Citrus Sinensis ID: 021114
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | 2.2.26 [Sep-21-2011] | |||||||
| Q05758 | 591 | Ketol-acid reductoisomera | yes | no | 0.804 | 0.431 | 0.866 | 1e-128 | |
| Q01292 | 595 | Ketol-acid reductoisomera | N/A | no | 0.899 | 0.478 | 0.757 | 1e-128 | |
| O82043 | 581 | Ketol-acid reductoisomera | N/A | no | 0.911 | 0.497 | 0.789 | 1e-127 | |
| Q65XK0 | 578 | Ketol-acid reductoisomera | yes | no | 0.744 | 0.408 | 0.898 | 1e-123 | |
| P78827 | 404 | Probable ketol-acid reduc | yes | no | 0.602 | 0.472 | 0.392 | 2e-28 | |
| P38674 | 402 | Ketol-acid reductoisomera | N/A | no | 0.649 | 0.512 | 0.381 | 3e-28 | |
| B3QSP0 | 338 | Ketol-acid reductoisomera | yes | no | 0.552 | 0.517 | 0.365 | 3e-24 | |
| A9BGP6 | 330 | Ketol-acid reductoisomera | yes | no | 0.539 | 0.518 | 0.366 | 1e-23 | |
| C1DA41 | 338 | Ketol-acid reductoisomera | yes | no | 0.552 | 0.517 | 0.355 | 1e-22 | |
| Q8DW43 | 340 | Ketol-acid reductoisomera | yes | no | 0.542 | 0.505 | 0.368 | 2e-22 |
| >sp|Q05758|ILV5_ARATH Ketol-acid reductoisomerase, chloroplastic OS=Arabidopsis thaliana GN=At3g58610 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 221/255 (86%), Positives = 237/255 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYKSDIFGERG 307
TLEQEY+SDIFGERG
Sbjct: 301 TLEQEYRSDIFGERG 315
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 6 |
| >sp|Q01292|ILV5_SPIOL Ketol-acid reductoisomerase, chloroplastic OS=Spinacia oleracea GN=AHRI PE=1 SV=1 | Back alignment and function description |
|---|
Score = 458 bits (1178), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/305 (75%), Positives = 256/305 (83%), Gaps = 20/305 (6%)
Query: 14 KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
K SP PS+ LNL F SST K+ R+LK R G GSAL AQM S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERG 307
FGERG
Sbjct: 317 FGERG 321
|
Spinacia oleracea (taxid: 3562) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|O82043|ILV5_PEA Ketol-acid reductoisomerase, chloroplastic OS=Pisum sativum GN=PGAAIR PE=2 SV=1 | Back alignment and function description |
|---|
Score = 456 bits (1172), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/294 (78%), Positives = 249/294 (84%), Gaps = 5/294 (1%)
Query: 18 SPSSETLK----GAFKHLNLAFFSSTAKSLRALKTTRGRGSALGAQMASETALKTPFLLD 73
S SS+TL +F NL+F + +S+RA ++ GSALGA S P LD
Sbjct: 13 SASSKTLAKPVAASFAPTNLSFSKLSPQSIRARRSIT-VGSALGATKVSAPPATHPVSLD 71
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ ++LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 72 FETSVFKKERVNLAGHEEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 131
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKSDIVVKVGLRKGS SF EAR AGF+EE GTLGDI+ETISGSDLVLLLISD+AQAD
Sbjct: 132 LVEAKSDIVVKVGLRKGSSSFNEAREAGFSEEKGTLGDIWETISGSDLVLLLISDSAQAD 191
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS +KPNSILGLSHGFLLGHLQSIGLDFPKN VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 192 NYEKIFSHLKPNSILGLSHGFLLGHLQSIGLDFPKNFSVIAVCPKGMGPSVRRLYVQGKE 251
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
INGAGINSSF VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 252 INGAGINSSFGVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 305
|
Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q65XK0|ILV5_ORYSJ Ketol-acid reductoisomerase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0573700 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/236 (89%), Positives = 225/236 (95%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 68 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 127
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 128 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 187
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 188 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 247
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 248 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 303
|
Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P78827|ILV5_SCHPO Probable ketol-acid reductoisomerase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ilv5 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 80/204 (39%), Positives = 114/204 (55%), Gaps = 13/204 (6%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG 223
TL + E I +++ L+SDAAQ + + KI + L SHGF +
Sbjct: 131 P-GKTLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYKSDIFGERG 307
+GS F + TT ++E SD+ GERG
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERG 268
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|P38674|ILV5_NEUCR Ketol-acid reductoisomerase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ilv-2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 125 bits (315), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 123/220 (55%), Gaps = 14/220 (6%)
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+++E R KLL D F + + +IG+GSQG Q NLRD+ + V VG+
Sbjct: 62 HKEEVHERADWPAEKLL-DYFKN-DTLALIGYGSQGHGQGLNLRDN------GLNVIVGV 113
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RK +S+ +A G+ L D+ E IS +V+ L+SDAAQ++ + I +
Sbjct: 114 RKNGKSWEDAIQDGWVP-GKNLFDVDEAISRGTIVMNLLSDAAQSETWPHIKPQITKGKT 172
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
L SHGF ++ P ++ VI V PKG G +VR L+ +G+ GINSSFAV+Q
Sbjct: 173 LYFSHGFSPVFKDLTKVEVPTDVDVILVAPKGSGRTVRSLFREGR-----GINSSFAVYQ 227
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
DV G+A A+ VA+GS + + TT E+E SD++GERG
Sbjct: 228 DVTGKAKEKAVALGVAVGSGYLYETTFEKEVYSDLYGERG 267
|
Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|B3QSP0|ILVC_CHLT3 Ketol-acid reductoisomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 72/197 (36%), Positives = 106/197 (53%), Gaps = 22/197 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I V+G+GSQG A A NL+DS + V VGL++ S S+ +A AG E
Sbjct: 18 KIAVLGFGSQGHAHALNLKDS------GMNVCVGLKENSASWVKAEKAGLMVEKTA---- 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D++++LI D Q YE I +KP L HGF + + Q + P N+
Sbjct: 68 -EAVKWADIIMVLIPDQVQKAVYENDIAPNLKPGDTLAFGHGFNIHYKQIVP---PANVN 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFT 289
VI + PK G VRR +V+G AG+ AVHQ+VDG+A ++AL W+ LG
Sbjct: 124 VIMIAPKSPGHLVRRTFVEG-----AGVPCLIAVHQNVDGKAKDIALAWAKGLGGTKAGV 178
Query: 290 FATTLEQEYKSDIFGER 306
T + E ++D+FGE+
Sbjct: 179 IETNFKDETETDLFGEQ 195
|
Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|A9BGP6|ILVC_PETMO Ketol-acid reductoisomerase OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 28/199 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I V+G+GSQG AQAQNL+DS + V +GL+K S+S A+ GF ++Y
Sbjct: 20 IAVLGYGSQGHAQAQNLKDS------GLKVIIGLKKDSKSKETAQRDGF--------EVY 65
Query: 174 ET---ISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN 229
ET + D++ +LI D Q++ Y+K I + + LG SHGF + Q + PKN
Sbjct: 66 ETSEAVKKGDIIQVLIPDEVQSEVYKKDIEPNLDEGNALGFSHGFNIHFGQIVP---PKN 122
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF- 288
+ V V PK G VRR+Y++GK G+ AVHQD G+A + L ++ +G
Sbjct: 123 VDVFMVAPKSPGHLVRRMYLEGK-----GVPGLLAVHQDFSGKAKELGLSYAKGIGCTRA 177
Query: 289 -TFATTLEQEYKSDIFGER 306
TT ++E ++D+FGE+
Sbjct: 178 GVIKTTFKEETETDLFGEQ 196
|
Petrotoga mobilis (strain DSM 10674 / SJ95) (taxid: 403833) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|C1DA41|ILVC_LARHH Ketol-acid reductoisomerase OS=Laribacter hongkongensis (strain HLHK9) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 111/197 (56%), Gaps = 22/197 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A AQNL++S + V VGLRK S+ +A AAG T + ++
Sbjct: 18 KVAIIGYGSQGHAHAQNLKES------GVDVIVGLRKDGASWKKAEAAGHT-----VKEV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D+V++L+ D Q D Y I +K + L +HGF + + Q + P +I
Sbjct: 67 GEAVKTADVVMILLPDETQPDVYRNDIAPNLKKGAALAFAHGFNIHYNQIVP---PADID 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF--T 289
VI + PKG G +VR +++G G+ S AV+QD GRA +VAL ++ A G
Sbjct: 124 VIMIAPKGPGHTVRSEFLKG-----GGVPSLIAVYQDHSGRARDVALSYAAANGGTKGGV 178
Query: 290 FATTLEQEYKSDIFGER 306
T+ +E ++D+FGE+
Sbjct: 179 IETSFREETETDLFGEQ 195
|
Laribacter hongkongensis (strain HLHK9) (taxid: 557598) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
| >sp|Q8DW43|ILVC_STRMU Ketol-acid reductoisomerase OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=ilvC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 29/201 (14%)
Query: 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLG 170
+I VIG+GSQG A AQNLRDS D++ +G+R G +SF +A+ GF T E G
Sbjct: 19 KKIAVIGYGSQGHAHAQNLRDS----GHDVI--IGVRHG-KSFDKAKEDGFDTYEVG--- 68
Query: 171 DIYETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFP 227
E +D++++L D Q D Y ++I + LG +HGF + G++++ P
Sbjct: 69 ---EATKLADIIMVLAPDEIQKDIYKDEIAPNLSAGKALGFAHGFNIHFGYIKA-----P 120
Query: 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287
+++ V V PKG G VRR Y + G G+ S +AV+Q+ G A N+AL W+ +GS
Sbjct: 121 EDVDVFMVAPKGPGHLVRRTYTE-----GFGVPSLYAVYQNPTGNAENIALDWAKGIGSA 175
Query: 288 FT--FATTLEQEYKSDIFGER 306
TT ++E + D+FGE+
Sbjct: 176 RVGLLVTTFKEETEEDLFGEQ 196
|
Streptococcus mutans (taxid: 1309) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 8 EC: 6 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| 225446579 | 588 | PREDICTED: ketol-acid reductoisomerase, | 0.905 | 0.488 | 0.823 | 1e-131 | |
| 295291644 | 587 | ketol-acid reductoisomerase [Catharanthu | 0.870 | 0.470 | 0.833 | 1e-130 | |
| 255568281 | 584 | ketol-acid reductoisomerase, chloroplast | 0.845 | 0.458 | 0.858 | 1e-129 | |
| 224079219 | 589 | predicted protein [Populus trichocarpa] | 0.870 | 0.468 | 0.825 | 1e-128 | |
| 341958461 | 587 | chloroplast acetohydroxy acid isomerored | 0.883 | 0.477 | 0.820 | 1e-127 | |
| 356549858 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.883 | 0.477 | 0.820 | 1e-127 | |
| 356543900 | 586 | PREDICTED: ketol-acid reductoisomerase, | 0.883 | 0.477 | 0.816 | 1e-127 | |
| 297817174 | 594 | ketol-acid reductoisomerase [Arabidopsis | 0.804 | 0.429 | 0.870 | 1e-126 | |
| 15231092 | 591 | ketol-acid reductoisomerase [Arabidopsis | 0.804 | 0.431 | 0.866 | 1e-126 | |
| 266346 | 595 | RecName: Full=Ketol-acid reductoisomeras | 0.899 | 0.478 | 0.757 | 1e-126 |
| >gi|225446579|ref|XP_002280094.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic [Vitis vinifera] gi|147767264|emb|CAN69003.1| hypothetical protein VITISV_005408 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1216), Expect = e-131, Method: Compositional matrix adjust.
