
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIE 121
++ LIG VGK+ +L + + + I + +I Q+ D G
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQER 67
Query: 122 GASEGKGRGRQVIAVSKSSDIVLMVLDASKSE 153
+ R + +++V D + +
Sbjct: 68 FRTITTAYYRG-------AMGIMLVYDITNEK 92
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN--DTKIQLLDLPG 118
++ +IG VGKS+LL T + + I + K+ + D G
Sbjct: 9 KILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAG 65
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.9 bits (82), Expect = 0.002
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPG 118
++ LIG VGK+ L+ T + + + N K+ Q+ D G
Sbjct: 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG 63
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.0 bits (82), Expect = 0.002
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 64 RVALIGFPSVGKSTLLT-LLTGTHSEAASYEFTTLTCIPGI-IHYNDTKIQLLDLPG 118
++ +IG SVGK++ L + + A + I + K+Q+ D G
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG 63
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.5 bits (80), Expect = 0.004
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND 108
RV LIG VGKSTL + G H S D
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD 49
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.97 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.97 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.97 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.97 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.96 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.96 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.96 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.96 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.95 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.95 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.95 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.93 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.93 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.93 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.93 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.92 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.92 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.89 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 99.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 99.85 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 99.84 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 99.84 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 99.82 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 99.81 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 99.8 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 99.78 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 99.78 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 99.77 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 99.75 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 99.7 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 99.7 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 99.66 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 99.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.59 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.58 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 99.55 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.54 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 99.53 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 99.51 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 99.5 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 99.5 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.49 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 99.49 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 99.47 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 99.46 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 99.45 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 99.44 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 99.43 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.43 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 99.43 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.42 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 99.42 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 99.41 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 99.4 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 99.39 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 99.39 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 99.39 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 99.39 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 99.37 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 99.37 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.36 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 99.36 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 99.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 99.36 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 99.35 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 99.35 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 99.31 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 99.31 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.3 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 99.3 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 99.28 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 99.27 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 99.27 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 99.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 99.25 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 99.23 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 99.22 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 99.19 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 99.18 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 99.17 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 99.15 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 99.13 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.11 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 99.09 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 99.08 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 99.0 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 98.97 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 98.94 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 98.91 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 98.9 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 98.81 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.78 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 98.66 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 98.59 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 98.5 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 98.43 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 98.42 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 98.39 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 98.33 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 98.1 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.92 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.87 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.73 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.59 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.57 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.55 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.45 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.42 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.42 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.42 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.36 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.34 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 97.34 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.3 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.28 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.26 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.24 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.22 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.19 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.15 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.12 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.1 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.1 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.08 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.05 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.05 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.05 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.01 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.97 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 96.97 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.96 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.94 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 96.87 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.85 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 96.84 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.82 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.81 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 96.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.78 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 96.77 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.76 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 96.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.75 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.73 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 96.73 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.72 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.7 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.7 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 96.69 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.68 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.68 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.65 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.64 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.6 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.57 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 96.49 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.32 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.32 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.16 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.13 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 96.1 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.09 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.03 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.92 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.8 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.8 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.73 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.71 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 95.71 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.68 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.63 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.59 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.59 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.58 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.5 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.47 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.37 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.35 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.32 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.31 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 95.28 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.23 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.23 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.16 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.09 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 95.07 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 94.98 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.95 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.91 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.89 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.85 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 94.83 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.79 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 94.65 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.63 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.48 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.4 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.31 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 94.23 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.14 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.95 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.94 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 93.94 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.84 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.82 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.79 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.75 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.7 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.53 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.32 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.31 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.02 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.99 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.68 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 92.63 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.63 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 92.37 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 92.25 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 92.22 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.74 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 91.42 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 90.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.95 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 90.79 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.66 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 90.57 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 90.43 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.21 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.48 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 88.97 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 88.96 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 88.95 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 88.32 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.19 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 86.37 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 85.47 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.37 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 85.06 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.56 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.42 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.71 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 81.37 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 80.52 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.97 E-value=1.8e-32 Score=236.95 Aligned_cols=188 Identities=16% Similarity=0.173 Sum_probs=135.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++++|+++||+||||||||||+++|+|+..| ++|.|.++|.++...+............++++|
T Consensus 20 ~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p-----------~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q 88 (240)
T d1g2912 20 REMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEP-----------SRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQ 88 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEEEEEGGGTEECCGGGSSEEEECS
T ss_pred cceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCCEEEECCEEecccchhhhcccccccceeccc
Confidence 578899999999999999999999999999999988 899999999988655432222222334444444
Q ss_pred HHhhhcc---CcEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 89 ~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~ 168 (240)
T d1g2912 89 SYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168 (240)
T ss_dssp CCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred chhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 4333322 2222222221 2233445678999999999 77999999999999999999 99999999
Q ss_pred CCCHHHHHHHHH---Hhcc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhc
Q 021103 197 HVDEKLCYQILH---EYKI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLAR 261 (317)
Q Consensus 197 ~LD~~~~~~~l~---~l~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~ 261 (317)
+||+.....+++ .+.. .+ |+|++|||.. +..+| ..++|+++.-++..+..+++..
T Consensus 169 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~----------drv~vm~~G~iv~~G~~~el~~ 229 (240)
T d1g2912 169 NLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMG----------DRIAVMNRGVLQQVGSPDEVYD 229 (240)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEEEEECHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHHh
Confidence 999998655544 4433 24 9999999954 44544 4578888887765554444443
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=5.5e-32 Score=232.66 Aligned_cols=183 Identities=21% Similarity=0.246 Sum_probs=111.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+++||+||||||||||+|+|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 17 ~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p-----------~sG~I~i~g~~i~--~~~----~~~r~ig~v~Q 79 (232)
T d2awna2 17 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETI-----------TSGDLFIGEKRMN--DTP----PAERGVGMVFQ 79 (232)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEESSSCCT--TSC----GGGTCEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCC-----------CCCEEEECCEECC--CCc----hhhceeeeecc
Confidence 478999999999999999999999999999999988 8999999998763 111 12334555555
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 80 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts 159 (232)
T d2awna2 80 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 159 (232)
T ss_dssp SCCC---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTT
T ss_pred ccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 5443333 34444433222 233445678999999999 78999999999999999999 99999999
Q ss_pred CCCHHHHHHHHHHhc----ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 197 HVDEKLCYQILHEYK----IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~----~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+||+....++++.+. ..+ |+|++|||.+ +..+| ..++|+++.-++..+..+++...
T Consensus 160 ~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~----------dri~vm~~G~iv~~G~~~el~~~ 221 (232)
T d2awna2 160 NLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLA----------DKIVVLDAGRVAQVGKPLELYHY 221 (232)
T ss_dssp TSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHC----------SEEEEEETTEEEEEECHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEEEeCHHHHHhC
Confidence 999998665555443 334 9999999954 44444 45788888877655555555443
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=5.6e-32 Score=233.41 Aligned_cols=184 Identities=17% Similarity=0.229 Sum_probs=132.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|++++|+||||||||||+++|+|+..| ++|.|.++|.++.. .+ .....+++++|
T Consensus 23 ~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p-----------~sG~I~i~g~~i~~--~~----~~~r~ig~v~Q 85 (239)
T d1v43a3 23 NKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP-----------TEGRIYFGDRDVTY--LP----PKDRNISMVFQ 85 (239)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTT--SC----GGGGTEEEEEC
T ss_pred cceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCC-----------CCCEEEEcceeccc--CC----cccceEEEEee
Confidence 478999999999999999999999999999999988 89999999987632 11 12234555555
Q ss_pred HHhhhccC---cEEEEEecC--CCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKSS---DIVLMVLDA--SKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~~--~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+... +++.+.... .......+++.++|+.+++ ..++++.+|||||+||++|| +++||||+
T Consensus 86 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts 165 (239)
T d1v43a3 86 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 165 (239)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred chhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcc
Confidence 54444332 222222211 2233445678899999999 78999999999999999998 99999999
Q ss_pred CCCHHHHHHH---HHHhc-ccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 197 HVDEKLCYQI---LHEYK-IHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~-~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
+||+.....+ +..+. ..+ |+|++|||... .++| ..++|+++.-++..+..+++...|
T Consensus 166 ~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~----------dri~vm~~G~iv~~G~~~el~~~P 228 (239)
T d1v43a3 166 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG----------DRIAVMNRGQLLQIGSPTEVYLRP 228 (239)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC----------SEEEEEETTEEEEEECHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999985555 44543 224 99999999554 4444 458889988777655555554443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.97 E-value=4.4e-32 Score=234.30 Aligned_cols=189 Identities=14% Similarity=0.204 Sum_probs=139.1
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|++++.|+++||+||||||||||+++|+|+..| ++|.|.++|.++...+. ......+...++++|
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p-----------~~G~I~~~g~~i~~~~~-~~~~~~rr~ig~vfQ 89 (242)
T d1oxxk2 22 DNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVP-----------STGELYFDDRLVASNGK-LIVPPEDRKIGMVFQ 89 (242)
T ss_dssp EEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCC-----------SEEEEEETTEEEEETTE-ESSCGGGSCEEEEET
T ss_pred eceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCC-----------CCceEEECCEEeecCch-hhcchhhccceEEec
Confidence 478999999999999999999999999999999988 89999999998865321 111222344566666
Q ss_pred HHhhhcc---CcEEEEEecCC--CchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS--KSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~--~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....++. .+++.+.+... ......+++.++|+.+++ ..++++.+||||||||++|| +++||||+
T Consensus 90 ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~ 169 (242)
T d1oxxk2 90 TWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169 (242)
T ss_dssp TSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred cccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCcc
Confidence 5544433 34443333322 233445678999999999 78999999999999999999 99999999
Q ss_pred CCCHHHHHHH---HHHhc-ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCC
Q 021103 197 HVDEKLCYQI---LHEYK-IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQP 263 (317)
Q Consensus 197 ~LD~~~~~~~---l~~l~-~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~ 263 (317)
+||+.....+ +..+. ..+ |+|++|||.. +.++| ..++++++.-++..+..+++.+.|
T Consensus 170 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~----------dri~vm~~G~iv~~g~~~el~~~P 232 (242)
T d1oxxk2 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIA----------DRVGVLVKGKLVQVGKPEDLYDNP 232 (242)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHC----------SEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999875554 44553 324 9999999955 34444 457888888777655555555443
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.97 E-value=8.3e-33 Score=237.74 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=122.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||+++.|+.+||+||||||||||+++|+|+..| ++|.|.++|.++...+...+....+..+++++|
T Consensus 22 ~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p-----------~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q 90 (230)
T d1l2ta_ 22 KNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP-----------TEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQ 90 (230)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCHHHHHHHHHHHEEEECT
T ss_pred eceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCC-----------CcceeEECCEEcCcCChhhcchhhcceEEEEec
Confidence 578999999999999999999999999999999988 899999999876422100000000112233333
Q ss_pred HHhhhccC---cEEEEEec-----CCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE---------eeec
Q 021103 133 VIAVSKSS---DIVLMVLD-----ASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS---------FNST 192 (317)
Q Consensus 133 ~~~~~~~~---d~i~~v~~-----~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia---------lilD 192 (317)
....+... +++.+... ........+.+.+.|+.+++ ..+++|.+|||||+||++|| +++|
T Consensus 91 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllD 170 (230)
T d1l2ta_ 91 QFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170 (230)
T ss_dssp TCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred chhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEec
Confidence 32222221 12221111 11223345567888999998 36889999999999999999 9999
Q ss_pred CCCCCCCHHHHHHHHHHhc----ccC-cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCC
Q 021103 193 LPLTHVDEKLCYQILHEYK----IHN-AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVI 251 (317)
Q Consensus 193 EPt~~LD~~~~~~~l~~l~----~~~-~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~ 251 (317)
|||++||+.....+++.+. ..+ |+|++|||.++.++| ..++++++.-++
T Consensus 171 EPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~----------drv~~m~~G~Iv 224 (230)
T d1l2ta_ 171 QPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFG----------ERIIYLKDGEVE 224 (230)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTS----------SEEEEEETTEEE
T ss_pred CCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhC----------CEEEEEECCEEE
Confidence 9999999998666555543 334 899999997655544 457788776544
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=4.1e-31 Score=227.65 Aligned_cols=181 Identities=18% Similarity=0.179 Sum_probs=131.6
Q ss_pred CcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHH
Q 021103 54 GFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQV 133 (317)
Q Consensus 54 ~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~ 133 (317)
+++|++. +++++|+||||||||||+++|+|+..| ++|.|.++|.++.-.+ . .+..+++++|.
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p-----------~~G~I~~~G~~i~~~~--~----~~r~ig~v~Q~ 78 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKP-----------DRGEVRLNGADITPLP--P----ERRGIGFVPQD 78 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCC-----------SEEEEEETTEECTTSC--T----TTSCCBCCCSS
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCC-----------CceEEEECCEECCcCC--H----HHcCceeeccc
Confidence 5666764 479999999999999999999999988 8999999998874222 1 23345555554
Q ss_pred Hhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCCC
Q 021103 134 IAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHVD 199 (317)
Q Consensus 134 ~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~LD 199 (317)
...++. .+++.+.+.........+++.++++.+++ ..++++.+|||||+||++|| +++||||++||
T Consensus 79 ~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD 158 (240)
T d2onka1 79 YALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVD 158 (240)
T ss_dssp CCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCC
T ss_pred hhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCC
Confidence 443333 23333323222333445678999999999 78999999999999999999 99999999999
Q ss_pred HHHHHHHHHH---hcc-cC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 200 EKLCYQILHE---YKI-HN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 200 ~~~~~~~l~~---l~~-~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
+.....+++. +.. .+ ++|++|||.+ +.++| ..++|+++.-++..+..+++.+.
T Consensus 159 ~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~a----------dri~vm~~G~ii~~G~~~el~~~ 217 (240)
T d2onka1 159 LKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA----------DEVAVMLNGRIVEKGKLKELFSA 217 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHC----------SEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC----------CEEEEEECCEEEEEecHHHHhcC
Confidence 9986555544 433 24 9999999944 44544 45788888877766655555543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.96 E-value=1.5e-31 Score=229.30 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=132.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+++||+||||||||||+++|+|+..| ++|.|.++|.++. +.+ ......++++|
T Consensus 17 ~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p-----------~sG~I~~~G~~i~--~~~----~~~r~ig~v~Q 79 (229)
T d3d31a2 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP-----------DSGRILLDGKDVT--DLS----PEKHDIAFVYQ 79 (229)
T ss_dssp EEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC-----------SEEEEEETTEECT--TSC----HHHHTCEEECT
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCC-----------CCCEEEEccEecc--ccc----hhHhcceeecc
Confidence 578999999999999999999999999999999988 8999999998863 211 11223444444
Q ss_pred HHhhhcc---CcEEEEEecCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
....+.. .+++.+....... ...+++.+.++.+++ ..++++.+|||||+||++|| +++||||++|
T Consensus 80 ~~~l~~~~tV~enl~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~L 158 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRMKKI-KDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSAL 158 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCC-CCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTS
T ss_pred ccccCccccHHHHHHHHHhhccc-cHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCC
Confidence 4333332 2222222211111 134578889999999 78999999999999999999 9999999999
Q ss_pred CHHHHHH---HHHHhc-ccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcC
Q 021103 199 DEKLCYQ---ILHEYK-IHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQ 262 (317)
Q Consensus 199 D~~~~~~---~l~~l~-~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~ 262 (317)
|+....+ ++..+. ..+ |+|++|||.. +.++| ..++|+++..++..+..+++.+.
T Consensus 159 D~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~----------drv~vm~~G~iv~~g~~~el~~~ 218 (229)
T d3d31a2 159 DPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMA----------DRIAVVMDGKLIQVGKPEEIFEK 218 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHC----------SEEEEESSSCEEEEECHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHHhC
Confidence 9987554 444543 335 8999999954 44444 45888998888766655555544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=7e-32 Score=233.17 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=125.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|+++||+||||||||||+++|+|+..| ++|.|.++|.++.-.+...+. ..+...++++|
T Consensus 22 ~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p-----------~sG~I~~~g~~i~~~~~~~~~-~~rr~ig~VfQ 89 (240)
T d3dhwc1 22 NNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP-----------TEGSVLVDGQELTTLSESELT-KARRQIGMIFQ 89 (240)
T ss_dssp EEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEECTTCHHHHH-HHHHHEEECCS
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccc-----------cCCceEEcCeEeeeCChhhhh-hhhcccccccc
Confidence 578999999999999999999999999999999988 899999999887422100000 00011222233
Q ss_pred HHhhhcc---CcEEEEEec--CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLD--ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~--~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.+. ........+++.++|+.+|+ ..++++.+|||||+||++|| |++||||+
T Consensus 90 ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~ 169 (240)
T d3dhwc1 90 HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATS 169 (240)
T ss_dssp SCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGG
T ss_pred ccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccc
Confidence 2222221 111222111 12233345678999999999 78999999999999999998 99999999
Q ss_pred CCCHHHHHHHHHH---hccc-C-cEEEecCCCChh-hHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 197 HVDEKLCYQILHE---YKIH-N-AEVLFREDATVD-DLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 197 ~LD~~~~~~~l~~---l~~~-~-~~i~~shd~~~~-~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
+||+.....+++. +... + |+|++|||.... .+| ..++|+++.-++..+.
T Consensus 170 ~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~----------dri~vl~~G~iv~~G~ 224 (240)
T d3dhwc1 170 ALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRIC----------DCVAVISNGELIEQDT 224 (240)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHC----------SEEEEEETTEEEEEEE
T ss_pred cCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhC----------CEEEEEECCEEEEECC
Confidence 9999986555544 4432 5 999999996543 444 4577888776554333
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.96 E-value=1.5e-30 Score=227.97 Aligned_cols=189 Identities=15% Similarity=0.148 Sum_probs=129.8
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCC-ccc--------cc
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPG-IIE--------GA 123 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g-~~~--------~~ 123 (317)
.++||++..|+++||+||||||||||+++|+|+..| ++|.|.++|.++....... ... ..
T Consensus 19 ~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p-----------~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~ 87 (258)
T d1b0ua_ 19 KGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP-----------SEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 87 (258)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred cceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccC-----------CCCCEEECCEEeccCCccchhcccccHhHHHHH
Confidence 578999999999999999999999999999999988 8999999999876543211 000 00
Q ss_pred cCCchhHHHHHhhhccC---cEEEEE-e--cCCCchhhHHHHHHHHHHccc---cccccCCcccccceeeeeeE------
Q 021103 124 SEGKGRGRQVIAVSKSS---DIVLMV-L--DASKSEGHRQILTKELEAVGL---RLNKRPPQIYFKKKKTGGIS------ 188 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~---d~i~~v-~--~~~~~~~~~~~~~~~L~~~~l---~~~~~~~~LS~g~~qr~~ia------ 188 (317)
+..+++++|....+... +.+.+. . .........+++.++|+.+++ ..++++.+|||||+||++||
T Consensus 88 r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~ 167 (258)
T d1b0ua_ 88 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 167 (258)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred hcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcC
Confidence 01111122221111111 111111 1 111223345678889999999 35678999999999999999
Q ss_pred ---eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCCh-hhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 ---FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDATV-DDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 ---lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~~-~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||+....++ ++.+...+ |+|++|||... ..+| ..++|+++.-++.....+++.
T Consensus 168 P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~a----------dri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 168 PDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVS----------SHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHC----------SEEEEEETTEEEEEECHHHHH
T ss_pred CCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHH
Confidence 999999999999985554 45555445 89999999554 3444 458899988877655555555
Q ss_pred cC
Q 021103 261 RQ 262 (317)
Q Consensus 261 ~~ 262 (317)
..
T Consensus 238 ~~ 239 (258)
T d1b0ua_ 238 GN 239 (258)
T ss_dssp HS
T ss_pred hC
Confidence 44
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.95 E-value=6.5e-30 Score=221.88 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=120.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++..|+++||+||||||||||+|+|+|..+| ++|.|.++|.++.... . ....+.+..+.+|
T Consensus 23 ~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p-----------~~G~I~~~G~~i~~~~--~-~~~~r~gi~~~~q 88 (240)
T d1ji0a_ 23 KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA-----------QKGKIIFNGQDITNKP--A-HVINRMGIALVPE 88 (240)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCC--H-HHHHHTTEEEECS
T ss_pred eeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC-----------CccEEEeccccccccc--H-HHHHHhcccccCc
Confidence 588999999999999999999999999999999988 8999999998753211 0 0000111112222
Q ss_pred HHhhhcc---CcEEEEEecCC-CchhhHHHHHHHHHHc-cc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVLDAS-KSEGHRQILTKELEAV-GL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~~~~-~~~~~~~~~~~~L~~~-~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+..... ......+.+...++.+ ++ ..++++.+||||||||+.|| +++||||+
T Consensus 89 ~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~ 168 (240)
T d1ji0a_ 89 GRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp SCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred ccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCc
Confidence 1111111 11111111111 1222334455566665 45 67889999999999999998 99999999
Q ss_pred CCCHHHHHH---HHHHhcccC-cEEEecCCC-ChhhHHHHHhcccceeeeeEEEecccCCChhhHH
Q 021103 197 HVDEKLCYQ---ILHEYKIHN-AEVLFREDA-TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD 257 (317)
Q Consensus 197 ~LD~~~~~~---~l~~l~~~~-~~i~~shd~-~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~ 257 (317)
+||+....+ +++.++..+ |++++|||. .+.++| ..++|+++.-++.....+
T Consensus 169 gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~----------drv~vl~~G~iv~~g~~~ 224 (240)
T d1ji0a_ 169 GLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVA----------HYGYVLETGQIVLEGKAS 224 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHC----------SEEEEEETTEEEEEEEHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEEEcCHH
Confidence 999988554 555555455 999999994 444544 457788887666443333
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=1.2e-29 Score=222.21 Aligned_cols=176 Identities=22% Similarity=0.188 Sum_probs=121.6
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+++||+||||||||||+|+|+|...| ++|.|.++|.++...+. ......++++.+|
T Consensus 21 ~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p-----------~~G~I~~~g~~i~~~~~---~~~~~~gi~~v~Q 86 (254)
T d1g6ha_ 21 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKA-----------DEGRVYFENKDITNKEP---AELYHYGIVRTFQ 86 (254)
T ss_dssp EEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEECTTCCH---HHHHHHTEEECCC
T ss_pred cceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcC-----------CCcEEEECCEeccchhH---HHHHHhcCCccCC
Confidence 477888889999999999999999999999999988 89999999987632110 0001112222223
Q ss_pred HHhhhcc---CcEEEEEe---------------cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----
Q 021103 133 VIAVSKS---SDIVLMVL---------------DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---- 188 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~---------------~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---- 188 (317)
....+.. .+++.+.. .........+++.++++.+++ ..++++.+|||||+||+.||
T Consensus 87 ~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~ 166 (254)
T d1g6ha_ 87 TPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALM 166 (254)
T ss_dssp CCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHH
T ss_pred ccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHH
Confidence 2222222 12221110 011122234567788888888 67889999999999999998
Q ss_pred -----eeecCCCCCCCHHHHHHH---HHHhcccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCC
Q 021103 189 -----FNSTLPLTHVDEKLCYQI---LHEYKIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIG 252 (317)
Q Consensus 189 -----lilDEPt~~LD~~~~~~~---l~~l~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~ 252 (317)
+++||||++||+....++ +..++..+ +++++|||.+ +.++|| .++|+++.-++.
T Consensus 167 ~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~D----------rv~vm~~G~iv~ 230 (254)
T d1g6ha_ 167 TNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYID----------HLYVMFNGQIIA 230 (254)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCS----------EEEEEETTEEEE
T ss_pred hCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCC----------EEEEEeCCEEEE
Confidence 999999999999875544 55555555 8999999954 455554 577888776553
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=1.1e-29 Score=220.15 Aligned_cols=182 Identities=15% Similarity=0.147 Sum_probs=124.2
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||++.+|+++||+||||||||||||+|+|...| ++|.|.++|.++. +.+ ...+...++.+|
T Consensus 19 ~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p-----------~~G~i~i~G~~i~--~~~---~~~~~~i~~vpq 82 (238)
T d1vpla_ 19 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKP-----------SSGIVTVFGKNVV--EEP---HEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETT--TCH---HHHHTTEEEECT
T ss_pred ccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC-----------CCCEEEECcEecc--cCh---HHHHhhEeEeee
Confidence 578999999999999999999999999999999988 8999999997642 100 001111122222
Q ss_pred HHhhhcc---CcEEEEEe--cCCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE---------eeecCCCC
Q 021103 133 VIAVSKS---SDIVLMVL--DASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------FNSTLPLT 196 (317)
Q Consensus 133 ~~~~~~~---~d~i~~v~--~~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------lilDEPt~ 196 (317)
....+.. .+++.+.. .........+.+..+++.+++ ..++++..|||||+||+.+| +++||||+
T Consensus 83 ~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~ 162 (238)
T d1vpla_ 83 EAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTS 162 (238)
T ss_dssp TCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred ccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 1111111 11111111 112223344567788888898 78899999999999999998 99999999
Q ss_pred CCCHHHHH---HHHHHhcccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 197 HVDEKLCY---QILHEYKIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 197 ~LD~~~~~---~~l~~l~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+||+.... ++++.+...+ |+|++|||.+ +..+| ..++|++..-++..+..+++.
