Citrus Sinensis ID: 021109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEccHHHHHHHHccccccEEEEEHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mrnfplsrgtvsgILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFiractpasgedssehghfVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMlsplaipvkmtlfpATKKrirsagssdslaqeggdstqtdplltpsssaaylgsfyetedfsdVEILLAIGegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNfagrlgsgvlsehyvssqwyplccdctaWSLLWRHILFDGSNCLRAFWLETFWPYL
Flexible Loop (DISEMBL)
mrnfplsrgTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAgssdslaqeggdstqtdplltPSSSAAYLGSFYETEDFSDVEILLAigegavkekrrprrgedfklgEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Low Complexity Region (SEG)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTlllflalgipliclVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Disordered region (IsUnstruct)
*********TVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA*******HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA**********************************AYLGSFYETEDFSDVEILLAIGEGAV**********DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPY*
Disordered Region (DISOPRED)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACT************FVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA********************************************************************GEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Disordered Region (DISEMBL)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTP********HGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKK*********************DPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Disordered Region (DISPRO)
*RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPA*************************************************EI*L**GEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWLETFWPYL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
24461856	564	nodulin-like protein [Citrus trifoliata]	0.889	0.5	0.975	1e-147
224134428	564	predicted protein [Populus trichocarpa]	0.889	0.5	0.691	1e-109
225443039	564	PREDICTED: uncharacterized membrane prot	0.889	0.5	0.678	1e-102
449468956	565	PREDICTED: uncharacterized protein LOC10	0.889	0.499	0.639	1e-102
224054332	564	predicted protein [Populus trichocarpa]	0.886	0.498	0.685	1e-101
449516077	565	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.889	0.499	0.639	1e-101
147775997	504	hypothetical protein VITISV_014065 [Viti	0.851	0.535	0.693	6e-99
359484689	573	PREDICTED: uncharacterized protein LOC10	0.943	0.521	0.580	2e-97
297839885	563	hypothetical protein ARALYDRAFT_895939 [	0.880	0.495	0.627	1e-95
296084552	512	unnamed protein product [Vitis vinifera]	0.921	0.570	0.574	7e-95

>gi|24461856|gb|AAN62343.1|AF506028_10 nodulin-like protein [Citrus trifoliata]

 Score =  526 bits (1356), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 275/282 (97%), Positives = 277/282 (98%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI
Sbjct: 134 MRNFPLSRGTVAGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML
Sbjct: 194 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMTLFPATKKRIRSA SSDSLAQEGGDST TDPLLTPSSSAAYLGSFYETEDF
Sbjct: 254 SPLAIPVKMTLFPATKKRIRSADSSDSLAQEGGDSTPTDPLLTPSSSAAYLGSFYETEDF 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ
Sbjct: 314 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYV S+  P
Sbjct: 374 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVRSKAIP 415

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134428|ref|XP_002327403.1| predicted protein [Populus trichocarpa] gi|222835957|gb|EEE74378.1| predicted protein [Populus trichocarpa]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 195/282 (69%), Positives = 233/282 (82%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKG AGI+AA+YTV+Y++VL+ SA+ LLLFL L IP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGCAGISAAVYTVVYSLVLKGSASNLLLFLTLVIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDSSEH HF+FTQAA + LAIY++  +I    VSLSDA+SYILVAI+V+F++
Sbjct: 194 RPCTPASGEDSSEHVHFLFTQAAVILLAIYLLITAIIGTVVSLSDAVSYILVAIVVIFLI 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLAIPVKMT+FP+  K+   + SSD L    G++T TDPLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAIPVKMTIFPSRPKKNPPSDSSDHLMLGEGETTPTDPLLTPSSSATSLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SDVEILLA+GEGAVK+KRRP+RGEDFK+ EA +KADFWLLW VYFLGVG+GVT+LNNLAQ
Sbjct: 314 SDVEILLAMGEGAVKKKRRPKRGEDFKIHEALIKADFWLLWVVYFLGVGSGVTILNNLAQ 373

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           IG A G+ DTT LL LF  CNF GR+GSG +SEH+V S+  P
Sbjct: 374 IGAAFGLEDTTILLALFGFCNFVGRIGSGAVSEHFVRSRAIP 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443039|ref|XP_002270754.1| PREDICTED: uncharacterized membrane protein YMR155W [Vitis vinifera] gi|297743570|emb|CBI36437.3| unnamed protein product [Vitis vinifera]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 192/283 (67%), Positives = 231/283 (81%), Gaps = 1/283 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 192 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 251

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP+ +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 252 CPLAIPLKMTLFPSNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 311

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 312 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 371

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           QIGVA GV DTT LL LFS CNF GRL  GV+SE++V ++  P
Sbjct: 372 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGVVSEYFVRTRTLP 414

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468956|ref|XP_004152187.1| PREDICTED: uncharacterized protein LOC101211550 [Cucumis sativus]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 225/283 (79%), Gaps = 1/283 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L +++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLGLFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+V S+  P
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMIP 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054332|ref|XP_002298207.1| predicted protein [Populus trichocarpa] gi|222845465|gb|EEE83012.1| predicted protein [Populus trichocarpa]

 Score =  375 bits (964), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 194/283 (68%), Positives = 225/283 (79%), Gaps = 2/283 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTVSGILKGYAGIAAA+YTV+Y +VL+ S + LLL L LGIP++CL   YFI
Sbjct: 134 MRNFPLSRGTVSGILKGYAGIAAAVYTVIYKLVLKESDSELLLILTLGIPILCLAMMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C+PASG DSSEH HF+F+Q ASV LA+Y++  +I S  VSLSD +SYILV IMV+ ++
Sbjct: 194 RPCSPASGVDSSEHVHFIFSQVASVLLALYLLITTIISGVVSLSDTVSYILVLIMVIILM 253

Query: 121 SPLAIPVKMTLFPATKKR-IRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
           SPLAIPVKMTLFPA  KR +  + SSD L  + G+ST TD LLTPSSS   LGSFYE ED
Sbjct: 254 SPLAIPVKMTLFPAEHKRHVPPSDSSDHLVPKEGESTPTDSLLTPSSSGTNLGSFYENED 313

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
             D  +LLA+GEGAVK KRRPRRGEDFK+ EA +KADFWLLW V FLGVGAGVTVLNNLA
Sbjct: 314 ALDAGMLLAVGEGAVK-KRRPRRGEDFKIREALIKADFWLLWVVSFLGVGAGVTVLNNLA 372

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           QIGVA G+ DTT LL LFS CNF GR+GSG +SEH+V  +  P
Sbjct: 373 QIGVAFGLEDTTLLLTLFSFCNFVGRIGSGAISEHFVRLKMIP 415

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516077|ref|XP_004165074.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101223430 [Cucumis sativus]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 181/283 (63%), Positives = 224/283 (79%), Gaps = 1/283 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YTV+Y++VL+ SA  LLLFLA+GIP++CL   YF+
Sbjct: 134 MRNFPLSRGTVAGILKGYVGLSAAVYTVIYSLVLRKSALNLLLFLAIGIPILCLAMMYFV 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPAS ED SE  HF+FTQAA V L  ++V+ +I     + SDA+ Y LVAIMV+ ++
Sbjct: 194 RPCTPASSEDPSERAHFLFTQAACVLLXSFLVSTTILDATTTPSDAVGYTLVAIMVILLM 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMT+   TK       SS+ LA    DS+Q +PLLTPSSSA  LGSFYE +D 
Sbjct: 254 SPLAVPIKMTICARTKTLGPRVDSSEPLASGESDSSQIEPLLTPSSSATNLGSFYENDDA 313

Query: 181 SDVEILLAIGEGAV-KEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
           SDVE LLA+GEGA+ K+KRRP+RGEDFKL EA +KADFWLLWF+YFLGVG G+TVLNNL+
Sbjct: 314 SDVETLLAVGEGAIHKKKRRPKRGEDFKLREAVIKADFWLLWFLYFLGVGPGITVLNNLS 373

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           QIG++LG+ND T LL LFS CNF GRLGSGV+SEH+V S+  P
Sbjct: 374 QIGISLGINDATLLLALFSFCNFVGRLGSGVISEHFVRSRMIP 416

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775997|emb|CAN69082.1| hypothetical protein VITISV_014065 [Vitis vinifera]

 Score =  367 bits (941), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 188/271 (69%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +YN VLQ SA+ LLLFL LG+P++C    YFI
Sbjct: 79  MRNFPLSRGTVAGILKGYIGLSAAVYTEIYNSVLQESASKLLLFLTLGLPVLCFALMYFI 138

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           RACTPASGEDSSEHGHF+FTQAASV L IY++A ++  D  + SDALS     IMV+F+L
Sbjct: 139 RACTPASGEDSSEHGHFLFTQAASVCLGIYLLATTVVDDLFNPSDALSNTFTGIMVIFLL 198

Query: 121 SPLAIPVKMTLFPA-TKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETED 179
            PLAIP+KMTLFP  +KK +   GSSDSL Q  G+S QT+PLLTPSSSA  LGSF+E E 
Sbjct: 199 CPLAIPLKMTLFPTNSKKNLPPVGSSDSLVQGEGNSNQTEPLLTPSSSATCLGSFHEGEY 258

Query: 180 FSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLA 239
            SD+++LLA+GEGA+K+KR+P+RGEDFK  EAF+KADFWLLW VYFLGVG+GVTVLNNLA
Sbjct: 259 ASDIDMLLAVGEGAIKKKRKPKRGEDFKFREAFIKADFWLLWLVYFLGVGSGVTVLNNLA 318

Query: 240 QIGVALGVNDTTELLCLFSLCNFAGRLGSGV 270
           QIGVA GV DTT LL LFS CNF GRL  GV
Sbjct: 319 QIGVAFGVTDTTILLSLFSFCNFLGRLFGGV 349

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484689|ref|XP_002268798.2| PREDICTED: uncharacterized protein LOC100251745 [Vitis vinifera]

 Score =  361 bits (927), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 177/305 (58%), Positives = 231/305 (75%), Gaps = 6/305 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 132 MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 191

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 192 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 251

Query: 121 SPLAIPVKMTLFPATKKRI----RSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYE 176
           +PLAIP+KMTL P  + +     +  GSS+S+ Q   ++ +T+PLLTPSSS A LGSF++
Sbjct: 252 APLAIPIKMTLNPTNRSKSGMLNQPVGSSESMLQGEENADKTEPLLTPSSSTASLGSFHK 311

Query: 177 TEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLN 236
            +  S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLN
Sbjct: 312 NDCVSEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLN 371

Query: 237 NLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP--LCCDCTAWSLLW 294
           NLAQIG+A GV++TT LLCLFS CNF GRLG G +SEH++ S+  P  +   CT   ++ 
Sbjct: 372 NLAQIGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRSKTIPRTIWMTCTQVIMVI 431

Query: 295 RHILF 299
            ++LF
Sbjct: 432 TYLLF 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839885|ref|XP_002887824.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata] gi|297333665|gb|EFH64083.1| hypothetical protein ARALYDRAFT_895939 [Arabidopsis lyrata subsp. lyrata]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 177/282 (62%), Positives = 216/282 (76%), Gaps = 3/282 (1%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SAT LLLFL +GIP+ICL   YFI
Sbjct: 134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSATNLLLFLTVGIPVICLTVMYFI 193

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C PA+GED SE  +F F  A S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct: 194 RPCIPATGEDPSEPMYFAFLLATSILFAAYLVVTTVVSEVFILPSILKYVLVAIMVLLLL 253

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           SPLA+P+KMTLF +  K     GSSDSLA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct: 254 SPLAVPIKMTLFRSNAKS-SPLGSSDSLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           SD+EILLA GEGAVK+KR+PRRGEDFKLG+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct: 311 SDMEILLAEGEGAVKKKRKPRRGEDFKLGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
           IG A G+ DTT LLCLFS  NF GRL SG +SEH+V S+  P
Sbjct: 371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLP 412

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084552|emb|CBI25573.3| unnamed protein product [Vitis vinifera]

 Score =  353 bits (905), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 173/301 (57%), Positives = 225/301 (74%), Gaps = 9/301 (2%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           MRNFPLSRGTV+GILKGY G++AA+YT +Y   L  S++ LL+FLALG+PLIC    YFI
Sbjct: 82  MRNFPLSRGTVAGILKGYGGLSAAVYTEIYTTTLHKSSSELLMFLALGVPLICFTMMYFI 141

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R CTPASGEDS++HGHF+FTQAASV L  Y++  +I +D  SLS  +SY  +A MV+ ++
Sbjct: 142 RPCTPASGEDSAQHGHFLFTQAASVVLGSYLLTTTILNDIFSLSAPISYTFLAAMVLLLM 201

Query: 121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
           +PLAIP+KMTL P  +       S   +  +  ++ +T+PLLTPSSS A LGSF++ +  
Sbjct: 202 APLAIPIKMTLNPTNR-------SKSGMLNQPENADKTEPLLTPSSSTASLGSFHKNDCV 254

Query: 181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
           S++++LLA GEGAVK+KRRPRRGEDFK  EA VK DFWLL+ VYF GVG+GVTVLNNLAQ
Sbjct: 255 SEIDMLLAEGEGAVKKKRRPRRGEDFKFTEALVKVDFWLLFLVYFAGVGSGVTVLNNLAQ 314

Query: 241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP--LCCDCTAWSLLWRHIL 298
           IG+A GV++TT LLCLFS CNF GRLG G +SEH++ S+  P  +   CT   ++  ++L
Sbjct: 315 IGIAQGVHNTTMLLCLFSFCNFLGRLGGGAVSEHFLRSKTIPRTIWMTCTQVIMVITYLL 374

Query: 299 F 299
           F
Sbjct: 375 F 375

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2198938	561	AT1G80530 "AT1G80530" [Arabido	0.880	0.497	0.570	1.2e-79
TAIR|locus:2078643	584	AT3G01930 [Arabidopsis thalian	0.889	0.482	0.322	1.1e-34
TAIR|locus:2174683	579	AT5G14120 [Arabidopsis thalian	0.861	0.471	0.307	8.5e-33
TAIR|locus:2116855	567	AT4G34950 [Arabidopsis thalian	0.876	0.490	0.285	4.7e-29
TAIR|locus:2046238	577	AT2G28120 [Arabidopsis thalian	0.403	0.221	0.287	3.4e-17
TAIR|locus:2011241	526	AT1G18940 [Arabidopsis thalian	0.299	0.180	0.313	3.1e-13
TAIR|locus:2040809	525	AT2G34350 [Arabidopsis thalian	0.246	0.148	0.362	3.3e-13
TAIR|locus:2159752	540	AT5G50520 [Arabidopsis thalian	0.514	0.301	0.322	1.6e-12
TAIR|locus:2832385	540	AT5G50630 [Arabidopsis thalian	0.514	0.301	0.322	1.6e-12
TAIR|locus:2059829	546	AT2G16660 [Arabidopsis thalian	0.564	0.327	0.313	1.6e-12

TAIR|locus:2198938 AT1G80530 "AT1G80530" [Arabidopsis thaliana (taxid:3702)]

 Score = 800 (286.7 bits), Expect = 1.2e-79, P = 1.2e-79
 Identities = 161/282 (57%), Positives = 199/282 (70%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             MRNFP+SRG V+G+LKGY GI+ A +TVL++MVL +SA                   YFI
Sbjct:   134 MRNFPMSRGPVAGLLKGYIGISGAAFTVLFSMVLHHSAMDLLLFLTVGIPVICLTVMYFI 193

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R C PA+GED SE  +F F    S+  A Y+V  ++ S+   L   L Y+LVAIMV+ +L
Sbjct:   194 RPCIPATGEDPSEPMYFAFLLVTSILFAAYLVVTTVLSEVFILPSILKYVLVAIMVLLLL 253

Query:   121 SPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDF 180
             SPLA+P+KMTLF +  K     GSSD+LA+E G  T  +PLLTPS+SA+ LG  +E +D 
Sbjct:   254 SPLAVPIKMTLFRSNAKS-SPLGSSDNLAKEEG--THEEPLLTPSTSASNLGPIFEGDDE 310

Query:   181 SDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ 240
             SD+EILLA  EGAVK+KR+PRRGEDFK G+ FVKADFWLLWFVYFLG+G+GVTV NNLAQ
Sbjct:   311 SDMEILLAEAEGAVKKKRKPRRGEDFKFGQVFVKADFWLLWFVYFLGMGSGVTVSNNLAQ 370

Query:   241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
             IG A G+ DTT LLCLFS  NF GRL SG +SEH+V S+  P
Sbjct:   371 IGFAFGIKDTTILLCLFSFFNFIGRLASGAISEHFVRSRTLP 412

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2078643 AT3G01930 [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 96/298 (32%), Positives = 148/298 (49%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  +   +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAILSQVYTMIHSSDRASLIFMVAVAPSVVVVPLMFFI 196

Query:    61 RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
             R         SS+   F    A  + LA Y++A+ +  D++ LS ++      ++   +L
Sbjct:   197 RPVGGHRQIRSSDATSFTVIYAVCILLAAYLMAVMLVEDFIDLSHSIIIAFTVVLFAILL 256

Query:   121 SPLAIPVKMTLFPATKK---RIRSAGSSDSLAQEGGDSTQTD--PLLTPSS-------SA 168
              P+ IP+  + F A+      +      D   Q+ G ST  D  P L  S          
Sbjct:   257 VPIFIPIATSCFTASTDPCDTLEEPLLGDQQGQDPGQSTTPDHGPELIFSEVEDEKPKEV 316

Query:   169 AYLGSFYETEDFSDVE--ILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLLWFVY 224
               L +    +  + ++  ++ A  EGAV+ KRR  P RGEDF L +A VKADFWL++F  
Sbjct:   317 DLLPAVERHKRIAQLQAKLMQAAAEGAVRVKRRRGPHRGEDFTLTQALVKADFWLIFFSL 376

Query:   225 FLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
              LG G+G+TV++NL Q+  +LG ++T   + + S+ NF GR+G G  SE  V    YP
Sbjct:   377 LLGSGSGLTVIDNLGQMSQSLGYDNTHVFVSMISIWNFLGRIGGGYFSELIVRDYAYP 434