Identities = 242/294 (82%), Positives = 260/294 (88%), Gaps = 7/294 (2%)
Query: 21 SETLKGAFKHL--NLAFFSSTA-KSLRA--LKTTR--GRGSALGAQMASETALKTPFLLD 73
++TLK +L NL F SS A +SLRA L T+ G GSAL A+M S +K P LLD
Sbjct: 19 TKTLKSDSTNLSPNLGFLSSKAFQSLRARVLPTSSVGGTGSALAARMVSTPLIKPPALLD 78
Query: 74 FETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133
FETSVFKK+ +SLA DE+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDS
Sbjct: 79 FETSVFKKEKVSLAGHDEYIVRGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDS 138
Query: 134 LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193
L EAKS+IVVK+GLRKGS+SFAEARAAGFTEENGTLGDIYETISGSDLV+LLISD+AQAD
Sbjct: 139 LVEAKSNIVVKIGLRKGSKSFAEARAAGFTEENGTLGDIYETISGSDLVMLLISDSAQAD 198
Query: 194 NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
NYEKIFS MKPNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE
Sbjct: 199 NYEKIFSHMKPNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKE 258
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
+NGAGINSSFAV QDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 259 VNGAGINSSFAVQQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 312
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|295291644|gb|ADF87507.1| ketol-acid reductoisomerase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 235/282 (83%), Positives = 251/282 (89%), Gaps = 6/282 (2%)
Query: 32 NLAFFSSTAKSL-----RALKTTRGRGSALGAQMASE-TALKTPFLLDFETSVFKKDAIS 85
NL+F SS+ SL RA T GSA+ A+M S A+K P LDFETSVFKK+ I+
Sbjct: 31 NLSFLSSSTPSLKHLAARAASFTTSCGSAVAARMVSTPAAVKPPTNLDFETSVFKKEKIN 90
Query: 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145
LA +E+IVRGGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAE KSDI+VK+
Sbjct: 91 LAGHEEYIVRGGRDLFNLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAETKSDILVKI 150
Query: 146 GLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPN 205
GLRKGSRSFAEARAAGF+EENGTLGDIYETISGSDLVLLLISDAAQADNYE++FS MKPN
Sbjct: 151 GLRKGSRSFAEARAAGFSEENGTLGDIYETISGSDLVLLLISDAAQADNYEQVFSHMKPN 210
Query: 206 SILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
SILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV
Sbjct: 211 SILGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 270
Query: 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
HQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 271 HQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 312
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568281|ref|XP_002525115.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] gi|223535574|gb|EEF37242.1| ketol-acid reductoisomerase, chloroplast precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/269 (85%), Positives = 247/269 (91%), Gaps = 1/269 (0%)
Query: 40 AKSLRALKTTRGRGSALGA-QMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGR 98
+KS ++L+ G GSA+GA M S A+K LDFET+VFKK+ ISLA DE+IVRGGR
Sbjct: 40 SKSFKSLRANGGGGSAVGACSMVSMPAVKPLISLDFETTVFKKEKISLAGHDEYIVRGGR 99
Query: 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158
DLFKLLPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSFAEAR
Sbjct: 100 DLFKLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLGEAKSDIVVKIGLRKGSRSFAEAR 159
Query: 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGH 218
+AGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSILGLSHGFLLGH
Sbjct: 160 SAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSILGLSHGFLLGH 219
Query: 219 LQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVAL 278
LQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VAL
Sbjct: 220 LQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVAL 279
Query: 279 GWSVALGSPFTFATTLEQEYKSDIFGERG 307
GWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 280 GWSVALGSPFTFATTLEQEYKSDIFGERG 308
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079219|ref|XP_002305797.1| predicted protein [Populus trichocarpa] gi|222848761|gb|EEE86308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 231/280 (82%), Positives = 250/280 (89%), Gaps = 4/280 (1%)
Query: 32 NLAFFSS-TAKSLRALKTTRGR--GSALGAQMASETALKTPFL-LDFETSVFKKDAISLA 87
NL F SS ++K+ + LK + G G LGA+M S P + LDFETSVFKK+ +SLA
Sbjct: 34 NLGFSSSVSSKTFKPLKASNGNVTGGVLGAKMVSSVPSVKPLISLDFETSVFKKEKVSLA 93
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
DE+IVRGGRDLF LLPDAF GI QIGV+GWGSQGPAQAQNLRDSLAEAKSDI VK+GL
Sbjct: 94 GHDEYIVRGGRDLFHLLPDAFKGIKQIGVLGWGSQGPAQAQNLRDSLAEAKSDIKVKIGL 153
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSFAEARAAGFTEENGTLGDI+ET+SGSDLVLLLISDAAQADNYEK+FS MKPNSI
Sbjct: 154 RKGSRSFAEARAAGFTEENGTLGDIWETVSGSDLVLLLISDAAQADNYEKVFSHMKPNSI 213
Query: 208 LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
LGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGINSSFAVHQ
Sbjct: 214 LGLSHGFLLGHLQSMGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQ 273
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
DVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 274 DVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 313
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|341958461|gb|AEL13846.1| chloroplast acetohydroxy acid isomeroreductase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/284 (82%), Positives = 253/284 (89%), Gaps = 4/284 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356549858|ref|XP_003543307.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 460 bits (1183), Expect = e-127, Method: Compositional matrix adjust.
Identities = 233/284 (82%), Positives = 253/284 (89%), Gaps = 4/284 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SLR + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLRLRRCAAASGSALGARMVSVPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356543900|ref|XP_003540396.1| PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/284 (81%), Positives = 253/284 (89%), Gaps = 4/284 (1%)
Query: 28 FKHLNLAFFSSTAK----SLRALKTTRGRGSALGAQMASETALKTPFLLDFETSVFKKDA 83
F NLA SS++K SL+ + GSALGA+M S A+K P LLDF+T VFKK+
Sbjct: 28 FSATNLALQSSSSKLGFKSLKLHRCAAAAGSALGARMVSAPAVKAPALLDFDTKVFKKEK 87
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
I+LA DE+IV+GGRDLF LLPDAF GI QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV
Sbjct: 88 INLAGHDEYIVKGGRDLFHLLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 147
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
K+GLRKGSRSFAEARAAGF+EENGTLGDI+ET+SGSDLV+LLISD+AQADNYEKI S MK
Sbjct: 148 KIGLRKGSRSFAEARAAGFSEENGTLGDIWETVSGSDLVMLLISDSAQADNYEKILSHMK 207
Query: 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
PNSILGLSHGFLLGHLQS+GLDFPKNI VIAVCPKGMGPSVRRLYVQGKEINGAGIN+SF
Sbjct: 208 PNSILGLSHGFLLGHLQSLGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINASF 267
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
AVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 268 AVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYRSDIFGERG 311
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817174|ref|XP_002876470.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] gi|297322308|gb|EFH52729.1| ketol-acid reductoisomerase [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/255 (87%), Positives = 236/255 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 64 GSSLSARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 123
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE GTLGDI
Sbjct: 124 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEETGTLGDI 183
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETISGSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 184 WETISGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 243
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 244 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 303
Query: 293 TLEQEYKSDIFGERG 307
TLEQEY+SDIFGERG
Sbjct: 304 TLEQEYRSDIFGERG 318
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15231092|ref|NP_191420.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|145332887|ref|NP_001078309.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|334186086|ref|NP_001190127.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|12644387|sp|Q05758.2|ILV5_ARATH RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|11692838|gb|AAG40022.1|AF324671_1 AT3g58610 [Arabidopsis thaliana] gi|11993867|gb|AAG42917.1|AF329500_1 putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|402552|emb|CAA49506.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|6735378|emb|CAB68199.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|17063195|gb|AAL32973.1| AT3g58610/F14P22_200 [Arabidopsis thaliana] gi|17529224|gb|AAL38839.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|20465493|gb|AAM20206.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23397061|gb|AAN31816.1| putative ketol-acid reductoisomerase [Arabidopsis thaliana] gi|23463055|gb|AAN33197.1| At3g58610/F14P22_200 [Arabidopsis thaliana] gi|332646283|gb|AEE79804.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646284|gb|AEE79805.1| ketol-acid reductoisomerase [Arabidopsis thaliana] gi|332646285|gb|AEE79806.1| ketol-acid reductoisomerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/255 (86%), Positives = 237/255 (92%)
Query: 53 GSALGAQMASETALKTPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGIN 112
GS+L A+M S +A+K P LDFETSVFKK+ +SLA +E+IVRGGRDLFK LPDAF GI
Sbjct: 61 GSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLAGYEEYIVRGGRDLFKHLPDAFKGIK 120
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GLRKGSRSF EARAAGFTEE+GTLGDI
Sbjct: 121 QIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGLRKGSRSFEEARAAGFTEESGTLGDI 180
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI V
Sbjct: 181 WETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSSGLDFPKNISV 240
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFAT 292
+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQDVDGRA +VALGWSVALGSPFTFAT
Sbjct: 241 VAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQDVDGRAADVALGWSVALGSPFTFAT 300
Query: 293 TLEQEYKSDIFGERG 307
TLEQEY+SDIFGERG
Sbjct: 301 TLEQEYRSDIFGERG 315
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|266346|sp|Q01292.1|ILV5_SPIOL RecName: Full=Ketol-acid reductoisomerase, chloroplastic; AltName: Full=Acetohydroxy-acid reductoisomerase; AltName: Full=Alpha-keto-beta-hydroxylacil reductoisomerase; Flags: Precursor gi|21234|emb|CAA40356.1| acetohydroxy acid reductoisomerase [Spinacia oleracea] | Back alignment and taxonomy information |
|---|
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/305 (75%), Positives = 256/305 (83%), Gaps = 20/305 (6%)
Query: 14 KFSPSPSSETLKGAFKHLNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASET 64
K SP PS+ LNL F SST K+ R+LK R G GSAL AQM S
Sbjct: 26 KQSPKPSA---------LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAP 76
Query: 65 ALKTP--FLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQ 122
++ TP DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ
Sbjct: 77 SINTPSATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQ 136
Query: 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182
PAQAQNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLV
Sbjct: 137 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLV 196
Query: 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242
LLLISD+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGP
Sbjct: 197 LLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGP 256
Query: 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDI 302
SVRRLYVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDI
Sbjct: 257 SVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDI 316
Query: 303 FGERG 307
FGERG
Sbjct: 317 FGERG 321
|
Source: Spinacia oleracea Species: Spinacia oleracea Genus: Spinacia Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 317 | ||||||
| TAIR|locus:2076371 | 591 | AT3G58610 [Arabidopsis thalian | 0.870 | 0.467 | 0.785 | 1.1e-110 | |
| UNIPROTKB|Q01292 | 595 | AHRI "Ketol-acid reductoisomer | 0.873 | 0.465 | 0.743 | 4.4e-107 | |
| UNIPROTKB|Q65XK0 | 578 | LOC_Os05g49800 "Ketol-acid red | 0.807 | 0.442 | 0.797 | 6e-103 | |
| POMBASE|SPBC56F2.12 | 404 | ilv5 "acetohydroxyacid reducto | 0.602 | 0.472 | 0.367 | 1.4e-25 | |
| ASPGD|ASPL0000041782 | 400 | AN2526 [Emericella nidulans (t | 0.665 | 0.527 | 0.334 | 3.3e-24 | |
| CGD|CAL0000685 | 400 | ILV5 [Candida albicans (taxid: | 0.681 | 0.54 | 0.346 | 1.4e-23 | |
| UNIPROTKB|G4MW52 | 400 | MGG_15774 "Ketol-acid reductoi | 0.574 | 0.455 | 0.345 | 1.8e-23 | |
| SGD|S000004347 | 395 | ILV5 "Acetohydroxyacid reducto | 0.605 | 0.486 | 0.349 | 3.4e-22 | |
| TIGR_CMR|CHY_0519 | 330 | CHY_0519 "ketol-acid reductois | 0.558 | 0.536 | 0.328 | 7.8e-15 | |
| UNIPROTKB|P65149 | 333 | ilvC "Ketol-acid reductoisomer | 0.555 | 0.528 | 0.306 | 1.7e-10 |
| TAIR|locus:2076371 AT3G58610 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
Identities = 220/280 (78%), Positives = 240/280 (85%)
Query: 32 NLAFFSSTAKSLRALKTT-RGRG---SALGAQMASETALKTPFLLDFETSVFKKDAISLA 87
N+ F SS++KSLR+L T G G S+L A+M S +A+K P LDFETSVFKK+ +SLA
Sbjct: 36 NIGFLSSSSKSLRSLTATVAGNGATGSSLAARMVSSSAVKAPVSLDFETSVFKKEKVSLA 95
Query: 88 NRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147
+E+IVRGGRDLFK LPDAF GI QIGVIGWGSQGPAQAQNLRDSL EAKSDIVVK+GL
Sbjct: 96 GYEEYIVRGGRDLFKHLPDAFKGIKQIGVIGWGSQGPAQAQNLRDSLVEAKSDIVVKIGL 155
Query: 148 RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI 207
RKGSRSF EARAAGFTEE+GTLGDI+ETI+GSDLVLLLISDAAQADNYEKIFS MKPNSI
Sbjct: 156 RKGSRSFEEARAAGFTEESGTLGDIWETIAGSDLVLLLISDAAQADNYEKIFSHMKPNSI 215
Query: 208 XXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267
QS GLDFPKNI V+AVCPKGMGPSVRRLYVQGKEINGAGIN+SFAVHQ
Sbjct: 216 LGLSHGFLLGHLQSSGLDFPKNISVVAVCPKGMGPSVRRLYVQGKEINGAGINASFAVHQ 275
Query: 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
DVDGRA +VALGWSVALGSPFTFATTLEQEY+SDIFGERG
Sbjct: 276 DVDGRAADVALGWSVALGSPFTFATTLEQEYRSDIFGERG 315
|
|
| UNIPROTKB|Q01292 AHRI "Ketol-acid reductoisomerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1059 (377.8 bits), Expect = 4.4e-107, P = 4.4e-107
Identities = 214/288 (74%), Positives = 238/288 (82%)
Query: 31 LNLAFF--SSTAKSLRALKTTR-------GRGSALGAQMASETALKTPFL--LDFETSVF 79
LNL F SST K+ R+LK R G GSAL AQM S ++ TP DF++SVF
Sbjct: 34 LNLGFLGSSSTIKACRSLKAARVLPSGANGGGSALSAQMVSAPSINTPSATTFDFDSSVF 93
Query: 80 KKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139
KK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQAQNL+DSL EAKS
Sbjct: 94 KKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKS 153
Query: 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
D+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLISD+AQADNYEK+F
Sbjct: 154 DVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVF 213
Query: 200 SCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259
S MKPNSI QS+G DFPKNI VIAVCPKGMGPSVRRLYVQGKE+NGAGI
Sbjct: 214 SHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRLYVQGKEVNGAGI 273
Query: 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
NSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 274 NSSFAVHQDVDGRATDVALGWSIALGSPFTFATTLEQEYKSDIFGERG 321
|
|
| UNIPROTKB|Q65XK0 LOC_Os05g49800 "Ketol-acid reductoisomerase, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 205/257 (79%), Positives = 222/257 (86%)
Query: 52 RGSALGAQMASETALKTPF-LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNG 110
R A+ A +A+ A+ LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF G
Sbjct: 47 RRRAVTAMVAAPPAVGAAMPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKG 106
Query: 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170
I QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLG
Sbjct: 107 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLG 166
Query: 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNI 230
DI+ET+SGSDLVLLLISDAAQADNYEKIFS MKPNSI QS GLDFPKNI
Sbjct: 167 DIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNI 226
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTF
Sbjct: 227 SVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTF 286
Query: 291 ATTLEQEYKSDIFGERG 307
ATTLEQEYKSDIFGERG
Sbjct: 287 ATTLEQEYKSDIFGERG 303
|
|
| POMBASE|SPBC56F2.12 ilv5 "acetohydroxyacid reductoisomerase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 75/204 (36%), Positives = 108/204 (52%)
Query: 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163
L D F + + +IG+GSQG Q N RD + V VG+RK S+ +A G+
Sbjct: 78 LVDYFKN-DTLAIIGYGSQGHGQGLNARDQ------GLNVIVGVRKDGASWKQAIEDGWV 130
Query: 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIG 223
TL + E I +++ L+SDAAQ + + KI +
Sbjct: 131 PGK-TLFPVEEAIKKGSIIMNLLSDAAQTETWPKIAPLITKGKTLYFSHGFSVIFKDQTK 189
Query: 224 LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
+ PK++ VI V PKG G +VR L+ +G+ GINSSFAV+QDV G+A A+G +VA
Sbjct: 190 IHPPKDVDVILVAPKGSGRTVRTLFKEGR-----GINSSFAVYQDVTGKAQEKAIGLAVA 244
Query: 284 LGSPFTFATTLEQEYKSDIFGERG 307
+GS F + TT ++E SD+ GERG
Sbjct: 245 VGSGFIYQTTFKKEVISDLVGERG 268
|
|
| ASPGD|ASPL0000041782 AN2526 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 75/224 (33%), Positives = 113/224 (50%)
Query: 84 ISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV 143
IS A+ E + + L + F + + +IG+GSQG Q NLRD + V
Sbjct: 55 ISFADSQETVYERADWPREKLQEYFKN-DTLALIGYGSQGHGQGLNLRDQ------GLNV 107
Query: 144 KVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203
VG+RK S+ EA G+ L ++ E + +V+ L+SDAAQ++ + + +
Sbjct: 108 IVGVRKDGASWKEAIQDGWVPGKN-LFEVTEAVQKGTIVMNLLSDAAQSETWPTLKPLIT 166
Query: 204 PNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263
+ +D P ++ VI V PKG G +VR L+ +G+ GINSS
Sbjct: 167 KGKTLYFSHGFSPVFKEKTKVDVPSDVDVILVAPKGSGRTVRTLFREGR-----GINSSI 221
Query: 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
AV QDV G A A+ VA+GS + + TT E+E SD++GERG
Sbjct: 222 AVFQDVTGNAKEKAIAMGVAVGSGYLYETTFEKEVYSDLYGERG 265
|
|
| CGD|CAL0000685 ILV5 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 81/234 (34%), Positives = 121/234 (51%)
Query: 76 TSVFKKDAISLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSL 134
TS+ I+ +E +V D K L D F + +IG+GSQG Q NLRD+
Sbjct: 49 TSIRGVKTINFGGTEE-VVHERADWPKERLLDYFKN-DTFALIGYGSQGYGQGLNLRDN- 105
Query: 135 AEAKSDIVVKVGLRKGSRSFAEARAAGFTE-ENGTLGDIYETISGSDLVLLLISDAAQAD 193
+ V +G+RKGS S+ A G+ EN L ++ E IS +++ L+SDAAQ++
Sbjct: 106 -----GLNVIIGVRKGS-SWEAAVEDGWVPGEN--LFEVDEAISRGTIIMDLLSDAAQSE 157
Query: 194 NYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253
+ I + ++ P NI VI PKG G +VR L+ +G+
Sbjct: 158 TWFHIKPQLTEGKTLYFSHGFSPVFKDLTHVEPPSNIDVILAAPKGSGRTVRSLFKEGR- 216
Query: 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
GINSS+AV DV G+A A+ ++A+GS + + TT E+E SD++GERG
Sbjct: 217 ----GINSSYAVWNDVTGKAEEKAIAMAIAIGSGYVYKTTFEREVNSDLYGERG 266
|
|
| UNIPROTKB|G4MW52 MGG_15774 "Ketol-acid reductoisomerase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 67/194 (34%), Positives = 105/194 (54%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG Q NLRD+ + V +G+RK +S+ +A G+ L ++
Sbjct: 84 LALIGYGSQGHGQGLNLRDN------GLNVIIGVRKDGKSWKDAVQDGWVPGKN-LFEVD 136
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIGVI 233
E IS +++ L+SDAAQ++ + + + ++ P ++ VI
Sbjct: 137 EAISRGTVIMNLLSDAAQSETWPALKPQITKGKTLYFSHGFSPVFKDLTKVEVPTDVDVI 196
Query: 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
PKG G +VR L+ +G+ GINSSFAV+QDV G A A+ VA+GS + + TT
Sbjct: 197 LCAPKGSGRTVRSLFREGR-----GINSSFAVYQDVTGEAEEKAIALGVAIGSGYLYKTT 251
Query: 294 LEQEYKSDIFGERG 307
E+E SD++GERG
Sbjct: 252 FEKEVYSDLYGERG 265
|
|
| SGD|S000004347 ILV5 "Acetohydroxyacid reductoisomerase and mtDNA binding protein" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 72/206 (34%), Positives = 106/206 (51%)
Query: 102 KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161
KLL D F + +IG+GSQG Q NLRD+ + V +G+RK S+ A G
Sbjct: 70 KLL-DYFKN-DTFALIGYGSQGYGQGLNLRDN------GLNVIIGVRKDGASWKAAIEDG 121
Query: 162 FTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIXXXXXXXXXXXXQS 221
+ L + + I V+ L+SDAAQ++ + I +
Sbjct: 122 WVPGKN-LFTVEDAIKRGSYVMNLLSDAAQSETWPAIKPLLTKGKTLYFSHGFSPVFKDL 180
Query: 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWS 281
++ PK++ VI V PKG G +VR L+ +G+ GINSS+AV DV G+A A +
Sbjct: 181 THVEPPKDLDVILVAPKGSGRTVRSLFKEGR-----GINSSYAVWNDVTGKAHEKAQALA 235
Query: 282 VALGSPFTFATTLEQEYKSDIFGERG 307
VA+GS + + TT E+E SD++GERG
Sbjct: 236 VAIGSGYVYQTTFEREVNSDLYGERG 261
|
|
| TIGR_CMR|CHY_0519 CHY_0519 "ketol-acid reductoisomerase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 202 (76.2 bits), Expect = 7.8e-15, P = 7.8e-15