T Consensus 163 gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~----------drv~vl~~G~iv~~g~~~el~ 221 (238)
T d1vpla_ 163 GLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLC----------DRIALIHNGTIVETGTVEELK 221 (238)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTC----------SEEEEEETTEEEEEEEHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC----------CEEEEEECCEEEEEcCHHHHH
Confidence 99998754 4555555455 9999999944 44444 447778777666555555543
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.93 E-value=2.2e-28 Score=212.44 Aligned_cols=179 Identities=15% Similarity=0.120 Sum_probs=119.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|.+.+|+++||+||||||||||+++|+|...| .+|.|.++|.++.-++...+ +..+++++|
T Consensus 19 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 83 (242)
T d1mv5a_ 19 RDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP-----------TAGEITIDGQPIDNISLENW----RSQIGFVSQ 83 (242)
T ss_dssp EEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCC-----------SBSCEEETTEESTTTSCSCC----TTTCCEECC
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCC-----------CCCEEEECCEEeccccHHHH----HhheEEEcc
Confidence 588999999999999999999999999999999988 89999999988643332222 222333344
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.... ......+.+.++..++ .+.....+|||||+||++||
T Consensus 84 ~~~lf~~ti~eNi~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~i 160 (242)
T d1mv5a_ 84 DSAIMAGTIRENLTYGLEG---DYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (242)
T ss_dssp SSCCCCEEHHHHTTSCTTS---CSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccccCCcchhhheeccccc---ccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3222211 1122111111 1112223333333222 22334568999999999999
Q ss_pred eeecCCCCCCCHHH---HHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKL---CYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~---~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.. +.+.++.+....|+|++||+...... ...|+|+++.-++..+..+++
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~----------~D~i~vl~~G~iv~~G~~~eL 224 (242)
T d1mv5a_ 161 LMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD----------ADKIYFIEKGQITGSGKHNEL 224 (242)
T ss_dssp EEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH----------CSEEEEEETTEECCCSCHHHH
T ss_pred EEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHh----------CCEEEEEECCEEEEECCHHHH
Confidence 99999999999886 55556555555599999999654443 356899999888765544443
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=1e-27 Score=207.73 Aligned_cols=179 Identities=11% Similarity=0.060 Sum_probs=116.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++||.+.+|+++||+|+||||||||+++|+|+..| .+|.|.++|.++..++... .+...++++|
T Consensus 20 ~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~----lr~~i~~v~Q 84 (241)
T d2pmka1 20 DNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP-----------ENGQVLIDGHDLALADPNW----LRRQVGVVLQ 84 (241)
T ss_dssp EEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEETTTSCHHH----HHHHEEEECS
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC-----------CCCEEEECCEEecccchhh----hhceEEEEec
Confidence 578999999999999999999999999999999988 8999999998753221100 0111111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+.. +....+.+...++..++ .+...+..|||||+||++||
T Consensus 85 ~~~lf~~Ti~eNi~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~i 160 (241)
T d2pmka1 85 DNVLLNRSIIDNISLAN----PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKI 160 (241)
T ss_dssp SCCCTTSBHHHHHCTTS----TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSE
T ss_pred ccccCCccccccccccC----ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccch
Confidence 1111110 11121111 11111222222222221 34556789999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||+.+...+++.+. ...|+|++||+...... ...|+|+++.-++..+..+++.
T Consensus 161 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~----------~D~i~vl~~G~Iv~~G~~~ell 225 (241)
T d2pmka1 161 LIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKN----------ADRIIVMEKGKIVEQGKHKELL 225 (241)
T ss_dssp EEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTT----------SSEEEEEETTEEEEEECHHHHH
T ss_pred hhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHh----------CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999998776666554 34499999999765443 3568888888776555555544
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.93 E-value=9.6e-28 Score=209.70 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=115.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+.+.+|+++||+||||||||||+++|+|+..| .+|.|.++|.++..++...+ +...++..|
T Consensus 32 ~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~~----r~~i~~v~Q 96 (253)
T d3b60a1 32 RNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI-----------DEGHILMDGHDLREYTLASL----RNQVALVSQ 96 (253)
T ss_dssp EEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCC-----------SEEEEEETTEETTTBCHHHH----HHTEEEECS
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCC-----------CccEEEECCcccchhhhhhh----hheEEEEee
Confidence 588999999999999999999999999999999988 89999999987532221000 001111111
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHH---------Hc--cc--cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELE---------AV--GL--RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~---------~~--~l--~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+ ........+.+.+.++ .+ |+ .+...+..|||||+||++||
T Consensus 97 ~~~l~~~ti~~n~~~---~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~i 173 (253)
T d3b60a1 97 NVHLFNDTVANNIAY---ARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPI 173 (253)
T ss_dssp SCCCCSSBHHHHHHT---TTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSE
T ss_pred ccccCCcchhhhhhh---cCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 1110000 000000 1101111223333333 22 23 45566789999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
+++||||++||+.....+++.+. ...|+|++||+....+. ...|+|+++.-++..+..+++
T Consensus 174 lilDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~----------~D~v~vl~~G~Iv~~G~~~eL 237 (253)
T d3b60a1 174 LILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQ----------ADEIVVVEDGIIVERGTHSEL 237 (253)
T ss_dssp EEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTT----------CSEEEEEETTEEEEEECHHHH
T ss_pred EEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHh----------CCEEEEEECCEEEEECCHHHH
Confidence 99999999999998666655553 44599999999664443 456889988776654443333
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1e-27 Score=209.22 Aligned_cols=182 Identities=12% Similarity=0.068 Sum_probs=116.5
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.+++|++++|+++||+||||||||||+++|+|+..| .+|.|.++|.++.-++.. ..+...++++|
T Consensus 31 ~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p-----------~~G~I~i~g~~i~~~~~~----~~r~~i~~v~Q 95 (251)
T d1jj7a_ 31 QGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQP-----------TGGQLLLDGKPLPQYEHR----YLHRQVAAVGQ 95 (251)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGBCHH----HHHHHEEEECS
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCC-----------CcCEEEECCEecchhhhH----HHHHHhhhccc
Confidence 588999999999999999999999999999999988 899999999876322210 00111111222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhh------HHHHHHHHHHc--cc--cccccCCcccccceeeeeeE---------eee
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGH------RQILTKELEAV--GL--RLNKRPPQIYFKKKKTGGIS---------FNS 191 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~------~~~~~~~L~~~--~l--~~~~~~~~LS~g~~qr~~ia---------lil 191 (317)
....+.. .+++.+.......... ...+.+.++.+ ++ .++..+.+|||||+||++|| +++
T Consensus 96 ~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ilil 175 (251)
T d1jj7a_ 96 EPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLIL 175 (251)
T ss_dssp SCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEe
Confidence 1111110 1111111111111111 01112333333 23 45677889999999999999 999
Q ss_pred cCCCCCCCHHHHHHHHHHhc---c--cCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHH
Q 021103 192 TLPLTHVDEKLCYQILHEYK---I--HNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKL 259 (317)
Q Consensus 192 DEPt~~LD~~~~~~~l~~l~---~--~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l 259 (317)
||||++||+.+...+++.+. . ..|+|++||+....+. ...|+|+.+.-++..+..+++
T Consensus 176 DEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~----------aDrI~vl~~G~iv~~Gt~~eL 238 (251)
T d1jj7a_ 176 DDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ----------ADHILFLEGGAIREGGTHQQL 238 (251)
T ss_dssp ESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT----------CSEEEEEETTEEEEEECHHHH
T ss_pred cCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEEEEECCHHHH
Confidence 99999999998766666553 2 2399999999654432 456888988876654444433
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=3.1e-27 Score=206.27 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=118.7
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++++.+.+|+++||+|+||||||||+++|+|+..| .+|.|.++|.++.-++... .+...+++.|
T Consensus 35 ~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p-----------~~G~I~i~g~~i~~~~~~~----lr~~i~~v~Q 99 (255)
T d2hyda1 35 KDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDV-----------TSGQILIDGHNIKDFLTGS----LRNQIGLVQQ 99 (255)
T ss_dssp EEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCC-----------SEEEEEETTEEGGGSCHHH----HHHTEEEECS
T ss_pred eceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCc-----------cccccccCCEEcccCCHHH----hhheeeeeec
Confidence 588999999999999999999999999999999988 8999999998764222111 1111122222
Q ss_pred HHhhhcc--CcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------
Q 021103 133 VIAVSKS--SDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS--------- 188 (317)
Q Consensus 133 ~~~~~~~--~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia--------- 188 (317)
....+.. .+++.+. . +....+.+.+.++..++ .+.....+|||||+||++||
T Consensus 100 ~~~lf~~Ti~eNi~~g---~-~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~i 175 (255)
T d2hyda1 100 DNILFSDTVKENILLG---R-PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPI 175 (255)
T ss_dssp SCCCCSSBHHHHHGGG---C-SSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSE
T ss_pred cccCCCCCHHHHHhcc---C-cCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 1111110 1111111 1 11122334445554443 23345668999999999999
Q ss_pred eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh
Q 021103 189 FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA 260 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~ 260 (317)
+++||||++||+.+...+++.+. ...|+|++||+...... ...|+|+++.-++..+..+++.
T Consensus 176 lilDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~----------~D~ii~l~~G~iv~~G~~~eLl 240 (255)
T d2hyda1 176 LILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH----------ADKIVVIENGHIVETGTHRELI 240 (255)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT----------CSEEEEEETTEEEEEECHHHHH
T ss_pred EEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHh----------CCEEEEEECCEEEEECCHHHHH
Confidence 99999999999998666666554 34599999999765443 4568888888776554444443
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=2.1e-27 Score=205.09 Aligned_cols=170 Identities=15% Similarity=0.147 Sum_probs=113.3
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ 132 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~ 132 (317)
.++|+++..|+++||+||||||||||+++|+|.. + .+|.|.++|.++.......+ ...
T Consensus 16 ~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~-----------~~G~I~~~g~~i~~~~~~~~----------~~~ 73 (231)
T d1l7vc_ 16 GPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-S-----------GKGSIQFAGQPLEAWSATKL----------ALH 73 (231)
T ss_dssp CSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-C-----------CSSEEEESSSBGGGSCHHHH----------HHH
T ss_pred cCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-C-----------CceEEEECCEECCcCCHHHH----------Hhh
Confidence 5789999999999999999999999999999965 4 57999999876421110000 000
Q ss_pred HHhhhccCc-----EEEEEec-CCCchhhHHHHHHHHHHccc--cccccCCcccccceeeeeeE----------------
Q 021103 133 VIAVSKSSD-----IVLMVLD-ASKSEGHRQILTKELEAVGL--RLNKRPPQIYFKKKKTGGIS---------------- 188 (317)
Q Consensus 133 ~~~~~~~~d-----~i~~v~~-~~~~~~~~~~~~~~L~~~~l--~~~~~~~~LS~g~~qr~~ia---------------- 188 (317)
.....+... .+...+. ........+.+.++++.+++ .+++++.+|||||+||+.+|
T Consensus 74 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 74 RAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp EEEECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred ceeeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence 000000000 0000000 01112234567788888888 78899999999999999766
Q ss_pred eeecCCCCCCCHHHHHH---HHHHhcccC-cEEEecCCCC-hhhHHHHHhcccceeeeeEEEecccCCChh
Q 021103 189 FNSTLPLTHVDEKLCYQ---ILHEYKIHN-AEVLFREDAT-VDDLIDVIEGNRKYMKCVYVYNKIDVIGID 254 (317)
Q Consensus 189 lilDEPt~~LD~~~~~~---~l~~l~~~~-~~i~~shd~~-~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~ 254 (317)
+++||||++||+..... +++.+...+ ++|++|||.+ +.++|| .++|++..-++..+
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~d----------ri~vl~~G~iv~~G 214 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAH----------RAWLLKGGKMLASG 214 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCS----------BCCBEETTEECCCS
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCC----------EEEEEECCEEEEEC
Confidence 68999999999987544 455555555 8999999943 455544 46677777665443
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.92 E-value=4.4e-27 Score=198.83 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=94.0
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEec-CCCcccccc---CCch
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLD-LPGIIEGAS---EGKG 128 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d-~~g~~~~~~---~~~~ 128 (317)
.++++.+++|+++||+||||||||||+++|+|...| .+|.|.++|.++.... ..++.++.. ....
T Consensus 18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p-----------~~G~I~~~g~~i~~~~~~i~~~~~~~~~~~~~t 86 (200)
T d1sgwa_ 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP-----------LKGEIIYNGVPITKVKGKIFFLPEEIIVPRKIS 86 (200)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCC-----------SEEEEEETTEEGGGGGGGEEEECSSCCCCTTSB
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhccccc-----------CCCEEEECCEehhHhcCcEEEEeecccCCCCcC
Confidence 578899999999999999999999999999999998 8999999998753110 000100000 0000
Q ss_pred hHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-cccccCCcccccceeeeeeE---------eeecCCCCCC
Q 021103 129 RGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-RLNKRPPQIYFKKKKTGGIS---------FNSTLPLTHV 198 (317)
Q Consensus 129 ~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-~~~~~~~~LS~g~~qr~~ia---------lilDEPt~~L 198 (317)
..+.... .............+.+.++.+++ ...+++.+|||||+||+.+| +++||||++|
T Consensus 87 -~~~~l~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 87 -VEDYLKA---------VASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp -HHHHHHH---------HHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred -HHHHHHH---------HHHhcCCccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 0111110 00111111223456677888887 56788999999999999998 9999999999
Q ss_pred CHHHHHHHHHHh
Q 021103 199 DEKLCYQILHEY 210 (317)
Q Consensus 199 D~~~~~~~l~~l 210 (317)
|+.....+++.+
T Consensus 157 D~~~~~~i~~~l 168 (200)
T d1sgwa_ 157 DEDSKHKVLKSI 168 (200)
T ss_dssp CTTTHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 998765555444
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.89 E-value=6.5e-24 Score=187.94 Aligned_cols=161 Identities=14% Similarity=0.128 Sum_probs=108.4
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCC-CccccccCCchhHH
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLP-GIIEGASEGKGRGR 131 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~-g~~~~~~~~~~~~~ 131 (317)
.++++.+.+|+++||+||||||||||+++|+|...| .+|.|.++|+ +.++..- .+.+ +...
T Consensus 53 ~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p-----------~~G~I~~~g~-i~~v~Q~~~l~~------~tv~ 114 (281)
T d1r0wa_ 53 KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEA-----------SEGIIKHSGR-VSFCSQFSWIMP------GTIK 114 (281)
T ss_dssp EEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC-----------SEEEEECCSC-EEEECSSCCCCS------EEHH
T ss_pred eCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcC-----------CCcEEEECCE-EEEEeccccccC------ceee
Confidence 588999999999999999999999999999999988 8999999884 4333211 1111 0011
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccc-------------cccccCCcccccceeeeeeE---------e
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGL-------------RLNKRPPQIYFKKKKTGGIS---------F 189 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l-------------~~~~~~~~LS~g~~qr~~ia---------l 189 (317)
+.+ .+... . .. ......++...+ .+.....+|||||+||++|| +
T Consensus 115 eni---------~~~~~-~-~~---~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~il 180 (281)
T d1r0wa_ 115 ENI---------IFGVS-Y-DE---YRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLY 180 (281)
T ss_dssp HHH---------TTTSC-C-CH---HHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEE
T ss_pred ccc---------ccccc-c-cc---hHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccch
Confidence 111 00000 0 11 111122221111 23455678999999999999 9
Q ss_pred eecCCCCCCCHHHHHHHHHHhc----ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh
Q 021103 190 NSTLPLTHVDEKLCYQILHEYK----IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD 255 (317)
Q Consensus 190 ilDEPt~~LD~~~~~~~l~~l~----~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~ 255 (317)
++||||++||+.....+++.+. ...++|++||+....+. ...|+|+++.-++..+.
T Consensus 181 lLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~----------aDrI~vl~~G~i~~~Gt 240 (281)
T d1r0wa_ 181 LLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRK----------ADKILILHQGSSYFYGT 240 (281)
T ss_dssp EEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHT----------CSEEEEEETTEEEEEEC
T ss_pred hhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHh----------CCEEEEEECCEEEEECC
Confidence 9999999999998888877542 22499999999643332 45688998887764443
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=99.86 E-value=2.9e-21 Score=159.92 Aligned_cols=160 Identities=32% Similarity=0.465 Sum_probs=118.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.|||+|++|||||||+|+|+|....+++++++|+.+..|.... .+..+.++||||+............+....+..+++
T Consensus 3 ~VaivG~~nvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRV 82 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhh
Confidence 4999999999999999999999887888889988888876665 456799999999977655555555667777888999
Q ss_pred EEEEecCCCchh-hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 143 VLMVLDASKSEG-HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 143 i~~v~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
++++++...... ........+...
T Consensus 83 ~~~~~d~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 107 (180)
T d1udxa2 83 LLYVLDAADEPLKTLETLRKEVGAY------------------------------------------------------- 107 (180)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHH-------------------------------------------------------
T ss_pred hhhhcccccccccchhhhhhhhhcc-------------------------------------------------------
Confidence 999888654321 111111111110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHh-----cCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLA-----RQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~-----~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
......+|+++|+||+|+...++.+.+. ...+++++||++|+|+++|.+.|.+.+..
T Consensus 108 -----------~~~~~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~ 169 (180)
T d1udxa2 108 -----------DPALLRRPSLVALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS 169 (180)
T ss_dssp -----------CHHHHHSCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred -----------ccccchhhhhhhhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 0001247999999999999876654332 24568999999999999999999998864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.85 E-value=1.2e-21 Score=162.90 Aligned_cols=163 Identities=30% Similarity=0.419 Sum_probs=115.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-CCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-NDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.|||+|++|||||||+|+|+|....+++++++|+++..|...+ ++..+.++||||+............++...+..++.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~ 82 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRV 82 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCceecCCCceEeeeeceeEecCCcEEEEecCCCcccCchHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999888899999999999988876 457899999999876555555555666666777888
Q ss_pred EEEEecCCCchh--hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 143 VLMVLDASKSEG--HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 143 i~~v~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++...... ......... .....
T Consensus 83 i~~~v~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~----------- 110 (185)
T d1lnza2 83 IVHVIDMSGLEGRDPYDDYLTIN-----------------------------------------QELSE----------- 110 (185)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHH-----------------------------------------HHHHH-----------
T ss_pred hhheeeecccccchhhhhhhhhh-----------------------------------------hccch-----------
Confidence 877765432211 000000000 00000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh-HHHH----hcCCCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-VDKL----ARQPNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-~~~l----~~~~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.......+|+++|+||+|+..... .+.+ ....+++++||++|.|+++|++.|.+.+..
T Consensus 111 -----------~~~~~~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~ 173 (185)
T d1lnza2 111 -----------YNLRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN 173 (185)
T ss_dssp -----------SCSSTTTSCBCBEEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred -----------hhhhccCCcchhhccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 000112479999999999986543 2322 224567899999999999999999998864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.6e-20 Score=153.91 Aligned_cols=156 Identities=22% Similarity=0.269 Sum_probs=114.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchh-HHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGR-GRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~d 141 (317)
+|+|+|.+|||||||+|+|+|... .++++++||.+...+.....+.++.++||||+.......... .......+..+|
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad 86 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVN 86 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeecccCCcccccccceeeeeeeeeeecccccccccccccchhccccccccccccc
Confidence 799999999999999999999874 478999999999999999999999999999986533222111 223344567899
Q ss_pred EEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 142 IVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++|+....... ..+.+.+..
T Consensus 87 ~il~v~D~~~~~~~~~~~i~~~l~~------------------------------------------------------- 111 (178)
T d1wf3a1 87 AVVWVVDLRHPPTPEDELVARALKP------------------------------------------------------- 111 (178)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHHGG-------------------------------------------------------
T ss_pred ceeeeechhhhhcccccchhhheec-------------------------------------------------------
Confidence 999999986543221 111111111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHHhc---CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKLAR---QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l~~---~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.....|+++|+||+|+....+ .+.+.+ ...++++||+++.|+++|.+.|.+.++
T Consensus 112 --------------~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp 170 (178)
T d1wf3a1 112 --------------LVGKVPILLVGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP 170 (178)
T ss_dssp --------------GTTTSCEEEEEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred --------------cccchhhhhhhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence 112479999999999976432 232222 345788999999999999999998875
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=99.84 E-value=5e-21 Score=155.27 Aligned_cols=157 Identities=20% Similarity=0.245 Sum_probs=112.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch-hHHHHHhhhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG-RGRQVIAVSKS 139 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~-~~~~~~~~~~~ 139 (317)
|-+|+|+|++|||||||+|+|+|.... ++++|++|++...+.+.+.+.++..+|+||+.+....... ...........
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIEQ 80 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccccceEeeeeeccCceeeeccccccccccccchhHHHHHHHHHHHh
Confidence 468999999999999999999998765 7889999999999999999999999999998754322211 12223345677
Q ss_pred CcEEEEEecCCCchh--hHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEE
Q 021103 140 SDIVLMVLDASKSEG--HRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEV 217 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i 217 (317)
+|+++++++...... ......+.+ ..
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~--------------------------------------------~~-------- 108 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFI--------------------------------------------AR-------- 108 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHH--------------------------------------------HH--------
T ss_pred ccccceeeccccccchhhhhhhhhhh--------------------------------------------hh--------
Confidence 999999888754321 111111111 11
Q ss_pred EecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHHHhcCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 218 LFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDKLARQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 218 ~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~l~~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.....|+++|+||+|+...+....-....+++++||+++.|+++|.+.|.+.|
T Consensus 109 -----------------~~~~~~iilv~NK~Dl~~~~~~~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l 161 (161)
T d2gj8a1 109 -----------------LPAKLPITVVRNKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSM 161 (161)
T ss_dssp -----------------SCTTCCEEEEEECHHHHCCCCEEEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred -----------------cccccceeeccchhhhhhhHHHHHHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence 11247999999999987543221112234689999999999999999998764
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.82 E-value=8.9e-20 Score=149.57 Aligned_cols=155 Identities=20% Similarity=0.319 Sum_probs=102.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~~~~~~~~ 139 (317)
..|+|+|++|||||||+|.|+|.... +++++++|+....+.+...+..+...|++|+......... ........+..
T Consensus 1 a~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 80 (171)
T d1mkya1 1 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 80 (171)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeecccccccccccccccccc
Confidence 36999999999999999999998764 8999999999999999999999999999998654433222 22334445678
Q ss_pred CcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEE
Q 021103 140 SDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVL 218 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~ 218 (317)
+|+++++.+........ ..+...+.
T Consensus 81 ad~i~~~~~~~~~~~~~~~~~~~~l~------------------------------------------------------ 106 (171)
T d1mkya1 81 ADLVLFVVDGKRGITKEDESLADFLR------------------------------------------------------ 106 (171)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHH------------------------------------------------------
T ss_pred CcEEEEeecccccccccccccccccc------------------------------------------------------
Confidence 99998888765432211 11111111
Q ss_pred ecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHh--cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 219 FREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLA--RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 219 ~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
...+|+++|+||+|+......+ .+. ....++++||++|.|+++|.+.|.+.++
T Consensus 107 -----------------~~~~pviiv~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~ 164 (171)
T d1mkya1 107 -----------------KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLE 164 (171)
T ss_dssp -----------------HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHH
T ss_pred -----------------cccccccccchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCC
Confidence 1147999999999997543322 222 3456899999999999999999988764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.81 E-value=9.6e-20 Score=147.40 Aligned_cols=150 Identities=28% Similarity=0.330 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--hHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--RGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--~~~~~~~~~~~~ 140 (317)
+|+|+|++|||||||+|+|+|... .++++|++|+.+..+.+.+.+..+.++||||+......... ........+..+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~a 81 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKA 81 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHHHHHhC
Confidence 699999999999999999999875 48899999999999999999999999999998654332211 123455567789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|++++++|+..+...... . +...
T Consensus 82 d~ii~v~d~~~~~~~~~~--~--------------------------------------------~~~~----------- 104 (160)
T d1xzpa2 82 DIVLFVLDASSPLDEEDR--K--------------------------------------------ILER----------- 104 (160)
T ss_dssp SEEEEEEETTSCCCHHHH--H--------------------------------------------HHHH-----------
T ss_pred CEEEEEEeCCCCcchhhh--h--------------------------------------------hhhh-----------
Confidence 999999998754322110 0 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHhcCCCeEEEeccccccHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLARQPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~~~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
....+.++++||+|+......+ .+....+++++||++|.|+++|.+.|.+
T Consensus 105 ---------------~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I~k 158 (160)
T d1xzpa2 105 ---------------IKNKRYLVVINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYR 158 (160)
T ss_dssp ---------------HTTSSEEEEEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHH
T ss_pred ---------------cccccceeeeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 0135788999999998654333 3344567999999999999999999875
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=1.5e-19 Score=149.43 Aligned_cols=162 Identities=22% Similarity=0.266 Sum_probs=101.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch--------hHHHHHh
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG--------RGRQVIA 135 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~--------~~~~~~~ 135 (317)
.|+|+|+||||||||+|+|+|....++++||||++... +.+. ++.++||||+......... .......