GO:0005886 "plasma membrane" evidence=ISM

TAIR|locus:2174683 AT5G14120 [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 93/302 (30%), Positives = 149/302 (49%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG V GILKG+AG+  AI + +Y M+  ++  +                 +FI
Sbjct:   137 VQNFPKSRGPVVGILKGFAGLGGAIISQIYTMIHSSNPASLILMVAVTPAVVVVCLMFFI 196

Query:    61 RACTPASGEDS---SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVV 117
             R   P  G      ++   F F     + LA Y++++ +  D V +S  +  +   ++ V
Sbjct:   197 R---PVGGHKQIRPTDGASFTFIYGVCLLLAAYLMSVMLIQDLVVVSHNVITVFTIVLFV 253

Query:   118 FMLSPLAIPVKMTLFPAT-------------KKRIRSAG--SSDSLAQEGGDSTQTDPLL 162
              ++ P+ +P+  + F  T             K+  +  G  + D +  E  D    D  L
Sbjct:   254 ILVVPILVPIMTSFFTETNEPDDTIEEPLVPKREDQEPGLQTPDLILSEVEDEKPKDVDL 313

Query:   163 TPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRR--PRRGEDFKLGEAFVKADFWLL 220
              P+S        ++       +++ A  EGAV+  RR  P RGEDF L +A VKADFWL+
Sbjct:   314 LPASER------HKRIAHLQAQLMQAAAEGAVRVNRRRGPHRGEDFTLTQALVKADFWLI 367

Query:   221 WFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQW 280
             +F   LG G+G+TV++NL Q+  +LG ++T  L+ + S+ NF GR+G G  SE  V    
Sbjct:   368 FFSLLLGSGSGLTVIDNLGQMSQSLGYDNTHVLVSMISIWNFLGRIGGGYFSELVVRDYA 427

Query:   281 YP 282
             YP
Sbjct:   428 YP 429

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2116855 AT4G34950 [Arabidopsis thaliana (taxid:3702)]

 Score = 328 (120.5 bits), Expect = 4.7e-29, P = 4.7e-29
 Identities = 81/284 (28%), Positives = 136/284 (47%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             +RNF  +RG VSGILKGY G++ AI+T L N +  +   +                 +F+
Sbjct:   137 IRNFRRNRGPVSGILKGYVGLSTAIFTDLCNALFSSDPASFLVLLSVVPFAVCLTAVFFL 196

Query:    61 RACTPAS--GEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVF 118
             R   P++   ED+ E  +F      +V +A+Y+ +  I       + A S    +I+++ 
Sbjct:   197 REIPPSTTFAEDNEESKYFAVFNIVAVVVAVYLQSYDIIG---IKTGAFSIAFASILLIL 253

Query:   119 MLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETE 178
             + SP+A+P    +           G  D      G   + +  +  +++AA        +
Sbjct:   254 LASPVAVPFHAFIRSKVHDEQDVEGRIDEPLLRSGSEIEVEETIVGAAAAADNELPPSLK 313

Query:   179 DFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNL 238
               S+ E     G     EK+RP  GE+  + EA +  DFW+L+  +  GVG G+ V+NN+
Sbjct:   314 PLSNEEEENH-GTIVTTEKKRPVLGEEHTIMEAMLTVDFWVLFVSFLCGVGTGLAVMNNM 372

Query:   239 AQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP 282
              QIG+ALG  D +  + + S+  F GR+ SG +SEH++     P
Sbjct:   373 GQIGLALGYTDVSIFVSMTSIWGFFGRILSGTISEHFIKKAGTP 416

GO:0009507 "chloroplast" evidence=ISM

GO:0007623 "circadian rhythm" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR|locus:2046238 AT2G28120 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 3.4e-17, Sum P(2) = 3.4e-17
 Identities = 38/132 (28%), Positives = 61/132 (46%)

Query:     1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTXXXXXXXXXXXXXXVTTYFI 60
             ++NFP SRG + G+LKGY G++ AI+T LY  +  + + +              V  Y I
Sbjct:   138 VKNFPESRGVMLGLLKGYVGLSGAIFTQLYFAIYGHDSKSLILLIAWLPAAVSLVFVYLI 197

Query:    61 RACTPASGEDS-SEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFM 119
             R        +  S    F++    S+FLA++++A++I    V  S A       I    +
Sbjct:   198 REKKVVRQRNELSVFYQFLYI---SIFLALFLMAMNIAEKQVHFSKAAYAASATICCALL 254

Query:   120 LSPLAIPVKMTL 131
               PL + VK  L
Sbjct:   255 FVPLTVSVKQEL 266

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2011241 AT1G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 3.1e-13, Sum P(2) = 3.1e-13
 Identities = 31/99 (31%), Positives = 53/99 (53%)

Query:   204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCN 261
             +   L +A    DFWLL+     G+G+G++ +NN+ QIG +L     +   LL L+++ N
Sbjct:   304 KSLNLLQAMCNVDFWLLFLAMICGMGSGISTINNIRQIGESLRYTSVEINSLLALWNIWN 363

Query:   262 FAGRLGSGVLSEHYVSSQ-W-YPLCCDCTAWSLLWRHIL 298
             F GR G G +S+  +  + W  PL    T  ++   H++
Sbjct:   364 FIGRFGGGYVSDWLLHRKGWPRPLLMATTLGTMTIGHLI 402

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2040809 AT2G34350 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
 Identities = 29/80 (36%), Positives = 47/80 (58%)

Query:   205 DFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNF 262
             D  + EA    +FWLL+     G+G+G+  +NN+ Q+G +L  +      L+ L+S+ NF
Sbjct:   305 DMNVLEAICTTNFWLLFVAMICGMGSGLATINNIRQMGESLRYSTVQLNSLVSLWSIWNF 364

Query:   263 AGRLGSGVLSEHYVSSQWYP 282
              GR GSG +S+ Y+ S  +P
Sbjct:   365 LGRFGSGYISDTYLHSHGWP 384

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2159752 AT5G50520 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 58/180 (32%), Positives = 92/180 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2832385 AT5G50630 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 58/180 (32%), Positives = 92/180 (51%)

Query:   104 SDALSYILV-AIMVVFMLSPLAIPVKMTLFPATKKRIRSAGSSDSLAQEGGDSTQTDPLL 162
             SD L ++ +    VV  +  L + V  ++F  T+  I ++G+   +           P+L
Sbjct:   210 SDDLRFLAIYGFCVVLAVYLLGLLVLQSVFDMTQTIITTSGAILVIFM-------VVPVL 262

Query:   163 TPSSSAAYLG----SFYETEDFSDVE-----ILLAIGEGAVKEKRRPRRGEDFKLGEAFV 213
              P SS    G    S    E  S+V+      L+   +   ++KR P  GEDF L +A  
Sbjct:   263 VPFSSVFISGNNVTSVKPEEGTSNVDQHEARTLIERSDRPPEKKRAPCIGEDFTLLQALG 322

Query:   214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSE 273
             +ADFWL++    LGVG+G+T+++NL QI  +LG ++T   + L S+ NF GR+  G  SE
Sbjct:   323 QADFWLIFMSLVLGVGSGITIIDNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYFSE 382

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2059829 AT2G16660 [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 63/201 (31%), Positives = 102/201 (50%)

Query:    86 FLAIYVVAISITSDYVSLSDALSYILVAIMVVF---MLSPLAIPVKMTLFPATKKRIRSA 142
             F    +VA+ + + Y+   D +        V F   +L  LA P+ +  F +  K + + 
Sbjct:   213 FTIFNIVAV-VVAVYLQSYDIIGIKTGVFSVAFASILLFLLASPIAIP-FHSFIKSL-NY 269

Query:   143 GSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIG-EGAVKEKRRPR 201
             G  D L  EG    Q +PLL    +AA      E E    V ++ A+  E   K++++P 
Sbjct:   270 GEQDDL--EG--RIQ-EPLLRSEIAAA------EKE----VIVVAAVAAEEEEKKRKKPV 314

Query:   202 RGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCN 261
              GED  + EA +  DFW+L+  +  GVG G+ V+NN+ QIG+ALG  + +  + + S+  
Sbjct:   315 LGEDHTIMEAVLTVDFWVLFVSFLCGVGTGLAVMNNMGQIGLALGYTNVSIFVSMTSIWG 374

Query:   262 FAGRLGSGVLSEHYVSSQWYP 282
             F GR+ SG LSE+++     P
Sbjct:   375 FFGRILSGTLSEYFLKKAGTP 395

GO:0009507 "chloroplast" evidence=ISM

GO:0080167 "response to karrikin" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
pfam06813	248	pfam06813, Nodulin-like, Nodulin-like	6e-49
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	3e-04

>gnl|CDD|219187 pfam06813, Nodulin-like, Nodulin-like

 Score =  163 bits (414), Expect = 6e-49
 Identities = 66/127 (51%), Positives = 82/127 (64%)

Query: 1   MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFI 60
           +RNFP SRG V GILKGYAG++AAIYT LY  +  N A++LLL  AL   ++ LV  YFI
Sbjct: 122 IRNFPESRGVVLGILKGYAGLSAAIYTQLYTAIFGNDASSLLLLNALVPLVVSLVALYFI 181

Query: 61  RACTPASGEDSSEHGHFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFML 120
           R C    GE  SE   F+     SV LA+Y+VA+SI S    LS A  Y L AIMV+ +L
Sbjct: 182 RPCPGKVGEQRSESVVFLVFNVLSVALAVYLVAMSILSKSFDLSSAEYYALGAIMVLLLL 241

Query: 121 SPLAIPV 127
            PLA+P+
Sbjct: 242 VPLAVPI 248

This family represents a conserved region within plant nodulin-like proteins. Length = 248

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 185 ILLAIGEGAVKEKRRPRRGEDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA 244
            L+    G + +       +D+ + E      FW+L+  +FL   +G+ ++      G +
Sbjct: 175 FLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234

Query: 245 LGVNDT--TELLCLFSLCNFAGRLGSGVLSE 273
           LG++D      + + S+ N  GR   G LS+
Sbjct: 235 LGLSDGFLVLAVSISSIFNGGGRPFLGALSD 265

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
PTZ00207	591	hypothetical protein; Provisional	100.0
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.96
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	98.21
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	97.89
TIGR00893	399	2A0114 d-galactonate transporter.	97.36
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.29
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.2
PLN00028	476	nitrate transmembrane transporter; Provisional	97.15
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.96
PRK11663	434	regulatory protein UhpC; Provisional	96.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	96.81
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	96.79
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	96.5
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.28
PRK09705	393	cynX putative cyanate transporter; Provisional	96.13
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	96.07
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	95.95
PRK09528	420	lacY galactoside permease; Reviewed	95.91
TIGR00900	365	2A0121 H+ Antiporter protein.	95.82
PRK14995	495	methyl viologen resistance protein SmvA; Provision	95.65
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	95.64
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.63
PRK10213	394	nepI ribonucleoside transporter; Reviewed	95.61
PRK03633	381	putative MFS family transporter protein; Provision	95.59
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	95.35
PRK10504	471	putative transporter; Provisional	95.19
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	95.11
TIGR00898	505	2A0119 cation transport protein.	95.11
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.03
PRK11652	394	emrD multidrug resistance protein D; Provisional	95.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	94.99
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	94.97
PRK10091	382	MFS transport protein AraJ; Provisional	94.95
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	94.86
PRK09874	408	drug efflux system protein MdtG; Provisional	94.83
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	94.74
PRK10091	382	MFS transport protein AraJ; Provisional	94.71
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.7
PRK12382	392	putative transporter; Provisional	94.69
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.66
PRK09528	420	lacY galactoside permease; Reviewed	94.64
PRK03545	390	putative arabinose transporter; Provisional	94.6
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	94.53
PRK10504	471	putative transporter; Provisional	94.52
PRK10054	395	putative transporter; Provisional	94.51
TIGR00897	402	2A0118 polyol permease family. This family of prot	94.49
KOG2533	495	consensus Permease of the major facilitator superf	94.45
PRK03699	394	putative transporter; Provisional	94.41
TIGR00900	365	2A0121 H+ Antiporter protein.	94.4
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	94.21
PRK03893	496	putative sialic acid transporter; Provisional	94.2
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	94.16
PRK11663	434	regulatory protein UhpC; Provisional	94.11
PRK11195	393	lysophospholipid transporter LplT; Provisional	94.09
PRK03699	394	putative transporter; Provisional	93.87
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	93.79
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	93.72
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	93.63
PRK10133	438	L-fucose transporter; Provisional	93.54
TIGR00891	405	2A0112 putative sialic acid transporter.	93.4
PRK12307	426	putative sialic acid transporter; Provisional	93.4
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	93.39
PRK03545	390	putative arabinose transporter; Provisional	93.35
KOG2532	466	consensus Permease of the major facilitator superf	93.31
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	93.27
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	93.27
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	93.27
PRK03633	381	putative MFS family transporter protein; Provision	93.26
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	93.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	93.18
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	93.17
KOG0569	485	consensus Permease of the major facilitator superf	93.1
PRK10473	392	multidrug efflux system protein MdtL; Provisional	92.97
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	92.82
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	92.65
TIGR00897	402	2A0118 polyol permease family. This family of prot	92.57
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	92.43
PLN00028	476	nitrate transmembrane transporter; Provisional	92.31
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.21
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	92.19
TIGR00892	455	2A0113 monocarboxylate transporter 1.	92.13
PRK10473	392	multidrug efflux system protein MdtL; Provisional	92.11
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	92.02
PRK11043	401	putative transporter; Provisional	91.92
PRK10489	417	enterobactin exporter EntS; Provisional	91.84
PRK05122	399	major facilitator superfamily transporter; Provisi	91.83
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	91.78
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	91.7
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	91.6
PRK12307	426	putative sialic acid transporter; Provisional	91.52
PF13347	428	MFS_2: MFS/sugar transport protein	91.22
TIGR00893	399	2A0114 d-galactonate transporter.	91.02
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	90.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	90.77
PRK11646	400	multidrug resistance protein MdtH; Provisional	90.75
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	90.73
PRK05122	399	major facilitator superfamily transporter; Provisi	90.67
TIGR00895	398	2A0115 benzoate transport.	90.66
PRK09705	393	cynX putative cyanate transporter; Provisional	90.33
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	90.32
TIGR00901	356	2A0125 AmpG-related permease.	90.22
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	90.17
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	90.14
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	90.09
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	89.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	89.86
TIGR00895	398	2A0115 benzoate transport.	89.8
PRK10406	432	alpha-ketoglutarate transporter; Provisional	89.69
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	88.99
PRK12382	392	putative transporter; Provisional	88.76
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	88.72
PRK10133	438	L-fucose transporter; Provisional	88.3
PRK15075	434	citrate-proton symporter; Provisional	87.64
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	87.46
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	87.31
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	87.31
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	87.25
PRK15462	493	dipeptide/tripeptide permease D; Provisional	86.92
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	86.69
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	86.18
PTZ00207	591	hypothetical protein; Provisional	86.08
PRK10207	489	dipeptide/tripeptide permease B; Provisional	85.35
KOG0254	513	consensus Predicted transporter (major facilitator	85.31
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	85.24
PRK10077	479	xylE D-xylose transporter XylE; Provisional	85.15
PRK09874	408	drug efflux system protein MdtG; Provisional	84.88
PRK03893	496	putative sialic acid transporter; Provisional	84.78
PRK10213	394	nepI ribonucleoside transporter; Reviewed	84.78
PRK10489	417	enterobactin exporter EntS; Provisional	84.73
PRK11043	401	putative transporter; Provisional	84.54
TIGR00896	355	CynX cyanate transporter. This family of proteins	84.0
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	83.72
PRK11902	402	ampG muropeptide transporter; Reviewed	83.47
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	82.91
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	82.36
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	81.74
TIGR00898	505	2A0119 cation transport protein.	81.56
PRK09952	438	shikimate transporter; Provisional	81.02
PRK11010	491	ampG muropeptide transporter; Validated	80.07

>PTZ00207 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-39  Score=327.39  Aligned_cols=268  Identities=19%  Similarity=0.278  Sum_probs=205.8

Q ss_pred             ccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeeeccCCCCC------CCCCCCc
Q 021109            2 RNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPASG------EDSSEHG   75 (317)
Q Consensus         2 ~nFP~~RG~vvgi~k~~~GLSaaifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~~~------~~~~~~~   75 (317)
                      +|||++||+++|+.|++.|+|++++++++.+++.+|.+.+++++++++.+++++++.++|.+|++..      .+++|+.
T Consensus       147 ~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~  226 (591)
T PTZ00207        147 SVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKA  226 (591)
T ss_pred             HhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999997642      1344444


Q ss_pred             -----------------chhhHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHH-HHHhhc-cccccccccccccc
Q 021109           76 -----------------HFVFTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMV-VFMLSP-LAIPVKMTLFPATK  136 (317)
Q Consensus        76 -----------------~f~~~~~~~~~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~-~ll~~p-~~i~~~~~~~~~~~  136 (317)
                                       +|..++.+++++++|+++++++++|++++++.+..++++++ ++++.| +++|++.  ++...
T Consensus       227 ~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~--~~~~~  304 (591)
T PTZ00207        227 QRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTT--FDGKR  304 (591)
T ss_pred             HHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHH--hccCC
Confidence                             89999999999999999999999999999999999999888 666667 6666644  33211


Q ss_pred             cccccCCCCCcccccCCCCCCCCCCCCCCccccccCCCCCCCCcchhHHHHHhccCccccccCCCCCCCCCHHhhhhhhH
Q 021109          137 KRIRSAGSSDSLAQEGGDSTQTDPLLTPSSSAAYLGSFYETEDFSDVEILLAIGEGAVKEKRRPRRGEDFKLGEAFVKAD  216 (317)
Q Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~ll~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~~~d~t~~~~l~t~~  216 (317)
                      .+    ++       +++ +..+.  . +  .+.+.     ++++ .++.    +.+.++ +.|++++  |++|++++.|
T Consensus       305 ~~----~~-------~~~-~~~~~--~-~--~~~~~-----~~~~-~~~~----~~~~~~-~~P~~~~--t~~q~l~~~d  354 (591)
T PTZ00207        305 PH----DD-------SDG-KAKEH--V-E--AGEEV-----SAAE-DKVV----ETDVDY-IAPQFQE--TFIEGLKTAR  354 (591)
T ss_pred             cC----CC-------ccc-ccccc--c-c--ccccc-----cccc-cccc----cccccC-CCCCCcc--hHHHHHhchh
Confidence            10    00       000 00000  0 0  00000     0000 0000    011222 2388887  9999999999