Identities = 64/195 (32%), Positives = 96/195 (49%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I +IG+GSQG AQAQNL+DS + V VGL K S+S +A A GFT + +
Sbjct: 19 KIAIIGYGSQGHAQAQNLKDS------GLNVVVGLHKKSKSREKAEADGFT-----VMKV 67
Query: 173 YETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSIXXXXXXXXXXXXQSIGLDFPKNIG 231
E +D++ +L+ D Q + Y +KI +KP Q + P ++
Sbjct: 68 DEAAQWADIIQILVPDQIQGELYRDKIEEHLKPGKALMFSHGFNIHYGQIVP---PPDVD 124
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291
V V PK G VRR+Y++GK + G A + D A A G + F
Sbjct: 125 VFLVAPKSPGHLVRRMYLEGKGVPGLIAVYQDATGKAKD-LALAYAKG--IGCTRAGVFE 181
Query: 292 TTLEQEYKSDIFGER 306
TT ++E ++D+FGE+
Sbjct: 182 TTFKEETETDLFGEQ 196
|
|
| UNIPROTKB|P65149 ilvC "Ketol-acid reductoisomerase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 169 (64.5 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 60/196 (30%), Positives = 92/196 (46%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++GVIG+GSQG A + +LRDS + V+VGL++GSRS + G +
Sbjct: 16 KVGVIGYGSQGHAHSLSLRDS------GVQVRVGLKQGSRSRPKVEEQGLDVDTPA---- 65
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSC-MKPNSIXXXXXXXXXXXXQSIGL-DFPKNI 230
E +D+V++L D AQA+ IF+ ++PN GL P ++
Sbjct: 66 -EVAKWADVVMVLAPDTAQAE----IFAGDIEPNLKPGDALFFGHGLNVHFGLIKPPADV 120
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
V V PKG G VRR +V GK G + DG A ++ ++
Sbjct: 121 AVAMVAPKGPGHLVRRQFVDGK---GVPCLVAVEQDPRGDGLALALSYAKAIGGTRAGVI 177
Query: 291 ATTLEQEYKSDIFGER 306
TT + E ++D+FGE+
Sbjct: 178 KTTFKDETETDLFGEQ 193
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q05758 | ILV5_ARATH | 1, ., 1, ., 1, ., 8, 6 | 0.8666 | 0.8044 | 0.4314 | yes | no |
| Q65XK0 | ILV5_ORYSJ | 1, ., 1, ., 1, ., 8, 6 | 0.8983 | 0.7444 | 0.4083 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| COG0059 | 338 | COG0059, IlvC, Ketol-acid reductoisomerase [Amino | 2e-46 | |
| TIGR00465 | 314 | TIGR00465, ilvC, ketol-acid reductoisomerase | 9e-44 | |
| pfam07991 | 165 | pfam07991, IlvN, Acetohydroxy acid isomeroreductas | 6e-42 | |
| PRK05479 | 330 | PRK05479, PRK05479, ketol-acid reductoisomerase; P | 6e-41 | |
| PRK13403 | 335 | PRK13403, PRK13403, ketol-acid reductoisomerase; P | 2e-22 | |
| PRK05225 | 487 | PRK05225, PRK05225, ketol-acid reductoisomerase; V | 1e-17 |
| >gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 2e-46
Identities = 76/203 (37%), Positives = 114/203 (56%), Gaps = 32/203 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI---GLDFPK 228
E +D+V++L+ D Q + YEK I +K + LG +HGF +I + PK
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGF------NIHFGLIVPPK 122
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 123 DVDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG-- 175
Query: 289 TFA----TTLEQEYKSDIFGERG 307
T A TT ++E ++D+FGE+
Sbjct: 176 TRAGVIETTFKEETETDLFGEQA 198
|
Length = 338 |
| >gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 9e-44
Identities = 73/198 (36%), Positives = 108/198 (54%), Gaps = 22/198 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS +++V GLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS----GLNVIV--GLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYKSDIFGERG 307
TT ++E +SD+FGE+
Sbjct: 166 LETTFKEETESDLFGEQA 183
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway [Amino acid biosynthesis, Pyruvate family]. Length = 314 |
| >gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic domain | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 6e-42
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
|
Acetohydroxy acid isomeroreductase catalyzes the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine. Length = 165 |
| >gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (367), Expect = 6e-41
Identities = 74/201 (36%), Positives = 111/201 (55%), Gaps = 32/201 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSI--GL-DFPK 228
E +D++++L+ D QA+ YE+ I +K + L +HGF +I G P
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGF------NIHFGQIVPPA 121
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288
++ VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G
Sbjct: 122 DVDVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG-- 174
Query: 289 TFA----TTLEQEYKSDIFGE 305
T A TT ++E ++D+FGE
Sbjct: 175 TRAGVIETTFKEETETDLFGE 195
|
Length = 330 |
| >gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (236), Expect = 2e-22
Identities = 70/197 (35%), Positives = 107/197 (54%), Gaps = 23/197 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGF-----EVMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYKSDIFGERG 307
TT ++E ++D+FGE+
Sbjct: 179 ETTFQEETETDLFGEQA 195
|
Length = 335 |
| >gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-17
Identities = 67/200 (33%), Positives = 93/200 (46%), Gaps = 26/200 (13%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYKSDIFGE 305
A LE E KSD+ GE
Sbjct: 201 RAGVLESSFVAEVKSDLMGE 220
|
Length = 487 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 100.0 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 100.0 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 100.0 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 100.0 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 99.98 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.87 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.86 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.85 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.82 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.82 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.8 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.8 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.8 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.79 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.78 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.78 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.76 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.75 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.75 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.75 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.73 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.73 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.71 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.68 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.65 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.63 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.63 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.63 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 99.61 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 99.59 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 99.57 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.56 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.56 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 99.55 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 99.55 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.54 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 99.54 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 99.53 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 99.53 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.53 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 99.52 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 99.5 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.49 | |
| KOG3124 | 267 | consensus Pyrroline-5-carboxylate reductase [Amino | 99.49 | |
| PLN02928 | 347 | oxidoreductase family protein | 99.47 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 99.47 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.46 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.45 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 99.45 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.45 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 99.44 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 99.44 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.43 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.43 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 99.42 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.41 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 99.4 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 99.37 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.37 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 99.36 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 99.35 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 99.34 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.34 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 99.34 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.33 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 99.33 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.33 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.32 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.31 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.3 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.3 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 99.26 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.26 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.26 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.25 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 99.24 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.22 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 99.21 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.19 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 99.19 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.17 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.16 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.14 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 99.12 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 99.11 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 99.1 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.1 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.08 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 99.08 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 99.07 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.07 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 99.06 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 99.06 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.01 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 99.01 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.98 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 98.94 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.9 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 98.88 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 98.87 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.82 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.8 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.76 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.75 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 98.75 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.75 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.74 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.71 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.71 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.7 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 98.7 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.7 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 98.67 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.64 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 98.57 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 98.56 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 98.54 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.53 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.51 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 98.49 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 98.48 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 98.46 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.45 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 98.45 | |
| PLN02494 | 477 | adenosylhomocysteinase | 98.43 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 98.36 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 98.34 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 98.33 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.32 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.32 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.3 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.26 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 98.23 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.19 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 98.18 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.17 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.17 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 98.09 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 98.09 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.05 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 98.04 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 98.0 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 97.98 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.93 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.91 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 97.87 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.84 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 97.83 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.83 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.82 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.8 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 97.75 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 97.74 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.72 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.7 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 97.69 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 97.67 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.63 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 97.62 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.61 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.51 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 97.5 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 97.47 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 97.46 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 97.44 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 97.44 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 97.42 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.42 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 97.41 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 97.39 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 97.39 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.39 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 97.35 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 97.34 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 97.34 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.34 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 97.33 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.33 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 97.31 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 97.31 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.3 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.3 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 97.27 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 97.26 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 97.26 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.25 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 97.23 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.22 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 97.21 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 97.19 | |
| KOG2711 | 372 | consensus Glycerol-3-phosphate dehydrogenase/dihyd | 97.18 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.17 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.16 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 97.15 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 97.12 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.12 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.11 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 97.09 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 97.08 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.07 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 97.07 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.04 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.04 | |
| KOG2305 | 313 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 97.01 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.0 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 97.0 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.98 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.98 | |
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 96.98 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.97 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.96 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.96 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.92 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 96.92 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.92 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.85 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.85 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.84 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.84 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 96.82 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 96.81 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 96.81 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 96.8 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.79 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.78 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 96.77 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 96.77 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.77 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.73 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.71 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 96.68 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.67 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.66 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 96.65 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.65 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.64 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.64 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 96.61 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.61 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.6 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.6 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 96.6 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.58 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 96.57 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 96.56 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.55 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.52 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.51 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.5 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.48 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 96.48 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.48 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 96.44 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 96.4 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.33 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 96.32 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.29 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 96.26 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 96.26 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.25 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.24 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.2 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.2 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.19 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 96.09 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.98 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.97 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.96 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 95.93 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 95.91 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.85 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 95.82 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 95.79 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.77 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 95.77 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 95.76 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 95.72 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.66 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.65 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 95.65 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.62 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 95.56 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.5 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 95.45 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 95.44 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 95.41 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 95.38 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 95.35 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 95.35 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 95.34 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.31 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 95.29 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.27 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.27 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 95.26 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 95.22 | |