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~~~~~~~~g~T~~~~~--~~~~--~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK--NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED 77 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET--TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCEeecccc--cccc--cceecccCCceeccccccccccccchhhhhhhhh
Confidence 68999999999999999999988889999999998643 3443 4567899997422111110 0111223
Q ss_pred hhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCc
Q 021103 136 VSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNA 215 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~ 215 (317)
..+.+|++++++|+........ ... ..++ ...|.+
T Consensus 78 ~~~~~d~~~~vvD~~~~~~~~~---~~~-~~~~---------------------------~~~d~~-------------- 112 (184)
T d2cxxa1 78 NAKNIDVAVLVVDGKAAPEIIK---RWE-KRGE---------------------------IPIDVE-------------- 112 (184)
T ss_dssp HGGGCCEEEEEEETTHHHHHHH---HHH-HTTC---------------------------CCHHHH--------------
T ss_pred cccccchheeeeeccccchhhh---hhh-hccc---------------------------cHHHHH--------------
Confidence 4567899999998753221110 000 0000 000111
Q ss_pred EEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh--HHHHh---c------CCCeEEEeccccccHHHHHHHHH
Q 021103 216 EVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD--VDKLA---R------QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 216 ~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~--~~~l~---~------~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
+.+.+.. ...|+++|+||+|+....+ ...+. . ....+++||++|+|+++|.+.|.
T Consensus 113 ------------~~~~l~~--~~~p~iiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~ 178 (184)
T d2cxxa1 113 ------------FYQFLRE--LDIPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIF 178 (184)
T ss_dssp ------------HHHHHHH--TTCCEEEEEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHH
T ss_pred ------------HHHHHHH--cCCCEEEEEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHH
Confidence 1111111 2579999999999875422 11111 1 12378899999999999999999
Q ss_pred HHhC
Q 021103 285 EEMG 288 (317)
Q Consensus 285 ~~l~ 288 (317)
+.++
T Consensus 179 ~~l~ 182 (184)
T d2cxxa1 179 EVIR 182 (184)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 8774
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=2.1e-18 Score=142.89 Aligned_cols=156 Identities=23% Similarity=0.300 Sum_probs=105.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccC-----CchhHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE-----GKGRGRQVIA 135 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~-----~~~~~~~~~~ 135 (317)
.-+|||+|++|+|||||+|+|+|... +++++++||+....+.+.++|.++..+|+||+...... ..........
T Consensus 8 ~~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 87 (186)
T d1mkya2 8 AIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVD 87 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHHHH
Confidence 46899999999999999999999875 58999999999999999999999999999998532211 1111234445
Q ss_pred hhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 136 VSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
.+..+|++++++++....... ..+...++
T Consensus 88 ~~~~~dvii~v~d~~~~~~~~~~~~~~~~~-------------------------------------------------- 117 (186)
T d1mkya2 88 SIEKADVVVIVLDATQGITRQDQRMAGLME-------------------------------------------------- 117 (186)
T ss_dssp HHHHCSEEEEEEETTTCCCHHHHHHHHHHH--------------------------------------------------
T ss_pred HHhcCCEEEEeecccccchhhHHHHHHHHH--------------------------------------------------
Confidence 567899999999876442211 11111111
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhh-----HH-HH------hcCCCeEEEeccccccHHHHHHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD-----VD-KL------ARQPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~-----~~-~l------~~~~~~v~iSa~~~~~i~~l~~~ 282 (317)
....|.|+|+||+|+..... +. .+ ..+.+++++||++|.|+++|.+.
T Consensus 118 ---------------------~~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~ 176 (186)
T d1mkya2 118 ---------------------RRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDA 176 (186)
T ss_dssp ---------------------HTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHH
T ss_pred ---------------------HcCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHH
Confidence 12479999999999875432 11 11 12457899999999999999999
Q ss_pred HHHHhC
Q 021103 283 MWEEMG 288 (317)
Q Consensus 283 i~~~l~ 288 (317)
|.+.+.
T Consensus 177 i~~~~~ 182 (186)
T d1mkya2 177 MNLAYA 182 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987664
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.78 E-value=8.5e-19 Score=156.48 Aligned_cols=89 Identities=26% Similarity=0.479 Sum_probs=81.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECC-----------------eeEEEecCCCccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYND-----------------TKIQLLDLPGIIEGA 123 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g-----------------~~i~~~d~~g~~~~~ 123 (317)
+.++||||.||||||||||+||+... .+++|||||++|..|.+.+.+ .++.++|.||+.+..
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv~gA 89 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGA 89 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeecccccccc
Confidence 46899999999999999999999875 489999999999999998765 468899999999999
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCC
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
..+.+.+.+++..++.+|++++++++.
T Consensus 90 ~~g~GLGn~fL~~ir~~d~lihVV~~f 116 (296)
T d1ni3a1 90 STGVGLGNAFLSHVRAVDAIYQVVRAF 116 (296)
T ss_dssp CSSSSSCHHHHHHHTTCSEEEEEEECC
T ss_pred ccccccHHHHHHHhhccceeEEEEecc
Confidence 999999999999999999999999864
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=1.5e-19 Score=163.12 Aligned_cols=87 Identities=30% Similarity=0.544 Sum_probs=51.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE------------------------CCeeEEEecCCCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY------------------------NDTKIQLLDLPGI 119 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~------------------------~g~~i~~~d~~g~ 119 (317)
.|||||.||||||||||+|+|....+++|||||++|..|.+.. .+.++.++|+||+
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~pGl 81 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGL 81 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCCCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEECCCc
Confidence 5999999999999999999999888999999999999997651 2246899999999
Q ss_pred cccccCCchhHHHHHhhhccCcEEEEEecCC
Q 021103 120 IEGASEGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+....+.+.+.+++..++.+|++++++|+.
T Consensus 82 i~ga~~g~~~~~~~l~~i~~~d~ii~VVd~~ 112 (319)
T d1wxqa1 82 VPGAHEGRGLGNKFLDDLRMASALIHVVDAT 112 (319)
T ss_dssp -------------CCCSSTTCSEEEEEEETT
T ss_pred ccchhcccchHHHHHHhhccceEEEEEeccc
Confidence 9888888888888888999999999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.75 E-value=6e-18 Score=139.81 Aligned_cols=149 Identities=21% Similarity=0.266 Sum_probs=96.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CC------ccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AA------SYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA 135 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~------~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~ 135 (317)
-.|||+|++|||||||+|+|++.... .. ...+.|.+.....+.+++..+.++|+||..+ +......
T Consensus 6 inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~-------~~~~~~~ 78 (179)
T d1wb1a4 6 INLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHAD-------LIRAVVS 78 (179)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHH-------HHHHHHH
T ss_pred EEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccc-------cccchhh
Confidence 36999999999999999999986432 11 1223444444455667788888899887532 1233445
Q ss_pred hhccCcEEEEEecCCCchhhH-HHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccC
Q 021103 136 VSKSSDIVLMVLDASKSEGHR-QILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHN 214 (317)
Q Consensus 136 ~~~~~d~i~~v~~~~~~~~~~-~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~ 214 (317)
.+..+|.+++++++....... ..+...+.
T Consensus 79 ~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~-------------------------------------------------- 108 (179)
T d1wb1a4 79 AADIIDLALIVVDAKEGPKTQTGEHMLILD-------------------------------------------------- 108 (179)
T ss_dssp HTTSCCEEEEEEETTTCSCHHHHHHHHHHH--------------------------------------------------
T ss_pred hhhhccccccccccccccchhhhhhhhhhh--------------------------------------------------
Confidence 667789999998876542211 11111111
Q ss_pred cEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------HHh------cCCCeEEEeccccccHHHHHH
Q 021103 215 AEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLA------RQPNSVVISCNLKLNLDRLLA 281 (317)
Q Consensus 215 ~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~l~------~~~~~v~iSa~~~~~i~~l~~ 281 (317)
....|+++|+||+|+...+..+ .+. ...+++++||++|+|+++|.+
T Consensus 109 ---------------------~~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~ 167 (179)
T d1wb1a4 109 ---------------------HFNIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKN 167 (179)
T ss_dssp ---------------------HTTCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHH
T ss_pred ---------------------hcCCcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHH
Confidence 1147999999999999765432 111 124789999999999999999
Q ss_pred HHHHHhCe
Q 021103 282 RMWEEMGL 289 (317)
Q Consensus 282 ~i~~~l~~ 289 (317)
.|.+.++.
T Consensus 168 ~I~~~l~~ 175 (179)
T d1wb1a4 168 LIITTLNN 175 (179)
T ss_dssp HHHHHHHH
T ss_pred HHHhcCCc
Confidence 99988754
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=99.70 E-value=1e-16 Score=133.83 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=90.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC--CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCch------hHHHHH
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS--EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKG------RGRQVI 134 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~--~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~------~~~~~~ 134 (317)
.+|+|+|++|||||||+|+|+|... .++.++++|.+...+.+. ..+.++|++++......... ......
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIN---DELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEET---TTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeeccccccc---ccceEEEEEeeccccccccccchhhhHHhhhh
Confidence 4799999999999999999999763 578889999887665443 34456677665322111111 011222
Q ss_pred hhhccCcEEEEEecCCCchhh-HHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhccc
Q 021103 135 AVSKSSDIVLMVLDASKSEGH-RQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIH 213 (317)
Q Consensus 135 ~~~~~~d~i~~v~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~ 213 (317)
.....++.+++++|+..+... ...+.+.+.
T Consensus 101 ~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~------------------------------------------------- 131 (195)
T d1svia_ 101 TTREELKAVVQIVDLRHAPSNDDVQMYEFLK------------------------------------------------- 131 (195)
T ss_dssp HHCTTEEEEEEEEETTSCCCHHHHHHHHHHH-------------------------------------------------
T ss_pred ccccchhhhhhhhhccccccccccccccccc-------------------------------------------------
Confidence 334456888888887543221 111111111
Q ss_pred CcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHHH----Hh------cCCCeEEEeccccccHHHHHHHH
Q 021103 214 NAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVDK----LA------RQPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 214 ~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~~----l~------~~~~~v~iSa~~~~~i~~l~~~i 283 (317)
...+|+++|+||+|+...++.+. +. ....++++||.+|+|+++|++.|
T Consensus 132 ----------------------~~~~piivv~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i 189 (195)
T d1svia_ 132 ----------------------YYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAI 189 (195)
T ss_dssp ----------------------HTTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHH
T ss_pred ----------------------cccCcceechhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHH
Confidence 11479999999999986654332 11 12457899999999999999999
Q ss_pred HHHhC
Q 021103 284 WEEMG 288 (317)
Q Consensus 284 ~~~l~ 288 (317)
.+.+.
T Consensus 190 ~~~l~ 194 (195)
T d1svia_ 190 KKMIN 194 (195)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 88764
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=8.5e-18 Score=148.59 Aligned_cols=89 Identities=33% Similarity=0.579 Sum_probs=75.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe-----------------eEEEecCCCcccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT-----------------KIQLLDLPGIIEGAS 124 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~-----------------~i~~~d~~g~~~~~~ 124 (317)
+-++||||.||||||||||+||+..+.+++|||||.+|.-|.+.+.+. .+.++|.||+.+.++
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~ga~ 81 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCCcc
Confidence 358999999999999999999999888999999999999999987642 578999999999999
Q ss_pred CCchhHHHHHhhhccCcEEEEEecCC
Q 021103 125 EGKGRGRQVIAVSKSSDIVLMVLDAS 150 (317)
Q Consensus 125 ~~~~~~~~~~~~~~~~d~i~~v~~~~ 150 (317)
.+.+.+.+++..++.+|++++|+|+.
T Consensus 82 ~g~Glg~~FL~~ir~~d~LihVVr~f 107 (278)
T d1jala1 82 KGEGLGNKFLANIRETDAIGHVVRCF 107 (278)
T ss_dssp HHGGGTCCHHHHHHTCSEEEEEEECS
T ss_pred cCCCccHHHHHHHHhccceEEEeecc
Confidence 99999999999999999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=3.8e-16 Score=128.05 Aligned_cols=154 Identities=24% Similarity=0.293 Sum_probs=100.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHH--HHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQ--VIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~--~~~~~~~~ 140 (317)
+|+|+|.+|+|||||+|+|+|.... +++.++||+....+....+...+..+|++|.............. .......+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDV 86 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeccCCCceEEEEEeeeecCCceeEeecCCCceecchhhhhhhhhhccccchhhc
Confidence 6999999999999999999998754 66677777777888888888888888888865432111110000 00112345
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
++++++.+..........+...+
T Consensus 87 ~~~l~~~d~~~~~~~~~~~~~~l--------------------------------------------------------- 109 (179)
T d1egaa1 87 ELVIFVVEGTRWTPDDEMVLNKL--------------------------------------------------------- 109 (179)
T ss_dssp EEEEEEEETTCCCHHHHHHHHHH---------------------------------------------------------
T ss_pred ceeEEEEecCccchhHHHHHHHh---------------------------------------------------------
Confidence 66666666543322211111111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh-hHH----HHh---cCCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-DVD----KLA---RQPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-~~~----~l~---~~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
. ....|.++|+||+|..... .+. .+. ...+++++||++|+|+++|.+.|.+.|+
T Consensus 110 ------------~--~~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp 171 (179)
T d1egaa1 110 ------------R--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP 171 (179)
T ss_dssp ------------H--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred ------------h--hccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence 0 1246889999999987542 221 122 2346899999999999999999999874
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.64 E-value=2.8e-16 Score=134.56 Aligned_cols=84 Identities=18% Similarity=0.179 Sum_probs=54.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEE------------------EEECCeeEEEecCCCccccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGI------------------IHYNDTKIQLLDLPGIIEGA 123 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~------------------i~~~g~~i~~~d~~g~~~~~ 123 (317)
..+|||+|.+|||||||+|+|++.........++|....... +.+++..+.++||||..+..
T Consensus 5 ~p~IaIiGh~d~GKSTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~f~ 84 (227)
T d1g7sa4 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFT 84 (227)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCT
T ss_pred CCEEEEEeCCCccHHHHHHHHHhhcchheecCceeeeccccccccccccccccccccceeecccccccccccccceeccc
Confidence 357999999999999999999986543333333433322221 22356678999999963321
Q ss_pred cCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 124 SEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 124 ~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
......+..+|++++++|+...
T Consensus 85 -------~~~~~~~~~~D~~ilVvda~~g 106 (227)
T d1g7sa4 85 -------TLRKRGGALADLAILIVDINEG 106 (227)
T ss_dssp -------TSBCSSSBSCSEEEEEEETTTC
T ss_pred -------ccchhcccccceEEEEEecccC
Confidence 1222345679999999998653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=99.59 E-value=4.4e-15 Score=123.90 Aligned_cols=151 Identities=18% Similarity=0.181 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEE-----------------------CCeeEEEecC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHY-----------------------NDTKIQLLDL 116 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~-----------------------~g~~i~~~d~ 116 (317)
-.||++|..++|||||+|+|+|.... .....+.|.+.......+ ++..+.++|+
T Consensus 6 inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDt 85 (195)
T d1kk1a3 6 VNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDA 85 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEEC
T ss_pred EEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeecc
Confidence 36899999999999999999986532 222344454432222111 1245788999
Q ss_pred CCccccccCCchhHHHHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCC
Q 021103 117 PGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLT 196 (317)
Q Consensus 117 ~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~ 196 (317)
||..+ +.......+..+|..++++++........ ..+.+
T Consensus 86 PGh~~-------f~~~~~~~~~~~d~~ilvvda~~g~~~~~-t~e~~--------------------------------- 124 (195)
T d1kk1a3 86 PGHEA-------LMTTMLAGASLMDGAILVIAANEPCPRPQ-TREHL--------------------------------- 124 (195)
T ss_dssp SSHHH-------HHHHHHHCGGGCSEEEEEEETTSCSSCHH-HHHHH---------------------------------
T ss_pred chhhh-------hhHHhhcccccccccccccchhhhhhhhh-hHHHH---------------------------------
Confidence 98532 22344455677999999998765321111 11110
Q ss_pred CCCHHHHHHHHHHhcccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH-------HHhc-----CCC
Q 021103 197 HVDEKLCYQILHEYKIHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD-------KLAR-----QPN 264 (317)
Q Consensus 197 ~LD~~~~~~~l~~l~~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~-------~l~~-----~~~ 264 (317)
.++..+ ...++++++||+|+.+..... .+.. ..+
T Consensus 125 --------~~~~~~--------------------------~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~ 170 (195)
T d1kk1a3 125 --------MALQII--------------------------GQKNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAP 170 (195)
T ss_dssp --------HHHHHH--------------------------TCCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCC
T ss_pred --------HHHHHh--------------------------cCccceeeeecccchhhHHHHHHHHHHHHHhccccCCCCe
Confidence 011111 124578889999998764321 1111 135
Q ss_pred eEEEeccccccHHHHHHHHHHHhC
Q 021103 265 SVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 265 ~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
++++||++|.|+++|++.|.+.++
T Consensus 171 iIpiSA~~G~ni~~Ll~~I~~~iP 194 (195)
T d1kk1a3 171 IIPISALHGANIDVLVKAIEDFIP 194 (195)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHCc
Confidence 799999999999999999998765
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=99.58 E-value=2.4e-14 Score=115.73 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=97.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+|+++|++|||||||++.|.+.... ....|.......+..++..+.++|++|..... ......+..++.
T Consensus 3 ~ki~ivG~~~~GKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~-------~~~~~~~~~~~~ 72 (165)
T d1ksha_ 3 LRLLMLGLDNAGKTTILKKFNGEDVD---TISPTLGFNIKTLEHRGFKLNIWDVGGQKSLR-------SYWRNYFESTDG 72 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCCCS---SCCCCSSEEEEEEEETTEEEEEEEECCSHHHH-------TTGGGGCTTCSE
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCC---cccceEeeeeeeccccccceeeeecCcchhhh-------hHHHhhhhhhhc
Confidence 47999999999999999999986532 34456666777788899999999999843210 112234567899
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
+++++|..+...... +...+.. .+.
T Consensus 73 ~i~v~d~~d~~~~~~-~~~~~~~-------------------------------------------~~~----------- 97 (165)
T d1ksha_ 73 LIWVVDSADRQRMQD-CQRELQS-------------------------------------------LLV----------- 97 (165)
T ss_dssp EEEEEETTCGGGHHH-HHHHHHH-------------------------------------------HHT-----------
T ss_pred ceeeeecccchhHHH-HHHhhhh-------------------------------------------hhh-----------
Confidence 999998765432211 1111110 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHHH---hc--C--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDKL---AR--Q--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~l---~~--~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|.||.|+... ++.... .. . ..++.+||++|.|++++.+.|.+.+
T Consensus 98 ----------~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i 162 (165)
T d1ksha_ 98 ----------EERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI 162 (165)
T ss_dssp ----------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hcccCCCceEEEEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 000124799999999999743 222211 11 1 1367799999999999999987654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=99.55 E-value=9.7e-14 Score=113.18 Aligned_cols=148 Identities=17% Similarity=0.159 Sum_probs=93.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
-+|+++|++|||||||+|.+.+.... +.+..+ .....+.+.+..+.+.|++|.... .......+..+|
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~----~~~~~i~~~~~~~~i~d~~g~~~~-------~~~~~~~~~~~~ 85 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQG----FNIKSVQSQGFKLNVWDIGGQRKI-------RPYWRSYFENTD 85 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETT----EEEEEEEETTEEEEEEECSSCGGG-------HHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcceeeee----eeEEEeccCCeeEeEeeccccccc-------hhHHHHHhhccc
Confidence 47999999999999999999876532 222222 234456777888999998874321 112234567899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..+..... .+...+..+. .
T Consensus 86 ~ii~v~d~~d~~s~~-~~~~~~~~~~-------------------------------------------~---------- 111 (176)
T d1fzqa_ 86 ILIYVIDSADRKRFE-ETGQELTELL-------------------------------------------E---------- 111 (176)
T ss_dssp EEEEEEETTCGGGHH-HHHHHHHHHT-------------------------------------------T----------
T ss_pred eeEEeeccccccchh-hhhhhhhhhh-------------------------------------------h----------
Confidence 999999976543221 1211111100 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChhhHH----HHh----c--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD----KLA----R--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~----~l~----~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......|+++|.||+|+....... .+. . ....+.+||++|.|++++.+.|.+.
T Consensus 112 -----------~~~~~~~pillv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~ 175 (176)
T d1fzqa_ 112 -----------EEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN 175 (176)
T ss_dssp -----------CGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred -----------hhccCCCeEEEEEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence 0011247999999999997543222 111 1 1236778999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=99.54 E-value=7.4e-14 Score=113.86 Aligned_cols=150 Identities=16% Similarity=0.153 Sum_probs=98.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-+|+++|++|||||||++.+++...+ .+.+|...........+..+.+.|+||..... ......+..++.
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~-------~~~~~~~~~~~~ 82 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQSV---TTIPTVGFNVETVTYKNVKFNVWDVGGQDKIR-------PLWRHYYTGTQG 82 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCCCE---EEEEETTEEEEEEEETTEEEEEEEESCCGGGH-------HHHGGGTTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC---CccceeeeeEEEeeccceeeEEecCCCcchhh-------hHHHhhhcccce
Confidence 47999999999999999999865432 34456666666777788899999999864321 123345678999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
++++.|....... ..+...+... +.
T Consensus 83 ii~v~D~s~~~~~-~~~~~~l~~~-------------------------------------------~~----------- 107 (173)
T d1e0sa_ 83 LIFVVDCADRDRI-DEARQELHRI-------------------------------------------IN----------- 107 (173)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH-------------------------------------------HT-----------
T ss_pred EEEEEecccchhH-HHHHHHHHHH-------------------------------------------hh-----------
Confidence 9999998654322 1122222110 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChh---hHHH---HhcC--C--CeEEEeccccccHHHHHHHHHHHh
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID---DVDK---LARQ--P--NSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~---~~~~---l~~~--~--~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|.||+|+.... ++.. +... . .++.+||++|+|++++.+.|.+.+
T Consensus 108 ----------~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~ 172 (173)
T d1e0sa_ 108 ----------DREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY 172 (173)
T ss_dssp ----------SGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ----------hcccccceeeeeeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence 0011247999999999997432 2221 1111 1 256789999999999999998754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.53 E-value=1.1e-13 Score=116.25 Aligned_cols=50 Identities=22% Similarity=0.311 Sum_probs=38.1
Q ss_pred eeeeEEEecccCCChhhHHH----H----hc----CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 239 MKCVYVYNKIDVIGIDDVDK----L----AR----QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 239 ~p~i~v~NK~D~~~~~~~~~----l----~~----~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.|+|+++||+|+....+... + .. ..+++++||++|.|+++|++.|.+.++
T Consensus 141 ~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip 202 (205)
T d2qn6a3 141 KNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK 202 (205)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred ceeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence 57888999999987653221 1 11 235799999999999999999988754
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=99.51 E-value=1.7e-13 Score=110.70 Aligned_cols=150 Identities=19% Similarity=0.249 Sum_probs=96.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-+|+++|++|||||||++.+.+.... .++ ..|.......+..++..+.++|+||-.... ......+..++.
T Consensus 3 ~ki~i~G~~~~GKTsLl~~l~~~~~~-~~~-~~T~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~~ 73 (164)
T d1zd9a1 3 MELTLVGLQYSGKTTFVNVIASGQFN-EDM-IPTVGFNMRKITKGNVTIKLWDIGGQPRFR-------SMWERYCRGVSA 73 (164)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCC-CSC-CCCCSEEEEEEEETTEEEEEEEECCSHHHH-------TTHHHHHTTCSE
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCC-Ccc-cccceeeeeeeeeeeEEEEEeecccccccc-------ccccccccccch
Confidence 47999999999999999999876533 222 235666666778888899999999842211 112234578999
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
++++.+......- ..+...+..+ ++.
T Consensus 74 ~i~v~d~~~~~~~-~~~~~~~~~~----------------------------------------~~~------------- 99 (164)
T d1zd9a1 74 IVYMVDAADQEKI-EASKNELHNL----------------------------------------LDK------------- 99 (164)
T ss_dssp EEEEEETTCGGGH-HHHHHHHHHH----------------------------------------HTC-------------
T ss_pred hhccccccccccc-chhhhhhhhh----------------------------------------hhh-------------
Confidence 9999987654221 1111111110 000
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCCh---hhHH-HHh----c--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVD-KLA----R--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~-~l~----~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
......|+++|.||.|+... .++. .+. + ....+.+||.+|.|++++.+.|.+.
T Consensus 100 -----------~~~~~~pi~lv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~ 162 (164)
T d1zd9a1 100 -----------PQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH 162 (164)
T ss_dssp -----------GGGTTCCEEEEEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred -----------hcccCCcEEEEEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence 00124799999999998743 2222 211 1 1246789999999999999988774
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=99.51 E-value=1.1e-13 Score=113.43 Aligned_cols=57 Identities=25% Similarity=0.110 Sum_probs=33.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPG 118 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g 118 (317)
..+|+|+|++|||||||+|+|++.... .....++|...........+......+.++
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYG 73 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeeccc
Confidence 568999999999999999999998754 344445555554444455555554444443
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.50 E-value=1.3e-13 Score=119.97 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=65.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHh--hhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIA--VSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~--~~~~ 139 (317)
-+|+|+|.+|||||||+|+|+|... .+++.++||+++..+...++|.++.++||||+.+.............. ....