Q ss_pred             HHHHHHHHHHhhhhhheeecchhHHHHHh-CC-Cch--hh-HHHHHhhhhcccccccccchhhhhccCC----CcchH--
Q 021109          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GV-NDT--TE-LLCLFSLCNFAGRLGSGVLSEHYVSSQW----YPLCC--  285 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~-~~~--~~-~vsl~si~n~~GRl~~G~lsD~~~~~~~----~~R~~--  285 (317)
                      ||++|+.++|+.|+|++++||++||++|+ |+ .+.  +. +|+++|+||++||+++|++| .+.+|++    +|||.  
T Consensus       355 ~Wll~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~-~~~~~~~~~~r~prt~~l  433 (591)
T PTZ00207        355 LWCLLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFE-IWSQKRRAEDRVPITIAL  433 (591)
T ss_pred             HHHHHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHH-HHHHhhccccccchhHHH
Confidence            99999999999999999999999999999 77 343  33 89999999999999999998 7777666    99999  


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 021109          286 DCTAWSLLWRHILFDGSN  303 (317)
Q Consensus       286 ~~~~~~~~~~~l~~~~~~  303 (317)
                      .++++ ++++|++++...
T Consensus       434 ~~~~~-~~~~~lll~~~~  450 (591)
T PTZ00207        434 FIPSV-CIITMLTLFLTL  450 (591)
T ss_pred             HHHHH-HHHHHHHHHHHC
Confidence            45555 889888776553

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.96  E-value=3.8e-29  Score=229.73  Aligned_cols=127  Identities=44%  Similarity=0.791  Sum_probs=120.6

Q ss_pred             CccCCCCCchhHHHHHHhhhhHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHhhheeeeccCCC--CCCCCCCCcchh
Q 021109            1 MRNFPLSRGTVSGILKGYAGIAAAIYTVLYNMVLQNSATTLLLFLALGIPLICLVTTYFIRACTPA--SGEDSSEHGHFV   78 (317)
Q Consensus         1 v~nFP~~RG~vvgi~k~~~GLSaaifs~i~~~ff~~d~~~fllfLa~~~~~v~ll~~~fir~~p~~--~~~~~~~~~~f~   78 (317)
                      +||||+|||+|+|++|+|+||||+||+|+|++||++|+++|++|+|++|.++++++++++|++|++  .+++++|+++|.
T Consensus       122 ~~NFP~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~vr~~~~~~~~~~~~~~~~~F~  201 (250)
T PF06813_consen  122 VRNFPRSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFFVRPVPPSPSRTRQPSESKRFL  201 (250)
T ss_pred             HHhCccccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhheeccCCccccccCcchhHHHH
Confidence            589999999999999999999999999999999999999999999999999999999999999974  345677888999


Q ss_pred             hHHHHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHhhcccccc
Q 021109           79 FTQAASVFLAIYVVAISITSDYVSLSDALSYILVAIMVVFMLSPLAIPV  127 (317)
Q Consensus        79 ~~~~~~~~l~~yl~~~~i~~~~~~~s~~~~~~~~~~~~~ll~~p~~i~~  127 (317)
                      ..+.+++++++|+++.+++++++++++..++..+++++++|++|++||+
T Consensus       202 ~~~~i~l~la~yLl~~~i~~~~~~~s~~~~~~~~~il~llL~~Pl~i~~  250 (250)
T PF06813_consen  202 FFFAIALALAIYLLVISILQNFVKLSRAARVIFAVILLLLLLLPLAIPV  250 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhhhhccC
Confidence            9999999999999999999999999999999999999999999999985

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=98.21  E-value=1.2e-05  Score=75.25  Aligned_cols=72  Identities=25%  Similarity=0.438  Sum_probs=56.7

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++.++++++|.+++.+++.......+.+...++.++++.++  .....++.++.+.+||+..|.++||++||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  270 (377)
T TIGR00890       197 TVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ  270 (377)
T ss_pred             hHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3467888899999988887776666555565666667777654  34678899999999999999999999986

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=97.89  E-value=9.6e-05  Score=74.99  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=64.6

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchH-
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-  285 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-  285 (317)
                      .+.++++.||.+.+...+....-.+-.--+...+++.+++  +++.++|++++.|.+||++.|++.|+-..+    +.+ 
T Consensus       292 ~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~----~~~~  367 (509)
T KOG2504|consen  292 LSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIR----ALVL  367 (509)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccc----hHHH
Confidence            5889999999998877777666666666677777788876  467899999999999999999999988732    444 


Q ss_pred             -HHHHHHHHHHHH
Q 021109          286 -DCTAWSLLWRHI  297 (317)
Q Consensus       286 -~~~~~~~~~~~l  297 (317)
                       .++.+...++.+
T Consensus       368 ~~~~ll~~gl~~~  380 (509)
T KOG2504|consen  368 FLLTLLIAGLARL  380 (509)
T ss_pred             HHHHHHHHHHHHH
Confidence             445554444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.36  E-value=0.0018  Score=60.54  Aligned_cols=73  Identities=19%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      +.++.++++++|.+++..++.......+........++ .+.+.  .....++..+++.+|++..|.++||++||+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       207 QIKELLKDRRVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             chHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56788999999999998888777776666666666654 55543  356778888999999999999999999874

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.29  E-value=0.0025  Score=60.09  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=55.5

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..++.++++++|.+.+.+++..+....+.+......++ ++.++  ...+.++..+.+.+||+++|.++||+++|
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  291 (366)
T TIGR00886       217 DQLKVFRDRHTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGA  291 (366)
T ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccc
Confidence            34678899999999988887776655555556666654 45543  34577888899999999999999999987

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.20  E-value=0.002  Score=63.94  Aligned_cols=67  Identities=13%  Similarity=0.126  Sum_probs=49.7

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhh
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY  275 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~  275 (317)
                      .+.++++.||.+.+..++...+-.+.......+.++.+.+.  .....++.++.+.++|+..|.++|+.
T Consensus       235 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~  303 (455)
T TIGR00892       235 FSLFTHRGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLK  303 (455)
T ss_pred             hHHhcCchHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            36889999998887665544443444455566667777653  45788899999999999999999973

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.15  E-value=0.00084  Score=67.08  Aligned_cols=75  Identities=21%  Similarity=0.258  Sum_probs=57.9

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCC
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWY  281 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~  281 (317)
                      .+++.++++.+|++++.+++..+....+.+.+....+ ..|.+  ++..+.++..+++.+||+++|+++||++||++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~  321 (476)
T PLN00028        244 VLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGM  321 (476)
T ss_pred             HHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCc
Confidence            3567889999999999887777666655555555544 45665  345688899999999999999999999987543

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.96  E-value=0.011  Score=58.29  Aligned_cols=78  Identities=19%  Similarity=0.187  Sum_probs=58.4

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPL  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R  283 (317)
                      .+++.++++.+|.+++..++.......+..-+..+.+ .++.+.  .....++..+++.+|+++.|+++||+.+|+...|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~  332 (465)
T TIGR00894       253 PIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSL  332 (465)
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcH
Confidence            5789999999999998887766655555555555554 456653  3467778889999999999999999987655544


Q ss_pred             h
Q 021109          284 C  284 (317)
Q Consensus       284 ~  284 (317)
                      .
T Consensus       333 ~  333 (465)
T TIGR00894       333 T  333 (465)
T ss_pred             H
Confidence            4

>PRK11663 regulatory protein UhpC; Provisional

Probab=96.87  E-value=0.015  Score=57.03  Aligned_cols=68  Identities=24%  Similarity=0.325  Sum_probs=44.9

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          211 AFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++++.+|.+.+.+++....-..+..-...+. +..|.+.  +....+++.+++.+||++.|.++||+.++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~  309 (434)
T PRK11663        239 VLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNG  309 (434)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccC
Confidence            56788999987765543332211222233333 3456553  45678889999999999999999999543

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=96.81  E-value=0.013  Score=54.80  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=51.0

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      ...+.++++.+|.+.+..++.......+........ +.++.+.  .....++..+.+.+|+++.|.++||..+++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~  283 (379)
T TIGR00881       208 FLQYVLLNKVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGR  283 (379)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCc
Confidence            346788999999988877665554433333344444 3456553  356778889999999999999999876543

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=96.79  E-value=0.015  Score=57.36  Aligned_cols=69  Identities=10%  Similarity=0.088  Sum_probs=49.0

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+|++.+|.+++.+++....-..+..-.....++ .+.+  +.....++.++++.+|+++.|+++||++++
T Consensus       248 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~  319 (452)
T PRK11273        248 YVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG  319 (452)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            36788999998888776654433334445555554 4554  334566788899999999999999999654

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.63  E-value=0.028  Score=55.24  Aligned_cols=70  Identities=11%  Similarity=0.071  Sum_probs=49.2

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      +.++++.+|.+.+..++....-.........+.++ .|.+.  +....++.++.+.+|++..|.++||+++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  318 (438)
T TIGR00712       246 YVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGN  318 (438)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            46788999999776665543322333445555555 35543  456778899999999999999999997653

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=96.50  E-value=0.039  Score=54.22  Aligned_cols=87  Identities=9%  Similarity=-0.133  Sum_probs=55.0

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC  285 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~  285 (317)
                      .+.+++++||...+..++................+. +|.+.  ........++...+|+++.|.+.||++||    +..
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----~~~  324 (485)
T TIGR00711       249 LRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPR----KLV  324 (485)
T ss_pred             HHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcH----HHH
Confidence            467788888887665554433322233334445554 45543  34567778889999999999999999876    334


Q ss_pred             HHHHHHHHHHHHHH
Q 021109          286 DCTAWSLLWRHILF  299 (317)
Q Consensus       286 ~~~~~~~~~~~l~~  299 (317)
                      .++..+++++.+++
T Consensus       325 ~~g~~~~~~~~~~~  338 (485)
T TIGR00711       325 TIGLILYAVGFYWR  338 (485)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44555555555443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00896 CynX cyanate transporter

Probab=96.28  E-value=0.0096  Score=56.36  Aligned_cols=71  Identities=18%  Similarity=0.183  Sum_probs=52.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++.+|++.+|.+.+.+++..+.-..+......+.++.+.+.  .....++..+...+||+..|.++||++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~  262 (355)
T TIGR00896       190 PVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQ  262 (355)
T ss_pred             CchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc
Confidence            356788999998776665544443444455666677776653  35688899999999999999999999544

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.13  E-value=0.0098  Score=57.63  Aligned_cols=70  Identities=20%  Similarity=0.245  Sum_probs=51.6

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.++++++|.+.+.+++....-..+.+-...+.++.|.+.  .....++.++++.+||+..|.++||++||
T Consensus       199 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~  270 (393)
T PRK09705        199 VRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRR  270 (393)
T ss_pred             cccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccch
Confidence            45677888998877665554433334445566666666653  45688999999999999999999999876

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=96.07  E-value=0.012  Score=55.45  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      .||..++.+++......++..-..+ +.++++.+.  .....++..+...++.+.+|.++||++||    |...++.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~   77 (366)
T TIGR00886         2 NLFFSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPR----YTTTLSLLLL   77 (366)
T ss_pred             chHHHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHH
Confidence            5888888888776666665555554 677888764  35688899999999999999999999987    4555555555


Q ss_pred             HHHHHHHHhh
Q 021109          293 LWRHILFDGS  302 (317)
Q Consensus       293 ~~~~l~~~~~  302 (317)
                      +++.+++...
T Consensus        78 ~i~~~~~~~~   87 (366)
T TIGR00886        78 AIPCLWAGLA   87 (366)
T ss_pred             HHHHHHHHHH
Confidence            6655554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=95.95  E-value=0.059  Score=51.86  Aligned_cols=64  Identities=14%  Similarity=0.074  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+|.+++.+++.......+..-...+.+..|.+.  .....++..+.+.+|+++.|.++||++||
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  349 (481)
T TIGR00879       284 RLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRR  349 (481)
T ss_pred             HHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            34444444433322222223333444556667654  34677788899999999999999999986

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.91  E-value=0.013  Score=56.99  Aligned_cols=70  Identities=11%  Similarity=0.085  Sum_probs=51.3

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+..++++||.+++.+++...+--.+..-.....++ +|.+.  ..+..++..+...++++.+|.++||++||
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r   76 (420)
T PRK09528          4 MYYLKNPNYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLK   76 (420)
T ss_pred             chhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            356778899999887777665432333333333343 67653  46789999999999999999999999987

>TIGR00900 2A0121 H+ Antiporter protein

Probab=95.82  E-value=0.034  Score=51.72  Aligned_cols=71  Identities=17%  Similarity=0.100  Sum_probs=48.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++.+|++.+|.+.+..++..........+..+. .++ ++.+.  .....++.++.+.+|++..|.++||.+|+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  277 (365)
T TIGR00900       203 IKFVLKNPLLRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRM  277 (365)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            4567888899988877666555554444233333 343 45543  34567778889999999999999988775

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=95.65  E-value=0.33  Score=48.66  Aligned_cols=70  Identities=10%  Similarity=-0.098  Sum_probs=43.4

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.+|++.|+...+..++...+-...........|. .|++  ++.......++...+|.+..|.+.||+++|
T Consensus       253 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~  325 (495)
T PRK14995        253 MRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLR  325 (495)
T ss_pred             HHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            456677777766655544333211112222333343 4554  345667778889999999999999999875

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=95.64  E-value=0.021  Score=56.71  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=51.0

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++++.+|.+++..++..+.-..+..-.....+ .+|.+.  +....++..+++.+|++..|+++||++||
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r  324 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGR  324 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4789999999998887765554333333444443 456653  45677888899999999999999999887

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.63  E-value=0.025  Score=55.71  Aligned_cols=91  Identities=23%  Similarity=0.245  Sum_probs=70.3

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPL  283 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R  283 (317)
                      ..+...+++|-|.+-+.++...|+=.-+.+-.++..++. +.+  ++.....+...-+.+-|-..|.+|||++.+    |
T Consensus       210 ~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~----r  285 (417)
T COG2223         210 QLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGR----R  285 (417)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccch----h
Confidence            345677799999999999999998777778788877764 444  344789999999999999999999999987    6


Q ss_pred             hHHHHHHHHHHHHHHHHh
Q 021109          284 CCDCTAWSLLWRHILFDG  301 (317)
Q Consensus       284 ~~~~~~~~~~~~~l~~~~  301 (317)
                      ........++++..+...
T Consensus       286 v~~~~f~~~~~~~~~l~~  303 (417)
T COG2223         286 VTLAVFVGMALAAALLSL  303 (417)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            665555555555544433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=95.61  E-value=0.022  Score=55.25  Aligned_cols=83  Identities=11%  Similarity=0.013  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHhhhhh---heeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAG---VTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW  290 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~G---l~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~  290 (317)
                      +.|.++...++....+   .+....+.++.++++.+.  ....+++..+...++++..|.++||++||    |.+..+.+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr----~~~~~~~~   93 (394)
T PRK10213         18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR----YVVILFAV   93 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH----HHHHHHHH
Confidence            4444455444433332   234455677888888764  45788899999999999999999999997    65555555


Q ss_pred             HHHHHHHHHHhh
Q 021109          291 SLLWRHILFDGS  302 (317)
Q Consensus       291 ~~~~~~l~~~~~  302 (317)
                      +.+++.++....
T Consensus        94 ~~~~~~~~~~~~  105 (394)
T PRK10213         94 LLTLSCLLVSFA  105 (394)
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.59  E-value=0.026  Score=54.13  Aligned_cols=82  Identities=10%  Similarity=-0.108  Sum_probs=55.7

Q ss_pred             hhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109          213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW  290 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~  290 (317)
                      .++++|.++...++....--.+..-+..+.++++.++  .....+...+.+.++.+.+|.++||++||    |...+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k----~~~~~~~~   79 (381)
T PRK03633          4 YTRPVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFN----RSYYLASL   79 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHH
Confidence            3567888887666543332333445666667777753  45788899999999999999999999998    55544444


Q ss_pred             HHHHHHHH
Q 021109          291 SLLWRHIL  298 (317)
Q Consensus       291 ~~~~~~l~  298 (317)
                      +.+++.+.
T Consensus        80 ~~~~~~~~   87 (381)
T PRK03633         80 IFAAGCAG   87 (381)
T ss_pred             HHHHHHHH
Confidence            44444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=95.35  E-value=0.029  Score=51.97  Aligned_cols=71  Identities=21%  Similarity=0.317  Sum_probs=44.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHHhCCC-ch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALGVN-DT--TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~~~~-~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +++..+++.+|.+++.+++....-.........+ .+.++.+ ..  ....++.++...++++..|.++||++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  273 (352)
T PF07690_consen  199 FKSLFKNPVLWILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRR  273 (352)
T ss_dssp             CTHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             cccccccchhhhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence            4567788888855555444432222233333333 3455655 22  3457888888889999999999998875

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10504 putative transporter; Provisional

Probab=95.19  E-value=0.036  Score=54.61  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS  291 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~  291 (317)
                      .+.+|++++.+++......++......+.+++|.+..  ...++...+...++.+.+|.++|+++||    |.......+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r----~~~~~~~~~   84 (471)
T PRK10504          9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVR----NIFFTAIVL   84 (471)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchH----HHHHHHHHH
Confidence            3468888888877665555566678888888888643  4566777888899999999999999987    554444444


Q ss_pred             HHHHHH
Q 021109          292 LLWRHI  297 (317)
Q Consensus       292 ~~~~~l  297 (317)
                      ++++.+
T Consensus        85 ~~~~~~   90 (471)
T PRK10504         85 FTLGSL   90 (471)
T ss_pred             HHHHHH
Confidence            444443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=95.11  E-value=0.12  Score=51.14  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=47.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHH--HHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG--VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP  282 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~--~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~  282 (317)
                      -.++++--|++-++.+..--.=. -|+.=++++  |..+++  ++...++++=++...|-++.|++|||+-|.++.|
T Consensus       247 YVL~Nk~iW~la~a~vfvYivR~-gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p  322 (448)
T COG2271         247 YVLKNKLIWLLALANVFVYVVRY-GINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGP  322 (448)
T ss_pred             HHHcChHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccch
Confidence            35778888988776654322111 123333443  333554  4567899999999999999999999997554444