| KOG2741 | 351 | consensus Dimeric dihydrodiol dehydrogenase [Carbo | 95.22 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 95.19 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 95.11 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 95.1 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 95.09 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.06 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.04 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.03 | |
| COG2344 | 211 | AT-rich DNA-binding protein [General function pred | 95.0 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.0 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.98 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 94.96 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 94.95 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.94 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 94.94 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 94.88 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.88 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 94.87 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 94.84 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 94.84 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 94.82 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 94.82 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.81 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 94.77 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.74 | |
| PLN02602 | 350 | lactate dehydrogenase | 94.7 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 94.64 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 94.62 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.61 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 94.59 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 94.51 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 94.51 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 94.46 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.45 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 94.45 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.43 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 94.41 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.38 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 94.38 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 94.32 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 94.26 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 94.25 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 94.21 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 94.17 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 94.12 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 94.09 | |
| TIGR00978 | 341 | asd_EA aspartate-semialdehyde dehydrogenase (non-p | 94.06 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.05 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 94.04 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 94.03 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 93.94 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 93.87 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 93.87 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 93.84 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 93.82 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.78 | |
| PRK02318 | 381 | mannitol-1-phosphate 5-dehydrogenase; Provisional | 93.77 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 93.73 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 93.72 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 93.72 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 93.69 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.68 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 93.62 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.55 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 93.52 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 93.49 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 93.49 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.47 | |
| PLN00106 | 323 | malate dehydrogenase | 93.45 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 93.44 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.43 | |
| TIGR01745 | 366 | asd_gamma aspartate-semialdehyde dehydrogenase, ga | 93.41 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 93.32 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 93.27 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 93.23 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 93.13 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 93.11 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 93.1 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 93.09 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 92.99 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 92.99 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 92.98 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 92.97 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 92.96 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 92.87 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.79 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.74 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.73 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 92.72 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 92.72 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 92.71 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 92.7 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 92.69 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 92.67 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 92.66 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 92.62 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 92.54 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 92.54 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 92.48 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 92.38 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 92.36 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 92.35 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 92.32 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.27 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 92.27 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 92.17 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 92.12 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 92.06 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 91.99 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 91.89 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.88 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 91.87 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.86 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 91.84 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 91.84 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 91.75 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 91.7 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 91.68 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 91.67 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 91.61 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 91.33 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 91.33 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 91.3 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 91.28 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 91.28 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 91.27 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 91.24 | |
| PRK07411 | 390 | hypothetical protein; Validated | 91.1 | |
| PLN02477 | 410 | glutamate dehydrogenase | 91.1 | |
| PLN00125 | 300 | Succinyl-CoA ligase [GDP-forming] subunit alpha | 91.08 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 91.08 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 91.06 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.05 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 91.03 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.03 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.99 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 90.88 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 90.82 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.59 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 90.51 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.28 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 90.26 | |
| PRK10083 | 339 | putative oxidoreductase; Provisional | 90.25 | |
| TIGR03570 | 201 | NeuD_NnaD sugar O-acyltransferase, sialic acid O-a | 90.14 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 90.12 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.08 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 90.04 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 89.93 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 89.92 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 89.91 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 89.8 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 89.74 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 89.69 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.69 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 89.69 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 89.63 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 89.63 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 89.63 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 89.55 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 89.49 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 89.47 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 89.36 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 89.33 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 89.32 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 89.28 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 89.25 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 89.23 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 89.23 | |
| COG0031 | 300 | CysK Cysteine synthase [Amino acid transport and m | 89.19 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 89.19 | |
| KOG3007 | 333 | consensus Mu-crystallin [Amino acid transport and | 89.18 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 89.11 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 89.05 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 89.02 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 89.0 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 88.99 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 88.84 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 88.82 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 88.82 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 88.76 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 88.7 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.69 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 88.59 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 88.58 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 88.5 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 88.47 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 88.42 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 88.41 | |
| cd05279 | 365 | Zn_ADH1 Liver alcohol dehydrogenase and related zi | 88.39 | |
| PRK05717 | 255 | oxidoreductase; Validated | 88.37 | |
| COG0289 | 266 | DapB Dihydrodipicolinate reductase [Amino acid tra | 88.35 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 88.35 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 88.3 | |
| KOG1495 | 332 | consensus Lactate dehydrogenase [Energy production | 88.27 | |
| COG4408 | 431 | Uncharacterized protein conserved in bacteria [Fun | 88.26 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 88.19 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 88.16 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 88.0 |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=348.87 Aligned_cols=219 Identities=32% Similarity=0.484 Sum_probs=198.3
Q ss_pred ccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 71 LLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 71 ~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+||||+++||+++++|.... . +. |-.|+++...|+| |+|+|||+|+||.++|.+|+++ |++|+++.|.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r-~-~~--r~ef~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvvglr~~ 69 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCR-F-MD--RDEFADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISYALRKE 69 (487)
T ss_pred CCccccccHHHHHHHhccce-e-cc--hhhccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEEecccc
Confidence 58999999999888665443 3 11 2255777899999 9999999999999999999999 99999999986
Q ss_pred -----cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccC
Q 021114 151 -----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLD 225 (317)
Q Consensus 151 -----~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~ 225 (317)
+++++.|.+.|+. ..+.+|++++||+|++++|+..+..++++++++||+|++|..+|||++.+. +..
T Consensus 70 ~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~---~i~ 141 (487)
T PRK05225 70 AIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV---GEQ 141 (487)
T ss_pred ccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC---cee
Confidence 5788889999997 468999999999999999999877788899999999999999999998653 458
Q ss_pred CCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhcc
Q 021114 226 FPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSD 301 (317)
Q Consensus 226 l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~d 301 (317)
+|++++||.++|++||+.+|++|++| +|+|++|+++ +|+++++.|.+++|..++|+.+ +++|||++|++||
T Consensus 142 ~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~E~~sD 216 (487)
T PRK05225 142 IRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSD 216 (487)
T ss_pred CCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHHHHhhc
Confidence 89999999999999999999999998 8999999999 8999999999999999999997 8999999999999
Q ss_pred chhhhhhhcCcc
Q 021114 302 IFGERGECFPTP 313 (317)
Q Consensus 302 l~~e~~il~g~~ 313 (317)
|||||+||||+.
T Consensus 217 L~GEq~vLcG~~ 228 (487)
T PRK05225 217 LMGEQTILCGML 228 (487)
T ss_pred chhhHHHHHhHH
Confidence 999999999986
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=316.78 Aligned_cols=188 Identities=39% Similarity=0.658 Sum_probs=179.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|+| |+|+|||+|++|.++|+|||++ |.+|++|.|.++.++++|.+.|+. +.+.+|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 57899 9999999999999999999999 999999999999999999999998 57999999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+||..+.++++ +|.|.|++|+.|..+||+++.+-. ..+|++++|+++.|++||+.+|++|++| +|.+++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~~---i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGL---IVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecce---ecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999998 899999999999999999985533 4789999999999999999999999998 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcc
Q 021114 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
++||.++++++.+++|+.++|+.| +++|||++|+++||||||+||||+.
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl 204 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGL 204 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHH
Confidence 999999999999999999999987 6999999999999999999999975
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=307.47 Aligned_cols=189 Identities=37% Similarity=0.591 Sum_probs=173.0
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
....|+| ++|||||+|+||.++|++|+++ |++|++++++ .++.+.+.+.|+. ..+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 4588999 9999999999999999999999 9999888876 4566677778886 358999999999999
Q ss_pred EccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 184 LavP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
+++|+..+.+++. +++++||+|++|+.+|||++.+-+ ..+|++++|+.+.|++||+.+|++|++| .|.|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~---i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCc---eeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999987777886 799999999999999999985533 4778999999999999999999999998 899999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcc
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
|+++||.++++.+.++++..++|+.| +++|||++|+++||||||+||||+.
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~ 201 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGV 201 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHH
Confidence 99999999999999999999999997 7999999999999999999999984
|
|
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-36 Score=289.24 Aligned_cols=191 Identities=38% Similarity=0.598 Sum_probs=176.2
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
....|+| ++|||||+|+||.++|++|+++ |++|++++++++++.+.+.+.|+.. .+.+|++++||+|+
T Consensus 11 ~~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVv 78 (330)
T PRK05479 11 DLSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIM 78 (330)
T ss_pred ChhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEE
Confidence 3578899 9999999999999999999999 9999888888777778888888873 48999999999999
Q ss_pred EccCCchHHHHH-HHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 184 LLISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 184 LavP~~~~~~vl-~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
+++|++.+.+++ ++++++|++|++|+++||+++.+.+. .+|+++++|++|||+|++.+|+.|+.| +|++++
T Consensus 79 LaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~~---~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l 150 (330)
T PRK05479 79 ILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQI---VPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCL 150 (330)
T ss_pred EcCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhcee---ccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEE
Confidence 999999998898 68999999999999999999987764 778899999999999999999999998 899999
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCcce
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPTPI 314 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~~~ 314 (317)
+++++|+++++.+.+++|+.++|+.+ +++|||++|+++||||||+||||+..