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~ 112 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKT 112 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCE
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcchHHHHHHHHHHHHhcCC
Confidence 4799999999999999999999875 478899999999999999999999999999997643322211111111 1223
Q ss_pred CcEEEEEecCC
Q 021103 140 SDIVLMVLDAS 150 (317)
Q Consensus 140 ~d~i~~v~~~~ 150 (317)
.++++++....
T Consensus 113 ~~~il~v~~~~ 123 (257)
T d1h65a_ 113 IDVLLYVDRLD 123 (257)
T ss_dssp ECEEEEEEESS
T ss_pred CCeEEEEEECC
Confidence 56677766543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=99.50 E-value=1.2e-13 Score=113.55 Aligned_cols=152 Identities=19% Similarity=0.191 Sum_probs=95.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
.-+|+++|++|||||||++.+.+...+ ....|.......+...+..+.++|++|...... .....+..++
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~~~~---~~~~t~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~~ 86 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIGEVV---TTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRP-------YWRCYYADTA 86 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCSEEE---EECSSTTCCEEEEEETTEEEEEEEEC----CCT-------TGGGTTTTEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCC---ccccccceEEEEEeeCCEEEEEEecccccccch-------hHHhhhccce
Confidence 357999999999999999999866532 223345555566777888999999998533211 1122356789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.+++++|..+..... .+..++... +..
T Consensus 87 ~ii~v~d~~d~~s~~-~~~~~l~~~-------------------------------------------~~~--------- 113 (182)
T d1moza_ 87 AVIFVVDSTDKDRMS-TASKELHLM-------------------------------------------LQE--------- 113 (182)
T ss_dssp EEEEEEETTCTTTHH-HHHHHHHHH-------------------------------------------TTS---------
T ss_pred eEEEEeeecccccch-hHHHHHHHH-------------------------------------------HHh---------
Confidence 999999876543221 111111110 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh---hhHHH-Hh----cC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI---DDVDK-LA----RQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~---~~~~~-l~----~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|.||+|+... .++.. +. .. ..++.+||++|+|++++.+.|.+.+.
T Consensus 114 ------------~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~ 178 (182)
T d1moza_ 114 ------------EELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178 (182)
T ss_dssp ------------STTSSCEEEEEEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred ------------hccCCcceEEEEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 00124799999999999642 33322 11 11 13678999999999999999887653
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=99.49 E-value=1.1e-13 Score=115.38 Aligned_cols=83 Identities=19% Similarity=0.158 Sum_probs=61.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC----------------CCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH----------------SEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEG 126 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~----------------~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~ 126 (317)
-.||++|..++|||||+++|++.. .+.....|.|.+...-.+.+.+..+.++|+||..+.
T Consensus 4 ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f---- 79 (196)
T d1d2ea3 4 VNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADY---- 79 (196)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHH----
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHH----
Confidence 469999999999999999998631 111223467777766666777889999999996431
Q ss_pred chhHHHHHhhhccCcEEEEEecCCCc
Q 021103 127 KGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 127 ~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|..++++++...
T Consensus 80 ---~~~~~~~~~~aD~allVVda~~G 102 (196)
T d1d2ea3 80 ---VKNMITGTAPLDGCILVVAANDG 102 (196)
T ss_dssp ---HHHHHHTSSCCSEEEEEEETTTC
T ss_pred ---HHHHHHHHhhcCeEEEEEEcCCC
Confidence 23455667889999999998754
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=7.3e-13 Score=107.58 Aligned_cols=149 Identities=19% Similarity=0.196 Sum_probs=97.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++|+|.+|||||||++.+++...+....|.++.+...-.+.+++.. +.++||+|-... .......++.++
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~-------~~~~~~~~~~~~ 79 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERF-------RSITQSYYRSAN 79 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHGGGSTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCCchhh-------HHHHHHHHhccc
Confidence 79999999999999999999766555566677777777788888866 457899983210 011123457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+....... ..+.+++.. +.+
T Consensus 80 ~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------i~~------------- 105 (171)
T d2ew1a1 80 ALILTYDITCEESF-RCLPEWLRE----------------------------------------IEQ------------- 105 (171)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHH-------------
T ss_pred eEEEeeecccchhh-hhhhhhhhh----------------------------------------hcc-------------
Confidence 99999987654221 111111110 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWE 285 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~ 285 (317)
......|.++|.||+|+... ++.+.+.+ ....+.+||++|.|++++.+.|..
T Consensus 106 ------------~~~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~ 164 (171)
T d2ew1a1 106 ------------YASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164 (171)
T ss_dssp ------------HSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred ------------cccccccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence 01124788999999998643 22222222 346788999999999999776654
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.47 E-value=5.2e-13 Score=107.75 Aligned_cols=149 Identities=18% Similarity=0.218 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|+|||||++.+++...+....|....+.....+..++.. +.++|++|....... ....++.++
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~-------~~~~~~~~~ 76 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAI-------TKAYYRGAQ 76 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCC-------CHHHHTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccchhhh-------hhhhhccCc
Confidence 68999999999999999988644322222322334445556666654 567899885432111 122457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+...- +.+..++.. +
T Consensus 77 ~~i~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i----------- 100 (164)
T d1z2aa1 77 ACVLVFSTTDRESF-EAISSWREK--------------------------------------------V----------- 100 (164)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H-----------
T ss_pred eEEEEEeccchhhh-hhccccccc--------------------------------------------c-----------
Confidence 99999987654321 112222111 0
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......|.++|.||+|+... ++.+.+.+ ..+.+.+||++|.|++++.+.|.+.
T Consensus 101 -----------~~~~~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~ 161 (164)
T d1z2aa1 101 -----------VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 161 (164)
T ss_dssp -----------HHHHCSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred -----------cccCCCceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence 011124789999999998643 23333322 2357889999999999999888664
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=99.46 E-value=8.8e-13 Score=105.00 Aligned_cols=149 Identities=13% Similarity=0.112 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+|+|+|++|||||||+|.|++.... ..++.+ .............+.+.|++|..... .........++.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~~~ 71 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGEIV-TTIPTI--GFNVETVEYKNISFTVWDVGGQDKIR-------PLWRHYFQNTQGL 71 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSS-CCCCCS--SCCEEEEECSSCEEEEEECCCCGGGH-------HHHHHHTTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCC-ccccce--eeEEEEEeeeeEEEEEecCCCcccch-------hhhhhhhccceeE
Confidence 6899999999999999999876532 111111 12233444556678889998864321 1223345678889
Q ss_pred EEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCCC
Q 021103 144 LMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFREDA 223 (317)
Q Consensus 144 ~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd~ 223 (317)
+++.+...............+.. .
T Consensus 72 i~~~d~~~~~~~~~~~~~~~~~~--------------------------------------------~------------ 95 (160)
T d1r8sa_ 72 IFVVDSNDRERVNEAREELMRML--------------------------------------------A------------ 95 (160)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHH--------------------------------------------T------------
T ss_pred EEEEEecChHHHHHHHHHHHHHH--------------------------------------------H------------
Confidence 88888765432211111111100 0
Q ss_pred ChhhHHHHHhcccceeeeeEEEecccCCChhh---HHH-----HhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 224 TVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDK-----LARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 224 ~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~-----l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|.++|.||.|+..... +.. .... ...+++||++|+|++++.+.|.+.|
T Consensus 96 ---------~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l 160 (160)
T d1r8sa_ 96 ---------EDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160 (160)
T ss_dssp ---------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred ---------hhcccCceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence 00112478999999999875322 211 1111 2367799999999999999987653
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=7.1e-13 Score=122.24 Aligned_cols=85 Identities=21% Similarity=0.181 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-----CCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhh
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-----EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVS 137 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-----~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~ 137 (317)
-.|||+|.+|||||||+|+|.|... ...+..+||+++.... ..++.++.++||||+.........+.. ...+
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~-~~~~~~~~l~DtPG~~~~~~~~~~~~~--~~~~ 133 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK-HPNIPNVVFWDLPGIGSTNFPPDTYLE--KMKF 133 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE-CSSCTTEEEEECCCGGGSSCCHHHHHH--HTTG
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeee-ccCCCeEEEEeCCCcccccccHHHHHH--Hhhh
Confidence 4799999999999999999999542 2345667888876533 234556889999998653322111111 1234
Q ss_pred ccCcEEEEEecCC
Q 021103 138 KSSDIVLMVLDAS 150 (317)
Q Consensus 138 ~~~d~i~~v~~~~ 150 (317)
..+|+++++.+..
T Consensus 134 ~~~d~~l~~~~~~ 146 (400)
T d1tq4a_ 134 YEYDFFIIISATR 146 (400)
T ss_dssp GGCSEEEEEESSC
T ss_pred hcceEEEEecCCC
Confidence 5688888877654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.2e-12 Score=105.41 Aligned_cols=153 Identities=18% Similarity=0.208 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|||||||++.+++...+....|.++.+...-.+..+|. .+.++|++|..... ......+..++
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~~ 74 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFR-------SLIPSYIRDSA 74 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGG-------GGHHHHHTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCcchhc-------cchHHHhhccc
Confidence 6899999999999999999876543333333344444445556664 45678988753211 11223467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+......- ..+..++.. +.
T Consensus 75 ~~ilv~d~~~~~s~-~~i~~~~~~--------------------------------------------~~---------- 99 (164)
T d1yzqa1 75 AAVVVYDITNVNSF-QQTTKWIDD--------------------------------------------VR---------- 99 (164)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------HH----------
T ss_pred eEEEeeccccccch-hhhHhhHHH--------------------------------------------HH----------
Confidence 99999987654321 112211111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhCe
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMGL 289 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~~ 289 (317)
.. .....|+++|.||+|+... ++...+.+. ...+.+||++|.|++++.+.|.+.|+.
T Consensus 100 --------~~---~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~g 163 (164)
T d1yzqa1 100 --------TE---RGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG 163 (164)
T ss_dssp --------HH---HTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSCC
T ss_pred --------Hh---cCCCceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhCC
Confidence 00 0124789999999998643 223333332 246779999999999999999998864
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=2.3e-12 Score=104.86 Aligned_cols=152 Identities=19% Similarity=0.233 Sum_probs=100.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|||||||++.+++.. ...+++.|+.+...-.+.++|.. +.++|++|...... .....+..+
T Consensus 7 ~Kv~lvG~~~vGKTsLi~r~~~~~-f~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~-------~~~~~~~~~ 78 (173)
T d2fn4a1 7 HKLVVVGGGGVGKSALTIQFIQSY-FVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGA-------MREQYMRAG 78 (173)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSC-------CHHHHHHHC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC-CCcccccccccceeeEeccCCeeeeeecccccccccccc-------ccchhhccc
Confidence 479999999999999999988644 34567777777777778888875 45689988543211 112235679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|....... ..+..++.. +.+.
T Consensus 79 ~~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------i~~~----------- 106 (173)
T d2fn4a1 79 HGFLLVFAINDRQSF-NEVGKLFTQ----------------------------------------ILRV----------- 106 (173)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHHH-----------
T ss_pred eeeeeeccccccccc-chhhhhhHH----------------------------------------HHHH-----------
Confidence 999999988654221 122222111 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+. ...+.+||++|.|++++.+.+.+.+
T Consensus 107 ------------~-~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i 167 (173)
T d2fn4a1 107 ------------K-DRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAV 167 (173)
T ss_dssp ------------H-TSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ------------h-ccCCCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 0 1124799999999998643 223333222 3457789999999999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.43 E-value=9.7e-13 Score=110.31 Aligned_cols=83 Identities=20% Similarity=0.175 Sum_probs=64.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc---CCC---C------Cccc-----cceeeeeeEEEEECCeeEEEecCCCccccccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT---HSE---A------ASYE-----FTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~---~~~---v------~~~p-----~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 125 (317)
..||++|..++|||||+++|+.. ... + ...| |.|.+.....+.+++..+.++||||..+.
T Consensus 4 ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df--- 80 (204)
T d2c78a3 4 VNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY--- 80 (204)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG---
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhh---
Confidence 46999999999999999999633 111 1 1112 88998888888999999999999997542
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.......+..+|..++++++...
T Consensus 81 ----~~~~~~~~~~aD~avlVvda~~G 103 (204)
T d2c78a3 81 ----IKNMITGAAQMDGAILVVSAADG 103 (204)
T ss_dssp ----HHHHHHHHTTCSSEEEEEETTTC
T ss_pred ----HHHHHHHHHHCCEEEEEEECCCC
Confidence 24556677889999999998654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.43 E-value=3.4e-12 Score=103.37 Aligned_cols=151 Identities=18% Similarity=0.168 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|||||||++.+++...+....|..+.+...-.+...+. .+.++||||-... ..-....++.+|
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~-------~~~~~~~~~~ad 79 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERY-------RTITTAYYRGAM 79 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGG-------HHHHHTTTTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCCchhh-------HHHHHHHHhcCC
Confidence 6999999999999999999866533233333344444555666654 4678999984211 011122467899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|....... ..+..+... ..
T Consensus 80 ~~ilv~d~~~~~s~-~~~~~~~~~-----------------------------------------~~------------- 104 (169)
T d3raba_ 80 GFILMYDITNEESF-NAVQDWSTQ-----------------------------------------IK------------- 104 (169)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HH-------------
T ss_pred EEEEEEECccchhh-hhhhhhhhh-----------------------------------------hh-------------
Confidence 99999987654221 111111100 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|+++|.||+|+... ++.+.+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 105 -----------~~~~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i 166 (169)
T d3raba_ 105 -----------TYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVI 166 (169)
T ss_dssp -----------HHCCSCCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------cccCCcceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 001225788899999998643 23333322 23578899999999999999887754
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3.2e-12 Score=103.64 Aligned_cols=152 Identities=20% Similarity=0.237 Sum_probs=96.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|||||||++.+++... ..++..|+.+...-.+.++|.. +.++|++|..... ......+..+
T Consensus 6 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~ 77 (171)
T d2erya1 6 YRLVVVGGGGVGKSALTIQFIQSYF-VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG-------AMREQYMRTG 77 (171)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC-CSSCCTTCCEEEEEEEEETTEEEEEEEEECC----CC-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCcccccceeeeeeeccccccccccccccccccc-------cccccccccc
Confidence 3799999999999999999886532 3455556666666777788764 6678988754321 1122345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|...+..- ..+..++. .+++..
T Consensus 78 ~~~ilv~d~~~~~s~-~~~~~~~~----------------------------------------~~~~~~---------- 106 (171)
T d2erya1 78 EGFLLVFSVTDRGSF-EEIYKFQR----------------------------------------QILRVK---------- 106 (171)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH----------------------------------------HHHHHH----------
T ss_pred ceEEEeeccccccch-hhHHHHhH----------------------------------------HHHhhc----------
Confidence 999999987654321 11211111 111110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.....|.++|.||+|+... ++.+.+.+. .+.+.+||++|.|++++.+.|.+.+
T Consensus 107 --------------~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i 166 (171)
T d2erya1 107 --------------DRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI 166 (171)
T ss_dssp --------------TSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred --------------ccCCCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence 1124789999999998643 233333332 2457799999999999999987765
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.4e-12 Score=104.88 Aligned_cols=151 Identities=21% Similarity=0.193 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|||||||++.+.+...+....+.++.+...-.+.+++.. +.+.|++|-..... .....++.++
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~-------~~~~~~~~~~ 78 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRR-------ITSAYYRGAV 78 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTC-------CCHHHHTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHH-------HHHHHhhccC
Confidence 69999999999999999998765544445566666666667787764 56889988422111 1123457799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
+++++.+...+... ..+.+++.. +.
T Consensus 79 ~~i~v~d~~~~~S~-~~~~~~~~~--------------------------------------------i~---------- 103 (175)
T d2f9la1 79 GALLVYDIAKHLTY-ENVERWLKE--------------------------------------------LR---------- 103 (175)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------HH----------
T ss_pred eEEEEEECCCcccc-hhHHHHHHH--------------------------------------------HH----------
Confidence 99999987654221 111111111 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .. ....|+++|.||+|+.... ...... .....+.+||++|.|++++.+.+.+.+
T Consensus 104 --------~-~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i 165 (175)
T d2f9la1 104 --------D-HA--DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI 165 (175)
T ss_dssp --------H-HS--CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------H-hc--CCCCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHH
Confidence 0 00 1246999999999987431 111111 234568899999999999988776653
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=3e-12 Score=103.76 Aligned_cols=153 Identities=22% Similarity=0.208 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+++|.+|+|||||++.+++..- ..+|..|.-+.....+.+++.. +.+.|++|..... ......+..+
T Consensus 3 ~Ki~viG~~~vGKTsLi~r~~~~~f-~~~~~~T~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~-------~~~~~~~~~a 74 (171)
T d2erxa1 3 YRVAVFGAGGVGKSSLVLRFVKGTF-RESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFP-------AMQRLSISKG 74 (171)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTCCC-CSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CCccCcceeeccccceeeccccceecccccccccccc-------ccccccccce
Confidence 3789999999999999999887542 2445545444445556677764 4568988753211 1222345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..+.... ..+..++.. +.
T Consensus 75 ~~~ilv~d~~~~~s~-~~~~~~~~~----------------------------------------~~------------- 100 (171)
T d2erxa1 75 HAFILVYSITSRQSL-EELKPIYEQ----------------------------------------IC------------- 100 (171)
T ss_dssp SEEEEEEETTCHHHH-HTTHHHHHH----------------------------------------HH-------------
T ss_pred eEEEEEeecccccch-hcccchhhh----------------------------------------hh-------------
Confidence 999999987654221 111111100 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
...+.....|+++|.||+|+... ++.+.+.+. ...+.+||++|.|++++.+.|.+..
T Consensus 101 ----------~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~ 164 (171)
T d2erxa1 101 ----------EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE 164 (171)
T ss_dssp ----------HHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred ----------hhhccCCCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 00111235799999999998643 233333322 3467889999999999999988764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=4.1e-12 Score=102.52 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=95.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+|+|.+|+|||||++.+.+...+....|.++.+...-.+.++|. .+.++|++|-.... .-....++.+|
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~~~d 78 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFR-------AVTRSYYRGAA 78 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTC-------HHHHHHHHTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCCchhHH-------HHHHHHhcCCc
Confidence 6999999999999999999876544333444555555556677776 46678999842210 11123456799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+..+... ...+..++.. +..
T Consensus 79 ~~ilv~d~~~~~s-~~~~~~~~~~-----------------------------------------~~~------------ 104 (166)
T d1z0fa1 79 GALMVYDITRRST-YNHLSSWLTD-----------------------------------------ARN------------ 104 (166)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHH-----------------------------------------HHH------------
T ss_pred EEEEEeccCchHH-HHHHHHHHHH-----------------------------------------HHh------------
Confidence 9999988765321 1111111111 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 105 ----------~--~~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i 165 (166)
T d1z0fa1 105 ----------L--TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 165 (166)
T ss_dssp ----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------h--ccccceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 0 1124688999999998533 23333332 23567899999999999998887653
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=99.42 E-value=2.3e-12 Score=104.65 Aligned_cols=151 Identities=17% Similarity=0.162 Sum_probs=90.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
..+|+|+|.+|||||||++.|.+.... .... .......+...+.++...|+++..... ......+..+
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~~~~~~~-------~~~~~~~~~~ 83 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPT----IGSNVEEIVINNTRFLMWDIGGQESLR-------SSWNTYYTNT 83 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCEEEECC----SCSSCEEEEETTEEEEEEECCC----C-------GGGHHHHTTC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccccc----cceeEEEEeecceEEEEeccccccccc-------cchhhhhccc
Confidence 358999999999999999999986532 2222 222334556667788888877643211 1122234668
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++++......... ........ ..
T Consensus 84 ~~~i~v~d~~d~~~~~~-~~~~~~~~-------------------------------------------~~--------- 110 (177)
T d1zj6a1 84 EFVIVVVDSTDRERISV-TREELYKM-------------------------------------------LA--------- 110 (177)
T ss_dssp CEEEEEEETTCTTTHHH-HHHHHHHH-------------------------------------------HT---------
T ss_pred eeeeeecccccccchhh-hhhhhhhh-------------------------------------------hh---------
Confidence 88888887654322111 11000000 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhh---HHHHh-----c--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VDKLA-----R--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~~l~-----~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.......|.++|.||.|+..... ..... . ...++.+||++|.|++++.+.|.+.+.
T Consensus 111 ------------~~~~~~~p~iiv~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk 176 (177)
T d1zj6a1 111 ------------HEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 176 (177)
T ss_dssp ------------SGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred ------------cccccceEEEEEEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 00112579999999999875432 22211 1 123777999999999999999988764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=99.42 E-value=4e-12 Score=102.91 Aligned_cols=152 Identities=22% Similarity=0.218 Sum_probs=95.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|||||||++.+++.. ...+|..|.-+.....+.++|.. +.++|++|..... ......++.+
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~~~-f~~~~~~T~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~-------~~~~~~~~~~ 76 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMYDE-FVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA-------AIRDNYFRSG 76 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CH-------HHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCC-CCcccCCccccccccccccccccccccccccccccchh-------hhhhhccccc
Confidence 379999999999999999987643 23455555555556677788865 5578888753311 1112345679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.+..+... .+.+..++.. +++.
T Consensus 77 ~~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~----------- 104 (168)
T d1u8za_ 77 EGFLCVFSITEMES-FAATADFREQ----------------------------------------ILRV----------- 104 (168)
T ss_dssp SEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHHH-----------
T ss_pred ceeEEEeeccchhh-hhhHHHHHHH----------------------------------------HHHh-----------
Confidence 99999998765432 1222222211 1110
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++.+.+.+ ..+.+.+||++|.|++++.+.|.+.+
T Consensus 105 ------------~-~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i 165 (168)
T d1u8za_ 105 ------------K-EDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165 (168)
T ss_dssp ------------H-CCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------h-CCCCCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 0 0124789999999998532 33333322 23468899999999999988876644
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=3.9e-13 Score=112.32 Aligned_cols=82 Identities=20% Similarity=0.253 Sum_probs=60.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
.+|+|+|++|||||||+|.|+|... .|+||++...+.+.+++..+.++|+||...... .............+.
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~~----~~~tt~~~~~~~~~~~~~~~~l~D~~g~~~~~~---~~~~~~~~~~~~~~~ 76 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDSV----RPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRY---KLSDYLKTRAKFVKG 76 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSC----CCBCCCSSCEEETTGGGSSCEEEECCCCGGGTH---HHHHHHHHHGGGEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC----CCeEEecceEEEEEeCCeEEEEEecccccchhh---HHHHHHHHHhhhccc
Confidence 5899999999999999999998754 378898888888888899999999999653211 111122233445677
Q ss_pred EEEEecCCC
Q 021103 143 VLMVLDASK 151 (317)
Q Consensus 143 i~~v~~~~~ 151 (317)
++++++...
T Consensus 77 ~i~~vd~~~ 85 (209)
T d1nrjb_ 77 LIFMVDSTV 85 (209)
T ss_dssp EEEEEETTS
T ss_pred cceEEEEec
Confidence 777777543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.40 E-value=4.9e-12 Score=102.77 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=84.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccce-eeeeeEEEEECC---eeEEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTT-LTCIPGIIHYND---TKIQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT-~~~~~G~i~~~g---~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
+++|+|++|||||||++.+++...+ ..+..|+ .....-...+.+ ..+.+.|++|..... ......++.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~ 75 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDKYS-QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQ-------SLGVAFYRG 75 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-TTC---CCCSCEEEEECCSSSCCEEEEEECCC-----------------CCSTT
T ss_pred EEEEECCCCcCHHHHHHHHHcCCCC-CccCcccccceeeeeeeecCcccccceeeccCCchhhh-------hHHHHHhhc
Confidence 6999999999999999999875532 2222221 111111222222 346778998843211 111224567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
++.++++.+......- ..+..++.. +......
T Consensus 76 ~~~~ilv~d~~~~~s~-~~~~~~~~~----------------------------------------i~~~~~~------- 107 (175)
T d1ky3a_ 76 ADCCVLVYDVTNASSF-ENIKSWRDE----------------------------------------FLVHANV------- 107 (175)
T ss_dssp CCEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHHHCC-------
T ss_pred cceEEEEeeccccccc-chhhhcchh----------------------------------------hhhhhhh-------
Confidence 8999999887654321 112222111 1100000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh------hhHHHHh-c--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI------DDVDKLA-R--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~------~~~~~l~-~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
......|+++|.||+|+... ++.+.+. + ....+.+||++|.|++++.+.|.+.