>TIGR00898 2A0119 cation transport protein

Probab=95.11  E-value=0.13  Score=51.24  Aligned_cols=72  Identities=13%  Similarity=0.010  Sum_probs=44.4

Q ss_pred             CCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.+++++++.+|...+...+.+.......+......+.++.+ ......+.++....|+++.|.++||++||
T Consensus       314 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~l~dr~grr  385 (505)
T TIGR00898       314 YSFLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGN-IYLDLFISGLVELPAKLITLLLIDRLGRR  385 (505)
T ss_pred             CcHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            4678999999998887766554443222111111111222222 22334466777888999999999999986

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.03  E-value=0.032  Score=53.76  Aligned_cols=66  Identities=15%  Similarity=0.161  Sum_probs=46.3

Q ss_pred             hhHHHHHHHHHHHhhhh-hheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          214 KADFWLLWFVYFLGVGA-GVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~-Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      +++||.+....++..++ +.....-...+.+.++.+.  ..+.+++.++...++++.+|.++||++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~   69 (396)
T TIGR00882         1 NTNFWMFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKK   69 (396)
T ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence            57899987555554443 4443322223344567653  457899999999999999999999999983

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=95.00  E-value=0.066  Score=51.36  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHH
Q 021109          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLW  294 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~  294 (317)
                      .|++.....++.....++......+.++++.+.  .....++..+...++.+.+|.++||++||    |.+.++..+.++
T Consensus        10 l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr----~~~~~~~~~~~~   85 (394)
T PRK11652         10 LFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRR----PVILVGMSIFIL   85 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh----HHHHHHHHHHHH
Confidence            344444444444444455566777888888764  35678899999999999999999999997    444444444444


Q ss_pred             HHH
Q 021109          295 RHI  297 (317)
Q Consensus       295 ~~l  297 (317)
                      +.+
T Consensus        86 ~~~   88 (394)
T PRK11652         86 GTL   88 (394)
T ss_pred             HHH
Confidence            443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=94.99  E-value=0.061  Score=52.59  Aligned_cols=68  Identities=9%  Similarity=-0.084  Sum_probs=49.1

Q ss_pred             hhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109          230 AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG  301 (317)
Q Consensus       230 ~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~  301 (317)
                      +..++.-.+.+|.++++.+.  ....++++.++.++|.+.+|.++||++||    |.+..+..+.+++.++...
T Consensus        31 ~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr----~~l~~~~~~~~~~~~~~~~  100 (413)
T PRK15403         31 TTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRR----PVLITGALIFTLACAATLF  100 (413)
T ss_pred             HHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCch----HHHHHHHHHHHHHHHHHHH
Confidence            44556666777888888763  45688999999999999999999999998    4444444444445444333

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=94.97  E-value=0.26  Score=49.31  Aligned_cols=25  Identities=12%  Similarity=-0.031  Sum_probs=19.8

Q ss_pred             HHHHhhhhcccccccccchhhhhcc
Q 021109          254 LCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       254 vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+..+++..|.+++|+++||++||
T Consensus       341 ~~~~~~~~i~g~~~~~~l~dr~gRR  365 (502)
T TIGR00887       341 LIIALAGTVPGYWVTVFLVDIIGRK  365 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhcch
Confidence            3444556677999999999999997

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK10091 MFS transport protein AraJ; Provisional

Probab=94.95  E-value=0.072  Score=51.16  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.++++.+|.++...+++...-....+......+ ..|.+.  .....++.++++.+||+..|.++||++++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~  265 (382)
T PRK10091        193 FHFLRSPAPWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPL  265 (382)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCch
Confidence            45678889998877666544322222222333333 356553  35678899999999999999999999876

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=94.86  E-value=0.083  Score=49.86  Aligned_cols=81  Identities=21%  Similarity=0.126  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHhhhhh-heeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAG-VTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~G-l~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      .++.....+.+..+.+ .++......+.++++.++  .....++..+.+.++.+.+|.++||++||    |.+..+..+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r----~~~~~~~~~~   80 (385)
T TIGR00710         5 AFALLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRR----PVLLLGLFIF   80 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCCh----HHHHHHHHHH
Confidence            3444444334433333 334455667778888764  35688899999999999999999999987    4444455555


Q ss_pred             HHHHHHHH
Q 021109          293 LWRHILFD  300 (317)
Q Consensus       293 ~~~~l~~~  300 (317)
                      +++.+...
T Consensus        81 ~~~~~~~~   88 (385)
T TIGR00710        81 ALSSLGLA   88 (385)
T ss_pred             HHHHHHHH
Confidence            55554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=94.83  E-value=0.081  Score=50.64  Aligned_cols=82  Identities=18%  Similarity=0.107  Sum_probs=53.3

Q ss_pred             hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch-------hhHHHHHhhhhcccccccccchhhhhccCCCcchHH
Q 021109          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-------TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCD  286 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~-------~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~  286 (317)
                      +.+++.+|+..++..-+.-++.--+..+.++++.+..       ....++..+...++.+.+|.++||++||    |.+.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~   88 (408)
T PRK09874         13 KRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRK----IMLL   88 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcH----HHHH
Confidence            4467777776655443333444556677788776532       3466777888999999999999999987    4444


Q ss_pred             HHHHHHHHHHHHH
Q 021109          287 CTAWSLLWRHILF  299 (317)
Q Consensus       287 ~~~~~~~~~~l~~  299 (317)
                      .+.++.+++.+++
T Consensus        89 ~~~~~~~~~~~~~  101 (408)
T PRK09874         89 RSALGMGIVMVLM  101 (408)
T ss_pred             HHHHHHHHHHHHH
Confidence            4444444444433

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=94.74  E-value=0.058  Score=57.39  Aligned_cols=68  Identities=24%  Similarity=0.171  Sum_probs=44.2

Q ss_pred             hhhhhHHHHHHHHHHHhhhhh---heeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          211 AFVKADFWLLWFVYFLGVGAG---VTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~G---l~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .-.++..|.+++.++++....   ..+++. +..+.++++.+.  ...+.++..++..+|.+++|+++||+|||
T Consensus       159 ~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR  232 (742)
T TIGR01299       159 CGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRK  232 (742)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence            334566776665554443222   122222 233445566653  35678899999999999999999999998

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=94.71  E-value=0.056  Score=51.91  Aligned_cols=83  Identities=12%  Similarity=0.053  Sum_probs=58.4

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      +.+|.+.+..++......++..-+..+.+++|.+.  ....++...++..+|.+.+|.++||++||    |...++.++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~   78 (382)
T PRK10091          3 KVILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLK----HILLFLVALC   78 (382)
T ss_pred             chHHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccH----HHHHHHHHHH
Confidence            45677666655555554556666677888888764  45789999999999999999999999987    4444454445


Q ss_pred             HHHHHHHHh
Q 021109          293 LWRHILFDG  301 (317)
Q Consensus       293 ~~~~l~~~~  301 (317)
                      +++.++...
T Consensus        79 ~~~~~l~~~   87 (382)
T PRK10091         79 VIGNAMFTL   87 (382)
T ss_pred             HHHHHHHHH
Confidence            555444433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.70  E-value=0.082  Score=50.84  Aligned_cols=94  Identities=13%  Similarity=-0.077  Sum_probs=60.4

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC  284 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~  284 (317)
                      +..+.+|+++||.+.+..++..++-..+........++.|.++.  ....++..+...++...+|.+.||+++|    |.
T Consensus       197 ~~~~~l~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~----~~  272 (382)
T TIGR00902       197 AFIALLKNPMNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSAR----DL  272 (382)
T ss_pred             hHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHH----HH
Confidence            45789999999999888777666655566666766777777643  3445555555555555555555555443    55


Q ss_pred             HHHHHHHHHHHHHHHHhhhh
Q 021109          285 CDCTAWSLLWRHILFDGSNC  304 (317)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~~~  304 (317)
                      +.++.+...+..+.++....
T Consensus       273 l~~~~~~~~~~~~~~~~~~~  292 (382)
T TIGR00902       273 LLISAIACVGRWAIIGAIEA  292 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHhh
Confidence            56666666666555554443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK12382 putative transporter; Provisional

Probab=94.69  E-value=0.047  Score=52.34  Aligned_cols=69  Identities=16%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchh-HHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLA-QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~-~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +...+..+|.+++..++..-+.-+...-+. .+.+++|.+.  ....++...+...++.+.+|.++||++||
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r   81 (392)
T PRK12382         10 RSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAK   81 (392)
T ss_pred             CCcccccHHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcch
Confidence            445666777776655444333222223233 2456777653  45789999999999999999999999998

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.66  E-value=0.085  Score=50.92  Aligned_cols=79  Identities=8%  Similarity=-0.066  Sum_probs=52.5

Q ss_pred             hHHHHHHHHHHHhhh----hhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHH
Q 021109          215 ADFWLLWFVYFLGVG----AGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCT  288 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g----~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~  288 (317)
                      .++|++.+.+.+...    ..-++.-...++.++++.+.  .....+...+...++.+..|.++||++||    |.+.++
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~   84 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRR----PVMLAG   84 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHH
Confidence            566666655554443    23334445666778888764  34677889999999999999999999987    444444


Q ss_pred             HHHHHHHHH
Q 021109          289 AWSLLWRHI  297 (317)
Q Consensus       289 ~~~~~~~~l  297 (317)
                      ..+.+++.+
T Consensus        85 ~~~~~~~~~   93 (406)
T PRK15402         85 VAFFILTCL   93 (406)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=94.64  E-value=0.088  Score=51.19  Aligned_cols=70  Identities=6%  Similarity=-0.111  Sum_probs=41.8

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh----CCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL----GVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~----~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.+|++.+|.+.+.+++....-.+..........+.    +.+  ......++..+.+.+|.+.+|.++||+++|
T Consensus       217 ~~~l~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~  292 (420)
T PRK09528        217 LALLKLPKFWFLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAK  292 (420)
T ss_pred             HHHccCCCeEeehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            4677788888766544333322111222222223222    222  123566777788999999999999999987

>PRK03545 putative arabinose transporter; Provisional

Probab=94.60  E-value=0.082  Score=50.78  Aligned_cols=72  Identities=21%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +..+.+|++.+|..+...++......+..+....+.++ .|.+.  .....+++++.+.+|++..|.++||.++|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  271 (390)
T PRK03545        197 SLPLLFRRPALVSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSG  271 (390)
T ss_pred             HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchh
Confidence            35688999999987776655444433333334444454 45543  45677889999999999999999998764

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=94.53  E-value=0.1  Score=48.60  Aligned_cols=56  Identities=11%  Similarity=0.043  Sum_probs=40.8

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI  297 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l  297 (317)
                      ...+.++++.++  .....++..++..++.+.+|.++||++||    |.+.++..+.+++.+
T Consensus        26 ~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r----~~~~~~~~~~~~~~~   83 (377)
T TIGR00890        26 APPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPR----AVAMLGGILYGLGFT   83 (377)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCcc----chhHHhHHHHHHHHH
Confidence            445667777764  45789999999999999999999999998    444444444444443

>PRK10504 putative transporter; Provisional

Probab=94.52  E-value=1.1  Score=44.16  Aligned_cols=81  Identities=14%  Similarity=-0.005  Sum_probs=49.4

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecc-hhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC  285 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~  285 (317)
                      +.+|++.|+...+..++...+ ...... .....+. +|.+.  .........+....++.+.|.++||++||    |.+
T Consensus       256 ~l~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~----~~~  330 (471)
T PRK10504        256 KLFRTRTFSLGLAGSFAGRIG-SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYR----RVL  330 (471)
T ss_pred             HHhcccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----HHH
Confidence            478888888877766655433 333333 3334443 55543  23455666677788889999999999886    444


Q ss_pred             HHHHHHHHHH
Q 021109          286 DCTAWSLLWR  295 (317)
Q Consensus       286 ~~~~~~~~~~  295 (317)
                      ..+.++++++
T Consensus       331 ~~~~~~~~~~  340 (471)
T PRK10504        331 VATTLGLALV  340 (471)
T ss_pred             HHHHHHHHHH
Confidence            4344433433

>PRK10054 putative transporter; Provisional

Probab=94.51  E-value=0.08  Score=51.40  Aligned_cols=64  Identities=11%  Similarity=-0.019  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +++|.+.+..++....--++..-+.... +.+|.+.  ....+++..+...++++..|.++||++||
T Consensus         7 ~~~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k   73 (395)
T PRK10054          7 RSTSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKK   73 (395)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            3688888866665433333333344433 5577764  45678888888999999999999999997

>TIGR00897 2A0118 polyol permease family

Probab=94.49  E-value=0.068  Score=51.79  Aligned_cols=71  Identities=13%  Similarity=0.042  Sum_probs=50.1

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      .+.+|++.+|.+.+..++....-.....-...+.+.+|.+.  .....++..+++.+|++..|.++||++||+
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~  288 (402)
T TIGR00897       216 TILFTNPNVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMN  288 (402)
T ss_pred             HHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchh
Confidence            46788999998887766544332233333444556666653  345667788999999999999999999764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=94.45  E-value=0.17  Score=51.43  Aligned_cols=95  Identities=14%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             CCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109          206 FKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP  282 (317)
Q Consensus       206 ~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~  282 (317)
                      ..++|.++++..|.+.+..+|....--..-+-+..+..+ .++++  +..+...+.+.+.+|-++.|++|||+.  ....
T Consensus       264 ~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~--~~~~  341 (495)
T KOG2533|consen  264 KGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLK--TIFA  341 (495)
T ss_pred             HHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHh--hhHH
Confidence            367899999999999999988777765555556666666 33443  346777888999999999999999974  1111


Q ss_pred             -chH--HHHHHHHHHHHHHHHhh
Q 021109          283 -LCC--DCTAWSLLWRHILFDGS  302 (317)
Q Consensus       283 -R~~--~~~~~~~~~~~l~~~~~  302 (317)
                       |.+  ....++..+|+..+...
T Consensus       342 ~~~~~~~~~~~~~~~g~~~l~~~  364 (495)
T KOG2533|consen  342 RRLLFIVFLCLYAIIGAISLLAA  364 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Confidence             223  34555666665544444

>PRK03699 putative transporter; Provisional

Probab=94.41  E-value=0.093  Score=50.64  Aligned_cols=81  Identities=7%  Similarity=-0.049  Sum_probs=55.2

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      +-+|..++.+++..+.-.+.-....++.++++.+.  .....++..++..+|.+.+|.++||++||    |.+..+.++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r----~~~~~~~~~~   82 (394)
T PRK03699          7 KLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLK----RQLIFGFALM   82 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----HHHHHHHHHH
Confidence            45666666666655554444445667888887764  35678888899999999999999999998    4554444444


Q ss_pred             HHHHHHH
Q 021109          293 LWRHILF  299 (317)
Q Consensus       293 ~~~~l~~  299 (317)
                      +++.++.
T Consensus        83 ~i~~~l~   89 (394)
T PRK03699         83 ILAVAGL   89 (394)
T ss_pred             HHHHHHH
Confidence            4444433

>TIGR00900 2A0121 H+ Antiporter protein

Probab=94.40  E-value=0.051  Score=50.54  Aligned_cols=62  Identities=15%  Similarity=0.003  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ||.++...++.....-+....+..+..+.+.+.  .....++..+...++.+.+|.++||++||
T Consensus         1 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r   64 (365)
T TIGR00900         1 FRLLFAAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRK   64 (365)
T ss_pred             CeehHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchh
Confidence            344554444433333333333444555665543  35678888899999999999999999987

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=94.21  E-value=0.078  Score=51.99  Aligned_cols=71  Identities=14%  Similarity=0.015  Sum_probs=51.4

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--c--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--D--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.+|++.+|...+..++-.|......+++....++.+..  +  +..+.++.-..-.+||+++|++.||+++|
T Consensus       225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~  299 (410)
T TIGR00885       225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH  299 (410)
T ss_pred             HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            34678888999988888887777766666677666654322  1  23355555567789999999999999776

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.20  E-value=0.096  Score=51.81  Aligned_cols=80  Identities=16%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL  293 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~  293 (317)
                      .++.+++.+++..-...+.......+.++++.+.  ....+++..+...+|.+..|.++||++||    |....+.++.+
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~   96 (496)
T PRK03893         21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRR----LAMVISIVLFS   96 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHH
Confidence            4555555554433333333344566777787764  35688888899999999999999999987    44444444444


Q ss_pred             HHHHHH
Q 021109          294 WRHILF  299 (317)
Q Consensus       294 ~~~l~~  299 (317)
                      ++.++.
T Consensus        97 ~~~~~~  102 (496)
T PRK03893         97 VGTLAC  102 (496)
T ss_pred             HHHHHH
Confidence            444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=94.16  E-value=0.087  Score=52.80  Aligned_cols=84  Identities=14%  Similarity=0.069  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHhhhhhheeecchhHHHHH---hCCC--chhhHHHHHhhhhcccccccccchhh-hhccCCCcchHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCCDCTA  289 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~~~~~  289 (317)
                      .+|.+++..++-..+--.+..++....++   +|.+  ++...++.+++...++.+.+|+++|| ++||    |+..++.
T Consensus        11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~----~~l~~~~   86 (475)
T TIGR00924        11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTK----KTMVLGG   86 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchH----HHHHHHH
Confidence            46777766655333323344455555544   5665  34678899999999999999999999 7988    6666666


Q ss_pred             HHHHHHHHHHHhhh
Q 021109          290 WSLLWRHILFDGSN  303 (317)
Q Consensus       290 ~~~~~~~l~~~~~~  303 (317)
                      .+.++++++++...
T Consensus        87 ~~~~~g~~~~~~~~  100 (475)
T TIGR00924        87 IVLMLGHFMLAMSI  100 (475)
T ss_pred             HHHHHHHHHHHhcc
Confidence            67777777665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11663 regulatory protein UhpC; Provisional

Probab=94.11  E-value=0.14  Score=50.21  Aligned_cols=80  Identities=16%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL  293 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~  293 (317)
                      -++.+++.+++.......+-.-+.++.++++.+.  .....++..+...++++..|.++||+++|    |...++.++.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~~~~~~~~~~   99 (434)
T PRK11663         24 ILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNAR----YFMGIGLIATG   99 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCc----hhHHHHHHHHH
Confidence            4444444444433332233334556777777763  35688899999999999999999999987    44444444444