T Consensus 151 ~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~ 204 (330)
T PRK05479 151 IAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLT 204 (330)
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHH
Confidence 99999999999999999999999996 69999999999999999999999753
|
|
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=273.13 Aligned_cols=186 Identities=40% Similarity=0.621 Sum_probs=167.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+| |+|+|||+|+||.++|++|+++ |+++++++++++++.+.+.+.|+.. .++.|++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~~-----~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFKV-----GTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCEE-----CCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 9988888887666677777788863 468899999999999999
Q ss_pred CchHHH-HHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|+.+.. +.+++.+.++++.+|.++||+++.+++. .+|+++++|++|||+|++.+|++|++| +|++++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995555 5568999999999999999999988775 778889999999999999889999998 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHcCCC--cEEecCchhhhhccchhhhhhhcCcc
Q 021114 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYKSDIFGERGECFPTP 313 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~--~~~~tT~~~e~~~dl~~e~~il~g~~ 313 (317)
+|.++++.+.+++|+.++|.. .+++|+|++|+++|||||+|+|||+-
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~ 189 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGL 189 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHH
Confidence 999999999999999999999 47999999999999999999999863
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.8e-32 Score=238.79 Aligned_cols=161 Identities=44% Similarity=0.721 Sum_probs=136.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+| |+|+|||+|++|.++|+|||++ |++|+++.|++++++++|++.||. ..+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 678 9999999999999999999999 999999999998899999999998 5699999999999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|..+.++++ +|.++||+|++|..+|||++.+-. ..+|+++++++++|++|++.+|++|++| .|.+++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~~~---i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHYGL---IKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHCTT---S---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhcCc---ccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 899999999999999999985432 4778899999999999999999999998 8999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021114 267 QDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~ 288 (317)
||.++++.|.+++|..++|+.|
T Consensus 142 qD~sg~A~~~ala~A~~iG~~r 163 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGTR 163 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHHH
T ss_pred ECCCchHHHHHHHHHHHhCCcC
Confidence 9999999999999999999765
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-21 Score=183.28 Aligned_cols=166 Identities=18% Similarity=0.246 Sum_probs=134.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+|+||.+++++|.+. |+ ++++.++ +.+..+.+. +.|+.. ..+..|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r-~~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDL-NVSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECC-CHHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999987 64 4555444 444455444 367643 457888999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
||+...++++++.+.++++++|+ +++|+++..++. .++...+++|+|||+|... | +|++. +++
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v-------g-----~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV-------G-----EGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH-------c-----CceEE-EEe
Confidence 99888899999999899888776 789999999886 6666678999999999776 4 68888 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
.++++++..+.++.||+.+|...++ .++.|+.-|.|.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~~~~--------~E~~~d~~talsgs 174 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQTEVV--------NEKLMDVVTSISGS 174 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCEEEE--------cHHHhhhHHHhccC
Confidence 8889999999999999999976555 56677777777664
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=179.43 Aligned_cols=169 Identities=17% Similarity=0.243 Sum_probs=138.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceE-EEEecCCcccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~V-ivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||+++|+.|++. |+.+ +++.+.+....+.+.+.|++++ ...+. .+.+.++|+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d~--~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVIDE--LTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCcccc--cccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9977 5666666667788888898852 22233 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh-hHHHHhhcccccCCCceEEEEeccC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...++++++.+++++|++|+|+++++-..++......|++.+||+.|| +.|++ ..++| ++..+++||.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HP-M~G~~~~~~lf--------~~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHP-MFGPEADAGLF--------ENAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCC-CCCCccccccc--------CCCEEEEcCCCC
Confidence 999999999999999999999999974333322235566559999999 55663 33344 457999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.+.+.++.++++|+++| .+++.+|+++|=
T Consensus 147 ~~~~~~~~~~~~~~~~g-a~~v~~~~eeHD 175 (279)
T COG0287 147 TEKEWVEEVKRLWEALG-ARLVEMDAEEHD 175 (279)
T ss_pred CCHHHHHHHHHHHHHcC-CEEEEcChHHHh
Confidence 98999999999999999 788899999984
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=178.00 Aligned_cols=166 Identities=19% Similarity=0.256 Sum_probs=140.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++|||||+|+||.+++.+|.+. | .+|++.++..++....+.+.|... ..+.++++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 37899999999999999999999 7 367777776554445677777762 568889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
+|+...+++.++.+ ..++++|+ +++|+.+..++. .++ +.+++|+|||+|... | +|++. +++
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v-------g-----~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV-------G-----AGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH-------c-----Cccee-eec
Confidence 99999999999988 66777655 999999999887 777 899999999999877 5 78888 788
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
..+++++..+.+.+|++.+|...++ .+++|+.-|.+.|.
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v~~v--------~E~~~da~TaisGS 171 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKVVEV--------EESLMDAVTALSGS 171 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCeEEe--------chHHhhHHHHHhcC
Confidence 8899999999999999999977777 67888887777663
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=170.64 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=128.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|+|||+|+||+++|+.|++. |++|++++ ++.+..+.+.+.|.... ...+. +.++++|+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d-~~~~~~~~a~~~g~~~~--~~~~~-~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVS-RRESTCERAIERGLVDE--ASTDL-SLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEE-CCHHHHHHHHHCCCccc--ccCCH-hHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999999 98876554 44556677777886531 12233 578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
.++++++.++++++++|+|+++++...++. .......||+.||.. +++ ...++.+....+.|.++++||.++.++
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HPm~-G~~-~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHPMA-GTA-ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCCcC-CCC-cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 999999999999999999999997644443 111123599999943 322 112223333334568999999999999
Q ss_pred HHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 272 RATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 272 ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++++.++.+++.+| .+++++++++|
T Consensus 146 ~~~~~v~~l~~~lG-~~~v~~~~~~h 170 (279)
T PRK07417 146 NALAIVEELAVSLG-SKIYTADPEEH 170 (279)
T ss_pred HHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 99999999999999 45667777776
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.9e-19 Score=173.22 Aligned_cols=175 Identities=15% Similarity=0.084 Sum_probs=129.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+|+||+++|++|++. |+++.++.+... .....+...|+.+ ....++++++++||+||+++|++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVID--ELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCCc--ccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 987665554432 2222333445542 223577889999999999999998
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 191 ~~~vl~ei~~-~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
..++++++.+ .++++++|+|+++++...++.....++...+||+.|| +++.+ +..+..++...++|.++++||.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HP-MaG~e-~sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHP-MAGSH-KSGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCC-cCcCc-hhhHHHhcHHHHCCCcEEEecCCCC
Confidence 8889999987 4899999999999975433221123455678999999 55654 2223333334445688999999999
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
+++.++.++++++.+| .+++.++.++|
T Consensus 151 ~~~~~~~v~~l~~~lG-a~~v~~~~~~H 177 (359)
T PRK06545 151 DPDAVAELKDLLSGTG-AKFVVLDAEEH 177 (359)
T ss_pred CHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 9999999999999999 45555677776
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.6e-19 Score=165.48 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=128.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHH-HHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEA-RAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A-~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|++|+|||+|+||.+++++|++. | .+++++.++..+..+.. .+.+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 47899999999999999999988 7 46766666543322222 2222 221 3577888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 185 LISDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
++|++...++++++.++++++++| ..+.|+.+..++. .+|. .++||+|||+|... | +|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~-------g-----~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV-------G-----VGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH-------h-----hhcEE-E
Confidence 999999999999999988888765 4889999888876 5554 58999999999776 4 67887 6
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
++..+++++..+.++.+|+.+|...++ .++.|+--|.|.|.
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~~v--------~E~~~d~~tal~gs 174 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVMTI--------REENMDIASNLTSS 174 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEEEE--------chhhCceeeeeecC
Confidence 788889999999999999999966655 34556666666553
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.6e-18 Score=166.11 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=128.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP 187 (317)
++ ++|+|||+|+||+++|+.|++. |++|++.+++. ..+.+.+.|+.. ..+.++++ .++|+||+|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 55 8999999999999999999998 88876555543 235666778763 45788876 47999999999
Q ss_pred CchHHHHHHHH-HhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 188 ~~~~~~vl~ei-~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+....++++++ .++++++++|+|+++++ +..++. .++.+.+||+.||+..... + +....+.++++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~-------~-~~~~~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPES-------G-KGGWAGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCC-------C-ccccCCCeEEE
Confidence 99888999988 67899999999998865 334443 5566788999999774332 1 11234567777
Q ss_pred Eec----cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 264 tp~----~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
++. .+.++++++.++++|+.+| .+++++|+++|-+
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lG-a~v~~~~~eeHD~ 209 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEG-CRMVEMSCEEHDR 209 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCC-CEEEEeCHHHHhH
Confidence 664 5667889999999999999 7889999999964
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-18 Score=163.00 Aligned_cols=152 Identities=13% Similarity=0.161 Sum_probs=121.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+|+||.+++++|.+. | .++++.+|+.++..+. +.+.|+.. ..++.|+++++|+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 8999999999999999999988 7 5676666654333333 33457653 467888999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
||+...++++++.+.++++++|++ ++|+.+..++. .++.+.++++.|||++... + .|.+. +++
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~-------~-----~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI-------L-----KSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH-------h-----cccEE-Eee
Confidence 999999999999988888998886 59998877775 4455678999999987665 2 35664 778
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 266 HQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
..+.+++..+.++.+|+.+|...+
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~~~ 161 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLVSV 161 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcEEE
Confidence 888889999999999999996443
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-18 Score=159.43 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=126.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|||+|||+|+||.+|+++|.+. |+ +++++++++.+..+.+.+.|+.. ..+..|+++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 6899999999999999999998 87 67666354444556666778764 4678889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
++...++++++.+.++++++|+ +++|+++..++. .++.. ++++.|||.|... | .+.+. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~-------~-----~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV-------G-----EAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH-------h-----CceEE-EEeC
Confidence 9888889999988888888765 678988777664 33433 7999999998765 2 33444 6777
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
...+++..+.++.+++.+|. ++.. .++.|+.-+-+.|.
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~------~e~~~d~~~~~~g~ 171 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV------DEKLLDAVTGLSGS 171 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe------CHHHcchhHhhhcC
Confidence 77889999999999999996 4433 23445555444443
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.4e-18 Score=160.53 Aligned_cols=163 Identities=18% Similarity=0.227 Sum_probs=127.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+||+|||+|+||++++++|.+. +. ++++ .+++.+. .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~-~~~~~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYY-HTPSKKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEE-ECCChhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 3444 3333221 23332 4577888899999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
|+...++++++.++++++.+|++++|+++..++. .++....+++.|||.|... | +|. +.+++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~-------g-----~g~-t~i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV-------G-----QGS-LVFCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh-------c-----cee-EEEEeCC
Confidence 9999999999999888777788999999888776 5555557899999998544 2 344 5578888
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc-cee
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT-PII 315 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~-~~~ 315 (317)
+.+++..+.++++|+.+|...++ .++.|+--|.++|+ |-.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~~~v--------~E~~~d~~ta~~gsgPA~ 171 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGIIQEI--------KEKDMDIATAISGCGPAY 171 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcEEEE--------ChHHcchhhhhcCCHHHH
Confidence 88999999999999999976666 56667777888887 643
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.4e-18 Score=158.34 Aligned_cols=163 Identities=18% Similarity=0.201 Sum_probs=123.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||+++|++|++. |+ +|+ +++++....+.+.+.|+.+ ...+.+++. ++|+||+++|++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~-~~d~~~~~~~~~~~~g~~~---~~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVY-GYDHNELHLKKALELGLVD---EIVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEE-EEcCCHHHHHHHHHCCCCc---ccCCHHHHh-cCCEEEEeCcHH
Confidence 5899999999999999999998 75 444 4555555566777788752 134667765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCC------CChhhHHHHhhcccccCCCceEEE
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~------pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
...+++.++.+ ++++++|+++++++....+..... ....||+.||+. |.....++|+ |..+++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~--~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIESVPKH--IRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHHHHHh--cCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 999999999887753222210011 125799999974 3333334544 478889
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++.++.+++..+.++.+++.+| .+++.+++++|
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G-~~~~~~~~~~h 171 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLG-MRIVYMDAKEH 171 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhC-CEEEEeCHHHH
Confidence 9988888999999999999999 57777888877
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.3e-18 Score=166.53 Aligned_cols=151 Identities=14% Similarity=0.068 Sum_probs=117.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+ |+||+++|+.|++. .+++|+ +.++.. . ...++++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~d--------~-------~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPAD--------P-------GSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCCc--------c-------ccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 167764 555421 1 12367889999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 191 ~~~vl~ei~~~---lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
..++++++.++ ++++++|+|+++++-..++. ..+...+||+.|| +.|++...+ ++|.++++||..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HP-MaG~E~s~l--------f~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHP-MTAPPKSPT--------LKGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCC-CCCCCCCcc--------cCCCeEEEeCCC
Confidence 99999998875 89999999999997533332 1233467999999 556553223 356899999874
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
+ .+.++.+++|++.+| .+++++|+++|=
T Consensus 132 ~--~~~~~~v~~l~~~~G-a~v~~~~aeeHD 159 (370)
T PRK08818 132 L--QHWSPWVQSLCSALQ-AECVYATPEHHD 159 (370)
T ss_pred c--hhHHHHHHHHHHHcC-CEEEEcCHHHHH
Confidence 4 456789999999999 678899999983
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=155.97 Aligned_cols=174 Identities=18% Similarity=0.198 Sum_probs=128.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.++|+.|++. |+ +|++++ ++.+..+.+.+.|... ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~d-r~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGAD-RSAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEE-CCHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 75 565444 4445566777777642 12357788899999999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
...++++++.+.++++.+|+++++++...++.....++++++|+..||.. +.+. ..+..+....+.|.++++++....