T Consensus 108 --------------~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~ 169 (175)
T d1ky3a_ 108 --------------NSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS 169 (175)
T ss_dssp --------------SCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred --------------cccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence 01124799999999998643 2223332 2 2457889999999999998888654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=3.4e-12 Score=103.32 Aligned_cols=150 Identities=17% Similarity=0.155 Sum_probs=88.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+|+|.+|+|||||++.+.+... ..++-|+.+.....+.++|.. +.++|++|-..... -....++.+|
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~e~~~~-------~~~~~~~~~d 73 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED--GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRW-------LPGHCMAMGD 73 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-----------CEEEEEEEEETTEEEEEEEEECC--------------CHHHHHTSCS
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc--CCcCCeeeeeecceeeccccccceeeeecccccccce-------ecccchhhhh
Confidence 689999999999999999988653 223333444444567778764 56789998422110 0123457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+... ...+..++.. +.
T Consensus 74 ~~ilv~d~t~~~s-~~~~~~~~~~--------------------------------------------i~---------- 98 (168)
T d2gjsa1 74 AYVIVYSVTDKGS-FEKASELRVQ--------------------------------------------LR---------- 98 (168)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH----------
T ss_pred hhceecccccccc-ccccccccch--------------------------------------------hh----------
Confidence 9999998765432 1122222211 10
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... .+.+.+.. ....+.+||++|.|++++.+.|.+.+
T Consensus 99 ---------~~~-~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i 161 (168)
T d2gjsa1 99 ---------RAR-QTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 161 (168)
T ss_dssp ---------HHC-C--CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ---------ccc-ccccceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence 000 0124699999999998753 22222222 23467899999999999999887643
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5.6e-12 Score=101.73 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||++.+++...+ ..+..|.-....-.+.++|.. +.+.|++|....... ....+..+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~d~~g~~~~~~~-------~~~~~~~~ 76 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFV-DSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIF-------PQTYSIDI 76 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SCCCSSCCEEEEEEEEETTEEEEEEEEECCCCCTTCCC-------CGGGTSSC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceecccceEEecCcEEEEeeecccccccccccc-------cchhhhhh
Confidence 47999999999999999998764422 333333333334566778865 456888875432111 11235679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..++.. ...+..++.. +.+
T Consensus 77 d~~ilv~d~~~~~s-~~~~~~~~~~----------------------------------------i~~------------ 103 (167)
T d1xtqa1 77 NGYILVYSVTSIKS-FEVIKVIHGK----------------------------------------LLD------------ 103 (167)
T ss_dssp CEEEEEEETTCHHH-HHHHHHHHHH----------------------------------------HHH------------
T ss_pred hhhhhhcccchhhh-hhhhhhhhhh----------------------------------------hhh------------
Confidence 99999998765432 1222222111 111
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.. .....|+++|.||+|+... ++...+.+. ...+.+||++|.|++++.+.|...
T Consensus 104 ----------~~--~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~ 164 (167)
T d1xtqa1 104 ----------MV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE 164 (167)
T ss_dssp ----------HH--CSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred ----------cc--cccccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHH
Confidence 01 1124799999999998643 333333322 245778999999999999887654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=5e-12 Score=103.89 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC------------eeEEEecCCCccccccCCchhHH
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND------------TKIQLLDLPGIIEGASEGKGRGR 131 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g------------~~i~~~d~~g~~~~~~~~~~~~~ 131 (317)
+|+|+|.+|||||||++.+++...+-...+..+.+...-.+.+++ ..+.+.|++|-... ..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~-------~~ 79 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF-------RS 79 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH-------HH
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhh-------HH
Confidence 699999999999999999987653322233333333333443332 23556676652110 01
Q ss_pred HHHhhhccCcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhc
Q 021103 132 QVIAVSKSSDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYK 211 (317)
Q Consensus 132 ~~~~~~~~~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~ 211 (317)
-....+..+|.++++.|...... .+.+..++..+..
T Consensus 80 ~~~~~~~~~~~~i~v~d~~~~~s-~~~~~~~~~~~~~------------------------------------------- 115 (186)
T d2f7sa1 80 LTTAFFRDAMGFLLMFDLTSQQS-FLNVRNWMSQLQA------------------------------------------- 115 (186)
T ss_dssp HHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHTCCC-------------------------------------------
T ss_pred HHHHHHhcCCEEEEEEecccccc-ceeeeeccchhhh-------------------------------------------
Confidence 11224578999999999765422 2222222221100
Q ss_pred ccCcEEEecCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHH
Q 021103 212 IHNAEVLFREDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMW 284 (317)
Q Consensus 212 ~~~~~i~~shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~ 284 (317)
. ......|+++|.||.|+... ++...+.+ ....+.+||++|.|++++.+.|.
T Consensus 116 -~--------------------~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~ 174 (186)
T d2f7sa1 116 -N--------------------AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 174 (186)
T ss_dssp -C--------------------CTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHH
T ss_pred -h--------------------ccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHH
Confidence 0 00124688999999998643 23333332 23578999999999999999887
Q ss_pred HHh
Q 021103 285 EEM 287 (317)
Q Consensus 285 ~~l 287 (317)
+.+
T Consensus 175 ~~i 177 (186)
T d2f7sa1 175 DLI 177 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.1e-11 Score=99.95 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=93.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+++|.+|||||||++.+++...+ ..++.|..+.....+..+|.. +.++|++|..... ......+..+
T Consensus 4 ~Ki~viG~~~vGKTsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-------~~~~~~~~~~ 75 (166)
T d1ctqa_ 4 YKLVVVGAGGVGKSALTIQLIQNHFV-DEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS-------AMRDQYMRTG 75 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCCCC-CSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGH-------HHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCC-CccCCccceeeccceeeeceeeeeeeeeccCccccc-------cchhhhhhcc
Confidence 37999999999999999999875433 334444434444455666655 4566777643211 1222345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+..+.... +.+..++.. +
T Consensus 76 ~~~iiv~d~~~~~s~-~~~~~~~~~--------------------------------------------i---------- 100 (166)
T d1ctqa_ 76 EGFLCVFAINNTKSF-EDIHQYREQ--------------------------------------------I---------- 100 (166)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------H----------
T ss_pred cccceeecccccccH-HHHHHHHHH--------------------------------------------H----------
Confidence 999999887654221 112221111 0
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.... .....|+++|.||+|+... ++.+.+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 101 ---------~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i 163 (166)
T d1ctqa_ 101 ---------KRVK-DSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163 (166)
T ss_dssp ---------HHHH-TCSSCCEEEEEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ---------HHhc-CCCCCeEEEEecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence 0000 1124799999999998643 23333322 23578899999999999999887655
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=3.5e-12 Score=101.51 Aligned_cols=79 Identities=20% Similarity=0.298 Sum_probs=51.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcEE
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIV 143 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i 143 (317)
+++|+|++|||||||+|.|++.... . ...|.......+.+.+......|+++..... .........++.+
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~~~--~-~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 71 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDRLA--T-LQPTWHPTSEELAIGNIKFTTFDLGGHIQAR-------RLWKDYFPEVNGI 71 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC--C-CCCCCSCEEEEECCTTCCEEEEECCCSGGGG-------GGGGGGCTTCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC--e-eeceeeEeEEEeccCCeeEEEEeeccchhhh-------hhHhhhhhheeee
Confidence 7899999999999999999987643 1 1233444445556667777788887643211 1122234557788
Q ss_pred EEEecCCCc
Q 021103 144 LMVLDASKS 152 (317)
Q Consensus 144 ~~v~~~~~~ 152 (317)
+++++....
T Consensus 72 ~~~~d~~~~ 80 (166)
T d2qtvb1 72 VFLVDAADP 80 (166)
T ss_dssp EEEEETTCG
T ss_pred eeeccccch
Confidence 888876654
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=9.3e-12 Score=101.12 Aligned_cols=150 Identities=21% Similarity=0.185 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|||||||++.+.+...+....|.++...........+. .+.+.|++|-..... .....+..+|
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~d 77 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRS-------ITRSYYRGAA 77 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSC-------CCHHHHTTCS
T ss_pred EEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCccchhh-------HHHHHhhccC
Confidence 6899999999999999998876544444555556666666666664 457789888533211 1122346789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.+..++..- ..+..++.. +.+
T Consensus 78 ~~ilv~d~~~~~sf-~~~~~~~~~----------------------------------------~~~------------- 103 (173)
T d2a5ja1 78 GALLVYDITRRETF-NHLTSWLED----------------------------------------ARQ------------- 103 (173)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHH-------------
T ss_pred EEEEEEeecChHHH-HhHHHHHHH----------------------------------------HHH-------------
Confidence 99999987654221 111111111 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.
T Consensus 104 ----------~--~~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~ 163 (173)
T d2a5ja1 104 ----------H--SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 163 (173)
T ss_dssp ----------H--SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHH
T ss_pred ----------h--CCCCCeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHH
Confidence 0 1124799999999997532 22222222 2357789999999999998877664
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=7e-12 Score=102.21 Aligned_cols=82 Identities=17% Similarity=0.240 Sum_probs=53.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+|+|.+|+|||||++.+++...+ ..+..|.-+...-.+.+++. .+.++|++|...... .....++.+
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~ 74 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKDQFP-EVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDR-------LRPLSYPDT 74 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeeccccccccccceeeeccccCccchhcc-------cchhhcccc
Confidence 37899999999999999999876432 22333322333344556665 467899988532111 112345779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.++++.|...+
T Consensus 75 ~~~ilv~d~~~~ 86 (177)
T d1kmqa_ 75 DVILMCFSIDSP 86 (177)
T ss_dssp SEEEEEEETTCH
T ss_pred hhhhhhcccchh
Confidence 999999987654
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=7.5e-12 Score=102.92 Aligned_cols=82 Identities=16% Similarity=0.168 Sum_probs=56.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|||||||++.++... ...++..|+.+.....+.++|.. +.++|++|-..... .....+..+
T Consensus 10 ~Ki~lvG~~~vGKTsLi~r~~~~~-f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e~~~~-------~~~~~~~~a 81 (185)
T d2atxa1 10 LKCVVVGDGAVGKTCLLMSYANDA-FPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDR-------LRPLSYPMT 81 (185)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSS-CCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTT-------TGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHhhCC-CCCcCCCceeeeeeEEEeeCCceEEeecccccccchhhh-------hhhhccccc
Confidence 379999999999999999988643 23556666666666666666654 56889987422110 112245679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.++++.|..+.
T Consensus 82 ~~~ilv~d~t~~ 93 (185)
T d2atxa1 82 DVFLICFSVVNP 93 (185)
T ss_dssp SEEEEEEETTCH
T ss_pred ceeeeccccchH
Confidence 999999998654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.37 E-value=4e-12 Score=103.46 Aligned_cols=81 Identities=19% Similarity=0.295 Sum_probs=49.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
..+|+|+|++|||||||++.|++.... ..+| |.......+.+++..+...++.+...... .........+
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 82 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVP--TLHPTSEELTIAGMTFTTFDLGGHIQARR-------VWKNYLPAIN 82 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-------C--CCCCSCEEEEETTEEEEEEEECC----CC-------GGGGGGGGCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCc-ceec--ccccceeEEEecccccccccccchhhhhh-------HHhhhhcccc
Confidence 358999999999999999999987643 1222 33334445677777777777665432111 1223345677
Q ss_pred EEEEEecCCCc
Q 021103 142 IVLMVLDASKS 152 (317)
Q Consensus 142 ~i~~v~~~~~~ 152 (317)
.+.++.+....
T Consensus 83 ~~~~~~d~~d~ 93 (186)
T d1f6ba_ 83 GIVFLVDCADH 93 (186)
T ss_dssp EEEEEEETTCG
T ss_pred eeeeeeeccCc
Confidence 88888876543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=99.37 E-value=9.5e-12 Score=99.54 Aligned_cols=150 Identities=19% Similarity=0.205 Sum_probs=89.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-+|+|+|.+|||||||+|.+++.... ..+ .|..........++..+...+.++...... .........+.
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 75 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVGEVV-TTI--PTIGFNVETVTYKNLKFQVWDLGGLTSIRP-------YWRCYYSNTDA 75 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSCC-CCC--CCSSEEEEEEEETTEEEEEEEECCCGGGGG-------GGGGGCTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc-cee--cccceeeeeeccCceEEEEeeccccccccc-------cchhhhhhhhh
Confidence 47999999999999999999987532 111 233344455566777777777766432211 11223345677
Q ss_pred EEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecCC
Q 021103 143 VLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRED 222 (317)
Q Consensus 143 i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~shd 222 (317)
++++++................. ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~----------- 100 (169)
T d1upta_ 76 VIYVVDSCDRDRIGISKSELVAM--------------------------------------------LE----------- 100 (169)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHH--------------------------------------------HT-----------
T ss_pred hhhhhhhhhcchhhhccchhhhh--------------------------------------------hh-----------
Confidence 77776654322111111000000 00
Q ss_pred CChhhHHHHHhcccceeeeeEEEecccCCChhh---HH-HHh------cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 223 ATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDD---VD-KLA------RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 223 ~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~---~~-~l~------~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|.++|.||.|+..... +. .+. .....+++||.+|+|++++.+.|.+.+
T Consensus 101 ----------~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l 165 (169)
T d1upta_ 101 ----------EEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETL 165 (169)
T ss_dssp ----------CGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ----------hhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 00112468889999999985432 22 111 123478899999999999999998765
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.6e-11 Score=98.95 Aligned_cols=152 Identities=18% Similarity=0.170 Sum_probs=94.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+|+|.+|||||||++.+++... ..+++.|.-+...-.+.+++.. +.++|++|-... ........+.+
T Consensus 4 ~Ki~lvG~~~vGKTsLi~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-------~~~~~~~~~~a 75 (167)
T d1kaoa_ 4 YKVVVLGSGGVGKSALTVQFVTGTF-IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQF-------ASMRDLYIKNG 75 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCC-------HHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CCccCCceeeeeeeeeecCcceEeeccccCCCcccc-------ccchHHHhhcc
Confidence 3799999999999999999987543 2344444444444556667654 556888874221 11223345779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+..+...- ..+..+... +.
T Consensus 76 ~~~ilv~d~~~~~s~-~~~~~~~~~--------------------------------------------~~--------- 101 (167)
T d1kaoa_ 76 QGFILVYSLVNQQSF-QDIKPMRDQ--------------------------------------------II--------- 101 (167)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH--------------------------------------------HH---------
T ss_pred cceeeeeeecchhhh-hhhhchhhh--------------------------------------------hh---------
Confidence 999999987654221 111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++...+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 102 ----------~~~-~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i 164 (167)
T d1kaoa_ 102 ----------RVK-RYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164 (167)
T ss_dssp ----------HHT-TTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHH
T ss_pred ----------hhc-cCCCCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHH
Confidence 000 1125799999999998643 22222221 23578899999999999999887655
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.36 E-value=3.8e-12 Score=104.46 Aligned_cols=153 Identities=17% Similarity=0.212 Sum_probs=89.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+|+++|.+|||||||++.+++...+ ..|+-| ..+...-.+...+ ..+.+.|++|....... ....+..+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~-------~~~~~~~~ 75 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNKKFS-NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL-------GVAFYRGA 75 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCC-SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS-------CCGGGTTC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC-CCcCCccceeeeeeeeeeCCceEEEEeeecCCccccccc-------ccccccCc
Confidence 6899999999999999999875432 222211 1122222233333 35677898885432211 12235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... ...+..+++. +.....
T Consensus 76 ~~~i~~~d~~~~~~-~~~~~~~~~~----------------------------------------i~~~~~--------- 105 (184)
T d1vg8a_ 76 DCCVLVFDVTAPNT-FKTLDSWRDE----------------------------------------FLIQAS--------- 105 (184)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHHHC---------
T ss_pred cEEEEeecccchhh-hhcchhhHHH----------------------------------------HHHHhc---------
Confidence 99999998754321 1112222211 111000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHH-hc--CCCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKL-AR--QPNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l-~~--~~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
.......|+++|.||+|+.... ..... .. ....+.+||++|.|++++.+.+.+.
T Consensus 106 ------------~~~~~~ip~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~ 166 (184)
T d1vg8a_ 106 ------------PRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARN 166 (184)
T ss_dssp ------------CSSGGGSCEEEEEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred ------------cccccCCCEEEEEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence 0011246999999999987532 22222 22 3457889999999999999887654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=1.7e-11 Score=101.53 Aligned_cols=149 Identities=17% Similarity=0.147 Sum_probs=91.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC--CccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA--ASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v--~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
+|+|+|++|||||||++.+++...+. .+..+++.. .-.+.++|.. +.++||+|-...... ....++.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~--~~~i~~~~~~~~l~i~Dt~G~e~~~~~-------~~~~~~~ 78 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK--IKTVELDGKTVKLQIWDTAGQERFRTI-------TSSYYRG 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE--EEEEEETTEEEEEEEECCTTTTTTTCC-------CGGGGTT
T ss_pred EEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEE--EEEEEEeeEEEEEEEEECCCchhhHHH-------HHHHhcc
Confidence 69999999999999999988654332 222233332 2345566654 567899985321110 1224578
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
++.++++.|........ .+..+... +..
T Consensus 79 a~~~i~v~d~t~~~s~~-~~~~~~~~-----------------------------------------~~~---------- 106 (194)
T d2bcgy1 79 SHGIIIVYDVTDQESFN-GVKMWLQE-----------------------------------------IDR---------- 106 (194)
T ss_dssp CSEEEEEEETTCHHHHH-HHHHHHHH-----------------------------------------HHH----------
T ss_pred CCEEEEEEeCcchhhhh-hHhhhhhh-----------------------------------------hhh----------
Confidence 99999999876543211 11111100 000
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHh--cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLA--RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~--~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||.|+.... +..... .....+.+||++|.|++++.+.+.+.+
T Consensus 107 --------------~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i 167 (194)
T d2bcgy1 107 --------------YATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQI 167 (194)
T ss_dssp --------------HSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred --------------cccCCceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHH
Confidence 011247999999999987532 222222 234578899999999999988887654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=1.7e-11 Score=99.82 Aligned_cols=153 Identities=19% Similarity=0.164 Sum_probs=95.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+|+++|.+|||||||++.+++...+....+.++.....-.+.+++.. +.++|++|...... .....+..+
T Consensus 8 iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~ 80 (177)
T d1x3sa1 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRT-------LTPSYYRGA 80 (177)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCC-------SHHHHHTTC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHH-------HHHHHHhcC
Confidence 479999999999999999998765443333344444444456676654 67889998533211 112245778
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++++..+.... ..+..++.. +...
T Consensus 81 ~~ii~v~d~~~~~s~-~~~~~~~~~--------------------------------------------i~~~------- 108 (177)
T d1x3sa1 81 QGVILVYDVTRRDTF-VKLDNWLNE--------------------------------------------LETY------- 108 (177)
T ss_dssp CEEEEEEETTCHHHH-HTHHHHHHH--------------------------------------------HTTC-------
T ss_pred CEEEEEEECCCcccc-ccchhhhhh--------------------------------------------hccc-------
Confidence 999999987653221 112222211 1000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|.+++.||.|..... +...+.+ ....+.+||++|.|++++.+.+.+.+
T Consensus 109 -------------~~~~~~~i~~~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l 168 (177)
T d1x3sa1 109 -------------CTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI 168 (177)
T ss_dssp -------------CSCSCCEEEEEEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------ccccceeeEEEeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 011246888999999986432 2222222 23467799999999999998887654
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.36 E-value=6.3e-12 Score=101.31 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=94.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+++++|.+|||||||++.+++...+....|.++.+...-.+.++|.. +.++||||-..... . ....++.++
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~--~-----~~~~~~~~~ 76 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRT--I-----TTAYYRGAM 76 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSC--C-----CHHHHTTEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHH--H-----HHHHHhcCC
Confidence 68999999999999999998765444444556666666677777765 45689999422111 0 112457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+.... +.+..+... ..
T Consensus 77 ~~i~v~d~~~~~s~-~~~~~~~~~-----------------------------------------~~------------- 101 (166)
T d1g16a_ 77 GIILVYDITDERTF-TNIKQWFKT-----------------------------------------VN------------- 101 (166)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH-----------------------------------------HH-------------
T ss_pred EEEEEEECCCccCH-HHHHhhhhh-----------------------------------------hh-------------
Confidence 99999998754321 111111100 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.......|.+++.||.|..... +...+.. ..+.+.+||+++.|++++.+.|.+.+
T Consensus 102 -----------~~~~~~~~~i~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i 162 (166)
T d1g16a_ 102 -----------EHANDEAQLLLVGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI 162 (166)
T ss_dssp -----------HHSCTTCEEEEEEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------ccccCcceeeeecchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence 0011246888899999987532 2222222 34678999999999999999887754
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.35 E-value=2.2e-11 Score=98.19 Aligned_cols=152 Identities=17% Similarity=0.187 Sum_probs=92.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeee-EEEEECCee--EEEecCCCccccccCCchhHHHHHhhhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIP-GIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKS 139 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~-G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 139 (317)
-+|+|+|.+|||||||++.+.+... ..+++.|+..... -.+..++.. +.+.|++|...... -....+..
T Consensus 5 ~Ki~lvG~~~vGKTsli~rl~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~ 76 (167)
T d1z0ja1 5 LKVCLLGDTGVGKSSIMWRFVEDSF-DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRA-------LAPMYYRG 76 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GTHHHHTT
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCC-CcccccccccccccccccccccccceeeeecCCchhhhH-------HHHHHHhh
Confidence 4799999999999999999986543 2344444433332 233344433 45678887533211 11123567
Q ss_pred CcEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEe
Q 021103 140 SDIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLF 219 (317)
Q Consensus 140 ~d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~ 219 (317)
++.++++.|...... ...+..++.. +.
T Consensus 77 ~~~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~~-------- 103 (167)
T d1z0ja1 77 SAAAIIVYDITKEET-FSTLKNWVRE--------------------------------------------LR-------- 103 (167)
T ss_dssp CSEEEEEEETTCHHH-HHHHHHHHHH--------------------------------------------HH--------
T ss_pred ccceEEEeeechhhh-hhhHHHhhhh--------------------------------------------hh--------
Confidence 899999998764322 1112111110 00
Q ss_pred cCCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHhC
Q 021103 220 REDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 220 shd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.. .....|+++|.||+|+... ++...+... ...+.+||++|.|++++...|.+.++
T Consensus 104 -----------~~--~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i~ 166 (167)
T d1z0ja1 104 -----------QH--GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 166 (167)
T ss_dssp -----------HH--SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred -----------hc--cCCcceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence 00 1125789999999998642 233333332 34578999999999999999988764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=2.1e-11 Score=99.01 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=93.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCC-CccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEA-ASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v-~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+|+++|.+|+|||||++.+++..... ..++-+..+.....+.++|..+ .++|+++.... .. .-....++.+
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~-----e~-~~~~~~~~~~ 78 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGE-----NE-WLHDHCMQVG 78 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHH-----HH-HHHHCCCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccccccc-----cc-cccccccccc
Confidence 68999999999999999999876543 3344444556666788887754 56676543111 00 0111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..+...- ..+..+... +.
T Consensus 79 ~~~ilvfd~t~~~s~-~~~~~~~~~--------------------------------------------i~--------- 104 (172)
T d2g3ya1 79 DAYLIVYSITDRASF-EKASELRIQ--------------------------------------------LR--------- 104 (172)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH--------------------------------------------HH---------
T ss_pred ceeeeeecccccchh-hhhhhhhhh--------------------------------------------hh---------
Confidence 999999887654221 112111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++.+.+.. ..+.+.+||++|.|++++.+.|...+
T Consensus 105 ----------~~~-~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i 167 (172)
T d2g3ya1 105 ----------RAR-QTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQV 167 (172)
T ss_dssp ----------TSG-GGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred ----------hcc-ccCCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHH
Confidence 000 0124799999999998643 22233322 23467799999999999999887654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.7e-12 Score=105.47 Aligned_cols=149 Identities=15% Similarity=0.158 Sum_probs=88.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++++|.+|+|||||++.+++...+ ..+..| ..+...-.+..+| ..+.++|++|-..... .....+..+
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~~f~-~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-------~~~~~~~~~ 76 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTGEFE-KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGG-------LRDGYYIQA 76 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC------CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSS-------CGGGGTTTC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC-cccccceeccccccccccccccccccccccccccccce-------ecchhcccc
Confidence 6999999999999999998865432 223222 1222233334455 4567889988432111 112245679
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|..+...- +.+..++.. +.
T Consensus 77 ~~~ilv~d~~~~~Sf-~~~~~~~~~----------------------------------------~~------------- 102 (170)
T d1i2ma_ 77 QCAIIMFDVTSRVTY-KNVPNWHRD----------------------------------------LV------------- 102 (170)
T ss_dssp CEEEEEEETTSGGGG-TTHHHHHHH----------------------------------------HH-------------
T ss_pred cchhhcccccccccc-chhHHHHHH----------------------------------------Hh-------------
Confidence 999999998654321 111111111 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCChhhHH---HHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGIDDVD---KLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~~~~---~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+......+ ..... ...+.+||++|.|++++.+.|.+.+
T Consensus 103 -------------~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l 161 (170)
T d1i2ma_ 103 -------------RVCENIPIVLCGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161 (170)
T ss_dssp -------------HHHCSCCEEEEEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred -------------hccCCCceeeecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 001247999999999997543211 22222 3467899999999999999887655
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=4.3e-11 Score=97.09 Aligned_cols=153 Identities=16% Similarity=0.125 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeee-eeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTC-IPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~-~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+|+++|.+|||||||++.+++... ..+++.|+-.. ....+..++.. +.+.|++|..... ......+..+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~-------~~~~~~~~~~ 79 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTNKF-DTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFR-------SLRTPFYRGS 79 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC-CC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGH-------HHHGGGGTTC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC-CCccccceeeeeeeeeeeecCceeeEeeecccCcceeh-------hhhhhhhhcc
Confidence 699999999999999999886442 33444443333 33455566654 4577888753311 1223445678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.+...... ...+..+++. +.+....