Q ss_pred             HHHHHH
Q 021109          294 WRHILF  299 (317)
Q Consensus       294 ~~~l~~  299 (317)
                      ++.+++
T Consensus       100 ~~~~~~  105 (434)
T PRK11663        100 IINILF  105 (434)
T ss_pred             HHHHHH
Confidence            444433

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=94.09  E-value=0.086  Score=51.16  Aligned_cols=77  Identities=14%  Similarity=0.073  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS  291 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~  291 (317)
                      +++||.+++..++..-...++...+..+.++++.++  ....++...+...++-...|.++||++||    |.+..+.++
T Consensus         2 ~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr----~vl~~~~~~   77 (393)
T PRK11195          2 SKGFYAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKG----RVMFIANGI   77 (393)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCc----hhhHHHHHH
Confidence            458999988877755443344444555667776654  24567788888999999999999999998    555333333


Q ss_pred             HHH
Q 021109          292 LLW  294 (317)
Q Consensus       292 ~~~  294 (317)
                      ..+
T Consensus        78 ~~~   80 (393)
T PRK11195         78 KLL   80 (393)
T ss_pred             HHH
Confidence            333

>PRK03699 putative transporter; Provisional

Probab=93.87  E-value=0.1  Score=50.27  Aligned_cols=64  Identities=14%  Similarity=0.182  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+|.+.+..++.......+.+-...+.+ ..+.+  +.....+++.+++.+||+..|.++||+++|
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  271 (394)
T PRK03699        205 IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQ  271 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchh
Confidence            46787777766655443333444555664 45665  345678899999999999999999999887

>TIGR01272 gluP glucose/galactose transporter

Probab=93.79  E-value=0.13  Score=48.49  Aligned_cols=69  Identities=19%  Similarity=0.128  Sum_probs=54.6

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH---hCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA---LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a---~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..++.+.+|+..+.+++-.|+...+.+.......+   ++.+  ..+...+.+..+-.+||++.+.++||++++
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~  208 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQG  208 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            46778899999999998888877766656655543   2444  346789999999999999999999999876

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=93.72  E-value=0.2  Score=51.93  Aligned_cols=93  Identities=15%  Similarity=0.112  Sum_probs=62.5

Q ss_pred             hhhHHHHHHHHHHHhhhhh---heee-cchhHHHHHhCCCch-hhHHHHHhhhhcccccccccchhhhhccCCCcchHHH
Q 021109          213 VKADFWLLWFVYFLGVGAG---VTVL-NNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDC  287 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~G---l~~i-~n~~~i~~a~~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~  287 (317)
                      +++.|+..+..+.+..-+.   +..- +-+.+|.+++|.++. +.+++..++.++++-...|-+||.+|||    .....
T Consensus        38 ~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr----~~~i~  113 (599)
T PF06609_consen   38 RSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRR----YFFII  113 (599)
T ss_pred             eCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcch----HHHHH
Confidence            4567777665444433322   2222 225678899988653 5677788888999999999999999986    22266


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHh
Q 021109          288 TAWSLLWRHILFDGSNCLRAFW  309 (317)
Q Consensus       288 ~~~~~~~~~l~~~~~~~~~~~~  309 (317)
                      +.++.++|+++-+.+.+.-.+-
T Consensus       114 g~~l~vvG~Iv~atA~~~~~~i  135 (599)
T PF06609_consen  114 GSLLGVVGSIVCATAQNMNTFI  135 (599)
T ss_pred             HHHHHHhHHHHhhcCCcHHHHH
Confidence            7777888887666655544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=93.63  E-value=0.15  Score=46.84  Aligned_cols=79  Identities=20%  Similarity=0.217  Sum_probs=48.8

Q ss_pred             HHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHH
Q 021109          218 WLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWR  295 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~  295 (317)
                      |.+....++......+.......+.++.+.+.  .....++..+.+.++.+.+|.++||++||    |.+..+..+..++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r----~~~~~~~~~~~~~   77 (352)
T cd06174           2 LLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRR----RVLLLGLLLFALG   77 (352)
T ss_pred             HHHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCc----hhhHHHHHHHHHH
Confidence            34444443333333333344455556666553  35678888899999999999999999987    3444555555555


Q ss_pred             HHHHH
Q 021109          296 HILFD  300 (317)
Q Consensus       296 ~l~~~  300 (317)
                      ++.+.
T Consensus        78 ~~~~~   82 (352)
T cd06174          78 SLLLA   82 (352)
T ss_pred             HHHHH
Confidence            54443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK10133 L-fucose transporter; Provisional

Probab=93.54  E-value=0.11  Score=51.42  Aligned_cols=70  Identities=17%  Similarity=0.186  Sum_probs=47.8

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ++.+++++||...+..++..+.-....+-.... .+ ..+.+.  .....+...++..+||+..|.+.||+++|
T Consensus       252 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~  325 (438)
T PRK10133        252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH  325 (438)
T ss_pred             HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            577889999987666555544322222222222 23 345553  45688899999999999999999999887

>TIGR00891 2A0112 putative sialic acid transporter

Probab=93.40  E-value=0.19  Score=47.58  Aligned_cols=58  Identities=16%  Similarity=0.198  Sum_probs=41.7

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ...+.++++.++  .....++..+...++.+..|.++||++||    |.+.++.++.+++.++.
T Consensus        35 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r----~~~~~~~~~~~~~~~~~   94 (405)
T TIGR00891        35 LAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRR----LPMVTSIVLFSAGTLAC   94 (405)
T ss_pred             HHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHH
Confidence            345556777653  35688889999999999999999999998    55554545455554443

>PRK12307 putative sialic acid transporter; Provisional

Probab=93.40  E-value=0.13  Score=49.84  Aligned_cols=72  Identities=17%  Similarity=0.216  Sum_probs=49.0

Q ss_pred             CHHhhhhhhHHHHHHHHHH---HhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYF---LGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~---~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..++.++++.+|.+...+.   +..+....+.+......++.+.+.  .....++..+++.+|++.+|.++||++||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~  296 (426)
T PRK12307        220 SMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLK  296 (426)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            4578889989886554332   222222223445555666666653  34567888899999999999999999886

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=93.39  E-value=0.16  Score=49.66  Aligned_cols=69  Identities=13%  Similarity=0.073  Sum_probs=51.7

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhC--CC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALG--VN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~--~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++++.+|...+.++|..+.-..+......+.++.+  .+  .+....++..+++.+||+..|+++||+++|
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r  309 (412)
T TIGR02332       237 REIFTPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKER  309 (412)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCcc
Confidence            3455688999988887766554445667777777753  33  234577888999999999999999999875

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03545 putative arabinose transporter; Provisional

Probab=93.35  E-value=0.16  Score=48.73  Aligned_cols=58  Identities=12%  Similarity=0.051  Sum_probs=42.6

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ..++.++++.+.  ....+++..+...++.+.+|.++||++||    |....+.++.+++.+..
T Consensus        32 ~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~   91 (390)
T PRK03545         32 LSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERR----KLLIGLFVLFIASHVLS   91 (390)
T ss_pred             hHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH----HHHHHHHHHHHHHHHHH
Confidence            577888888764  35678888888899999999999999997    55544555555554433

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.31  E-value=0.075  Score=53.51  Aligned_cols=95  Identities=16%  Similarity=0.111  Sum_probs=65.4

Q ss_pred             CCCCHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109          204 EDFKLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQW  280 (317)
Q Consensus       204 ~d~t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  280 (317)
                      .+..++++++++.+|.+|+..++..-+=.++........ +-++++  +...+.++=-+...+-++++|.++|++.+| .
T Consensus       247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~-~  325 (466)
T KOG2532|consen  247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFR-I  325 (466)
T ss_pred             CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc-c
Confidence            466889999999999999988775544444333333333 446665  456777888888999999999999999886 5


Q ss_pred             CcchH------HHHHHHHHHHHHHH
Q 021109          281 YPLCC------DCTAWSLLWRHILF  299 (317)
Q Consensus       281 ~~R~~------~~~~~~~~~~~l~~  299 (317)
                      ++.+.      .++++..++..+.+
T Consensus       326 ls~t~~rkifn~i~~~~~ai~l~~l  350 (466)
T KOG2532|consen  326 LSETTVRKIFNTIAFGGPAVFLLVL  350 (466)
T ss_pred             CchHhHHHHHHhHHHHHHHHHHHee
Confidence            54332      44555555444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=93.27  E-value=0.19  Score=48.29  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          217 FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .|.+++.+++....-..+.+....+.++.|.+.  .....++.++.+.+|++..|.++||+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (406)
T PRK11551        222 TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPR  285 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            344444444433333334445566677777653  45677888899999999999999999886

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=93.27  E-value=0.19  Score=48.27  Aligned_cols=91  Identities=14%  Similarity=-0.026  Sum_probs=53.7

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC  284 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~  284 (317)
                      ++++.+|++.||.+.+..++....-..+.+......++.|.++  .....++..+.+..+++..|.+.||++++    |.
T Consensus       197 ~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~----~~  272 (382)
T PRK11128        197 AWKALLKEPTVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSAR----DL  272 (382)
T ss_pred             hHHHHHcChhHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH----HH
Confidence            4678999999998877655544332223333344446666653  23455566666777777777777776655    44


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 021109          285 CDCTAWSLLWRHILFDG  301 (317)
Q Consensus       285 ~~~~~~~~~~~~l~~~~  301 (317)
                      ..++....+++.+.+..
T Consensus       273 l~~~~~~~~~~~~~~~~  289 (382)
T PRK11128        273 LLLSAICGVVRWGLMGS  289 (382)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            44455555555444433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=93.27  E-value=0.19  Score=47.19  Aligned_cols=72  Identities=19%  Similarity=0.103  Sum_probs=47.6

Q ss_pred             CHHhhhhhhH--HHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKAD--FWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~--Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++.++++.  +|......++..............+. +.++.++  .....++..+.+.++++..|.++||++||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~  285 (394)
T TIGR00883       209 PIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR  285 (394)
T ss_pred             CHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            3456666655  77666665554444333334455555 3455543  34567788899999999999999999987

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=93.26  E-value=0.19  Score=48.15  Aligned_cols=71  Identities=11%  Similarity=0.042  Sum_probs=45.5

Q ss_pred             CHHhhhhhhHHHHHHHHHHHh-hhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLG-VGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~-~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +..+.++++.+|......++. ...+..+ +-+....+..+.+.  ....+++..+.+.+||+..|.++||+++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~  265 (381)
T PRK03633        192 SIWPMLKLRQARLGVNGCIISGIVLGSLY-GLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRL  265 (381)
T ss_pred             CHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcH
Confidence            346678888888654432221 1112111 22344445556553  34678888899999999999999999886

>TIGR00899 2A0120 sugar efflux transporter

Probab=93.24  E-value=0.27  Score=46.21  Aligned_cols=69  Identities=17%  Similarity=0.159  Sum_probs=44.0

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++++++|.++...++..+...++........ +.++.++  .....++..+.+..+++..|.++||++||
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  265 (375)
T TIGR00899       194 GLLASRDTRLLFVACTLMWGCNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKR  265 (375)
T ss_pred             hhhcCcchHHHHHHHHHHHHHHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch
Confidence            456778888877766555543333333333333 4456553  23455566667788999999999999887

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=93.18  E-value=0.17  Score=47.23  Aligned_cols=59  Identities=14%  Similarity=0.098  Sum_probs=42.4

Q ss_pred             hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG  301 (317)
Q Consensus       239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~  301 (317)
                      ..+.++++.+.  .....++..+...++.+..|.++||++||    |.+.++.++.+++.+++..
T Consensus        19 ~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881        19 PYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPR----VFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             HHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCe----ehhHHHHHHHHHHHHHHHH
Confidence            34566777653  45788899999999999999999999987    4444555555555544433

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=93.17  E-value=0.14  Score=48.25  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=47.9

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++.++++.+|.+.+...+..+....+......+.+ ..+.+.  .....++..+...+|++..|.++||+++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~  272 (385)
T TIGR00710       199 FLLLLKSKMFWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAK  272 (385)
T ss_pred             HHHHHcCchhHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            456778888888776655544433333333333443 455543  34567778889999999999999999886

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=93.10  E-value=1.2  Score=45.13  Aligned_cols=94  Identities=12%  Similarity=0.002  Sum_probs=62.8

Q ss_pred             CCCCHHhhhhhh----HHHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhh
Q 021109          204 EDFKLGEAFVKA----DFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYV  276 (317)
Q Consensus       204 ~d~t~~~~l~t~----~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~  276 (317)
                      .+.+++|.++++    ..++.....++..-+|...++- ...|.++.|.+.  +.......++.|....+.+.++-||+|
T Consensus       254 ~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~g  333 (485)
T KOG0569|consen  254 KQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLG  333 (485)
T ss_pred             cCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            466889998863    3556666677777778775544 344667777763  344566778889999999999999999


Q ss_pred             ccCCCcchH-HHHHHHHHHHHHHHHhh
Q 021109          277 SSQWYPLCC-DCTAWSLLWRHILFDGS  302 (317)
Q Consensus       277 ~~~~~~R~~-~~~~~~~~~~~l~~~~~  302 (317)
                      |     |++ ..+..++++..+++...
T Consensus       334 R-----RpLll~~~~~~~~~~~~~~~~  355 (485)
T KOG0569|consen  334 R-----RPLLLISLSLMAVALLLMSIA  355 (485)
T ss_pred             C-----cHHHHHHHHHHHHHHHHHHHH
Confidence            8     556 44444444444444433

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=92.97  E-value=0.22  Score=47.72  Aligned_cols=70  Identities=11%  Similarity=0.101  Sum_probs=46.7

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ++.++++.+|...+...+.......+.+-...+. +.+|.++  .....++.++.+.+|++..|.+.||++||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~  269 (392)
T PRK10473        197 SESLLNRFFLSRLVITTLSVTVILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPR  269 (392)
T ss_pred             HHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            4677888888776665554444333332222333 3456653  34567788889999999999999999886

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=92.82  E-value=0.21  Score=48.69  Aligned_cols=56  Identities=11%  Similarity=-0.106  Sum_probs=39.2

Q ss_pred             HHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109          242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG  301 (317)
Q Consensus       242 ~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~  301 (317)
                      .++++.+.  ..+..+++.++.++|.+..|.++||++||    |...+..++..++.++.+.
T Consensus        35 ~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~   92 (412)
T TIGR02332        35 GKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR----RWIAGIMVLWGIASTATMF   92 (412)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH----HHHHHHHHHHHHHHHHHHH
Confidence            34555543  35688899999999999999999999997    4444455555555544443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00889 2A0110 nucleoside transporter

Probab=92.65  E-value=0.1  Score=51.16  Aligned_cols=85  Identities=9%  Similarity=-0.067  Sum_probs=53.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC----------chhhHHHHHhhhhcccccccccchhhhhc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN----------DTTELLCLFSLCNFAGRLGSGVLSEHYVS  277 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~----------~~~~~vsl~si~n~~GRl~~G~lsD~~~~  277 (317)
                      ..+.+|++.||.+++..++....-..+........++.+.+          .....+++.++....+++..|.++||+++
T Consensus       201 ~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~  280 (418)
T TIGR00889       201 AFILFKNKRMAIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGI  280 (418)
T ss_pred             HHHHhcCCCeeeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            45688999999888776665332211112222223344432          23568888889999999999999999998


Q ss_pred             cCCCcchHHHHHHHHHHHH
Q 021109          278 SQWYPLCCDCTAWSLLWRH  296 (317)
Q Consensus       278 ~~~~~R~~~~~~~~~~~~~  296 (317)
                      |    +.+.++.++.+++.
T Consensus       281 r----~~l~~~~~~~~v~~  295 (418)
T TIGR00889       281 K----KVMLLSLVAWALRF  295 (418)
T ss_pred             H----HHHHHHHHHHHHHH
Confidence            6    44444444444443

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00897 2A0118 polyol permease family

Probab=92.57  E-value=0.19  Score=48.66  Aligned_cols=79  Identities=18%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             hhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109          213 VKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW  290 (317)
Q Consensus       213 ~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~  290 (317)
                      ++...|.+...+.+..+.+.. .+-...+.++++.+.  ....+++..++..++.+..|.+.||++||    |.+..+..
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k----~~l~~~~~   86 (402)
T TIGR00897        12 PLNLLWGYIGVVVFMTGDGLE-QGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPL----KTMMIGLL   86 (402)
T ss_pred             CchhhHHHHHHHHHHHhhhhH-HHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcH----HHHHHHHH
Confidence            344455555555555555533 334556667887763  46788999999999999999999999998    55544444


Q ss_pred             HHHHHH
Q 021109          291 SLLWRH  296 (317)
Q Consensus       291 ~~~~~~  296 (317)
                      +.+++.
T Consensus        87 ~~~~~~   92 (402)
T TIGR00897        87 LWCVGH   92 (402)
T ss_pred             HHHHHH
Confidence            444443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=92.43  E-value=0.41  Score=47.41  Aligned_cols=66  Identities=17%  Similarity=0.173  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHhhhhhheeecc----hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNN----LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQW  280 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n----~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  280 (317)
                      ..+|..+...+++...-.+.-+|    ...+.++++.+.  ..+..+.+.+..+++.+..|.++||+++|+.
T Consensus        25 ~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~   96 (467)
T PRK09556         25 KPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF   96 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch
Confidence            34666666555554433222222    344667777653  3567888899999999999999999999843

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=92.31  E-value=0.27  Score=49.05  Aligned_cols=40  Identities=15%  Similarity=0.093  Sum_probs=31.0

Q ss_pred             hHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          239 AQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       239 ~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.++++.+..  ....+...++..+|.+..|.++||++||
T Consensus        60 ~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r  101 (476)
T PLN00028         60 PIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPR  101 (476)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Confidence            456667777533  3456677788889999999999999987

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.21  E-value=0.2  Score=50.41  Aligned_cols=70  Identities=16%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.+|+++-|++-+.++|..|.=.-..+-..+..++. +++.  .....+.++...++|.+.|+++||++++
T Consensus       245 ~~~vlk~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~  316 (462)
T PRK15034        245 QLPVLQRLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV  316 (462)
T ss_pred             HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence            46789999999998888887765433333344444442 2222  2234556788999999999999999987

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=92.19  E-value=0.35  Score=47.74  Aligned_cols=49  Identities=10%  Similarity=-0.039  Sum_probs=35.2