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~-g~e~-~G~~~a~~~l~~g~~~~l~~~~~~ 155 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLA-GTEH-SGPDAGFAELFENRWCILTPPEGT 155 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCC-CCcc-cchhhcCHHHHCCCeEEEeCCCCC
Confidence 88888899989999999999999886433332112445677899999954 2211 011112222223578999998888
Q ss_pred CHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 270 DGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++++++.++.+++.+|. +++.++.++|
T Consensus 156 ~~~~~~~~~~l~~~lG~-~~~~~~~~~h 182 (307)
T PRK07502 156 DPAAVARLTAFWRALGA-RVEEMDPEHH 182 (307)
T ss_pred CHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 89999999999999995 5666777776
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-17 Score=152.07 Aligned_cols=166 Identities=16% Similarity=0.187 Sum_probs=123.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++|+|||+|+||.++++.|.+. | .+|.++.|+. +..+...+ .|+.. ..+.+++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~-~~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSP-EKRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCH-HHHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 37899999999999999999988 7 5666666543 33444444 36542 457788899999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|++...++++++.+++ +..+|.+++|+....++. .++.+.++++.|||.|... + .|.+ .+++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~-------~-----~~~~-~i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV-------G-----AGMT-ALTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH-------c-----CceE-EEecC
Confidence 9999999999988877 334556889998777665 5565678999999987543 2 3444 47788
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
.+.++++.+.++.||+.+|...++ .- ++.|+..+.+.|
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~--~~-----e~~~d~~~a~~~ 171 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWV--DD-----EKQMDAVTAVSG 171 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEE--CC-----hHhcchHHHHhc
Confidence 888999999999999999953333 21 335566666665
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=156.28 Aligned_cols=160 Identities=20% Similarity=0.214 Sum_probs=118.4
Q ss_pred HHHHHHhhhhhhcCC--ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCC
Q 021114 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (317)
Q Consensus 126 iA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk 203 (317)
+|+.|++. | .+ +++.+++....+.|++.|+.++ ..+..+.++++|+||||+|+....++++++.++++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~~---~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIIDE---ASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSSE---EESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCeee---ccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 57888888 7 44 4677777888889999999852 22336789999999999999999999999999999
Q ss_pred CCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHH
Q 021114 204 PNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (317)
Q Consensus 204 ~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~a 283 (317)
+|++|+|++|++....+.....+|.+.+||++|| +.|++ +..|+..+...++|.++++||..+.+.++++.++++|+.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HP-M~G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHP-MAGPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEE-SCSTS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCC-CCCCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 9999999999964322221125567899999999 55765 334444556666789999999999989999999999999
Q ss_pred cCCCcEEecCchhhh
Q 021114 284 LGSPFTFATTLEQEY 298 (317)
Q Consensus 284 lG~~~~~~tT~~~e~ 298 (317)
+|+ +++.+|+++|=
T Consensus 149 ~Ga-~~~~~~~eeHD 162 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHD 162 (258)
T ss_dssp CT--EEEE--HHHHH
T ss_pred CCC-EEEEcCHHHHH
Confidence 996 78889999984
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.6e-17 Score=147.47 Aligned_cols=153 Identities=15% Similarity=0.187 Sum_probs=117.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc---e-EEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---V-VKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~---~-Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+||+|||+|+||.+++.+|.+. |. + +++..|++.+..+ .+.+.++.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 52 3 4445554433333 333456543 457889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|++.+.++++++.+++++..+|.+++|+.+..++. .++.+..++++|||.+... | .|.+. ++..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v-------~-----~g~~~-~~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI-------G-----KSISL-YTMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH-------h-----cCCeE-EeeC
Confidence 99999999999888776433445889999888876 5666678999999997644 3 56777 4566
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 267 QDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+.+++..+.++++++.+|...++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~~ 162 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQLC 162 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 678899999999999999976654
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.1e-17 Score=161.54 Aligned_cols=162 Identities=17% Similarity=0.183 Sum_probs=129.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+|+||| +|+||+++|+.|++. |++|++..++.+...+.+.+.|+.. ..+.+++++++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899998 899999999999999 9988776665443335666677653 4578889999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
..++++++.+.++++++|+|+++++. ..+.. .++++..||+.||.. |+.. .+| .|..++++|..
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPma-Gp~~-~~~--------~g~~~il~p~~ 137 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMF-GPRT-PSL--------KGQVVILTPTE 137 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCC-CCCC-ccc--------CCCEEEEecCC
Confidence 88899999999999999999998643 33333 456678999999942 3331 122 34688899998
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
+.+++..+.++++|+.+| .+++.+++++|
T Consensus 138 ~~~~~~~~~v~~ll~~~G-~~v~~~~~e~H 166 (437)
T PRK08655 138 KRSNPWFDKVKNFLEKEG-ARVIVTSPEEH 166 (437)
T ss_pred CCCHHHHHHHHHHHHHcC-CEEEECCHHHH
Confidence 888999999999999999 56678899988
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=149.27 Aligned_cols=163 Identities=17% Similarity=0.204 Sum_probs=120.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHHHH-C-CceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A~~-~-G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|+|||+|+||.+++++|.+. |. +|.+..|+. +..+...+ . |+.. ..+..++++++|+||++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~-~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVila 69 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTP-AKAYHIKERYPGIHV----AKTIEEVISQSDLIFIC 69 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCH-HHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEe
Confidence 5799999999999999999988 73 566555543 33333332 2 5543 45788889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+|++...++++++.++++++++|+ .++|+.+..++. .++ ..++++|||++... + .|.+. ++
T Consensus 70 v~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~-------~-----~G~t~-~~ 131 (273)
T PRK07680 70 VKPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA-------L-----SGASL-FT 131 (273)
T ss_pred cCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH-------h-----hccEE-Ee
Confidence 999998899999999998888877 556788777765 444 36899999977433 2 34554 45
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
...+.+++..+.++.++..+|....+ .+|++...+.|.|
T Consensus 132 ~g~~~~~~~~~~~~~ll~~~G~~~~i--------~e~~~~~~~~l~g 170 (273)
T PRK07680 132 FGSRCSEEDQQKLERLFSNISTPLVI--------EEDITRVSSDIVS 170 (273)
T ss_pred eCCCCCHHHHHHHHHHHHcCCCEEEE--------ChHhcchhhhhcc
Confidence 55667788889999999999954444 4566666566655
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=162.59 Aligned_cols=173 Identities=12% Similarity=0.070 Sum_probs=123.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVI 183 (317)
..++++ ++|||||+|+||+++|++|++. |++|+++++. .. .+.+.+.|+.. ..+.++++. ++|+||
T Consensus 364 ~~~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~-~~-~~~a~~~Gv~~----~~~~~el~~~~aDvVI 430 (667)
T PLN02712 364 VNDGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRS-DY-SDEAQKLGVSY----FSDADDLCEEHPEVIL 430 (667)
T ss_pred cCCCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECC-hH-HHHHHHcCCeE----eCCHHHHHhcCCCEEE
Confidence 355677 9999999999999999999998 9888766555 32 25566778753 457888775 599999
Q ss_pred EccCCchHHHHHHHHHh-cCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 184 LLISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~-~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
+|+|+....++++++.. .+++|++|+|+++++ +..++. .++.+.+||+.||+.....-+..|.. ....+++.
T Consensus 431 LavP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~ 506 (667)
T PLN02712 431 LCTSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKV 506 (667)
T ss_pred ECCChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCc
Confidence 99999888889998765 689999999998774 334333 56777899999996643321112221 11122222
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
. ...+....+.++.++++|..+| .+++++|+++|-
T Consensus 507 ~---v~~~~~~~~~~~~l~~l~~~lG-a~vv~ms~eeHD 541 (667)
T PLN02712 507 R---IGSDDRRVSRCDSFLDIFAREG-CRMVEMSCAEHD 541 (667)
T ss_pred E---eCCCcchHHHHHHHHHHHHHcC-CEEEEeCHHHHH
Confidence 1 1222333456677789999999 688899999995
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=157.40 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=121.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
++|||||+|+||+++|++|++. |++|+++.+. . ..+.+.+.|+.. ..+.++++ +++|+|++|+|+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~-~-~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRS-D-HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-H-HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 8899999999999999999999 9887665554 2 235677788764 45778855 57999999999998
Q ss_pred HHHHHHHHH-hcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhH-HHHhhcccccCCCceEEEEe
Q 021114 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVR-RLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 191 ~~~vl~ei~-~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r-~lf~~G~e~~g~G~~~iitp 265 (317)
..++++++. ++++++++|+|+++++.. .++. .+|++..||+.||+. |++.. ..+ .+..++|++
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~~~~g~--------~~~~~~~~~ 188 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQSAKHGW--------DGLRFVYEK 188 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCccccchh--------ccCcEEEee
Confidence 888999875 779999999999988642 2333 557778999999954 55421 122 234566663
Q ss_pred ----ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 266 ----HQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 266 ----~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
++....+.++.++++|+.+| .+++++|+++|-+
T Consensus 189 ~~~~~~~~~~~~~~~l~~l~~~lG-a~v~~ms~eeHD~ 225 (667)
T PLN02712 189 VRIGNEELRVSRCKSFLEVFEREG-CKMVEMSCTEHDK 225 (667)
T ss_pred ccCCCccccHHHHHHHHHHHHHcC-CEEEEeCHHHHHH
Confidence 33333456777889999999 6888899999843
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.9e-15 Score=146.20 Aligned_cols=149 Identities=14% Similarity=0.093 Sum_probs=111.1
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 110 GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
.+++|+||| +|+||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 448999999 999999999999999 99887666531 11566788999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
....++++++.+ +++|++|+|+++++...........+ ..||+.||.. |++. ..| .|..+++ .+.
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~--~~fvg~HPm~-G~~~-~~~--------~~~~vv~--~~~ 217 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS--GPVLGLHPMF-GPDV-GSL--------AKQVVVV--CDG 217 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC--CCEEeeCCCC-CCCC-ccc--------CCCEEEE--cCC
Confidence 999899999888 99999999999975322221111222 2699999944 3331 111 2344544 334
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.++++++.++.+++.+| .+++.+++++|=
T Consensus 218 ~~~~~~~~~~~l~~~lG-~~v~~~~~~~HD 246 (374)
T PRK11199 218 RQPEAYQWLLEQIQVWG-ARLHRISAVEHD 246 (374)
T ss_pred CCchHHHHHHHHHHHCC-CEEEECCHHHHH
Confidence 55788999999999999 678889999884
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.1e-15 Score=138.85 Aligned_cols=143 Identities=16% Similarity=0.148 Sum_probs=104.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce---EEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+|||||+|+||.+++++|++. |+. +.+++|+.++..+.+.+. |... ..+++++++++|+|++++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 653 344444433222223333 3432 4688889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 188 DAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
|+...++++++ . ++++++|+ +++|+++..++. .++...++++.|||+|... + .|.+. +++.
T Consensus 71 p~~~~~vl~~l-~-~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~-------~-----~g~t~-~~~~ 132 (258)
T PRK06476 71 PQIAEEVLRAL-R-FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE-------R-----KGVTA-IYPP 132 (258)
T ss_pred HHHHHHHHHHh-c-cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh-------C-----CCCeE-ecCC
Confidence 98888888876 2 56777765 778888888876 5555678999999988765 3 45666 3332
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcE
Q 021114 267 QDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+.++.+|+.+|...+
T Consensus 133 -------~~~~~~l~~~lG~~~~ 148 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE 148 (258)
T ss_pred -------HHHHHHHHHhcCCcEE
Confidence 2578999999996654
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.9e-15 Score=154.01 Aligned_cols=164 Identities=18% Similarity=0.217 Sum_probs=124.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.++++.|++. |+ +|+++ +++.+..+.+.+.|+.. ....+.+++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~-d~~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAV-DRRAKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEE-ECChhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999998 84 55554 44445566777788752 12457888899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCC-CccEEEeccCCCChh-------hHHHHhhcccccCCC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPK-NIGVIAVCPKGMGPS-------VRRLYVQGKEINGAG 258 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~-~i~vV~vhPn~pg~~-------~r~lf~~G~e~~g~G 258 (317)
...++++++.++++++++|+|++|++ +..++. .++. .++|+..||.. +.+ ...+|. +
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~-G~~~~g~~~a~~~l~~--------~ 142 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIA-GSEKSGVHAANADLFR--------N 142 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcC-cCCcchhhhhhhHHhC--------C
Confidence 88889999999999999999999987 444443 3332 35677777732 222 223444 4
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
.++++++..+.+++..+.+++|++.+|. +++.++.++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~~~~~h 180 (735)
T PRK14806 143 HKVILTPLAETDPAALARVDRLWRAVGA-DVLHMDVAHH 180 (735)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 6888999999999999999999999994 5666666655
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.6e-15 Score=144.31 Aligned_cols=157 Identities=21% Similarity=0.229 Sum_probs=118.7
Q ss_pred ccccchhhhhhcCCCcc-cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..|+.. +|+|+|+. .....+|.| ||+||||+|.||+.+|+.|+.+ |++|+.+++...+. .+...+..
T Consensus 117 ~~~~~~~~-~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~~--~~~~~~~~ 186 (324)
T COG0111 117 RIPDADAS-QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPRE--RAGVDGVV 186 (324)
T ss_pred CchhhHHH-HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCchh--hhccccce
Confidence 57788888 79999976 234569999 9999999999999999999999 99987655533322 23334444
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..++++++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-. +..++ .+.+....++|..
T Consensus 187 ~----~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~-~G~i~gA~lDVf~ 261 (324)
T COG0111 187 G----VDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALD-SGKIAGAALDVFE 261 (324)
T ss_pred e----cccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHH-cCCcceEEecCCC
Confidence 2 4689999999999999999999886 776 8999999999999654 542 23333 3444445788999
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|..+.+. ++.. -|.++|||-
T Consensus 262 ~EPl~~~~p---L~~~--------pnV~~TPHi 283 (324)
T COG0111 262 EEPLPADSP---LWDL--------PNVILTPHI 283 (324)
T ss_pred CCCCCCCCh---hhcC--------CCeEECCcc
Confidence 999776643 4443 578889987
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=140.74 Aligned_cols=168 Identities=23% Similarity=0.243 Sum_probs=121.0
Q ss_pred ccccchhhhhhcCCCccc-----ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (317)
++..+++. +|.|.|... +...+++| |++||||+|.||+++|+.++.+ |++|+++.++.. .+...+
T Consensus 117 ~~~~~~~~-~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~ 186 (324)
T COG1052 117 RIHEGDRR-VREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKE 186 (324)
T ss_pred chHHHHHH-HhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhh
Confidence 57778888 999999765 34568999 9999999999999999999988 999877776643 222333
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~i 230 (317)
.++. ..+++|++++||+|+|++|.+..+. +++ +.++.||+|++|+-+ -|-. +..++ .+.......
T Consensus 187 ~~~~-----y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~-~g~i~gagl 260 (324)
T COG1052 187 LGAR-----YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALK-SGKIAGAGL 260 (324)
T ss_pred cCce-----eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-hCCcceEEe
Confidence 3344 4469999999999999999999986 776 899999999999954 4642 23333 344444578
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
+|.--+|........++-.. -+.+++||. ..+.++++.