T Consensus 80 ~~~i~~~d~~~~~s-~~~~~~~~~~----------------------------------------i~~~~~~-------- 110 (174)
T d1wmsa_ 80 DCCLLTFSVDDSQS-FQNLSNWKKE----------------------------------------FIYYADV-------- 110 (174)
T ss_dssp SEEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHHHTC--------
T ss_pred ceEEEEEeeecccc-cchhhhHHHH----------------------------------------HHHHhcc--------
Confidence 99999988764321 1112211111 0000000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh----hhHHHHh-cC--CCeEEEeccccccHHHHHHHHHHH
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI----DDVDKLA-RQ--PNSVVISCNLKLNLDRLLARMWEE 286 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~----~~~~~l~-~~--~~~v~iSa~~~~~i~~l~~~i~~~ 286 (317)
......|+++|.||+|+... ++...+. +. ...+.+||+++.|++++.+.+.+.
T Consensus 111 -------------~~~~~~piilVgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~ 170 (174)
T d1wmsa_ 111 -------------KEPESFPFVILGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR 170 (174)
T ss_dssp -------------SCTTTSCEEEEEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred -------------ccCCCceEEEeccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence 00124799999999998642 2333333 22 356889999999999998877654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2e-11 Score=99.10 Aligned_cols=151 Identities=18% Similarity=0.138 Sum_probs=88.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|||||||++.+.+...+....|..+.....-.+..++. .+.++|++|-.... ......+..++
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~~ 79 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFR-------SVTRSYYRGAA 79 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGH-------HHHHTTSTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCCchhhh-------hhHHHHhhhCC
Confidence 6999999999999999998865432111222222222223444444 46788999842210 11223456799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|....... ..+..++.. +..
T Consensus 80 ~~i~v~d~~~~~s~-~~~~~~~~~----------------------------------------~~~------------- 105 (174)
T d2bmea1 80 GALLVYDITSRETY-NALTNWLTD----------------------------------------ARM------------- 105 (174)
T ss_dssp EEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHH-------------
T ss_pred EEEEEEecccchhH-HHHhhhhcc----------------------------------------ccc-------------
Confidence 99999987654221 111111111 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|+++|.||+|+.... ....+.. ....+.+||++|.|++++.+.+.+.+
T Consensus 106 ------------~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i 166 (174)
T d2bmea1 106 ------------LASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI 166 (174)
T ss_dssp ------------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred ------------ccCCceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence 001247999999999986432 2222222 23467899999999999988776653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=3.2e-11 Score=97.18 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=90.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+|+|.+|||||||++.+.+...+....|-...+.....+..+|. .+.++|++|-..... .....++.+|
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~ 77 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHA-------LGPIYYRDSN 77 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC--------------CCSSTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcceecc-------cchhhccCCc
Confidence 6899999999999999998865433222222223333345555553 467889887532111 1112456799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+... .+.+..++...
T Consensus 78 ~~i~v~d~~~~~S-f~~~~~~~~~~------------------------------------------------------- 101 (167)
T d1z08a1 78 GAILVYDITDEDS-FQKVKNWVKEL------------------------------------------------------- 101 (167)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHH-------------------------------------------------------
T ss_pred eeEEEEeCCchhH-HHhhhhhhhhc-------------------------------------------------------
Confidence 9999999775432 11222221110
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhcC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLARQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
... .....|+++|.||+|+... ++.+.+.+. ...+.+||++|.|++++.+.|.+.+
T Consensus 102 -------~~~---~~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i 164 (167)
T d1z08a1 102 -------RKM---LGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 164 (167)
T ss_dssp -------HHH---HGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred -------ccc---cccccceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence 000 0124688889999998643 333433322 3467899999999999998887654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.31 E-value=9.8e-12 Score=100.97 Aligned_cols=151 Identities=15% Similarity=0.166 Sum_probs=76.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|||||||++.+++...+....|..+.+...-.+.++|.. +.++|+||...... .....++.+|
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~-------~~~~~~~~~~ 80 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRT-------ITTAYYRGAM 80 (173)
T ss_dssp EEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC----------------CCTTTTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHH-------HHHHhccCCC
Confidence 69999999999999999998765443444555566666677888765 46699998422110 1112357799
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|...+.. ...+..+...+ ..
T Consensus 81 ~~i~v~d~~~~~s-~~~~~~~~~~~-----------------------------------------~~------------ 106 (173)
T d2fu5c1 81 GIMLVYDITNEKS-FDNIRNWIRNI-----------------------------------------EE------------ 106 (173)
T ss_dssp EEEEEEETTCHHH-HHHHHHHHHHH-----------------------------------------HH------------
T ss_pred EEEEEEECCChhh-HHHHHHHHHHh-----------------------------------------hh------------
Confidence 9999999765432 11121111110 00
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCChh-----hHHHH--hcCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGID-----DVDKL--ARQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~~-----~~~~l--~~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|.++|.||.|..... +.... ......+.+||.+|.|++++.+.|.+.+
T Consensus 107 ------------~~~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i 167 (173)
T d2fu5c1 107 ------------HASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI 167 (173)
T ss_dssp ------------HSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred ------------hccCCceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 011247899999999987532 11111 1234568899999999999999887755
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=6.8e-11 Score=95.53 Aligned_cols=152 Identities=14% Similarity=0.169 Sum_probs=91.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|||||||++.+.+...+....|..+.+...-.+..++. .+.++|++|-.... .-....++.++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~~ 80 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYH-------SLAPMYYRGAQ 80 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGG-------GGHHHHHTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCchhhh-------hhHHHHhhCcc
Confidence 7899999999999999999865533222222222223334455554 35677888743211 01122457899
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+.... ..+..+... +.+
T Consensus 81 ~~ilv~d~~~~~s~-~~~~~~~~~----------------------------------------~~~------------- 106 (170)
T d1r2qa_ 81 AAIVVYDITNEESF-ARAKNWVKE----------------------------------------LQR------------- 106 (170)
T ss_dssp EEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HHH-------------
T ss_pred eEEEEeccchhhHH-HHHHHHhhh----------------------------------------hhh-------------
Confidence 99999887654221 111111100 000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
......|+++|.||+|+... ++...+.. ....+.+||++|.|++++.+.|.+.+.
T Consensus 107 ------------~~~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~ 168 (170)
T d1r2qa_ 107 ------------QASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp ------------HSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred ------------ccCCCceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 01124789999999997633 33333332 235778999999999999999987653
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=7.2e-11 Score=95.38 Aligned_cols=151 Identities=21% Similarity=0.248 Sum_probs=91.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCcc-ccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASY-EFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~-p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++++|++|||||||++.+.+...+...+ +.++.+...-.+.++|.. +.++||+|-..... .....++.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~-------~~~~~~~~~ 80 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRS-------VTHAYYRDA 80 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC---------------CCGGGC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHH-------HHHHhhcCC
Confidence 69999999999999999887654322222 222334444456777764 56889998422110 111235678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.+....... ..+..+.. .+..
T Consensus 81 d~~i~v~d~~~~~s~-~~~~~~~~----------------------------------------~~~~------------ 107 (170)
T d2g6ba1 81 HALLLLYDVTNKASF-DNIQAWLT----------------------------------------EIHE------------ 107 (170)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH----------------------------------------HHHH------------
T ss_pred ceeEEEecCCcccch-hhhhhhhh----------------------------------------hhhh------------
Confidence 999999987654321 11111110 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
......|.++|.||+|.... ++...+.+ ....+.+||++|.|++++.+.|.+.+
T Consensus 108 -------------~~~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i 168 (170)
T d2g6ba1 108 -------------YAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 168 (170)
T ss_dssp -------------HSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred -------------ccCCCceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence 01124688999999998753 22222222 34688899999999999999887654
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=7.5e-11 Score=97.22 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=54.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+|+|.+|+|||||++.+.+...+ .++..|.-+.......++|. .+.++|++|-.... ......++.+|
T Consensus 5 KvvllG~~~vGKTSli~r~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-------~~~~~~~~~~~ 76 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTNKFP-SEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD-------RLRPLSYPQTD 76 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGT-------TTGGGGCTTCS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC-CCcCCceeeecceeEeeCCceeeeeccccccchhhh-------hhhhhcccccc
Confidence 7999999999999999999865432 34444444444455666665 46778988743211 01122456799
Q ss_pred EEEEEecCCCc
Q 021103 142 IVLMVLDASKS 152 (317)
Q Consensus 142 ~i~~v~~~~~~ 152 (317)
.++++.|..+.
T Consensus 77 ~~ilv~d~~~~ 87 (191)
T d2ngra_ 77 VFLVCFSVVSP 87 (191)
T ss_dssp EEEEEEETTCH
T ss_pred eeecccccchH
Confidence 99999998754
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=3.8e-11 Score=98.28 Aligned_cols=82 Identities=18% Similarity=0.191 Sum_probs=54.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeE--EEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKI--QLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i--~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|.+|+|||||++.+++..- ..++..|..+.....+..++..+ .+.|++|-.... ......++.+
T Consensus 6 iKivviG~~~vGKTsli~~~~~~~f-~~~~~~ti~~~~~~~~~~~~~~~~~~~~d~~g~~~~~-------~~~~~~~~~~ 77 (183)
T d1mh1a_ 6 IKCVVVGDGAVGKTCLLISYTTNAF-PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD-------RLRPLSYPQT 77 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC-CSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGT-------TTGGGGCTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CcccccceeeceeeeeeccCcceEEEeecccccccch-------hhhhhccccc
Confidence 4799999999999999999986542 34455555555555667777654 566776532110 0112245679
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.++++.|....
T Consensus 78 ~~~ilv~d~~~~ 89 (183)
T d1mh1a_ 78 DVSLICFSLVSP 89 (183)
T ss_dssp SEEEEEEETTCH
T ss_pred ceeeeeeccchH
Confidence 999999987654
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.3e-10 Score=93.72 Aligned_cols=151 Identities=20% Similarity=0.181 Sum_probs=92.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+++|+|.+|+|||||++.+.+..- ..+|..|.-......+..+|.. +.++|++|.... ......+..+
T Consensus 3 iKi~lvG~~~vGKTsli~r~~~~~f-~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~--------~~~~~~~~~~ 73 (168)
T d2atva1 3 VKLAIFGRAGVGKSALVVRFLTKRF-IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT--------IQREGHMRWG 73 (168)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCC-CSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC--------HHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCC-CCccCCceeccccccccccccceEEEEeeccccccc--------ccchhhhccc
Confidence 4799999999999999999987542 2344444333344556677754 567899885321 1122345678
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
+.++++.|....... ..+..+.. ....
T Consensus 74 ~~~ilv~d~~~~~s~-~~~~~~~~-----------------------------------------~~~~----------- 100 (168)
T d2atva1 74 EGFVLVYDITDRGSF-EEVLPLKN-----------------------------------------ILDE----------- 100 (168)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHH-----------------------------------------HHHH-----------
T ss_pred ccceeecccCCccch-hhhhhhcc-----------------------------------------cccc-----------
Confidence 999999987654221 11111100 0000
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccc-cHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~-~i~~l~~~i~~~l 287 (317)
.......|+++|.||+|+... ++...+.+ ....+.+||++|. +++++...|.+.+
T Consensus 101 ------------~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i 163 (168)
T d2atva1 101 ------------IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREV 163 (168)
T ss_dssp ------------HHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHH
T ss_pred ------------cccccCcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHH
Confidence 001125799999999998632 33333322 2346778999998 5999988887654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.3e-10 Score=92.40 Aligned_cols=152 Identities=18% Similarity=0.200 Sum_probs=93.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|.+|||||||++.+++.... ..+..|..+...-.+.+++.. +.++|++|...... .....++.+
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~-------~~~~~~~~~ 76 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQKIFV-PDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSA-------MREQYMRTG 76 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSSCC-TTCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCS-------SHHHHHHHC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCCC-cccCcceeecccccccccccccccccccccccccccc-------chhhhhhhc
Confidence 36899999999999999998875422 233333333334456666654 56889988543211 112245779
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.+..+...- ..+..++.. +.+.
T Consensus 77 ~~~llv~d~~d~~Sf-~~~~~~~~~----------------------------------------i~~~----------- 104 (169)
T d1x1ra1 77 DGFLIVYSVTDKASF-EHVDRFHQL----------------------------------------ILRV----------- 104 (169)
T ss_dssp SEEEEEEETTCHHHH-HTHHHHHHH----------------------------------------HHHH-----------
T ss_pred cEEEEecccccchhh-hccchhhHH----------------------------------------HHhh-----------
Confidence 999999987654321 112222111 0100
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHhc--CCCeEEEeccccc-cHHHHHHHHHHHh
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLAR--QPNSVVISCNLKL-NLDRLLARMWEEM 287 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~~--~~~~v~iSa~~~~-~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+.+ ....+.+||+++. |++++.+.+.+.+
T Consensus 105 -----------~--~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i 166 (169)
T d1x1ra1 105 -----------K--DRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 166 (169)
T ss_dssp -----------H--TSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred -----------c--cccCccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence 0 1125789999999998653 23333322 2367889999875 9999988877653
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=1.2e-10 Score=93.80 Aligned_cols=151 Identities=17% Similarity=0.171 Sum_probs=92.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|+|||||++.+.+-.- ..+|+.|.-+.....+.+++.. +.+.|++|...... .....++.+|
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~ 76 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQGIF-VEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-------MRDLYMKNGQ 76 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC-CCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-------HHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC-CCccCCccccccceeEEeeeeEEEeccccccCcccccc-------cccccccccc
Confidence 689999999999999999886542 2334444334444455555543 56778877533211 1123456789
Q ss_pred EEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEecC
Q 021103 142 IVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFRE 221 (317)
Q Consensus 142 ~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~sh 221 (317)
.++++.|..+... .+.+..++.. +.+.
T Consensus 77 ~~ilv~d~~~~~s-f~~~~~~~~~----------------------------------------~~~~------------ 103 (167)
T d1c1ya_ 77 GFALVYSITAQST-FNDLQDLREQ----------------------------------------ILRV------------ 103 (167)
T ss_dssp EEEEEEETTCHHH-HHTHHHHHHH----------------------------------------HHHH------------
T ss_pred eeEEeeeccchhh-hHhHHHHHHH----------------------------------------HHHh------------
Confidence 9999998865422 1122222211 0000
Q ss_pred CCChhhHHHHHhcccceeeeeEEEecccCCCh-----hhHHHHh-cC--CCeEEEeccccccHHHHHHHHHHHh
Q 021103 222 DATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI-----DDVDKLA-RQ--PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 222 d~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~-----~~~~~l~-~~--~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
. .....|+++|.||+|+... ++...+. ++ ...+.+||++|.|++++.+.+.+.+
T Consensus 104 -----------~-~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i 165 (167)
T d1c1ya_ 104 -----------K-DTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp -----------H-CCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred -----------c-CCCCCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence 0 1125799999999998743 2222222 22 3466789999999999999887654
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=2.9e-10 Score=91.65 Aligned_cols=151 Identities=21% Similarity=0.221 Sum_probs=91.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccc-eeeeeeEEEEECCe--eEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFT-TLTCIPGIIHYNDT--KIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~t-T~~~~~G~i~~~g~--~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
+++++|.+|+|||||++.+.+.... ..++.| ..+...-.+.+++. .+.++|++|...... -....+..+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~-~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~-------~~~~~~~~~ 76 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFA-ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFAS-------LAPMYYRNA 76 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGG-------GHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCC-ccccccccceeeccccccccccccccccccCCchhHHH-------HHHHHHhcc
Confidence 7999999999999999998866532 222222 22223335566665 467889888532110 112346789
Q ss_pred cEEEEEecCCCchhhHHHHHHHHHHccccccccCCcccccceeeeeeEeeecCCCCCCCHHHHHHHHHHhcccCcEEEec
Q 021103 141 DIVLMVLDASKSEGHRQILTKELEAVGLRLNKRPPQIYFKKKKTGGISFNSTLPLTHVDEKLCYQILHEYKIHNAEVLFR 220 (317)
Q Consensus 141 d~i~~v~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~LS~g~~qr~~ialilDEPt~~LD~~~~~~~l~~l~~~~~~i~~s 220 (317)
|.++++.|..+.... ..+..+... +.
T Consensus 77 ~~~ilv~d~~~~~s~-~~~~~~~~~----------------------------------------~~------------- 102 (170)
T d1ek0a_ 77 QAALVVYDVTKPQSF-IKARHWVKE----------------------------------------LH------------- 102 (170)
T ss_dssp SEEEEEEETTCHHHH-HHHHHHHHH----------------------------------------HH-------------
T ss_pred ceEEEEEeCCcccch-hhhhhhhhh----------------------------------------hc-------------
Confidence 999999988754321 111111110 00
Q ss_pred CCCChhhHHHHHhcccceeeeeEEEecccCCCh--------hhHHHHhc--CCCeEEEeccccccHHHHHHHHHHHhC
Q 021103 221 EDATVDDLIDVIEGNRKYMKCVYVYNKIDVIGI--------DDVDKLAR--QPNSVVISCNLKLNLDRLLARMWEEMG 288 (317)
Q Consensus 221 hd~~~~~~~~~~~~~~~~~p~i~v~NK~D~~~~--------~~~~~l~~--~~~~v~iSa~~~~~i~~l~~~i~~~l~ 288 (317)
.......|.++|.||+|+... ++...+.+ ....+.+||++|.|++++...|.+.++
T Consensus 103 ------------~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~ 168 (170)
T d1ek0a_ 103 ------------EQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp ------------HHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred ------------cccccccceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHhc
Confidence 001124688999999997532 22222322 235678999999999999998877654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.22 E-value=3.6e-10 Score=91.87 Aligned_cols=76 Identities=17% Similarity=0.193 Sum_probs=55.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
-+++++|.+|||||||++.+.+.... .++.|+.+.....+.++|.. +.++||+|-.. .. .++.+
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~~f~--~~~~t~~~~~~~~i~v~~~~~~l~i~Dt~g~~~---------~~---~~~~a 71 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTGSYQ--VLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---------AK---FSGWA 71 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHSCCC--CCCCSSCEEEEEEEEETTEEEEEEEEECSSCCC---------HH---HHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCC--CcCCccceeEEEEeecCceEEEEEEeecccccc---------cc---ccccc
Confidence 58999999999999999998876532 34445555556678888865 56789988432 11 34678
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.++++.|..+.
T Consensus 72 d~~ilVfd~~~~ 83 (175)
T d2bmja1 72 DAVIFVFSLEDE 83 (175)
T ss_dssp SEEEEEEETTCH
T ss_pred ceeEEEeecccc
Confidence 999999987654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.19 E-value=5.2e-10 Score=89.54 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=48.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC--eeEEEecCCCccccccCCchhHHHHHhhhccCc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND--TKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSD 141 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g--~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d 141 (317)
+|+++|.+|||||||++.+.+...+....+.++.....-.+.+.+ ..+.+.|++|....... .....+..+|
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~d 77 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKS------MVQHYYRNVH 77 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTT------THHHHHTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCchhhccc------cceeeecCCC
Confidence 689999999999999999986543211111111111122333433 34567777764321110 1122457899
Q ss_pred EEEEEecCCCc
Q 021103 142 IVLMVLDASKS 152 (317)
Q Consensus 142 ~i~~v~~~~~~ 152 (317)
.++++.|..++
T Consensus 78 ~~ilv~d~~~~ 88 (165)
T d1z06a1 78 AVVFVYDMTNM 88 (165)
T ss_dssp EEEEEEETTCH
T ss_pred ceEEEEEeehh
Confidence 99999998654
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=99.18 E-value=4e-10 Score=97.58 Aligned_cols=98 Identities=23% Similarity=0.283 Sum_probs=69.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCC---------Cc------cccceeeeeeEEEEECCeeEEEecCCCccccccC
Q 021103 64 RVALIGFPSVGKSTLLTLLT---GTHSEA---------AS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~---g~~~~v---------~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 125 (317)
.|||+|..|+|||||+.+|+ |..... .+ .-+.|.......+.|+|..+.++||||..+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF--- 80 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDF--- 80 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGG---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhh---
Confidence 58999999999999999994 433211 11 2355777777788999999999999997652
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCCch-hhHHHHHHHHHHccc
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASKSE-GHRQILTKELEAVGL 168 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~~~-~~~~~~~~~L~~~~l 168 (317)
.......++.+|..++++++.... .....+.+.+...++
T Consensus 81 ----~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~ 120 (267)
T d2dy1a2 81 ----VGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGL 120 (267)
T ss_dssp ----HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTC
T ss_pred ----hhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccc
Confidence 235556778899999999986542 344455556655543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=1.6e-10 Score=96.18 Aligned_cols=80 Identities=25% Similarity=0.318 Sum_probs=53.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEEC---CeeEEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYN---DTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~---g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.|+|+|++|||||||+|.|++..... .+ +|..+..+.+.+. +..+.++|++|.... +.......+..+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~~~~-~~--~t~~~~~~~~~~~~~~~~~~~~~d~~g~~~~------~~~~~~~~~~~~ 72 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQYRD-TQ--TSITDSSAIYKVNNNRGNSLTLIDLPGHESL------RFQLLDRFKSSA 72 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCC-BC--CCCSCEEEEEECSSTTCCEEEEEECCCCHHH------HHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCc-cc--CCeeEEEEEEEEeeeeeeeeeeeeccccccc------cchhhhhhhhhc
Confidence 68999999999999999999865432 23 3444555666653 456788898874221 011122345678
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
+.+++++|....
T Consensus 73 ~~~i~v~D~~d~ 84 (207)
T d2fh5b1 73 RAVVFVVDSAAF 84 (207)
T ss_dssp EEEEEEEETTTH
T ss_pred cccceEEEcccc
Confidence 899999987643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.15 E-value=4.6e-10 Score=91.47 Aligned_cols=82 Identities=20% Similarity=0.255 Sum_probs=52.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCee--EEEecCCCccccccCCchhHHHHHhhhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTK--IQLLDLPGIIEGASEGKGRGRQVIAVSKSS 140 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~--i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 140 (317)
.+|+++|.+|+|||||++.+..-..+ .+|..|..+...-.+.+++.. +.++|++|-..... .....++.+
T Consensus 3 ~KivliG~~~vGKTsli~r~~~~~f~-~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~-------~~~~~~~~~ 74 (179)
T d1m7ba_ 3 CKIVVVGDSQCGKTALLHVFAKDCFP-ENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN-------VRPLSYPDS 74 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCC-SSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTT-------TGGGGCTTC
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCC-CccCCceeecccccccccceEEeeccccccccccccc-------cccchhhhh
Confidence 37899999999999999988765432 333333334444455566654 56789887432111 112345779
Q ss_pred cEEEEEecCCCc
Q 021103 141 DIVLMVLDASKS 152 (317)
Q Consensus 141 d~i~~v~~~~~~ 152 (317)
|.++++.|..+.
T Consensus 75 ~~~ilv~d~~~~ 86 (179)
T d1m7ba_ 75 DAVLICFDISRP 86 (179)
T ss_dssp SEEEEEEETTCH
T ss_pred hhhheeeecccC
Confidence 999999987654
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=99.13 E-value=3.3e-10 Score=95.66 Aligned_cols=83 Identities=22% Similarity=0.200 Sum_probs=54.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC-----------CCccccc----------------------eeeeeeEEEEECCe
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE-----------AASYEFT----------------------TLTCIPGIIHYNDT 109 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~-----------v~~~p~t----------------------T~~~~~G~i~~~g~ 109 (317)
.+++++|..++|||||+++|+..... .+...++ |.+.......+.+.
T Consensus 10 ~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~~~~ 89 (222)
T d1zunb3 10 LRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTAKR 89 (222)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECSSE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEeccce
Confidence 46899999999999999999633211 1122233 33333334455678
Q ss_pred eEEEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 110 KIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 110 ~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.+.++|+||..+. .......+..+|..++++++...