Q ss_pred             CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109          246 GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       246 ~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~  298 (317)
                      +.+.  .....+...++..+|.+.+|.++||++||    |....+.++.+++.++
T Consensus        59 g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k----~~l~~~~~~~~i~~~~  109 (452)
T PRK11273         59 GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR----VFLPAGLILAAAVMLF  109 (452)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCc----hhHHHHHHHHHHHHHH
Confidence            5543  35678899999999999999999999998    4444444444444433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=92.13  E-value=0.34  Score=48.07  Aligned_cols=57  Identities=12%  Similarity=0.062  Sum_probs=38.9

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~  298 (317)
                      ..++.++++.+.  .....++..+...++..++|.++||++||    |.+..+..+.+++.++
T Consensus        42 ~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~~~~~~~~~~~  100 (455)
T TIGR00892        42 FKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCR----PVVIAGGLLASLGMIL  100 (455)
T ss_pred             HHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCch----HHHHhhHHHHHHHHHH
Confidence            456667777653  35677777788888999999999999997    4444444444444443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=92.11  E-value=0.31  Score=46.67  Aligned_cols=64  Identities=14%  Similarity=0.095  Sum_probs=45.9

Q ss_pred             eeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109          233 TVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       233 ~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      ++..-..++.++++.++.  ....++..+...++.+..|.++||++||    |.+.++..+..++.+++.
T Consensus        21 ~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r----~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473         21 MYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRK----PVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCCh----HHHHHHHHHHHHHHHHHH
Confidence            445567778888887643  4577888889999999999999999986    444445555555544443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=92.02  E-value=0.52  Score=47.47  Aligned_cols=84  Identities=8%  Similarity=0.053  Sum_probs=51.6

Q ss_pred             hhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHH
Q 021109          212 FVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCT  288 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~  288 (317)
                      +..+.+|+-++.+..+...=.+.---..++.+ +++.+.  ...++++..+..+++|+..|.+.||+|.|    |...++
T Consensus        31 ~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R----~v~~~~  106 (462)
T PRK15034         31 IARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGR----RWTVFS  106 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHH
Confidence            34446777776665544333222222233333 466653  46788999999999999999999999987    444444


Q ss_pred             HHHHHHHHHHH
Q 021109          289 AWSLLWRHILF  299 (317)
Q Consensus       289 ~~~~~~~~l~~  299 (317)
                      .++.++..+..
T Consensus       107 ~ll~~i~~~~~  117 (462)
T PRK15034        107 TAILIIPCVWL  117 (462)
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>PRK11043 putative transporter; Provisional

Probab=91.92  E-value=0.36  Score=46.38  Aligned_cols=61  Identities=20%  Similarity=0.118  Sum_probs=43.0

Q ss_pred             eeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109          233 TVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI  297 (317)
Q Consensus       233 ~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l  297 (317)
                      ++.-...++.++++.++  .....++..+...+|.+.+|.++||++||    |....+..+..++.+
T Consensus        24 ~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~   86 (401)
T PRK11043         24 MYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRK----PVLLAGLSLFALGSL   86 (401)
T ss_pred             HHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCc----HHHHHHHHHHHHHHH
Confidence            44455666777887764  35688899999999999999999999997    444333333444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=91.84  E-value=0.13  Score=49.92  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=46.8

Q ss_pred             hhhhhHHHHHHHHHHHhh-hhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCC
Q 021109          211 AFVKADFWLLWFVYFLGV-GAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWY  281 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~-g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~  281 (317)
                      ..|+++|+.+++..++.. +.+.. .--+..+.++++.+.  .....+...+...++.+..|.++||++||+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l   85 (417)
T PRK10489         13 LKTHPAFRAVFIARFISIFGLGLL-GVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLI   85 (417)
T ss_pred             HHhCCChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEE
Confidence            346778887777643333 33332 222344556665543  35688888999999999999999999998543

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=91.83  E-value=0.36  Score=46.30  Aligned_cols=47  Identities=13%  Similarity=0.117  Sum_probs=35.8

Q ss_pred             HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS  291 (317)
Q Consensus       241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~  291 (317)
                      +.++++.++  .....++..+...++.+..|.++||++||    |.+..+.++
T Consensus        42 i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r----~~l~~~~~~   90 (399)
T PRK05122         42 VHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPK----KAVVFGLCG   90 (399)
T ss_pred             HHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCc----chHHHHHHH
Confidence            556677654  35688899999999999999999999998    555444333

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=91.78  E-value=0.55  Score=46.03  Aligned_cols=39  Identities=15%  Similarity=0.041  Sum_probs=30.9

Q ss_pred             HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      ..++.+.+.  .....++..++..+|.+..|.++||++||+
T Consensus        52 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~   92 (438)
T TIGR00712        52 YLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV   92 (438)
T ss_pred             HHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce
Confidence            344556553  356788899999999999999999999873

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=91.70  E-value=0.44  Score=43.69  Aligned_cols=83  Identities=22%  Similarity=0.177  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS  291 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~  291 (317)
                      +.+|.+.+..++.......+......+.++. +.++  .....++..+.+.+|++.+|.++||++||+.   ...++..+
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~  251 (352)
T cd06174         175 RLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRL---LLLIGLLL  251 (352)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHH
Confidence            6777777777776666666666666666665 5443  3567788889999999999999999998731   44444444


Q ss_pred             HHHHHHHHH
Q 021109          292 LLWRHILFD  300 (317)
Q Consensus       292 ~~~~~l~~~  300 (317)
                      ..++.+.+.
T Consensus       252 ~~i~~~~~~  260 (352)
T cd06174         252 AALGLLLLA  260 (352)
T ss_pred             HHHHHHHHH
Confidence            454444333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=91.60  E-value=0.32  Score=47.69  Aligned_cols=62  Identities=13%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             cchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHh
Q 021109          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDG  301 (317)
Q Consensus       236 ~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~  301 (317)
                      .....+.++++.+.  .....+...+++.++.+..|.++||++||    |.+.++..+.+++.++...
T Consensus        23 ~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~~~   86 (485)
T TIGR00711        23 VAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTR----RLFLISTFAFTLGSLLCGV   86 (485)
T ss_pred             HHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcH----HHHHHHHHHHHHHHHHHhC
Confidence            34566777887653  45788899999999999999999999987    5555555555655554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK12307 putative sialic acid transporter; Provisional

Probab=91.52  E-value=0.46  Score=45.91  Aligned_cols=58  Identities=16%  Similarity=0.003  Sum_probs=41.2

Q ss_pred             hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      ..|.++++.++  .....++..+...+|.+.+|.++||++||    +...++.++.+++.++.+
T Consensus        42 ~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         42 YLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRK----PLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHHH
Confidence            44556777664  35678888899999999999999999987    444555555555544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=91.22  E-value=0.58  Score=45.75  Aligned_cols=89  Identities=17%  Similarity=0.144  Sum_probs=60.2

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc-hhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND-TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC  284 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~-~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~  284 (317)
                      .+++..++++|+.++...++...+-.+.........+.. +.++ .+.+..+..+.+.++-++++.++||++||    |.
T Consensus       217 ~~~~~~~nr~~~~l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~----~~  292 (428)
T PF13347_consen  217 SLRSLFRNRPFRILLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKK----KV  292 (428)
T ss_pred             chhhhcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccce----ee
Confidence            457888899999988888775444444333444444543 4332 34566677888999999999999999998    56


Q ss_pred             HHHHHHHHHHHHHHH
Q 021109          285 CDCTAWSLLWRHILF  299 (317)
Q Consensus       285 ~~~~~~~~~~~~l~~  299 (317)
                      +..+.++.+++++.+
T Consensus       293 ~~~~~~~~~~~~~~~  307 (428)
T PF13347_consen  293 YIIGLLLAALGFLLL  307 (428)
T ss_pred             hhhhHHHHHHHHHHH
Confidence            655555555555433

>TIGR00893 2A0114 d-galactonate transporter

Probab=91.02  E-value=0.21  Score=46.47  Aligned_cols=41  Identities=17%  Similarity=0.298  Sum_probs=33.1

Q ss_pred             hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      ..+.++++.++  .....++..+.+.++.+..|.++||++||+
T Consensus        18 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~   60 (399)
T TIGR00893        18 PMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARK   60 (399)
T ss_pred             HHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcce
Confidence            34556667653  357888999999999999999999999873

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=90.83  E-value=0.39  Score=46.27  Aligned_cols=71  Identities=11%  Similarity=-0.143  Sum_probs=44.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.++++.+|.+.+.+++..............+. +.++.+..  ........++..+|++..|.++||+++|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~  281 (406)
T PRK15402        208 YKLVLKNRRFVAGALALGLVSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLR  281 (406)
T ss_pred             HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            35678889999887766554433222222233333 34555532  2344455667889999999999999876

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=90.77  E-value=0.42  Score=48.25  Aligned_cols=89  Identities=18%  Similarity=0.110  Sum_probs=53.0

Q ss_pred             hhhhhh-HHHHHHHHHHHhhhhhheeecchhHHH-HHhCCCch--hhHHHHHhhhhcccccccccchhh-hhccCCCcch
Q 021109          210 EAFVKA-DFWLLWFVYFLGVGAGVTVLNNLAQIG-VALGVNDT--TELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLC  284 (317)
Q Consensus       210 ~~l~t~-~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~  284 (317)
                      +.++.+ .+|.++...++...+--.+...+.... +.+|.++.  ...++..........+.+|+++|| ++||    |.
T Consensus        15 ~~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r----~~   90 (500)
T PRK09584         15 NAFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTK----RV   90 (500)
T ss_pred             hhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH----HH
Confidence            444555 589988877765544322333333333 56777643  334444444444445688999999 5987    56


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 021109          285 CDCTAWSLLWRHILFDGS  302 (317)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~  302 (317)
                      ...+.+++++++++++.+
T Consensus        91 ~~~g~~~~~ig~~l~~~~  108 (500)
T PRK09584         91 IMLGAIVLAIGYALVAWS  108 (500)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            666666666666655443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=90.75  E-value=0.56  Score=45.56  Aligned_cols=54  Identities=9%  Similarity=-0.076  Sum_probs=35.8

Q ss_pred             HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~  298 (317)
                      +.+.+|.+.  ..+..++..+...+.++..|.++||++||    |....+..+..++.+.
T Consensus        37 ~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k----~~l~~~~~~~~~~~~~   92 (400)
T PRK11646         37 FVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAK----PMIVTGMLMRAAGFAT   92 (400)
T ss_pred             HHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCch----HHHHHHHHHHHHHHHH
Confidence            345667653  34567777778888899999999999987    4444444444444433

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=90.73  E-value=0.29  Score=45.23  Aligned_cols=55  Identities=16%  Similarity=0.080  Sum_probs=40.3

Q ss_pred             HHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109          240 QIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       240 ~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~  298 (317)
                      .+.++++.+.  .....++..+.+.++.+..|.++||++||    |...++.++.+++.++
T Consensus        22 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~l~~~~~~~~~~~~~   78 (352)
T PF07690_consen   22 YLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRR----RVLIIGLLLFALGSLL   78 (352)
T ss_dssp             HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCe----eeEeehhhhhhhHHHH
Confidence            4566677553  45788889999999999999999999987    5455666666666333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=90.67  E-value=0.76  Score=44.00  Aligned_cols=38  Identities=24%  Similarity=0.168  Sum_probs=29.2

Q ss_pred             HHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       241 i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..++.+.+......+++.++..+||+..|.+.||+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~  279 (399)
T PRK05122        242 YYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGL  279 (399)
T ss_pred             HHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34444544445667888899999999999999999875

>TIGR00895 2A0115 benzoate transport

Probab=90.66  E-value=0.57  Score=44.00  Aligned_cols=58  Identities=14%  Similarity=-0.009  Sum_probs=39.8

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ...+.+.++.+.  .....++..+...+|.+..|.++||++||    |.+..+.++.+++.+++
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~~~~~~   99 (398)
T TIGR00895        40 APAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRK----RVLLWSILLFSVFTLLC   99 (398)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhH----HHHHHHHHHHHHHHHHH
Confidence            445566667653  34677788889999999999999999987    44444444444444433

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=90.33  E-value=0.79  Score=44.29  Aligned_cols=86  Identities=13%  Similarity=0.050  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhhhhhhee--ec-chhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTV--LN-NLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAW  290 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~--i~-n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~  290 (317)
                      .-|++...++.+.-...++  ++ -...+.++++.++  ....+++..++..++-+..|.++||++||    |....+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r----~~l~~~~~   82 (393)
T PRK09705          7 LNFMLLVLVLIGLNMRPLLTSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSER----RSVAISLL   82 (393)
T ss_pred             hHHHHHHHHHHHHHcchhhhccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCch----HHHHHHHH
Confidence            3466666555555444332  12 1334566677653  35688888889999999999999999998    66677777


Q ss_pred             HHHHHHHHHHhhhhH
Q 021109          291 SLLWRHILFDGSNCL  305 (317)
Q Consensus       291 ~~~~~~l~~~~~~~~  305 (317)
                      +.+++.++.+.+.+.
T Consensus        83 l~~~~~~~~~~a~~~   97 (393)
T PRK09705         83 LIAVGALMRELYPQS   97 (393)
T ss_pred             HHHHHHHHHHHCcch
Confidence            777777766555443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=90.32  E-value=0.44  Score=45.04  Aligned_cols=61  Identities=16%  Similarity=0.150  Sum_probs=43.6

Q ss_pred             eecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHH
Q 021109          234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       234 ~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~  298 (317)
                      +.-....+.++++.+.  .....++..+...+|++..|.++||++||    |.+..+..+.+++.++
T Consensus        10 ~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~i~~~~   72 (377)
T PRK11102         10 YLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRK----PVILGGTLVFALAAVA   72 (377)
T ss_pred             HhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCCh----HHHHHHHHHHHHHHHH
Confidence            3455667778887763  35678899999999999999999999986    4444444444444443

>TIGR00901 2A0125 AmpG-related permease

Probab=90.22  E-value=0.42  Score=45.04  Aligned_cols=71  Identities=14%  Similarity=0.111  Sum_probs=42.8

Q ss_pred             HHhhhhhhH---HHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKAD---FWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~---Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+.++++.   +|.+.+..++...+............+++|.+..  ....++.+ +...+|.+++|.++||+++|
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~  275 (356)
T TIGR00901       199 IREFFQRKNMIQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL  275 (356)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            345555554   6666655444333322333444555566776543  23444444 56789999999999999987

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=90.17  E-value=0.45  Score=45.99  Aligned_cols=68  Identities=19%  Similarity=0.292  Sum_probs=45.8

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch-hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT-TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~-~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +++.++++++|.+++.++|..+.-..+.+-+.++.++.+++.. ....++..   ..|-++.|+++||+.|+
T Consensus       185 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~---~~g~~g~~~~~d~~~r~  253 (368)
T TIGR00903       185 FGALAGRKDLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDIAGDAVALAI---LAGLIGVAVIPDRVARA  253 (368)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHH---HHHHHHHHHhhHHhhhh
Confidence            4688999999999998888766655454446677776665432 22333333   34445569999999765

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=90.14  E-value=0.55  Score=44.42  Aligned_cols=71  Identities=8%  Similarity=-0.026  Sum_probs=47.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.++++.+|...+..++..+.-..+........+ ..+.+.  .....++.++...+|++..|.+.||+++|
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~  260 (377)
T PRK11102        187 FASLFRHKRVLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGAL  260 (377)
T ss_pred             HHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            346677778887666555444333333333333443 345543  34677888899999999999999999987

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=90.09  E-value=0.51  Score=51.88  Aligned_cols=69  Identities=16%  Similarity=0.121  Sum_probs=45.8

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc----hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND----TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~----~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+++.+|+.+++..++..-...++..-+.. +...++.+.    .++..+++.+...++.+.+|.++||++||
T Consensus         4 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk   77 (1146)
T PRK08633          4 NLLKIIGFLPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKN   77 (1146)
T ss_pred             chhhhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHH
Confidence            5688889999998777754333322222222 222333332    24566778888999999999999999998

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=89.88  E-value=1  Score=44.45  Aligned_cols=71  Identities=17%  Similarity=0.226  Sum_probs=59.6

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +..+.+|+++-|..+++.++..+...+.-.=++++.++. |.+.  .+...-+++++..+|-++.|.++|| +.+
T Consensus       203 ~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~  276 (394)
T COG2814         203 TLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPR  276 (394)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cch
Confidence            457899999999999999999999999888888888876 4443  3567778999999999999999999 544

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=89.86  E-value=0.61  Score=46.74  Aligned_cols=59  Identities=12%  Similarity=0.041  Sum_probs=43.0

Q ss_pred             hhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       238 ~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      +.+|.++++.+  +....++.+.+..+.+-+.+|.++||++||    |....+.++..++.++..
T Consensus        29 ~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk----~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         29 APTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFK----RLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHH
Confidence            56778888765  346788888999999999999999999998    555445555555544433

>TIGR00895 2A0115 benzoate transport

Probab=89.80  E-value=0.77  Score=43.11  Aligned_cols=64  Identities=23%  Similarity=0.287  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+|.+++.+++.......+.+....+.+..+.+.  .....++.++++.+|+++.|.++||+++|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  315 (398)
T TIGR00895       250 RITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPR  315 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchH
Confidence            34555555554433332222333344555666653  35678888999999999999999999875

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=89.69  E-value=0.68  Score=45.30  Aligned_cols=72  Identities=8%  Similarity=0.044  Sum_probs=47.6

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhhe-eecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ++++.++++.+|.+.+.+.+....+.. +..-..++.+ ..+.+.  .....++..+...++....|.++||++||
T Consensus       234 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr  309 (432)
T PRK10406        234 SLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRR  309 (432)
T ss_pred             cHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            467888899999877665544333222 2233444443 456653  34566677778888899999999999987

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=88.99  E-value=0.65  Score=44.66  Aligned_cols=87  Identities=11%  Similarity=-0.016  Sum_probs=50.3

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeec-chhHHHHHhC----CCc--hhhHHHHHhhhhcccccccccchhhhhccC
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQIGVALG----VND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQ  279 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i~~a~~----~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~  279 (317)
                      +.++.+|++++|.+.+..++.. ....... -.....++..    .+.  .....++..+.+.++.+..|.+.||+++| 
T Consensus       207 ~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~-  284 (396)
T TIGR00882       207 LALELFRQRKFWMFVLYVVGVA-CVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAK-  284 (396)
T ss_pred             HHHHHHcCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence            4578899999987765443322 2222121 1222233321    111  23466777788899999999999999987 