T Consensus 261 DV~e~Ep~~~d~~l~~l~~~--------~~vvltPHia~at~ea~~~ 299 (324)
T COG1052 261 DVFENEPALFDHPLLRLDNF--------PNVVLTPHIASATEEARKA 299 (324)
T ss_pred eecCCCCCCCChhHhhccCC--------CCEEEccccccccHHHHHH
Confidence 89989996543332211111 348899988 334444433
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-15 Score=132.91 Aligned_cols=156 Identities=22% Similarity=0.243 Sum_probs=108.4
Q ss_pred cccchhhhhhcCCC--cccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRD--LFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w--~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|+| .......++.| ++|||||+|.||..+|+.|+.+ |++|+++++... ........++.
T Consensus 11 ~~~~~~~-~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~-~~~~~~~~~~~ 81 (178)
T PF02826_consen 11 LPEYHEA-QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPK-PEEGADEFGVE 81 (178)
T ss_dssp HHHHHHH-HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCH-HHHHHHHTTEE
T ss_pred HHHHHHH-HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCC-hhhhcccccce
Confidence 5566777 899999 22346789999 9999999999999999999999 999876666543 22234556775
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~ 234 (317)
..+++|++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-.+ ..+++ +.......+|..
T Consensus 82 -----~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~ 155 (178)
T PF02826_consen 82 -----YVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALES-GKIAGAALDVFE 155 (178)
T ss_dssp -----ESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHT-TSEEEEEESS-S
T ss_pred -----eeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhh-ccCceEEEECCC
Confidence 4699999999999999999998875 776 8999999999999654 5322 23332 222223456666
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|..+.+ .++.. -|.++|||-
T Consensus 156 ~EP~~~~~---~l~~~--------~nvi~TPH~ 177 (178)
T PF02826_consen 156 PEPLPADS---PLWDL--------PNVILTPHI 177 (178)
T ss_dssp SSSSSTTH---HHHTS--------TTEEEESS-
T ss_pred CCCCCCCC---hHHcC--------CCEEEeCcc
Confidence 77755433 34443 578899873
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-14 Score=131.31 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=116.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceec--------C-CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~~ 170 (317)
|++|+|||.|.||.++|..+... |++|++.+++ .+..+ ...+.|.... . ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDIS-DAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999999 9988766544 33232 3334442110 0 0023
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+.+ .+++||+||+++|++.. .++++++.++++++++| ++++|+.+..+.+ .++...++++.||+.|.+..
T Consensus 76 ~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 554 47999999999998776 46889999999999998 5889988877765 34444589999999998873
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+.. +++...++++..+.++.+++.+|...+.
T Consensus 149 ---------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~pv~ 180 (282)
T PRK05808 149 ---------KLVE--IIRGLATSDATHEAVEALAKKIGKTPVE 180 (282)
T ss_pred ---------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 2232 6788999999999999999999976553
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.5e-14 Score=131.91 Aligned_cols=155 Identities=13% Similarity=0.171 Sum_probs=114.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----CCceecC----------CCcCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~----------~~~~~~~e~ 175 (317)
+++|+|||+|+||.++|..|... |++|++.++. .+..+.+.+ .|...+. ....+.+++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 48999999999999999999998 9988766554 333333322 1210000 013477788
Q ss_pred cCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 176 ISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 176 v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+++||+||+++|++.. ..++.++.+.++++++| +.++|..+..+.+ .++...+|++.||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 9999999999999863 45888888888888877 4788887776665 4445568999999998754 2
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
. -..+++..+++++.++.+..+++.+|...+
T Consensus 146 ----~--l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v 176 (311)
T PRK06130 146 ----P--LVEVVRGDKTSPQTVATTMALLRSIGKRPV 176 (311)
T ss_pred ----c--eEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1 234667888899999999999999996544
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-14 Score=137.44 Aligned_cols=164 Identities=15% Similarity=0.127 Sum_probs=115.1
Q ss_pred cccchhhhhhcCCCcccc-------cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH
Q 021114 86 LANRDEFIVRGGRDLFKL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~-------~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (317)
+..+++. +|+|+|.... ...+|.| +++||||+|.||+.+|+.++.+ |++|+++++.... .
T Consensus 115 ~~~~~~~-~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~ 181 (311)
T PRK08410 115 INYYDRY-VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----K 181 (311)
T ss_pred HHHHHHH-HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----c
Confidence 5556666 8999996421 2468999 9999999999999999999988 9998665543211 1
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCC
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKN 229 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~ 229 (317)
..++. ..+++|++++||+|++|+|.+..++ +++ +.++.||||++++-+ .|-. +..++ .+... ..
T Consensus 182 ~~~~~-----~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~-~g~i~-Aa 254 (311)
T PRK08410 182 NEEYE-----RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALD-EKDIY-AG 254 (311)
T ss_pred ccCce-----eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-cCCeE-EE
Confidence 23443 4589999999999999999999876 776 799999999999954 4542 23333 23333 55
Q ss_pred ccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
.+|...+|..+.+.. +..- .=-|+++|||- ..+.++.+.+
T Consensus 255 LDV~~~EP~~~~~pL---~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 255 LDVLEKEPMEKNHPL---LSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred EecCCCCCCCCCChh---hccC-----CCCCEEECCccccCCHHHHHHH
Confidence 778888886544432 2210 00379999986 3455555544
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.4e-14 Score=136.54 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=115.4
Q ss_pred ccccchhhhhhcCCCccc----ccccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARA 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A~~ 159 (317)
++..+++. +|+|+|... +...+|.| +++||||+|.||..+|+.++ .+ |++|++..+... .+....
T Consensus 117 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~ 186 (323)
T PRK15409 117 RVVEVAER-VKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEER 186 (323)
T ss_pred CHHHHHHH-HHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHh
Confidence 35566767 899999642 12468999 99999999999999999998 77 999875554322 122234
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~i 230 (317)
.|.. ..+++|++++||+|++|+|.+..++ +++ +.+..||+|++++.+ .|-. +..++ .+.......
T Consensus 187 ~~~~-----~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~-~g~i~gAaL 260 (323)
T PRK15409 187 FNAR-----YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQ-KGEIHAAGL 260 (323)
T ss_pred cCcE-----ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEEe
Confidence 4554 4589999999999999999999886 776 799999999999955 4542 23333 233333457
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
+|...+|..+.+. ++.. -|+++|||- ..+.++.+
T Consensus 261 DVf~~EP~~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 261 DVFEQEPLSVDSP---LLSL--------PNVVAVPHIGSATHETRY 295 (323)
T ss_pred ecCCCCCCCCCch---hhcC--------CCEEEcCcCCCCcHHHHH
Confidence 7888888543332 3332 589999986 33444443
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.54 E-value=5e-14 Score=122.72 Aligned_cols=152 Identities=22% Similarity=0.236 Sum_probs=100.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|||||+|+||.+||++|.+. |++|.++++. .+..+...+.|... ..++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRS-PEKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESS-HHHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccc-hhhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 58999999999999999999999 9998777655 44566677778775 6799999999999999999977
Q ss_pred HH-HHHHH--HHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 191 QA-DNYEK--IFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~-~vl~e--i~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+. +++.+ +++.+++|++++|++.......++....+ ..++.||-.-=.+ ++. .-+.| .-. +...
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~G-g~~---~a~~g-------~l~-~~~g 137 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSG-GPP---GAEEG-------TLT-IMVG 137 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEES-HHH---HHHHT-------TEE-EEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeec-ccc---ccccc-------ceE-EEcc
Confidence 65 58887 99999999999999876432211100121 3456666421111 111 11123 323 3344
Q ss_pred cCCCHHHHHHHHHHHHHcCCC
Q 021114 267 QDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~ 287 (317)
.+ .++.+.++.+++.+|..
T Consensus 138 G~--~~~~~~~~~~l~~~~~~ 156 (163)
T PF03446_consen 138 GD--EEAFERVRPLLEAMGKN 156 (163)
T ss_dssp S---HHHHHHHHHHHHHHEEE
T ss_pred CC--HHHHHHHHHHHHHHhCC
Confidence 43 68999999999999953
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-14 Score=135.70 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=116.1
Q ss_pred ccccchhhhhhcCCCccc-------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH
Q 021114 85 SLANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A 157 (317)
++..+++. +++|+|... .+..+|.| +++||||+|.||..+|+.++.+ |++|++..+.... .
T Consensus 116 ~~~~~~~~-~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~----~ 183 (314)
T PRK06932 116 SLMGWYRD-QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS----V 183 (314)
T ss_pred ChHHHHHH-HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc----c
Confidence 35566766 889999532 13468999 9999999999999999999988 9998655432211 0
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCC
Q 021114 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPK 228 (317)
Q Consensus 158 ~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~ 228 (317)
...+ ..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.+ .|-. +..++ .+.....
T Consensus 184 ~~~~-------~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~-~g~i~gA 255 (314)
T PRK06932 184 CREG-------YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALE-NGKIAGA 255 (314)
T ss_pred cccc-------cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHH-cCCccEE
Confidence 0111 3489999999999999999999886 776 899999999999954 4642 23333 3334345
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHHHH
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVALG 279 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a~~ 279 (317)
..+|...+|..+.+...+.+.+- -|+++|||-- .+.++.+....
T Consensus 256 aLDV~~~EP~~~~~pl~~~~~~~-------pnvilTPHia~~t~e~~~~~~~ 300 (314)
T PRK06932 256 ALDVLVKEPPEKDNPLIQAAKRL-------PNLLITPHIAWASDSAVTTLVN 300 (314)
T ss_pred EEecCCCCCCCCCChhhHhhcCC-------CCEEECCccccCcHHHHHHHHH
Confidence 67888889965544332211111 4789999863 44555555433
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.2e-14 Score=136.39 Aligned_cols=156 Identities=24% Similarity=0.281 Sum_probs=111.5
Q ss_pred ccccchhhhhhcCCCccc--------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH
Q 021114 85 SLANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~ 156 (317)
++..+++. +|+|+|... ....+|.| ++|||||+|+||.++|+.|+.+ |++|+++++.... ..
T Consensus 118 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~ 187 (333)
T PRK13243 118 RLVEADHF-VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EA 187 (333)
T ss_pred CHHHHHHH-HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hh
Confidence 35566766 899999632 12368999 9999999999999999999999 9998765554322 22
Q ss_pred HHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCC
Q 021114 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFP 227 (317)
Q Consensus 157 A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~ 227 (317)
..+.|+. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++++.++ |-. +..++ .+.+..
T Consensus 188 ~~~~~~~-----~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~-~g~i~g 261 (333)
T PRK13243 188 EKELGAE-----YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALK-EGWIAG 261 (333)
T ss_pred HHHcCCE-----ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHH-cCCeEE
Confidence 3344554 3589999999999999999998875 665 8999999999999664 432 12222 233323
Q ss_pred CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...+|...+|.. .+ .++.. -|+++|||--
T Consensus 262 AaLDV~~~EP~~-~~---pL~~~--------~nvilTPHia 290 (333)
T PRK13243 262 AGLDVFEEEPYY-NE---ELFSL--------KNVVLAPHIG 290 (333)
T ss_pred EEeccCCCCCCC-Cc---hhhcC--------CCEEECCcCC
Confidence 457888888853 22 23432 4789999874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.8e-14 Score=134.69 Aligned_cols=157 Identities=13% Similarity=0.109 Sum_probs=110.3
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+..+++. +++|+|... ...+|.| ++|||||+|+||..+|+.|+.+ |++|+++++...+ .|+..
T Consensus 100 i~~~~~~-~~~g~w~~~-~~~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~- 162 (303)
T PRK06436 100 ICENNYN-MKNGNFKQS-PTKLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS- 162 (303)
T ss_pred hHHHHHH-HHcCCCCCC-CCCCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc-
Confidence 4455656 899999754 4579999 9999999999999999999988 9998766654221 23321
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~vh 236 (317)
...+++|++++||+|++++|.++.++ +++ +.+..||+|++++.++ |-.+ ..+++ +.......+|...+
T Consensus 163 --~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~E 239 (303)
T PRK06436 163 --IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNE 239 (303)
T ss_pred --ccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCC
Confidence 13489999999999999999999876 666 7899999999999654 4321 22222 22222245777778
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEecc--CCCHHHHHH
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~--d~~~ea~e~ 276 (317)
|..+... --|+++|||- ..+.+..+.
T Consensus 240 P~~~~~~--------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 240 PIITETN--------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred CCCccCC--------------CCCEEECCccccccCHHHHHH
Confidence 8543321 1478999993 355654443
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-13 Score=128.47 Aligned_cols=156 Identities=15% Similarity=0.163 Sum_probs=114.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceec--------CCCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE--------NGTLGD 171 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~--------~~~~~~ 171 (317)
+++|+|||+|.||.++|+.|... |++|++.+++.+ ..+. ..+.|...+ .-...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPA-ALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 47899999999999999999999 998876665432 2221 222231100 001223
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
..+++++||+||+++|..... .++.++.+.++++++|+ +++|+.+..+.+ .+....+++++||..|...
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~----- 148 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPI----- 148 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCccc-----
Confidence 346789999999999966654 47888888999999886 889988877765 3344468999999877654
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ ....+++...++++..+.++.+++.+|...++
T Consensus 149 --~-------~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~ 181 (295)
T PLN02545 149 --M-------KLVEIIRGADTSDEVFDATKALAERFGKTVVC 181 (295)
T ss_pred --C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEE
Confidence 2 23457788889999999999999999976554
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=135.68 Aligned_cols=167 Identities=16% Similarity=0.102 Sum_probs=118.0
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++... ..+...+.|
T Consensus 165 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g 235 (385)
T PRK07574 165 NYEPSHRQ-AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELG 235 (385)
T ss_pred CHHHHHHH-HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcC
Confidence 45556666 889999642 23578999 9999999999999999999999 999876665432 223333456
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++++.++ |-.+ ..++ .+.+.....+|
T Consensus 236 ~~~----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~-sG~i~GAaLDV 310 (385)
T PRK07574 236 LTY----HVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALE-SGHLAGYAGDV 310 (385)
T ss_pred cee----cCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHH-hCCccEEEEec
Confidence 542 4589999999999999999999876 776 7999999999999654 5322 2333 23333345777
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
...+|..+.+. ++.. -|+++|||- ..+.++.+.