T Consensus 90 ~~~iiD~PGH~df-------v~~~~~g~~~aD~ailVvda~~G 125 (222)
T d1zunb3 90 KFIIADTPGHEQY-------TRNMATGASTCDLAIILVDARYG 125 (222)
T ss_dssp EEEEEECCCSGGG-------HHHHHHHHTTCSEEEEEEETTTC
T ss_pred EEEEEeccchhhh-------hhhhccccccCceEEEEeccccC
Confidence 8999999996442 34555667789999999998654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.11 E-value=2.8e-12 Score=104.19 Aligned_cols=34 Identities=21% Similarity=0.307 Sum_probs=29.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYND 108 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g 108 (317)
+|+|+||||||||||+++|+|...+ ..|.+...+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~-----------~~g~~~~~~ 35 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGK-----------RAIGFWTEE 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG-----------GEEEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCC-----------CcceEEECC
Confidence 6899999999999999999999877 667766544
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=99.09 E-value=9.2e-10 Score=95.60 Aligned_cols=82 Identities=20% Similarity=0.289 Sum_probs=60.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCC---------CCc------cccceeeeeeEEEEECCeeEEEecCCCccccccC
Q 021103 64 RVALIGFPSVGKSTLLTLLT---GTHSE---------AAS------YEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASE 125 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~---g~~~~---------v~~------~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~ 125 (317)
.|||+|..|+|||||..+|+ |.... +.+ .-+.|.......+.|++..+.++||||+.+..
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~-- 85 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT-- 85 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS--
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH--
Confidence 69999999999999999995 33322 111 11556666677889999999999999986543
Q ss_pred CchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 126 GKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 126 ~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
......++.+|..++++++...
T Consensus 86 -----~e~~~~l~~~D~avlVvda~~G 107 (276)
T d2bv3a2 86 -----IEVERSMRVLDGAIVVFDSSQG 107 (276)
T ss_dssp -----TTHHHHHHHCCEEEEEEETTTS
T ss_pred -----HHHHHHHHhhhheEEeccccCC
Confidence 2445566789999999998654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=99.08 E-value=3.2e-10 Score=96.29 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=38.4
Q ss_pred eeeeeEEEecccCCChhhHHHH-----------------------------------hcCCCeEEEeccccccHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDVDKL-----------------------------------ARQPNSVVISCNLKLNLDRLLAR 282 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~~l-----------------------------------~~~~~~v~iSa~~~~~i~~l~~~ 282 (317)
..|.++|+||+|+.+.++.+.+ ....+++++||++|+|+++|.+.
T Consensus 157 ~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~ 236 (244)
T d1yrba1 157 GATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETL 236 (244)
T ss_dssp TSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHH
T ss_pred CCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHH
Confidence 4688999999999976432110 11246899999999999999999
Q ss_pred HHHHh
Q 021103 283 MWEEM 287 (317)
Q Consensus 283 i~~~l 287 (317)
|.+.+
T Consensus 237 l~e~~ 241 (244)
T d1yrba1 237 AYEHY 241 (244)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98853
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.00 E-value=1.7e-09 Score=92.25 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=62.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCCC----------------C------------CccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHSE----------------A------------ASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~~----------------v------------~~~p~tT~~~~~G~i~~~g~~i 111 (317)
-.|+++|..++|||||+..|+ |.... . ....|.|.+.....+.+.++.+
T Consensus 7 iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i 86 (239)
T d1f60a3 7 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQV 86 (239)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEEE
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEEE
Confidence 479999999999999998885 32110 0 1124778888888899999999
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCC
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASK 151 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~ 151 (317)
.++|+||..+ +.......+..+|..++++++..
T Consensus 87 ~iiDtPGH~d-------f~~~~~~g~~~~D~ailvvda~~ 119 (239)
T d1f60a3 87 TVIDAPGHRD-------FIKNMITGTSQADCAILIIAGGV 119 (239)
T ss_dssp EEEECCCCTT-------HHHHHHHSSSCCSEEEEEEECSH
T ss_pred EEEECCCcHH-------HHHHHHHHHHHhCEEEEEEECCC
Confidence 9999999754 23455667788999999998764
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=98.97 E-value=4.8e-10 Score=96.16 Aligned_cols=82 Identities=24% Similarity=0.292 Sum_probs=47.8
Q ss_pred EEEEEcCCCCcHHHHHHHH---hccCC----------------------------CCCccccceeeeeeEEEEECCeeEE
Q 021103 64 RVALIGFPSVGKSTLLTLL---TGTHS----------------------------EAASYEFTTLTCIPGIIHYNDTKIQ 112 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L---~g~~~----------------------------~v~~~p~tT~~~~~G~i~~~g~~i~ 112 (317)
.|+++|..++|||||+..| +|... ......+.|.+.......+.+..+.
T Consensus 26 Ni~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i~ 105 (245)
T d1r5ba3 26 NIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFS 105 (245)
T ss_dssp EEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSEEEE
T ss_pred EEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccceee
Confidence 5999999999999999999 33211 1122345666666667778888999
Q ss_pred EecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 113 LLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 113 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
++|+||.... ..........+|..++++++...
T Consensus 106 ~iDtPGH~df-------~~~~~~g~~~aD~ailVVda~~G 138 (245)
T d1r5ba3 106 LLDAPGHKGY-------VTNMINGASQADIGVLVISARRG 138 (245)
T ss_dssp ECCCCC------------------TTSCSEEEEEEECSTT
T ss_pred eecccccccc-------hhhhhhhhhhhcceeeEEEcCCC
Confidence 9999996442 12344456779999999988653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=5.5e-10 Score=99.62 Aligned_cols=48 Identities=21% Similarity=0.128 Sum_probs=34.3
Q ss_pred eeeEEEecccCCChhhHH-------H-Hh-------cC-CCeEEEeccccccHHHHHHHHHHHh
Q 021103 240 KCVYVYNKIDVIGIDDVD-------K-LA-------RQ-PNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 240 p~i~v~NK~D~~~~~~~~-------~-l~-------~~-~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+-++|+||+|........ . +. .| ++++.+||.+|.|+++|++.|.+..
T Consensus 194 aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~ 257 (327)
T d2p67a1 194 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFK 257 (327)
T ss_dssp CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHH
T ss_pred ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHH
Confidence 447899999988643221 1 11 12 4578899999999999999997643
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.91 E-value=1.6e-09 Score=91.59 Aligned_cols=83 Identities=22% Similarity=0.225 Sum_probs=53.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHh---ccCC----------------------------CCCccccceeeeeeEEEEECCeeE
Q 021103 63 GRVALIGFPSVGKSTLLTLLT---GTHS----------------------------EAASYEFTTLTCIPGIIHYNDTKI 111 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~---g~~~----------------------------~v~~~p~tT~~~~~G~i~~~g~~i 111 (317)
-.||++|.-++|||||+..|+ |... +.....|.|.+.....+.+++..+
T Consensus 4 iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~i 83 (224)
T d1jnya3 4 LNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYFF 83 (224)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCEE
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCcee
Confidence 469999999999999999884 2211 111233556666666777888999
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+. .......+..+|..++++++...
T Consensus 84 ~iiDtPGH~df-------~~~~~~g~~~~D~allVVda~~G 117 (224)
T d1jnya3 84 TIIDAPGHRDF-------VKNMITGASQADAAILVVSAKKG 117 (224)
T ss_dssp EECCCSSSTTH-------HHHHHHTSSCCSEEEEEEECSTT
T ss_pred EEeeCCCcHHH-------HHHHHHHHHhhceEEEEEecccC
Confidence 99999996442 23455667789999999998754
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=98.90 E-value=5.1e-10 Score=97.52 Aligned_cols=58 Identities=31% Similarity=0.405 Sum_probs=38.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+.+++++|.||+|||||+|+|.|... .+++.||+|++... +.. +.++.++||||+...
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~--i~~-~~~~~l~DTPGi~~p 170 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQW--VKV-GKELELLDTPGILWP 170 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC------------CC--EEE-TTTEEEEECCCCCCS
T ss_pred ceEEEEEecCccchhhhhhhhhccceEEECCcccccccceE--EEC-CCCeEEecCCCcccc
Confidence 45799999999999999999999886 49999999998753 444 677999999998754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=98.81 E-value=2.4e-08 Score=88.66 Aligned_cols=48 Identities=25% Similarity=0.138 Sum_probs=35.0
Q ss_pred eeeEEEecccCCChhhHH-H--------Hh--------cCCCeEEEeccccccHHHHHHHHHHHh
Q 021103 240 KCVYVYNKIDVIGIDDVD-K--------LA--------RQPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 240 p~i~v~NK~D~~~~~~~~-~--------l~--------~~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
+=++|+||+|+.+.+... . +. -.++++.+||.++.|+++|++.|.+..
T Consensus 191 aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~ 255 (323)
T d2qm8a1 191 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 255 (323)
T ss_dssp CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred hheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHH
Confidence 348899999987654321 1 11 125689999999999999999997654
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.78 E-value=9.6e-09 Score=84.25 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=48.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-++.|+|.+|||||||++.+.-.... -.|.......+.+.+..+..+|++|....... .....+.++.
T Consensus 3 iKivllG~~~vGKTsll~r~~f~~~~-----~pTiG~~~~~~~~~~~~~~~~D~~gq~~~~~~-------~~~~~~~~~~ 70 (200)
T d1zcba2 3 VKILLLGAGESGKSTFLKQMRIIHGQ-----DPTKGIHEYDFEIKNVPFKMVDVGGQRSERKR-------WFECFDSVTS 70 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSC-----CCCSSEEEEEEEETTEEEEEEEECC--------------CTTSCTTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCC-----CCeeeeEEEEEeeeeeeeeeecccceeeeccc-------ccccccccce
Confidence 47999999999999999999422211 12444455567888889999999986432211 1123455777
Q ss_pred EEEEecCC
Q 021103 143 VLMVLDAS 150 (317)
Q Consensus 143 i~~v~~~~ 150 (317)
+.++.+..
T Consensus 71 ~~~~~~~~ 78 (200)
T d1zcba2 71 ILFLVSSS 78 (200)
T ss_dssp EEEEEETT
T ss_pred eEEEEEcC
Confidence 77776654
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.66 E-value=6.5e-08 Score=78.88 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-++.++|..|||||||++.+...... . -.|.....-.+......+...|+.|...... .....++.++.
T Consensus 3 ~Kiv~lG~~~vGKTsll~r~~~~~~~--~--~pTiG~~~~~~~~~~~~~~~~d~~g~~~~~~-------~~~~~~~~~~~ 71 (200)
T d2bcjq2 3 LKLLLLGTGESGKSTFIKQMRIIHGS--G--VPTTGIIEYPFDLQSVIFRMVDVGGQRSERR-------KWIHCFENVTS 71 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTSS--C--CCCCSCEEEEEECSSCEEEEEECCCSTTGGG-------GGGGGCSSCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCC--C--CceeeEEEEEEeccceeeeeccccccccccc-------cccccccccce
Confidence 37899999999999999999765432 1 1233333335556677788999988533211 12233466788
Q ss_pred EEEEecCC
Q 021103 143 VLMVLDAS 150 (317)
Q Consensus 143 i~~v~~~~ 150 (317)
++++.+..
T Consensus 72 ~i~~~~~~ 79 (200)
T d2bcjq2 72 IMFLVALS 79 (200)
T ss_dssp EEEEEEGG
T ss_pred eeEeeecc
Confidence 88777654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.7e-07 Score=75.91 Aligned_cols=74 Identities=16% Similarity=0.275 Sum_probs=50.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-+++|+|..|+|||||++.+.....| |.....-.+.+.+..+.+.|+.|-.... ......++.++.
T Consensus 3 ~KivllG~~~vGKTsl~~r~~~~~~~-------t~~~~~~~~~~~~~~~~i~D~~Gq~~~~-------~~~~~~~~~~~~ 68 (195)
T d1svsa1 3 VKLLLLGAGESGKSTIVKQMKIIHEA-------GTGIVETHFTFKDLHFKMFDVGGQRSER-------KKWIHCFEGVTA 68 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHSC-------CCSEEEEEEEETTEEEEEEEECCSGGGG-------GGGGGGCTTCSE
T ss_pred eEEEEECCCCCCHHHHHHHHhhCCCC-------CccEEEEEEEeeeeeeeeeccccccccc-------cchhhcccCCce
Confidence 47999999999999999998755433 1112233566778888999998843211 112234567888
Q ss_pred EEEEecCC
Q 021103 143 VLMVLDAS 150 (317)
Q Consensus 143 i~~v~~~~ 150 (317)
++++.+..
T Consensus 69 ~i~v~d~~ 76 (195)
T d1svsa1 69 IIFCVALS 76 (195)
T ss_dssp EEEEEEGG
T ss_pred eeeEEeec
Confidence 88887753
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=2.8e-07 Score=82.01 Aligned_cols=82 Identities=28% Similarity=0.306 Sum_probs=55.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh---ccCCCC-------------CccccceeeeeeEEEEE----------------CCeeE
Q 021103 64 RVALIGFPSVGKSTLLTLLT---GTHSEA-------------ASYEFTTLTCIPGIIHY----------------NDTKI 111 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~---g~~~~v-------------~~~p~tT~~~~~G~i~~----------------~g~~i 111 (317)
.|||+|..++|||||+.+|. |..... .-..+.|.......+.+ ++..+
T Consensus 19 NI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i 98 (341)
T d1n0ua2 19 NMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLI 98 (341)
T ss_dssp EEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccceEE
Confidence 49999999999999999995 432210 01124555555555544 23458
Q ss_pred EEecCCCccccccCCchhHHHHHhhhccCcEEEEEecCCCc
Q 021103 112 QLLDLPGIIEGASEGKGRGRQVIAVSKSSDIVLMVLDASKS 152 (317)
Q Consensus 112 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~i~~v~~~~~~ 152 (317)
.++||||..+-. .+....++.+|..++++|+...
T Consensus 99 nliDtPGh~dF~-------~ev~~al~~~D~allVVda~eG 132 (341)
T d1n0ua2 99 NLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 132 (341)
T ss_dssp EEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred EEEcCCCcHHHH-------HHHHHHHhhcCceEEEEecccC
Confidence 899999975532 3555667889999999998654
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.43 E-value=2.6e-07 Score=77.30 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=51.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEECCeeEEEecCCCccccccCCchhHHHHHhhhccCcE
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHYNDTKIQLLDLPGIIEGASEGKGRGRQVIAVSKSSDI 142 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~~g~~i~~~d~~g~~~~~~~~~~~~~~~~~~~~~~d~ 142 (317)
-+|.|+|.+|||||||++.+..... -.|.....-.+.+++..+...|+.|-..... .....++.++.
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~------~pTiG~~~~~~~~~~~~~~~~D~~Gq~~~r~-------~w~~~~~~~~~ 73 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHV------VLTSGIFETKFQVDKVNFHMFDVGGQRDERR-------KWIQCFNDVTA 73 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHC------CCCCSCEEEEEEETTEEEEEEECCCSTTTTT-------GGGGGCTTCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCc------CCCCCeEEEEEEECcEEEEEEecCccceecc-------chhhhcccccc
Confidence 4799999999999999999853321 1244444456778899999999988543221 11223467888
Q ss_pred EEEEecCC
Q 021103 143 VLMVLDAS 150 (317)
Q Consensus 143 i~~v~~~~ 150 (317)
++++.+..
T Consensus 74 ii~v~d~s 81 (221)
T d1azta2 74 IIFVVASS 81 (221)
T ss_dssp EEEEEETT
T ss_pred eEEEEEcc
Confidence 88888764
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=1e-06 Score=76.72 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=29.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeeee
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTCI 100 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~~ 100 (317)
..++++|.-+||||||+|+|+|... |++.-| ||+-|+
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~-~T~~~~ 64 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI-VTRRPL 64 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC-SCSSCE
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc-cccCCE
Confidence 4799999999999999999999874 655544 555544
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=1.2e-07 Score=79.34 Aligned_cols=59 Identities=22% Similarity=0.280 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC-C---CCccc----cceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS-E---AASYE----FTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~-~---v~~~p----~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
.|...+++|++|+|||||+|+|.+... . ++..- .||+... -+.+.+ .-.++||||+...
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~--l~~l~~-gg~iiDTPG~r~~ 160 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLKFDF-GGYVVDTPGFANL 160 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEECTT-SCEEESSCSSTTC
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCcccccee--EEEECC-CcEEEeCCccccc
Confidence 378999999999999999999998642 2 33322 3555442 233321 2357899999654
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.33 E-value=1.3e-06 Score=76.49 Aligned_cols=36 Identities=25% Similarity=0.258 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC-CCCccccceeee
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS-EAASYEFTTLTC 99 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~-~v~~~p~tT~~~ 99 (317)
..++++|.-++|||||+|+|+|... |++.-| ||+.|
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~~lP~~~~~-~T~~~ 61 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRDFLPRGSGI-VTRRP 61 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSCCCCC---------C
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCCCCCCCCCc-cccCC
Confidence 4799999999999999999999875 555433 34434
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=98.10 E-value=2.2e-07 Score=77.96 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC----CCCccc----cceeeeeeEEEEECCeeEEEecCCCcccc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS----EAASYE----FTTLTCIPGIIHYNDTKIQLLDLPGIIEG 122 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~----~v~~~p----~tT~~~~~G~i~~~g~~i~~~d~~g~~~~ 122 (317)
+...+++|++|+|||||+|+|.+... .++..- .||+... -+..+|- .++||||+...
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~--l~~~~gg--~iiDTPG~r~~ 161 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHTSGG--LVADTPGFSSL 161 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEETTE--EEESSCSCSSC
T ss_pred cceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEE--EEecCCC--EEEECCccccc
Confidence 67889999999999999999998742 244332 2554432 2345553 47899999654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.92 E-value=1.7e-06 Score=69.74 Aligned_cols=42 Identities=33% Similarity=0.260 Sum_probs=33.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC-CCccccceeeeeeEE
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE-AASYEFTTLTCIPGI 103 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~-v~~~p~tT~~~~~G~ 103 (317)
|..++|+||+|||||||++.|....+. .-..+.|||.|..|.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e 44 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE 44 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccc
Confidence 678999999999999999999876543 234567888887664
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=4.1e-06 Score=69.04 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=38.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCCC---CCccccceeeeeeEEEEECCeeEEEe
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHSE---AASYEFTTLTCIPGIIHYNDTKIQLL 114 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~~---v~~~p~tT~~~~~G~i~~~g~~i~~~ 114 (317)
|..++|+||+|||||||++.|.-..+. ....+.|||.|-.|++ +|.+..++
T Consensus 2 G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~--~G~dY~Fv 55 (205)
T d1s96a_ 2 GTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEV--HGEHYFFV 55 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCC--BTTTBEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCcccc--ccccceee
Confidence 678999999999999999999876542 2346789999988864 35554444
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=7.8e-06 Score=66.05 Aligned_cols=48 Identities=29% Similarity=0.304 Sum_probs=35.6
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEEe
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLL 114 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~~ 114 (317)
|+|+||+|||||||.+.|+...+. ....+.||+-|..|++ +|.+..++
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~--~g~dy~fv 53 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFV 53 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCC--BTTTEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCc--CCccceec
Confidence 789999999999999999876542 3446788888877754 35444443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.57 E-value=1.6e-05 Score=62.26 Aligned_cols=24 Identities=29% Similarity=0.373 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|+|++|||||||++.|....
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l 26 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPAL 26 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998654
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=1.6e-05 Score=63.76 Aligned_cols=50 Identities=20% Similarity=0.214 Sum_probs=34.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEEEECCeeEEEe
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGIIHYNDTKIQLL 114 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i~~~g~~i~~~ 114 (317)
..++|+||+|+|||||++.|....+. ....+.||+-|..|++ +|.+..++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~--~G~dY~Fv 55 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEE--NGKNYYFV 55 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CC--BTTTBEEC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccc--cCccceee
Confidence 46899999999999999999865532 3446789999887754 35554444
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.45 E-value=1.6e-05 Score=64.39 Aligned_cols=40 Identities=43% Similarity=0.376 Sum_probs=32.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccCCC--CCccccceeeeeeEEE
Q 021103 65 VALIGFPSVGKSTLLTLLTGTHSE--AASYEFTTLTCIPGII 104 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~~~--v~~~p~tT~~~~~G~i 104 (317)
|+|+||+|||||||.+.|....+. ....+.||+.+..|+.
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~ 44 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEE 44 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCc
Confidence 779999999999999999866542 3457788988877743
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.42 E-value=2.7e-05 Score=61.52 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|+|++|||||||.+.|+...
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999765
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.42 E-value=0.00013 Score=60.04 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
....++++||||+||||.+-.|+-.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999998877744
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.42 E-value=0.0001 Score=60.48 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
..+++++||+|+||||.+-.|+..
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~ 32 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQ 32 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999888744
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.36 E-value=3.7e-05 Score=60.41 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.++|+|++|||||||++.|...+.
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987654
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.34 E-value=0.00028 Score=57.63 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+..++++||+||||||.+-.|+...
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999987777543
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.34 E-value=0.0004 Score=59.38 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=39.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeeeeEEEEE-------CCeeEEEecCCCcccc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCIPGIIHY-------NDTKIQLLDLPGIIEG 122 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~~G~i~~-------~g~~i~~~d~~g~~~~ 122 (317)
..|+|+|+.++|||||+|.|.|...-.. .-.++...+.|...| .+..+.++||.|+...
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~~~f~-~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~~ 98 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKKKGFS-LGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDV 98 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCSSCSC-CCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCG
T ss_pred EEEEEECCCCCCHHHHHHHHcCCCCCCc-cCCCCCCCCCceEEEEeeccCCCCceEEEEeccccccc
Confidence 4799999999999999999998763211 111122234554433 2345788999998653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.30 E-value=6.4e-05 Score=59.01 Aligned_cols=26 Identities=35% Similarity=0.474 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|..|+|.|+|||||||+.+.|....
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998765
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.28 E-value=0.00034 Score=57.14 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
..++++||||+||||.+-.|+..
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999888743
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.26 E-value=7.4e-05 Score=58.57 Aligned_cols=26 Identities=15% Similarity=0.371 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..|+|.|+|||||||+.+.|+...
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998664
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.24 E-value=0.00015 Score=57.79 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
-.|||-|++|||||||.+.|....
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998654
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.22 E-value=7e-05 Score=58.52 Aligned_cols=24 Identities=38% Similarity=0.493 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|+|+|||||||+.+.|+-.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.15 E-value=8.4e-05 Score=58.45 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|.|.||||+|||||++.++....
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~ 26 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999999999997764
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.12 E-value=0.00013 Score=58.53 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|.+++|+|||||||||+-+.|+...
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.10 E-value=0.00013 Score=57.50 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+|.|++||||||+.+.|+..+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l 25 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNL 25 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999998654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.10 E-value=0.00012 Score=57.18 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+..+.|.|+|||||||+.+.|+...
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.08 E-value=0.00013 Score=55.88 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=19.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
..|.|.|+||||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 36889999999999999988643
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.05 E-value=0.00015 Score=56.78 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..|.|+|+|||||||+-++|+..+
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999998665
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.05 E-value=5.2e-05 Score=68.20 Aligned_cols=57 Identities=11% Similarity=-0.023 Sum_probs=43.8
Q ss_pred CCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccC-cEEEecCCCChhhHHH
Q 021103 174 PPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHN-AEVLFREDATVDDLID 230 (317)
Q Consensus 174 ~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~-~~i~~shd~~~~~~~~ 230 (317)
...+||||+.++.+| +++|||+++||+.....+.+.+. ..+ -+|++||++.+.+.+|
T Consensus 330 ~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad 403 (427)
T d1w1wa_ 330 MEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSD 403 (427)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCS
T ss_pred hhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcc
Confidence 467899999987765 78899999999998766655553 333 5899999987766544
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.01 E-value=0.00016 Score=56.18 Aligned_cols=24 Identities=29% Similarity=0.256 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|.|.|+|||||||+.+.|+....
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999997653
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.97 E-value=0.00018 Score=58.14 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..|+++|.||||||||.+.|+...
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=96.97 E-value=0.00019 Score=57.64 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+|+|+|||||||||+.+.|+..+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.96 E-value=0.00019 Score=56.78 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|.|+|+|||||||+.+.|+...
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999997654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.00019 Score=55.07 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|.|+|++||||||+-+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=0.00075 Score=57.41 Aligned_cols=50 Identities=14% Similarity=0.106 Sum_probs=38.0
Q ss_pred eeeeeEEEecccCCChhh----HHHHhc-CCCeEEEeccccccHHHHHHHHHHHh
Q 021103 238 YMKCVYVYNKIDVIGIDD----VDKLAR-QPNSVVISCNLKLNLDRLLARMWEEM 287 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~----~~~l~~-~~~~v~iSa~~~~~i~~l~~~i~~~l 287 (317)
.+|+|+|+||+|+.+.+. .+++.. ....+++|+.++.+...+.+.+.+.+
T Consensus 42 ~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l 96 (273)
T d1puja_ 42 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEIL 96 (273)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred CCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhh
Confidence 489999999999997653 333332 45688999999998888877776554
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.85 E-value=0.00029 Score=54.89 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
...|.|.|++||||||+.+.|+....
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35788999999999999999998764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=96.84 E-value=0.00026 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+|.|+|||||||||+.+.|+...
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998554
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.82 E-value=0.00028 Score=56.02 Aligned_cols=23 Identities=26% Similarity=0.498 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|.|+|+|||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998654
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0012 Score=54.29 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=39.2
Q ss_pred eeeeeEEEecccCCChhhHHHH---h----cCCCeEEEeccccccHHHHHHHHHHHhCeeEEEe
Q 021103 238 YMKCVYVYNKIDVIGIDDVDKL---A----RQPNSVVISCNLKLNLDRLLARMWEEMGLVRVYT 294 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~~l---~----~~~~~v~iSa~~~~~i~~l~~~i~~~l~~~~~~~ 294 (317)
..|.++|+||+|+.+.++.+.+ . ....++.+|++++.|++.|.+.+. +...++.