Q ss_pred             CCcchHHHHHHHHHHHHHH
Q 021109          280 WYPLCCDCTAWSLLWRHIL  298 (317)
Q Consensus       280 ~~~R~~~~~~~~~~~~~l~  298 (317)
                         |...++..+.+++..+
T Consensus       285 ---~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       285 ---NALLIAGTIMSVRIIG  300 (396)
T ss_pred             ---hhHHHHHHHHHHHHHH
Confidence               4344444444444443

>PRK12382 putative transporter; Provisional

Probab=88.76  E-value=1.3  Score=42.34  Aligned_cols=38  Identities=13%  Similarity=-0.021  Sum_probs=28.9

Q ss_pred             HHHHhCCCchhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          241 IGVALGVNDTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       241 i~~a~~~~~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..++.+.++.....+..++.+.+|++..|.++||+++|
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~  279 (392)
T PRK12382        242 YFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGV  279 (392)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            33455554445566778888899999999999999986

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=88.72  E-value=1.1  Score=44.28  Aligned_cols=85  Identities=14%  Similarity=0.056  Sum_probs=69.4

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      ...|.+-+..|+...+..+..+-+.+|+++++.+.  +...+|+.+..-.+|-.....+.||+.||    |.+.....++
T Consensus        13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr----~lLl~~l~lF   88 (394)
T COG2814          13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERR----RLLLGLLALF   88 (394)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchH----HHHHHHHHHH
Confidence            35667777788888889999999999999999874  45799999999999999999999999997    6666666677


Q ss_pred             HHHHHHHHhhh
Q 021109          293 LWRHILFDGSN  303 (317)
Q Consensus       293 ~~~~l~~~~~~  303 (317)
                      .+++++-+.+.
T Consensus        89 i~~n~l~alAp   99 (394)
T COG2814          89 IVSNLLSALAP   99 (394)
T ss_pred             HHHHHHHHHhc
Confidence            77776544443

>PRK10133 L-fucose transporter; Provisional

Probab=88.30  E-value=0.9  Score=44.93  Aligned_cols=80  Identities=19%  Similarity=0.128  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHhhhhhheeecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLL  293 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~  293 (317)
                      .|+.+++.++...-.-.+...-..++.++++.++  ..+..+.+.+...++-+..|.+.||++||    |...++..+.+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r----~~l~~g~~~~~  102 (438)
T PRK10133         27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK----AGIITGLFLYA  102 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHH
Confidence            5666665554433333333334455656677764  35688899999999999999999999998    66666666666


Q ss_pred             HHHHHH
Q 021109          294 WRHILF  299 (317)
Q Consensus       294 ~~~l~~  299 (317)
                      ++.+++
T Consensus       103 ~~~~l~  108 (438)
T PRK10133        103 LGAALF  108 (438)
T ss_pred             HHHHHH
Confidence            666553

>PRK15075 citrate-proton symporter; Provisional

Probab=87.64  E-value=1.1  Score=43.80  Aligned_cols=67  Identities=12%  Similarity=0.042  Sum_probs=41.3

Q ss_pred             hhhhHHHHHHHHHHHhhhhhheeecc-hhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          212 FVKADFWLLWFVYFLGVGAGVTVLNN-LAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       212 l~t~~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .+.+..|.+.....+....+...+.+ ...+.+. +|.+.  ......+.++++.+|++..|.++||++||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r  304 (434)
T PRK15075        234 AANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRR  304 (434)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            44555555433333333333333333 4555554 56653  23456678889999999999999999986

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=87.46  E-value=1.1  Score=49.28  Aligned_cols=71  Identities=20%  Similarity=0.100  Sum_probs=50.2

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCch---hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVNDT---TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~~---~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+.++++.+|.+.+..++......++........+ .++.+..   ..+.++..++..+|.+++|.++|+++++
T Consensus       225 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~  299 (1146)
T PRK08633        225 LKLLRSDRVLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIEL  299 (1146)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEc
Confidence            456778888898877776666655555555555554 3565533   4567778888899999999999988765

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=87.31  E-value=0.56  Score=45.38  Aligned_cols=84  Identities=12%  Similarity=0.039  Sum_probs=49.0

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHH-HH-hCCC-chhhHHHHHhhhhcccccccccchhhhhccCCCcch
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIG-VA-LGVN-DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLC  284 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~-~a-~~~~-~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~  284 (317)
                      +++.++++.||.+.+..++...+.. ..+...... +. ++.+ ......++..+...+|.+.+|.++||++||    +.
T Consensus       215 ~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~----~~  289 (437)
T TIGR00792       215 FKALFKNDQLLILCLAYLFYNLAFN-IKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRK----IL  289 (437)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHH-HHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HH
Confidence            4567889999988776655433322 222221111 11 1211 123455667888999999999999999986    44


Q ss_pred             HHHHHHHHHHHH
Q 021109          285 CDCTAWSLLWRH  296 (317)
Q Consensus       285 ~~~~~~~~~~~~  296 (317)
                      +.++..+.+++.
T Consensus       290 ~~~~~~~~~~~~  301 (437)
T TIGR00792       290 FAGGILLMVLGY  301 (437)
T ss_pred             HHHHHHHHHHHH
Confidence            544444444443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00899 2A0120 sugar efflux transporter

Probab=87.31  E-value=0.96  Score=42.48  Aligned_cols=38  Identities=5%  Similarity=-0.137  Sum_probs=29.5

Q ss_pred             HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          241 IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       241 i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++++.+.  .....++..+...++....|.++||++||
T Consensus        24 l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r   63 (375)
T TIGR00899        24 LSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDR   63 (375)
T ss_pred             HHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            345566653  34677788888899999999999999987

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=87.25  E-value=1.6  Score=41.77  Aligned_cols=40  Identities=15%  Similarity=0.135  Sum_probs=32.8

Q ss_pred             hHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          239 AQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       239 ~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+.++++.++  .....+...++..+|.+..|.++||++||
T Consensus        39 ~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r   80 (406)
T PRK11551         39 PRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRK   80 (406)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            34566777653  45688888999999999999999999998

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=86.92  E-value=0.88  Score=46.20  Aligned_cols=54  Identities=15%  Similarity=0.220  Sum_probs=40.8

Q ss_pred             HHhCCCc--hhhHHHHHhhhhcccccccccchhhh-hccCCCcchHHHHHHHHHHHHHHHH
Q 021109          243 VALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY-VSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       243 ~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~-~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      +.+|.++  +....+...+...++.+..|+++||+ |||    |+..++..++.++++++.
T Consensus        38 ~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrr----r~iliG~il~~lg~lll~   94 (493)
T PRK15462         38 NQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNR----MAVMLGALLMAIGHVVLG   94 (493)
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcH----HHHHHHHHHHHHHHHHHH
Confidence            3456653  34577788888899999999999999 887    666667777777776554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=86.69  E-value=1.1  Score=43.05  Aligned_cols=45  Identities=22%  Similarity=0.262  Sum_probs=34.1

Q ss_pred             hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ....++..+...++.+.+|.++||++||    |.+.++.++..++.++.
T Consensus        74 ~~~~~~~~~~~~i~~~~~g~l~d~~grr----~~~~~~~~~~~~~~~~~  118 (481)
T TIGR00879        74 GLVVSIFLVGGFIGALFAGWLSDRFGRK----KSLLIIALLFVIGAILM  118 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhH----HHHHHHHHHHHHHHHHH
Confidence            5688899999999999999999999987    55545444455554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=86.18  E-value=1.1  Score=43.02  Aligned_cols=72  Identities=17%  Similarity=-0.006  Sum_probs=47.5

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++.+|++.+|.+....++...+......-.....++.|.+..  .....+.. +...+|.+..|.+.||++++
T Consensus       200 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~  274 (390)
T TIGR02718       200 SLFRFFRRPLAWSLLALALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW  274 (390)
T ss_pred             HHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            35688888888887776655544333333334455667777643  34445544 46678899999999999986

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PTZ00207 hypothetical protein; Provisional

Probab=86.08  E-value=1.1  Score=46.68  Aligned_cols=81  Identities=11%  Similarity=0.025  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhhhhhheeecch--hHHHHHhCCCchh--hHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          217 FWLLWFVYFLGVGAGVTVLNNL--AQIGVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       217 Fw~l~~~~~~~~g~Gl~~i~n~--~~i~~a~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      +|.+...+.+...+|.++..++  .++.+++|.+...  ...++ ...-+.+-+..|.++||+|+|    +.+.++.++.
T Consensus        27 w~~lva~~~~~~~~g~~y~fsv~s~~L~~~lgls~~~l~~i~sv-g~~~g~~~lp~G~L~Dr~G~R----~vllig~ll~  101 (591)
T PTZ00207         27 FALLVLGAFCSICTSFMYAFNLISGAMQARYNLTQRDLSTITTV-GIAVGYFLLPYSFIYDYLGPR----PIFVLSMTVF  101 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHH
Confidence            4455555555555666665554  5566777776432  22222 222233455689999999986    4446777777


Q ss_pred             HHHHHHHHhh
Q 021109          293 LWRHILFDGS  302 (317)
Q Consensus       293 ~~~~l~~~~~  302 (317)
                      ++++++.+.+
T Consensus       102 ~iG~ll~ala  111 (591)
T PTZ00207        102 CLGTLLFALT  111 (591)
T ss_pred             HHHHHHHHHH
Confidence            7777655553

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=85.35  E-value=1.4  Score=44.45  Aligned_cols=57  Identities=14%  Similarity=-0.000  Sum_probs=40.9

Q ss_pred             HHHhCCCc--hhhHHHHHhhhhcccccccccchhh-hhccCCCcchHHHHHHHHHHHHHHHHhh
Q 021109          242 GVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCCDCTAWSLLWRHILFDGS  302 (317)
Q Consensus       242 ~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~~~~~~~~~~~~l~~~~~  302 (317)
                      .+.+|.++  +...++.+....++.-+.+|+++|| +|||    |+...+.+++.+++++...+
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r----~~~~~g~~~~~~g~~~~~~~  101 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTK----RTIVLGAIVLAIGYFMTGMS  101 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchH----HHHHHHHHHHHHHHHHHHHh
Confidence            34567654  3456666777777777889999999 9998    77777777777777655443

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=85.31  E-value=0.88  Score=45.90  Aligned_cols=56  Identities=14%  Similarity=0.093  Sum_probs=45.7

Q ss_pred             hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHHhhhhHHHHhh
Q 021109          251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFDGSNCLRAFWL  310 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~~  310 (317)
                      +.+++..++.+.+|-+.+|.++|++|||    +++.++.++..+|-++.+.+-.+..+..
T Consensus        92 s~~~s~~~lga~~g~l~~g~l~d~~GRk----~~l~~~~~~~~iG~ii~~~a~~~~~l~~  147 (513)
T KOG0254|consen   92 GLLTSILNLGALVGSLLAGRLGDRIGRK----KTLLLAVVLFLIGAIIIALAPSWYQLIV  147 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            5899999999999999999999999998    6777777777888777776655544443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=85.24  E-value=1.7  Score=42.59  Aligned_cols=81  Identities=12%  Similarity=0.048  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhhhhhheeecc-hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          216 DFWLLWFVYFLGVGAGVTVLNN-LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       216 ~Fw~l~~~~~~~~g~Gl~~i~n-~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      .|+.+...+ +.+|...-+++- ..++.++++.++  .....+...++..++.+..|.+.||++||    |...++.+++
T Consensus         4 ~~~~~~~~f-~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r----~~~~~g~~l~   78 (410)
T TIGR00885         4 PFALITSLF-ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYK----AGILLGLFLY   78 (410)
T ss_pred             HHHHHHHHH-HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHHHHHHHHH
Confidence            355444333 334443323222 234445566653  35677888899999999999999999987    6666777777


Q ss_pred             HHHHHHHHh
Q 021109          293 LWRHILFDG  301 (317)
Q Consensus       293 ~~~~l~~~~  301 (317)
                      +++.+++..
T Consensus        79 ~~g~~l~~~   87 (410)
T TIGR00885        79 ALGAFLFWP   87 (410)
T ss_pred             HHHHHHHHH
Confidence            777766543

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=85.15  E-value=1.7  Score=42.65  Aligned_cols=45  Identities=9%  Similarity=-0.093  Sum_probs=35.5

Q ss_pred             hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ...++...++..+|-+.+|.++||+|||    |...++..+++++.+..
T Consensus        58 ~~~~s~~~ig~~~~~~~~G~l~dr~Grr----~~~~~~~~l~~i~~~~~  102 (479)
T PRK10077         58 GFCVASALIGCIIGGALGGYCSNRFGRR----DSLKIAAVLFFISALGS  102 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHH
Confidence            4678899999999999999999999998    66655555555554433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=84.88  E-value=2.1  Score=40.85  Aligned_cols=27  Identities=7%  Similarity=0.058  Sum_probs=22.4

Q ss_pred             hHHHHHhhhhcccccccccchhhhhcc
Q 021109          252 ELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       252 ~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ...++.++.+.+++...|.++||++||
T Consensus       262 ~~~~~~~l~~~~~~~~~g~l~dr~g~~  288 (408)
T PRK09874        262 MIASVPGVAALLSAPRLGKLGDRIGPE  288 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            345566788889999999999999987

>PRK03893 putative sialic acid transporter; Provisional

Probab=84.78  E-value=1.5  Score=43.35  Aligned_cols=43  Identities=16%  Similarity=0.153  Sum_probs=33.3

Q ss_pred             cchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          236 NNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       236 ~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .....+.+ .+|.+.  .....++.+++..+|++..|+++||++||
T Consensus       296 ~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~  341 (496)
T PRK03893        296 ALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTR  341 (496)
T ss_pred             HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            34455553 566653  45688889999999999999999999887

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=84.78  E-value=2.8  Score=40.52  Aligned_cols=68  Identities=12%  Similarity=0.107  Sum_probs=43.3

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhH-HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhh
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHY  275 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~-i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~  275 (317)
                      .++.++++.+|.+.+..++..+..........+ +.+.+|.+.  .....+..++++.+|++..|.+.||.
T Consensus       209 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~  279 (394)
T PRK10213        209 TFRLLQRPGVMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRS  279 (394)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            467889999999877655544333222233333 334566653  34567777788888888888877763

>PRK10489 enterobactin exporter EntS; Provisional

Probab=84.73  E-value=2.8  Score=40.54  Aligned_cols=85  Identities=14%  Similarity=-0.062  Sum_probs=47.0

Q ss_pred             HhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109          209 GEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC  285 (317)
Q Consensus       209 ~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~  285 (317)
                      +..++++.+|.+++..++....+ .+........+. ++.+.  .....++.++++.+|++..|.++|+..++    |.+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~----~~l  292 (417)
T PRK10489        218 RFLLASPVVGGIALLGGLLTMAS-AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPG----LLM  292 (417)
T ss_pred             HHHHcChHHHHHHHHHHHHHHHH-hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcc----hHH
Confidence            44667777776665444332221 122223334454 56543  34567788888999999999888864332    334


Q ss_pred             HHHHHHHHHHHHH
Q 021109          286 DCTAWSLLWRHIL  298 (317)
Q Consensus       286 ~~~~~~~~~~~l~  298 (317)
                      ..+..+.+++.++
T Consensus       293 ~~~~~~~~~~~~~  305 (417)
T PRK10489        293 LLSTLGSFLAVGL  305 (417)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333444444433

>PRK11043 putative transporter; Provisional

Probab=84.54  E-value=1.5  Score=42.10  Aligned_cols=72  Identities=8%  Similarity=0.036  Sum_probs=44.9

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCCch--hhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVNDT--TELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~~~--~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.++.++++++|...+.+.+..+.-..+.+-...+.++.|.+..  ........++..+|++..+.+.||++++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~  268 (401)
T PRK11043        195 TFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGE  268 (401)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence            35678888999877665554443323333333445556666532  3344455667778888888888888765

>TIGR00896 CynX cyanate transporter

Probab=84.00  E-value=1.7  Score=40.91  Aligned_cols=56  Identities=20%  Similarity=0.082  Sum_probs=40.2

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHI  297 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l  297 (317)
                      +..+.++++.+.  .....++..+...++.+..|.++||++||    |...++.++.+++.+
T Consensus        23 lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~   80 (355)
T TIGR00896        23 LPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEE----RSVAAGLLLIAAGIL   80 (355)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCch----HHHHHHHHHHHHHHH
Confidence            345667777653  45788999999999999999999999997    444444444444433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=83.72  E-value=1.6  Score=42.10  Aligned_cols=56  Identities=11%  Similarity=-0.041  Sum_probs=40.0

Q ss_pred             HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHHHHHHHHHHHH
Q 021109          244 ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTAWSLLWRHILF  299 (317)
Q Consensus       244 a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~~~~~~~~l~~  299 (317)
                      .+|.+.  ..+..++..++.++.-...|.++||.++|++-.|+| .++....+++.+++
T Consensus        29 ~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792        29 VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            345443  346778888999999999999999987776666888 45555555555443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=83.47  E-value=1.7  Score=41.86  Aligned_cols=72  Identities=14%  Similarity=0.082  Sum_probs=43.7

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhhe-eecchhHHHHHhCCCch--hhHHHHHh-hhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVT-VLNNLAQIGVALGVNDT--TELLCLFS-LCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i~~a~~~~~~--~~~vsl~s-i~n~~GRl~~G~lsD~~~~~  278 (317)
                      ++.+.+|++++|.+.+..++....... ...+...+.+..|.+..  ....+..+ +...+|.+..|.+.||+++|
T Consensus       201 ~~~~l~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~  276 (402)
T PRK11902        201 PLRDFFSRRGAWALLLLIVLYKLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLY  276 (402)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            346788999999877765554332221 11222234455666543  23333444 34788899999999999876

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=82.91  E-value=15  Score=40.58  Aligned_cols=72  Identities=25%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++...+++.+|.+.+.+++....+.++......+.+. ++.+.  ...+.+..+++..+|.++.|.++|+..++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~  291 (1140)
T PRK06814        217 LLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITL  291 (1140)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence            34567788899998887777666655555556666654 45543  45678899999999999999998876655