T Consensus 41 ~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l~---~kt~~~~ 101 (225)
T d1u0la2 41 ELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK---GKISTMA 101 (225)
T ss_dssp TCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS---SSEEEEE
T ss_pred CCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHhhHHHHhc---CCeEEEE
Confidence 4788999999999987654322 1 124688999999999999988763 3344444
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.00027 Score=55.23 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
++|+|+|++||||||+-+.|+..+
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998665
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.79 E-value=0.00071 Score=56.68 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.-+.|.||||||||||.++|++...
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998763
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.00026 Score=60.82 Aligned_cols=58 Identities=12% Similarity=0.077 Sum_probs=44.4
Q ss_pred cCCcccccceeeeeeE-------------eeecCCCCCCCHHHHHHHHHHhc---ccCcEEEecCCCChhhHHH
Q 021103 173 RPPQIYFKKKKTGGIS-------------FNSTLPLTHVDEKLCYQILHEYK---IHNAEVLFREDATVDDLID 230 (317)
Q Consensus 173 ~~~~LS~g~~qr~~ia-------------lilDEPt~~LD~~~~~~~l~~l~---~~~~~i~~shd~~~~~~~~ 230 (317)
....+|.|+++...++ ++.|||-++|+|.....+++.+. ...-+|++||.+.+-+.+|
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d 289 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAAD 289 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCS
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcc
Confidence 3567899998876554 67799999999999777766664 2337899999988766544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.77 E-value=0.00033 Score=56.27 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
+.+|.|+|||||||||+.+.|+...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998654
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=9.1e-05 Score=59.12 Aligned_cols=30 Identities=20% Similarity=0.043 Sum_probs=23.1
Q ss_pred cEEEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 55 FEVTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 55 ~~~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.+++..+ ...+|+|+|||||||+|.+|.-.
T Consensus 18 ~~i~f~~-~~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 18 RTFDLDE-LVTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEECHHH-HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEEcCC-CeEEEECCCCCCHHHHHHHHHHH
Confidence 3444433 37889999999999999999743
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=96.76 E-value=0.00032 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|+|++||||||+-++|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998765
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.75 E-value=0.003 Score=51.93 Aligned_cols=39 Identities=0% Similarity=-0.217 Sum_probs=29.2
Q ss_pred eeecCCCCCCCHHH----HHHHHHHhcccC-cEEEecCCCChhh
Q 021103 189 FNSTLPLTHVDEKL----CYQILHEYKIHN-AEVLFREDATVDD 227 (317)
Q Consensus 189 lilDEPt~~LD~~~----~~~~l~~l~~~~-~~i~~shd~~~~~ 227 (317)
+++||...|-++.. ...+++.+...+ ..+++||..++..
T Consensus 118 vliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 118 VLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp EEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred EeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 68899999999875 556677776444 7899999865543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.73 E-value=0.00037 Score=55.96 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+++|+|||||||||+-+.|+-..
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.00037 Score=55.92 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+++|+|||||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998765
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.72 E-value=0.00036 Score=55.13 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|+|||||||||..+.|+-..
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00022 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
|..|.|+|+|||||||+-+.|+-..
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.70 E-value=0.00041 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
+|+|+|||||||||+-+.|+...
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998554
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.00042 Score=55.45 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|+|||||||||..+.|+..+
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00046 Score=61.70 Aligned_cols=27 Identities=22% Similarity=0.253 Sum_probs=22.0
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
+....+...+|+|+|||||||+|.+|.
T Consensus 20 i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 20 VGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 444434578999999999999999984
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.68 E-value=0.00043 Score=54.88 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|.|+|||||||||+.+.|+...
T Consensus 3 mrIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 3 IRMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 478899999999999999998653
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0051 Score=50.83 Aligned_cols=44 Identities=2% Similarity=-0.182 Sum_probs=29.9
Q ss_pred EeeecCCCCCCCHHH----HHHHHHHhcc-cC-cEEEecCCCChhhHHHH
Q 021103 188 SFNSTLPLTHVDEKL----CYQILHEYKI-HN-AEVLFREDATVDDLIDV 231 (317)
Q Consensus 188 alilDEPt~~LD~~~----~~~~l~~l~~-~~-~~i~~shd~~~~~~~~~ 231 (317)
.+++||+..|-++.. ...+++.+.. .+ ..+++||...+......
T Consensus 123 LvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~~~~~ 172 (234)
T d1wb9a2 123 LVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK 172 (234)
T ss_dssp EEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred EEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHhhhhhc
Confidence 378899999888665 3455666643 33 57888888766665543
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.64 E-value=0.00051 Score=59.99 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
.+.|.|++|||||||+|+|++..++
T Consensus 168 nili~G~tgSGKTT~l~al~~~i~~ 192 (323)
T d1g6oa_ 168 NVIVCGGTGSGKTTYIKSIMEFIPK 192 (323)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CEEEEeeccccchHHHHHHhhhccc
Confidence 4899999999999999999998765
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.60 E-value=0.00057 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~ 85 (317)
...|.++|+|||||||+.+.++..
T Consensus 14 p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 14 PEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp CCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 568999999999999999988643
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.57 E-value=0.00053 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999987653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=96.49 E-value=0.00062 Score=53.36 Aligned_cols=23 Identities=17% Similarity=0.226 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|.|+|++||||||+-+.|+..+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.32 E-value=0.00093 Score=54.23 Aligned_cols=24 Identities=17% Similarity=0.123 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
-.|||-|++|||||||-+.|....
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999997655
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.00097 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+|+|.|||||||||+-+.|+..+.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4899999999999999999997653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0044 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.400 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|.||||+||||+.++|+....
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998753
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.13 E-value=0.005 Score=55.79 Aligned_cols=34 Identities=21% Similarity=0.322 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCCCCccccceeeee
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSEAASYEFTTLTCI 100 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~v~~~p~tT~~~~ 100 (317)
..|.+|||+|||||-|.++|++.. +.||+..|.+
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l----~VPFv~~daT 83 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLA----NAPFIKVEAT 83 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT----TCCEEEEEGG
T ss_pred ccEEEECCCCCCHHHHHHHHHHHh----CCCEEEeecc
Confidence 469999999999999999999876 3466555543
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0016 Score=55.08 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|||+||+|||+++..|+...
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999998654
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.09 E-value=0.0013 Score=54.35 Aligned_cols=23 Identities=30% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.+.||||+|||||.+++++..
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47799999999999999999865
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.03 E-value=0.0016 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+|+|-|||||||||+-+.|+..+
T Consensus 4 i~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 4 IQIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999765
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.92 E-value=0.0018 Score=51.39 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
.+|||.|++||||||+.+.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999853
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0021 Score=52.88 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.+.+.||||+||||+.++|+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~ 60 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQ 60 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHhccC
Confidence 478999999999999999997754
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.80 E-value=0.0022 Score=51.04 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|-|..||||||+++.|....
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.73 E-value=0.0023 Score=55.24 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.-+.++||||||||+|.++|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 347899999999999999999864
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0029 Score=51.11 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
|..|+|-|+.||||||+++.|...+
T Consensus 2 gkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 2 SKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.71 E-value=0.0024 Score=52.23 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||||+|||||.++|+...
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.71 E-value=0.0023 Score=53.46 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.|.||||+|||+|.++|++..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 48899999999999999999764
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.68 E-value=0.0036 Score=49.77 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=22.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
..|..+.|.|+||+|||||...++..
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35889999999999999999877654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.63 E-value=0.0026 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.178 Sum_probs=17.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+++++||+||||||.+-.|+-..
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999998887543
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.59 E-value=0.0034 Score=51.99 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
..+.|.||+|+||||+++.|+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999997654
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0034 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.216 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|..|+|-|+.||||||+.+.|...+
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998765
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.58 E-value=0.0034 Score=50.92 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
|..|-|.|.||||||||-+.|...+
T Consensus 24 g~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 24 GLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999997544
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.50 E-value=0.0035 Score=52.03 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.|.|++|+|||||++.++...
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHC
Confidence 468899999999999999887544
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.47 E-value=0.003 Score=52.71 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.|.||||+|||+|.++|++..
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999765
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.37 E-value=0.004 Score=50.19 Aligned_cols=21 Identities=38% Similarity=0.374 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~ 83 (317)
-.|||.|..||||||+.+.|.
T Consensus 3 ~iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 3 YIVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEEECSTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999886
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.35 E-value=0.0036 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.-+.|.||||+|||+|.++|+...
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 358899999999999999999765
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.0036 Score=51.22 Aligned_cols=26 Identities=23% Similarity=0.362 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
...|+|-|+-||||||+++.|...+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999997653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.31 E-value=0.004 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||+|+|||||.++++...
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHH
Confidence 37899999999999999999764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=95.28 E-value=0.0045 Score=50.00 Aligned_cols=20 Identities=40% Similarity=0.368 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 021103 64 RVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~ 83 (317)
.|||.|.+||||||..+.|.
T Consensus 5 iIgitG~igSGKStv~~~l~ 24 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA 24 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH
Confidence 79999999999999999986
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.23 E-value=0.003 Score=52.72 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||||+||||++++++...
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999999765
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.23 E-value=0.0042 Score=52.07 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.|.||||+|||+|.++++...
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999875
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.16 E-value=0.0048 Score=50.79 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=32.8
Q ss_pred eeeeeEEEecccCCChhhHH----HH---hc--CCCeEEEeccccccHHHHHHHH
Q 021103 238 YMKCVYVYNKIDVIGIDDVD----KL---AR--QPNSVVISCNLKLNLDRLLARM 283 (317)
Q Consensus 238 ~~p~i~v~NK~D~~~~~~~~----~l---~~--~~~~v~iSa~~~~~i~~l~~~i 283 (317)
..+.++|+||+|+...++.+ .+ +. ..+++.+|++++.|+++|.+.+
T Consensus 41 ~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l 95 (231)
T d1t9ha2 41 DIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF 95 (231)
T ss_dssp TCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred CCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence 46788999999998754322 11 11 2578889999999888877654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.014 Score=50.17 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+.++||+|+|||.|.+.|+...
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCcchhHHHHHHHHhhc
Confidence 368899999999999999999764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.07 E-value=0.0058 Score=48.84 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=94.98 E-value=0.0031 Score=54.85 Aligned_cols=26 Identities=35% Similarity=0.409 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
..+.|+|+||+|||||.++|++.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35899999999999999999987754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.95 E-value=0.0061 Score=52.45 Aligned_cols=26 Identities=31% Similarity=0.287 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.-.|||.|++|||||||-+.|...+.
T Consensus 80 P~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 35899999999999999999987653
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.91 E-value=0.0049 Score=51.86 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhccCC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~~ 87 (317)
-+.|.||||+|||+|.++|++...
T Consensus 43 giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 43 GVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp EEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCcchhHHHHHHHHhC
Confidence 488999999999999999998863
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.89 E-value=0.0076 Score=48.90 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
.|..|+|=|+-||||||+.+.|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999986654
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.85 E-value=0.0065 Score=49.35 Aligned_cols=23 Identities=26% Similarity=0.502 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||+|+||||+.++++...
T Consensus 38 ~~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 38 HMIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCchhhHHHHHHHH
Confidence 37799999999999999998664
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.83 E-value=0.0059 Score=50.28 Aligned_cols=23 Identities=26% Similarity=0.218 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||+|+||||+.++++...
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999998754
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0089 Score=48.54 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..|..+.|.|+||+|||||...++-
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3588999999999999999977753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.65 E-value=0.0078 Score=48.85 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.|.||+|+||||+.++|+...
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.63 E-value=0.0087 Score=50.86 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
-.|||-|++|||||||.+.|.-.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHHHH
Confidence 58999999999999999887644
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.55 E-value=0.0051 Score=52.34 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=18.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..+|||.|++||||||+.++|....
T Consensus 4 ~pIIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 4 HPIISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH
Confidence 3589999999999999999987654
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.48 E-value=0.041 Score=42.20 Aligned_cols=51 Identities=24% Similarity=0.128 Sum_probs=33.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccCC---CCCccccceeeeeeEEEEECCeeEEEecC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTHS---EAASYEFTTLTCIPGIIHYNDTKIQLLDL 116 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~~---~v~~~p~tT~~~~~G~i~~~g~~i~~~d~ 116 (317)
|..|+|-|+=|||||||.+.++.... .|++--|+-.... ..++..+.-+|.
T Consensus 33 g~ii~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~~Y----~~~~~~i~H~Dl 86 (158)
T d1htwa_ 33 AIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEY----NIAGKMIYHFDL 86 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEE----EETTEEEEEEEC
T ss_pred CeEEEEecCCCccHHHHHHHHHhhcccccccCCCceEEEEee----ccCCceEEEEEE
Confidence 67899999999999999999986553 2433334333322 233455555564
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0085 Score=48.94 Aligned_cols=23 Identities=35% Similarity=0.494 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~ 85 (317)
..+.|.|.-|||||||+|.|...
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 46889999999999999999864
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.31 E-value=0.014 Score=47.55 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=22.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
..|..+.|.|+||+|||||...++-.
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 34889999999999999999777644
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.014 Score=46.55 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|||+||+|||+++..|+...
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.14 E-value=0.012 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...+.+.||||+|||||.++|++..
T Consensus 154 ~~~~~~~g~~~~gk~~~~~~~~~~~ 178 (362)
T d1svma_ 154 KRYWLFKGPIDSGKTTLAAALLELC 178 (362)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4579999999999999999999875
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.95 E-value=0.016 Score=48.41 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=21.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~ 83 (317)
.+|+.+.|.|+||+|||||+..|+
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 458999999999999999987776
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.94 E-value=0.017 Score=47.11 Aligned_cols=24 Identities=21% Similarity=0.176 Sum_probs=20.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~ 83 (317)
..|..+.|.|+||+|||||.-.++
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHH
Confidence 348899999999999999976554
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.94 E-value=0.0065 Score=51.61 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q 021103 63 GRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g 84 (317)
...+|+|+|||||||+|.+|.-
T Consensus 25 ~lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 25 RVTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 3789999999999999999843
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.84 E-value=0.017 Score=47.14 Aligned_cols=25 Identities=44% Similarity=0.522 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...|+|=|.-||||||+++.|....
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999999999998654
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.013 Score=49.82 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=25.1
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+.+..|.+++|+|++|+|||||+..|+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 45566899999999999999999998864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.79 E-value=0.019 Score=46.40 Aligned_cols=25 Identities=12% Similarity=0.118 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..|..+.|.|+||+|||||.-.++-
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4588999999999999999877763
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.75 E-value=0.0082 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|||+||+|||+++.-|+...
T Consensus 45 n~llvG~~GvGKtaiv~~la~~i 67 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999998777543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.70 E-value=0.022 Score=45.80 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=20.6
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 59 KFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 59 ~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
+..|..+.|.|+||+|||+|.-.++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3458999999999999999975443
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.53 E-value=0.02 Score=46.81 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcc
Q 021103 64 RVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~ 85 (317)
+|||.|..||||||..+.|...
T Consensus 3 iIgiTG~igSGKsTva~~l~e~ 24 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSN 24 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 6999999999999999999643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.32 E-value=0.021 Score=50.79 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
...+.+.||+||||||++.++....
T Consensus 158 ~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 158 HGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hceEEEEcCCCCCccHHHHHHhhhh
Confidence 3469999999999999999998765
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.31 E-value=0.039 Score=43.15 Aligned_cols=24 Identities=29% Similarity=0.116 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g 84 (317)
.|.=|.|.|++|+|||||.-.|..
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 467799999999999999877764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.027 Score=45.77 Aligned_cols=25 Identities=20% Similarity=0.050 Sum_probs=21.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 60 FGHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 60 ~~g~~valiG~ngaGKSTLln~L~g 84 (317)
..|..+.|.|+||+|||||.-.++.
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999877763
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.99 E-value=0.043 Score=42.91 Aligned_cols=24 Identities=29% Similarity=0.137 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g 84 (317)
.|.=+.|.|++|+|||||.-.|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 467799999999999999987764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.68 E-value=0.028 Score=48.39 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.++||||+|||.|.++|++..
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 35557999999999999999875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=92.63 E-value=0.053 Score=42.06 Aligned_cols=24 Identities=25% Similarity=0.117 Sum_probs=20.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g 84 (317)
.|.=|.|.|++|+|||||.-.|..
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 467899999999999999866653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.63 E-value=0.033 Score=46.16 Aligned_cols=24 Identities=29% Similarity=0.198 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g 84 (317)
+|..+.|.|++|+|||||+-.|+-
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 378899999999999999977764
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=92.37 E-value=0.026 Score=45.11 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.+.||+++|||++.++|+...
T Consensus 55 ~i~~~GP~~TGKS~f~~sl~~~l 77 (205)
T d1tuea_ 55 CLVFCGPANTGKSYFGMSFIHFI 77 (205)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHHHh
Confidence 79999999999999999998775
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=92.25 E-value=0.1 Score=44.61 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.++||+|+|||.|.+.|+...
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 57899999999999999998764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.22 E-value=0.035 Score=44.76 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=20.0
Q ss_pred EEEEcCCCCcHHHHHHHHhccC
Q 021103 65 VALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 65 valiG~ngaGKSTLln~L~g~~ 86 (317)
+.|.|++|+|||-|+++++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6799999999999999998765
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.74 E-value=0.042 Score=45.96 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 62 HGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.-.+.|.||+++|||||+++|+...
T Consensus 104 ~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 104 RNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3478899999999999999999876
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=91.42 E-value=0.052 Score=45.51 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
..++|.|..|.|||||.+.+....
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~~~ 68 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALSKS 68 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999987543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=90.97 E-value=0.06 Score=46.46 Aligned_cols=25 Identities=24% Similarity=0.196 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHS 87 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~ 87 (317)
-+|+|=|+-||||||+++.|.....
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~ 30 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFA 30 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999987654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.95 E-value=0.06 Score=43.00 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+.+.||+|+||||+.+.++..+
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHhc
Confidence 48899999999999999998765
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=90.79 E-value=0.054 Score=48.06 Aligned_cols=21 Identities=33% Similarity=0.407 Sum_probs=18.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~ 83 (317)
..+.|+|++|+|||++++.|.
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li 71 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELA 71 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEeCCCCcHHHHHHHHH
Confidence 469999999999999997665
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.66 E-value=0.064 Score=43.72 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.|.||+|+||||+.++++...
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 46788999999999999988654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.57 E-value=0.09 Score=44.03 Aligned_cols=29 Identities=28% Similarity=0.411 Sum_probs=24.4
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
+....|.+++|+|++|+|||||+..++..
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 45667999999999999999998777643
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.43 E-value=0.095 Score=43.74 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTG 84 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g 84 (317)
.|..+-|.|++|+|||||.-.++.
T Consensus 59 ~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 59 RGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SSSEEEEECSSSSSHHHHHHHHHH
T ss_pred cceeEEEecCCCcHHHHHHHHHHH
Confidence 478999999999999999755543
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.21 E-value=0.051 Score=45.50 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=14.6
Q ss_pred EEEEEcCCCCcHHHH-HHHH
Q 021103 64 RVALIGFPSVGKSTL-LTLL 82 (317)
Q Consensus 64 ~valiG~ngaGKSTL-ln~L 82 (317)
-+.|+|++|+||||. +..+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv 35 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKI 35 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHH
Confidence 367899999999975 4444
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.48 E-value=0.13 Score=42.82 Aligned_cols=25 Identities=28% Similarity=0.223 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcc
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGT 85 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~ 85 (317)
.|..+-|.|+||+|||||.-.++..
T Consensus 53 ~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 53 MGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEecCCCcHHHHHHHHHHHH
Confidence 4789999999999999998666544
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=88.97 E-value=0.11 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhccC
Q 021103 64 RVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 64 ~valiG~ngaGKSTLln~L~g~~ 86 (317)
.+.++||+|||||-|.++|+...
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeeeCCCCccHHHHHHHHHhhc
Confidence 58899999999999999998764
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=88.96 E-value=0.081 Score=44.65 Aligned_cols=16 Identities=19% Similarity=0.353 Sum_probs=13.3
Q ss_pred EEEEEcCCCCcHHHHH
Q 021103 64 RVALIGFPSVGKSTLL 79 (317)
Q Consensus 64 ~valiG~ngaGKSTLl 79 (317)
.+.|.|++||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3678899999999754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=88.95 E-value=0.11 Score=45.21 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHh
Q 021103 62 HGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 62 g~~valiG~ngaGKSTLln~L~ 83 (317)
+..+.|.|+||+||||++..+.
T Consensus 163 ~~~~vI~G~pGTGKTt~i~~~l 184 (359)
T d1w36d1 163 RRISVISGGPGTGKTTTVAKLL 184 (359)
T ss_dssp BSEEEEECCTTSTHHHHHHHHH
T ss_pred CCeEEEEcCCCCCceehHHHHH
Confidence 4578999999999999885543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=88.32 E-value=0.17 Score=43.51 Aligned_cols=26 Identities=31% Similarity=0.322 Sum_probs=22.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccCCC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTHSE 88 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~~~ 88 (317)
-+|.|=|+-|+||||+++.|......
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEEECCccCCHHHHHHHHHHHhcc
Confidence 47899999999999999999987643
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.19 E-value=0.11 Score=44.61 Aligned_cols=24 Identities=33% Similarity=0.296 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhccC
Q 021103 63 GRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~g~~ 86 (317)
-+|+|=|+-||||||+++.|....
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC--
T ss_pred eEEEEECCcCCCHHHHHHHHHHHh
Confidence 368999999999999999998653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=86.37 E-value=0.25 Score=41.07 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|.++-+.|++++|||||.-.++...
T Consensus 56 ~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 56 RGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CceEEEEecCCccchHHHHHHHHHHH
Confidence 47799999999999999987777543
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=85.47 E-value=0.11 Score=43.55 Aligned_cols=31 Identities=19% Similarity=0.055 Sum_probs=24.9
Q ss_pred CCcEEEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 53 EGFEVTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 53 ~~~~~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
.|.-+.+..|.+++|+|++|+|||+|+..+.
T Consensus 58 ID~l~pig~GQr~~Ifg~~g~GKt~l~~~~~ 88 (276)
T d1fx0a3 58 IDAMIPVGRGQRELIIGDRQTGKTAVATDTI 88 (276)
T ss_dssp TTTTSCCBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred EeccccccCCceEeeccCCCCChHHHHHHHH
Confidence 3444566679999999999999999987654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.37 E-value=0.19 Score=42.13 Aligned_cols=27 Identities=22% Similarity=0.132 Sum_probs=22.8
Q ss_pred EEEeCCcEEEEEcCCCCcHHHHHHHHh
Q 021103 57 VTKFGHGRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 57 ~~~~~g~~valiG~ngaGKSTLln~L~ 83 (317)
+....|.+++|+|++|+|||+|+..++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 455679999999999999999986554
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.06 E-value=0.28 Score=35.50 Aligned_cols=26 Identities=19% Similarity=0.054 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhccC
Q 021103 61 GHGRVALIGFPSVGKSTLLTLLTGTH 86 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLln~L~g~~ 86 (317)
.|-.+.+-|.+|+|||||-++|.-..
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l 30 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTF 30 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHH
Confidence 36788999999999999999996544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.56 E-value=0.26 Score=35.84 Aligned_cols=21 Identities=24% Similarity=0.071 Sum_probs=16.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHh
Q 021103 63 GRVALIGFPSVGKSTLLTLLT 83 (317)
Q Consensus 63 ~~valiG~ngaGKSTLln~L~ 83 (317)
....|.+|+|+|||+++-.+.
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999875443
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=83.42 E-value=0.26 Score=41.66 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.2
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 021103 61 GHGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLl 79 (317)
.|....+.|.+|+|||||-
T Consensus 13 ~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 13 KGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 3577889999999999965
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=82.71 E-value=0.29 Score=41.52 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=15.7
Q ss_pred CcEEEEEcCCCCcHHHHH
Q 021103 62 HGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 62 g~~valiG~ngaGKSTLl 79 (317)
|....+.|.+|+|||||-
T Consensus 14 ~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 14 GDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp CCEEEEEECTTSCHHHHT
T ss_pred CCEEEEEccCCCCccccc
Confidence 567889999999999964
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=81.37 E-value=0.36 Score=40.96 Aligned_cols=19 Identities=26% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 021103 61 GHGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLl 79 (317)
.|....+.|.+|+|||||-
T Consensus 13 ~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 13 QGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEccCCCCcccce
Confidence 3567789999999999986
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=80.52 E-value=0.27 Score=35.27 Aligned_cols=19 Identities=21% Similarity=0.139 Sum_probs=15.4
Q ss_pred CCcEEEEEcCCCCcHHHHH
Q 021103 61 GHGRVALIGFPSVGKSTLL 79 (317)
Q Consensus 61 ~g~~valiG~ngaGKSTLl 79 (317)
.|..+.|.+|+|+|||...
T Consensus 6 ~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 6 KGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TTCEEEECCCTTSSTTTTH
T ss_pred cCCcEEEEcCCCCChhHHH
Confidence 4678889999999999443
|