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=82.36  E-value=2.5  Score=40.52  Aligned_cols=83  Identities=16%  Similarity=0.079  Sum_probs=49.7

Q ss_pred             hhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH-HHHH
Q 021109          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC-DCTA  289 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~-~~~~  289 (317)
                      .+-||+++++++|-.-+=.-.|.--....+ .+|.+.  +...-|.+-.-++.---.+|.++||.|++    -.| +.+.
T Consensus       263 ~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n----~~wv~~a~  338 (459)
T KOG4686|consen  263 YPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFN----LWWVASAC  338 (459)
T ss_pred             CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcce----ehhHHHHH
Confidence            468999999888765554444443222333 356653  22344444444555566789999999987    445 4455


Q ss_pred             HHHHHHHHHHH
Q 021109          290 WSLLWRHILFD  300 (317)
Q Consensus       290 ~~~~~~~l~~~  300 (317)
                      +.+..+|..++
T Consensus       339 ~~tl~~H~~l~  349 (459)
T KOG4686|consen  339 ILTLLGHSGLF  349 (459)
T ss_pred             HHHHHHhhhHH
Confidence            55666775443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=81.74  E-value=2.7  Score=42.49  Aligned_cols=64  Identities=17%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             eecchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhh----hhccCCCcchHHH-HHHHHHHHHHHHHh
Q 021109          234 VLNNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEH----YVSSQWYPLCCDC-TAWSLLWRHILFDG  301 (317)
Q Consensus       234 ~i~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~----~~~~~~~~R~~~~-~~~~~~~~~l~~~~  301 (317)
                      ...++..+.+.+|.+.  ....+.+-.+...+.-.+.|.+|||    +|||    |++.+ ......++.+++..
T Consensus        23 ~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR----rp~il~g~~~~~~~l~ll~~   93 (477)
T TIGR01301        23 QLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR----RPFIAAGAALVAFAVILIGF   93 (477)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh----HHHHHHHHHHHHHHHHHHHh
Confidence            3455666777888764  3456677778889999999999995    7777    77743 34445555555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00898 2A0119 cation transport protein

Probab=81.56  E-value=1.6  Score=43.39  Aligned_cols=46  Identities=13%  Similarity=0.029  Sum_probs=34.6

Q ss_pred             hhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109          251 TELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       251 ~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      .+..++..++..+|.+++|.++||+|||    |.+.++.++.+++.++.+
T Consensus       130 ~~~~s~~~~g~~~g~~~~g~l~Dr~Grr----~~~~~~~~~~~i~~~~~~  175 (505)
T TIGR00898       130 DLTQSCFFVGVLLGSFVFGYLSDRFGRK----KVLLLSTLVTAVSGVLTA  175 (505)
T ss_pred             HHHHHHHHHHHHHHHHhHHHhhhhccch----HHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999997    545555555555544433

>PRK09952 shikimate transporter; Provisional

Probab=81.02  E-value=3  Score=40.95  Aligned_cols=68  Identities=10%  Similarity=-0.057  Sum_probs=38.0

Q ss_pred             hhhhhHHHHHHHHHHHhhhhhhe-eecchhHH-HHHhCCCchh--hHHHHHhhhhcccccccccchhhhhcc
Q 021109          211 AFVKADFWLLWFVYFLGVGAGVT-VLNNLAQI-GVALGVNDTT--ELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       211 ~l~t~~Fw~l~~~~~~~~g~Gl~-~i~n~~~i-~~a~~~~~~~--~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      .++++.+|.+.+...+....+.. ........ .+.++.++..  ....+.++.+.+|.+++|.++||++||
T Consensus       245 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr  316 (438)
T PRK09952        245 LLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR  316 (438)
T ss_pred             HHHchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence            56677777664432222222211 22222222 2345554331  233456677888999999999999987

>PRK11010 ampG muropeptide transporter; Validated

Probab=80.07  E-value=2.8  Score=42.14  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=41.7

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeec-chhHH-HHHhCCCch--hhHH-HHHhhhhcccccccccchhhhhcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLN-NLAQI-GVALGVNDT--TELL-CLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~-n~~~i-~~a~~~~~~--~~~v-sl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      +.+.++++.+|.+....++.. .+..... -.... .+..|.+..  .... .+..++..+|.++.|.++||+++|
T Consensus       215 l~~~~~~~~~~~~ll~~~l~~-~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~  289 (491)
T PRK11010        215 LRDFFGRNNAWLILLLIVLYK-LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLF  289 (491)
T ss_pred             HHHHHcCcCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            456777777886665443322 2222112 12233 345676543  3333 344578889999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.7
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.06
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.84
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	94.92
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	94.51
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	94.3
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	94.13
2xut_A	524	Proton/peptide symporter family protein; transport	93.69
2cfq_A	417	Lactose permease; transport, transport mechanism,	93.03
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	88.59
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	85.61

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.70  E-value=0.00015  Score=68.25  Aligned_cols=87  Identities=16%  Similarity=0.157  Sum_probs=66.0

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHH-HHHh-CCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQI-GVAL-GVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYP  282 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~-~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~  282 (317)
                      ++++.+|++.+|...+..++..+....+......+ .++. +.+.  .....++..+.+.+||++.|.++||++||    
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~----  325 (438)
T 3o7q_A          250 SLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPH----  325 (438)
T ss_dssp             HHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----
T ss_pred             hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----
Confidence            44678899999999999888888777777777777 6665 6653  45678888999999999999999999886    


Q ss_pred             chHHHHHHHHHHHHH
Q 021109          283 LCCDCTAWSLLWRHI  297 (317)
Q Consensus       283 R~~~~~~~~~~~~~l  297 (317)
                      |......++.+++.+
T Consensus       326 ~~~~~~~~~~~~~~~  340 (438)
T 3o7q_A          326 KVLAAYALIAMALCL  340 (438)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            444444444444444

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.06  E-value=0.00053  Score=64.58  Aligned_cols=71  Identities=10%  Similarity=0.059  Sum_probs=55.4

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCCc--hhhHHHHHhhhhcccccccccchhhh--hcc
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVND--TTELLCLFSLCNFAGRLGSGVLSEHY--VSS  278 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~--~~~  278 (317)
                      .++.++++.+|.+.+..++.......+......+.++ ++.+.  .....++.++++.+|+++.|.++||+  +||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~  320 (451)
T 1pw4_A          245 MQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  320 (451)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            4678899999999988877766655555666666665 56553  35688889999999999999999998  765

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.84  E-value=0.0042  Score=58.76  Aligned_cols=69  Identities=14%  Similarity=0.116  Sum_probs=50.1

Q ss_pred             hhhhhhHHHHHHHHHHHhhhhhheeecchhHHHH-HhCCC--chhhHHHHHhhhhcccccccccchhhhhcc
Q 021109          210 EAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGV-ALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSS  278 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~-a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~  278 (317)
                      ..+|+++||.+...+++....-.++..-+....+ .++.+  +....+++..+...+|++.+|.++||+|||
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr   73 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR   73 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTC
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence            3678999999888665544333333334444344 45665  345788999999999999999999999998

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=94.92  E-value=0.019  Score=54.73  Aligned_cols=85  Identities=7%  Similarity=0.008  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHHHHH------hCCCc--hhhHHHHHhhhhcccccccccchhh-hhccCCCcchH
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQIGVA------LGVND--TTELLCLFSLCNFAGRLGSGVLSEH-YVSSQWYPLCC  285 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a------~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~-~~~~~~~~R~~  285 (317)
                      +.+|.+++..++....-..+........++      ++.+.  .....++..+.+.+|.+.+|.++|| ++||    |..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r----~~~   88 (491)
T 4aps_A           13 LGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGAR----PAV   88 (491)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHH----HHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch----HHH
Confidence            357777766655544433343444444443      56653  4578899999999999999999999 8997    666


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 021109          286 DCTAWSLLWRHILFDGSN  303 (317)
Q Consensus       286 ~~~~~~~~~~~l~~~~~~  303 (317)
                      .++.++.+++.++++.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~  106 (491)
T 4aps_A           89 FWGGVLIMLGHIVLALPF  106 (491)
T ss_dssp             HHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHHHhh
Confidence            666666777766655543

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=94.51  E-value=0.025  Score=52.89  Aligned_cols=83  Identities=10%  Similarity=-0.094  Sum_probs=53.0

Q ss_pred             hhHHHHHHHHHHHhhhhhheeecchhHHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHH
Q 021109          214 KADFWLLWFVYFLGVGAGVTVLNNLAQIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWS  291 (317)
Q Consensus       214 t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~  291 (317)
                      ...++.+++..++....-.++..-...+.+++ .+  +.....++..+...++.+.+|.++||++||    |.+.++.++
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r----~~l~~~~~~  101 (451)
T 1pw4_A           27 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR----VFLPAGLIL  101 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCch----HHHHHHHHH
Confidence            33444444444433322222233344455555 44  346788999999999999999999999987    555666666


Q ss_pred             HHHHHHHHHh
Q 021109          292 LLWRHILFDG  301 (317)
Q Consensus       292 ~~~~~l~~~~  301 (317)
                      .+++.++++.
T Consensus       102 ~~~~~~~~~~  111 (451)
T 1pw4_A          102 AAAVMLFMGF  111 (451)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6777666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=94.30  E-value=0.042  Score=50.34  Aligned_cols=60  Identities=12%  Similarity=0.093  Sum_probs=41.8

Q ss_pred             cchhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          236 NNLAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       236 ~n~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      .-...+.++++.+.  .....++..+.+.++.+..|.++||++||    |.+..+..+.+++.+++
T Consensus        21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r----~~~~~~~~~~~~~~~~~   82 (375)
T 2gfp_A           21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRR----PVILVGMSIFMLATLVA   82 (375)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCC----CCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc----hhHHHHHHHHHHHHHHH
Confidence            33455666777654  35688899999999999999999999998    33444444444444433

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=94.13  E-value=0.065  Score=49.92  Aligned_cols=58  Identities=16%  Similarity=0.147  Sum_probs=44.8

Q ss_pred             hhHHHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHH
Q 021109          238 LAQIGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       238 ~~~i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~  299 (317)
                      ...+.++++.++  .....++..+...++.+.+|.++||++||    |.+.++.++.+++.+++
T Consensus        49 ~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r----~~l~~~~~~~~~~~~~~  108 (438)
T 3o7q_A           49 LPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYK----AGIITGLFLYALGAALF  108 (438)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHH----HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcch----HHHHHHHHHHHHHHHHH
Confidence            344667777764  35688999999999999999999999998    66666666666666655

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=93.69  E-value=0.041  Score=52.99  Aligned_cols=85  Identities=9%  Similarity=-0.071  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhhhhhheeecchhHH-HHHhC------CCc--hhhHHHHHhhhhcccccccccchhhh-hccCCCcch
Q 021109          215 ADFWLLWFVYFLGVGAGVTVLNNLAQI-GVALG------VND--TTELLCLFSLCNFAGRLGSGVLSEHY-VSSQWYPLC  284 (317)
Q Consensus       215 ~~Fw~l~~~~~~~~g~Gl~~i~n~~~i-~~a~~------~~~--~~~~vsl~si~n~~GRl~~G~lsD~~-~~~~~~~R~  284 (317)
                      +.+|.+++..++...+-.++...+... .+.++      .+.  .....++..+...++.+.+|.++||+ +||    |.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r----~~   87 (524)
T 2xut_A           12 RQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKY----NT   87 (524)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSH----HH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----HH
Confidence            456766665555444433333444443 34566      543  45788899999999999999999999 987    55


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 021109          285 CDCTAWSLLWRHILFDGSN  303 (317)
Q Consensus       285 ~~~~~~~~~~~~l~~~~~~  303 (317)
                      +.++.++.+++.+++....
T Consensus        88 ~~~~~~~~~~~~~~~~~~~  106 (524)
T 2xut_A           88 ILWLSLIYCVGHAFLAIFE  106 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHhc
Confidence            5666666666666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=93.03  E-value=0.13  Score=48.46  Aligned_cols=87  Identities=11%  Similarity=-0.033  Sum_probs=50.5

Q ss_pred             HHhhhhhhHHHHHHHHHHHhhhhhhee-ecchhHHHHHh-CCC---c--hhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109          208 LGEAFVKADFWLLWFVYFLGVGAGVTV-LNNLAQIGVAL-GVN---D--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQW  280 (317)
Q Consensus       208 ~~~~l~t~~Fw~l~~~~~~~~g~Gl~~-i~n~~~i~~a~-~~~---~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  280 (317)
                      .++.++++++|.+++..++.. .+... ........++. +..   .  .....++..+++.+|++..|.++||++||  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~--  289 (417)
T 2cfq_A          213 ALELFRQPKLWFLSLYVIGVS-CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK--  289 (417)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH--
T ss_pred             HHHHhcCCchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH--
Confidence            457788999998776544332 22211 12233333332 211   1  13456677788999999999999999986  


Q ss_pred             CcchHHHHHHHHHHHHHHH
Q 021109          281 YPLCCDCTAWSLLWRHILF  299 (317)
Q Consensus       281 ~~R~~~~~~~~~~~~~l~~  299 (317)
                        |....+.++++++.+.+
T Consensus       290 --~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          290 --NALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             --HHHHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHH
Confidence              44444444444544433

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=88.59  E-value=0.4  Score=45.30  Aligned_cols=45  Identities=9%  Similarity=-0.089  Sum_probs=35.4

Q ss_pred             hHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHHHHHHHHHH
Q 021109          252 ELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSLLWRHILFD  300 (317)
Q Consensus       252 ~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~~~~~l~~~  300 (317)
                      ..+|...++..+|-+++|.++||+|||    +.+.++.+++.++.++.+
T Consensus        59 ~~~s~~~~G~~iG~~~~G~laDr~GRk----~~l~~~~~l~~i~~i~~a  103 (491)
T 4gc0_A           59 FCVASALIGCIIGGALGGYCSNRFGRR----DSLKIAAVLFFISGVGSA  103 (491)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHH
Confidence            467777888999999999999999998    666666666666655444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=85.61  E-value=0.14  Score=46.77  Aligned_cols=71  Identities=15%  Similarity=0.146  Sum_probs=49.9

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhc
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVS  277 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~  277 (317)
                      +.++.+|++.+|.+.+..++.......+......+.++ ++.+  +.....++.+++..+|++..|.++||.++
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~  264 (375)
T 2gfp_A          191 SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFST  264 (375)
T ss_dssp             CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999888777655544444444444443 4443  23456777888889999999999998876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.23
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.03
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.19

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00019  Score=62.91  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=55.2

Q ss_pred             hhhhhhHHHHHHHHHHHhh-hhhheeecchhH-HHHHhCCCc--hhhHHHHHhhhhcccccccccchhhhhccCCCcchH
Q 021109          210 EAFVKADFWLLWFVYFLGV-GAGVTVLNNLAQ-IGVALGVND--TTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCC  285 (317)
Q Consensus       210 ~~l~t~~Fw~l~~~~~~~~-g~Gl~~i~n~~~-i~~a~~~~~--~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~  285 (317)
                      ..+|+++||.+.+.+++.. +.|. +..-... +.+.+|.+.  ..+..++..+...++.+.+|.++||++||    |.+
T Consensus         2 ~~lkn~~~~~l~~~~f~~~~~~~~-~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr----~~l   76 (417)
T d1pv7a_           2 YYLKNTNFWMFGLFFFFYFFIMGA-YFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLR----KYL   76 (417)
T ss_dssp             HHHHSHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTC----THH
T ss_pred             CcccCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch----HHH
Confidence            4689999999988665543 3332 2233333 334567664  35788999999999999999999999998    555


Q ss_pred             HHHHHHHHHH
Q 021109          286 DCTAWSLLWR  295 (317)
Q Consensus       286 ~~~~~~~~~~  295 (317)
                      .++.....++
T Consensus        77 ~~~~~~~~~~   86 (417)
T d1pv7a_          77 LWIITGMLVM   86 (417)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHH
Confidence            4433333333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00027  Score=63.73  Aligned_cols=74  Identities=9%  Similarity=0.071  Sum_probs=53.1

Q ss_pred             CHHhhhhhhHHHHHHHHHHHhhhhhheeecchhHHHHH-hCCC--chhhHHHHHhhhhcccccccccchhhhhccCC
Q 021109          207 KLGEAFVKADFWLLWFVYFLGVGAGVTVLNNLAQIGVA-LGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQW  280 (317)
Q Consensus       207 t~~~~l~t~~Fw~l~~~~~~~~g~Gl~~i~n~~~i~~a-~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~  280 (317)
                      ..++.++++.+|.+.+..++.......+........++ .+.+  ......++..+.+.+|+++.|.++||++|+..
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  317 (447)
T d1pw4a_         241 FMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNR  317 (447)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCH
T ss_pred             HHHHHHcCchHHHHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccc
Confidence            44678889999999888777666554444444443333 2333  23568889999999999999999999987643

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0024  Score=57.22  Aligned_cols=79  Identities=18%  Similarity=0.151  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhhhhhheeecchh---HHHHHhCCC--chhhHHHHHhhhhcccccccccchhhhhccCCCcchHHHHHHHH
Q 021109          218 WLLWFVYFLGVGAGVTVLNNLA---QIGVALGVN--DTTELLCLFSLCNFAGRLGSGVLSEHYVSSQWYPLCCDCTAWSL  292 (317)
Q Consensus       218 w~l~~~~~~~~g~Gl~~i~n~~---~i~~a~~~~--~~~~~vsl~si~n~~GRl~~G~lsD~~~~~~~~~R~~~~~~~~~  292 (317)
                      |.+++..+++.....+.-.+.+   +..+++|.+  +.....++.++...+|.+.+|.++||++||    |.+.++.++.
T Consensus        24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r----~~~~~~~~~~   99 (447)
T d1pw4a_          24 WQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPR----VFLPAGLILA   99 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHTTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch----HHHHHHHHHH
Confidence            5555555444443332222333   333445554  346789999999999999999999999998    5555555555


Q ss_pred             HHHHHHHH
Q 021109          293 LWRHILFD  300 (317)
Q Consensus       293 ~~~~l~~~  300 (317)
                      +++.++.+
T Consensus       100 ~~~~~~~~  107 (447)
T d1pw4a_         100 AAVMLFMG  107 (447)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhhcc
Confidence            55555443