T Consensus 311 ~~~EPlp~d~p---L~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 311 WFPQPAPADHP---WRTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred CCCCCCCCCCh---HHhC--------CCeEECCccccCcHHHHHH
Confidence 77888544433 2222 478899986 344555543
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-13 Score=133.85 Aligned_cols=166 Identities=14% Similarity=0.055 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.. ...+...+.|
T Consensus 172 ~~~~~~~~-~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g 242 (386)
T PLN03139 172 NFLPGYHQ-VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETG 242 (386)
T ss_pred CcHHHHHH-HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcC
Confidence 45566766 889999632 23478999 9999999999999999999998 99987655432 2223334456
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.++.++ +++ ++++.||+|++|+.++ |-.+ ..++ .+.+.....+|
T Consensus 243 ~~~----~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~-sG~l~GAaLDV 317 (386)
T PLN03139 243 AKF----EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACS-SGHIGGYGGDV 317 (386)
T ss_pred cee----cCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHH-cCCceEEEEcC
Confidence 542 3589999999999999999999876 776 7999999999999764 5322 2333 23333345777
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e 275 (317)
...+|..+.+.. +.. -|.++|||-- .+.++.+
T Consensus 318 ~~~EPlp~d~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 318 WYPQPAPKDHPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred CCCCCCCCCChh---hcC--------CCeEEcccccccCHHHHH
Confidence 778886554432 222 4788999873 3444444
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=128.51 Aligned_cols=149 Identities=22% Similarity=0.226 Sum_probs=108.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|+||.+||++|.+. |+++.+++|+.++..+.+++.|... ..++.|+++++|+||+++|+.++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999988777677788889875 67889999999999999999998
Q ss_pred HH-HHH---HHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEecc---CCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 AD-NYE---KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCP---KGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 ~~-vl~---ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhP---n~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
.+ ++. .+.+.+|+|++++|++.+....-++.-..+ ..+..++- .| -.++.. .| . ..|
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lD-APVsGg~~~A~------~G-------t-Lti 135 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLD-APVSGGVPGAA------AG-------T-LTI 135 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEe-cCccCCchhhh------hC-------c-eEE
Confidence 75 663 699999999999999877431111000011 12444442 12 111111 22 2 324
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
-+..+ +++.++++-+++.+|..
T Consensus 136 mvGG~--~~~f~r~~pvl~~~g~~ 157 (286)
T COG2084 136 MVGGD--AEAFERAKPVLEAMGKN 157 (286)
T ss_pred EeCCC--HHHHHHHHHHHHHhcCc
Confidence 44444 78999999999999954
|
|
| >KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-13 Score=127.45 Aligned_cols=166 Identities=20% Similarity=0.222 Sum_probs=136.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++||||.|+|..++++++... |+ +++... ...++... .+..|+.. ..+..++++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~-~~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASV-QTERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeec-CchhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 4799999999999999999988 76 333333 33444444 67778764 445589999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
+|..+.+++.++.+.+..+++|+ ...|+++..++. .++...++||+|||+|... | +|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v-------~-----eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV-------G-----EGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh-------h-----cCcEE-Eee
Confidence 99999999999888777888766 889999988876 6667789999999999876 4 78885 888
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcCc
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
..+++.+..+.++.++..+|.. .|+.+|+++.-|=|.|.
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGS 172 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGS 172 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCC
Confidence 8899999999999999999944 35689999999988885
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-13 Score=131.85 Aligned_cols=171 Identities=20% Similarity=0.183 Sum_probs=113.9
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH--H----
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--A---- 159 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~---- 159 (317)
+..+++. +++|+|... ...+|.| ++|||||+|.||..+|+.|+.+ |++|+++++...+...... .
T Consensus 137 ~~~~~~~-~~~~~w~~~-~~~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~~~~~~~~~~~ 207 (347)
T PLN02928 137 QNEMQIS-LKARRLGEP-IGDTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPEDGLLIPNGDV 207 (347)
T ss_pred HHHHHHH-HHcCCcccc-cccCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhhhhhccccccc
Confidence 3445555 788999643 2368999 9999999999999999999998 9998766554221111100 0
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i 230 (317)
..+..+.....+++|++++||+|++++|.+..++ +++ +.+..||+|++|+.++ |-. +..++ .+.......
T Consensus 208 ~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~-~g~i~gAaL 286 (347)
T PLN02928 208 DDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALE-SGHLGGLAI 286 (347)
T ss_pred cccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEEE
Confidence 0000000124589999999999999999998876 776 8999999999999654 532 22333 233333467
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
+|...+|..+.+. ++.. -|+++|||-- .+.+..+..
T Consensus 287 DV~~~EP~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~~ 323 (347)
T PLN02928 287 DVAWSEPFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRSM 323 (347)
T ss_pred ccCCCCCCCCCCh---hhcC--------CCEEECCcCCCChHHHHHHH
Confidence 8888888654433 3332 5889999963 344444443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.6e-13 Score=130.68 Aligned_cols=162 Identities=20% Similarity=0.162 Sum_probs=113.2
Q ss_pred cccchhhhhhcCCCccc-------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH
Q 021114 86 LANRDEFIVRGGRDLFK-------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR 158 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~ 158 (317)
+..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.++.+ |++|+++.+....
T Consensus 118 ~~~~~~~-~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~------ 183 (317)
T PRK06487 118 LPDYQQA-VAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP------ 183 (317)
T ss_pred HHHHHHH-HHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc------
Confidence 4556666 899999642 12468999 9999999999999999999988 9998655543211
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCC
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKN 229 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~ 229 (317)
.... ..+++|++++||+|++++|.+..++ +++ +.++.||+|++++-+ .|-. +..++ .+......
T Consensus 184 -~~~~-----~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~-~g~i~gAa 256 (317)
T PRK06487 184 -ARPD-----RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALR-SGHLGGAA 256 (317)
T ss_pred -cccc-----ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHH-cCCeeEEE
Confidence 1111 3489999999999999999999886 776 899999999999955 4532 23333 33343446
Q ss_pred ccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 230 i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
++|...+|..+.+. ++... =-|+++|||-- .+.+..+.+
T Consensus 257 LDVf~~EP~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 257 TDVLSVEPPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred eecCCCCCCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence 78888888654332 33200 14788999863 344544443
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=122.88 Aligned_cols=143 Identities=18% Similarity=0.211 Sum_probs=110.8
Q ss_pred ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchhhhh
Q 021114 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHL 219 (317)
Q Consensus 141 ~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~ 219 (317)
.+++++.|+.++..+.+.+.|+.. ..++.++++++|+|||++||+...++++++.+.++++++|+ .++|+.+..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l 85 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKL 85 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHH
Confidence 357777765444334445567653 46788899999999999999999999999988777666655 8899999888
Q ss_pred hhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 220 QSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 220 ~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
+. .++.+.+++|+|||+|... | +|++. +++.++++++..+.++.||..+|...++ .
T Consensus 86 ~~---~~~~~~~ivR~mPn~~~~~-------~-----~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~~~v--------~ 141 (245)
T TIGR00112 86 SQ---LLGGTRRVVRVMPNTPAKV-------G-----AGVTA-IAANANVSEEDRALVLALFKAVGEVVEL--------P 141 (245)
T ss_pred HH---HcCCCCeEEEECCChHHHH-------h-----CCeEE-EecCCCCCHHHHHHHHHHHHhCCCEEEE--------C
Confidence 76 6666668999999998766 3 56777 6788888899999999999999966655 4
Q ss_pred ccchhhhhhhcC
Q 021114 300 SDIFGERGECFP 311 (317)
Q Consensus 300 ~dl~~e~~il~g 311 (317)
++.|.--|.|.|
T Consensus 142 E~~~~~~talsg 153 (245)
T TIGR00112 142 EALMDAVTALSG 153 (245)
T ss_pred HHHcchHHhhcc
Confidence 566666677754
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=131.92 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=113.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-------------------HCC-ceecCCCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~ 170 (317)
+++|+|||+|+||.++|.+|... |++|+++++..+. .+... ..| +.. ..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~ 72 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEA-ERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CA 72 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHhhhccchhhhhhceEe----eC
Confidence 47999999999999999999999 9999887765432 22111 112 221 45
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++++++||+|+.++|++... .++.++.+.++++++|. -++|+.+..+.+ .+...-.++..||+.|...
T Consensus 73 ~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~---- 145 (495)
T PRK07531 73 SLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL---- 145 (495)
T ss_pred CHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc----
Confidence 8889999999999999999753 37778888888887664 556776666654 4444567999999988654
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ .-..+++...++++.++.++.+++.+|...+.
T Consensus 146 ---~-------~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~ 178 (495)
T PRK07531 146 ---L-------PLVELVGGGKTSPETIRRAKEILREIGMKPVH 178 (495)
T ss_pred ---C-------ceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEe
Confidence 2 23456778888899999999999999966543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-13 Score=127.89 Aligned_cols=156 Identities=13% Similarity=0.156 Sum_probs=106.6
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|+|.+. ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++.... .. ++.
T Consensus 121 ~~~~~~~-~~~~~~~w~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~-~~-----~~~ 186 (330)
T PRK12480 121 FPDIERR-VQAHDFTWQAEIMSKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNK-DL-----DFL 186 (330)
T ss_pred HHHHHHH-HHhCCcccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhH-hh-----hhh
Confidence 4555656 788876432 23478999 9999999999999999999998 9998766554321 11 111
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~vV~ 234 (317)
. ...++++++++||+|++++|.+..+. ++. ++++.||+|++|+.+ .|-.+ ..++ .+.......+|..
T Consensus 187 ~---~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~-~g~i~gaalDV~~ 262 (330)
T PRK12480 187 T---YKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVN-DGTLLGAAIDTYE 262 (330)
T ss_pred h---ccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHH-cCCeeEEEEeccC
Confidence 1 13489999999999999999998764 565 799999999999955 46422 2333 2333234567777
Q ss_pred eccCC----------CChhhHHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
-+|.. ..+....|+.. -|+++|||-
T Consensus 263 ~EP~~~~~~~~~~~~~~~~~~~L~~~--------~nvilTPHi 297 (330)
T PRK12480 263 NEAAYFTNDWTNKDIDDKTLLELIEH--------ERILVTPHI 297 (330)
T ss_pred CCCccccccccccccCchhhHHHhcC--------CCEEECCcc
Confidence 78841 11111235543 589999987
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.5e-13 Score=134.08 Aligned_cols=157 Identities=20% Similarity=0.210 Sum_probs=109.3
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +++|+|... ....+|.| +++||||+|.||..+|+.++.+ |++|+++++... ....++.
T Consensus 126 ~~~~~~~~-~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~~-----~~~~~~~ 192 (409)
T PRK11790 126 GIPEKNAK-AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIEDK-----LPLGNAR 192 (409)
T ss_pred ChHHHHHH-HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCcc-----cccCCce
Confidence 35556666 899999653 23478999 9999999999999999999998 999865554311 1112232
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..+++|++++||+|++++|.+..++ +++ +.+..||+|++|+.++ |-. +..+++ +.......+|..
T Consensus 193 ~----~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~-g~i~gaalDVf~ 267 (409)
T PRK11790 193 Q----VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKS-GHLAGAAIDVFP 267 (409)
T ss_pred e----cCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHc-CCceEEEEcCCC
Confidence 1 3589999999999999999999876 776 7999999999999554 532 233332 333234567777
Q ss_pred eccCCCChhh-HHHHhhcccccCCCceEEEEecc
Q 021114 235 VCPKGMGPSV-RRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 235 vhPn~pg~~~-r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
.+|....... ..++.. -|++++||-
T Consensus 268 ~EP~~~~~~~~~pL~~~--------~nvilTPHi 293 (409)
T PRK11790 268 VEPKSNGDPFESPLRGL--------DNVILTPHI 293 (409)
T ss_pred CCCCCccccccchhhcC--------CCEEECCcC
Confidence 7875432111 123332 478999986
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.3e-13 Score=127.98 Aligned_cols=155 Identities=14% Similarity=0.141 Sum_probs=108.0
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+..+.+. .+.|+|... +..++.| ++|||||+|+||..+|+.|+.+ |++|+++.+.... . .++..
T Consensus 114 ~~~~~~~-~~~~~w~~~-~~~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~- 177 (312)
T PRK15469 114 FDDYQAL-QNSSHWQPL-PEYHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS- 177 (312)
T ss_pred hHHHHHH-HHhCCcCCC-CCCCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-
Confidence 4455555 788999743 3468999 9999999999999999999999 9998766553221 1 12211
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vh 236 (317)
.....++++++++||+|++++|.+..++ +++ +.+..||+|++++.++ |-. +..+++ +.......+|...+
T Consensus 178 ~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~-g~i~gaalDVf~~E 256 (312)
T PRK15469 178 FAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDS-GKVKGAMLDVFSRE 256 (312)
T ss_pred ecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhc-CCeeeEEecCCCCC
Confidence 0113588999999999999999999876 776 7999999999999654 542 223332 32323346777778
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
|..+.+. ++.. -|+++|||--
T Consensus 257 Pl~~~~p---l~~~--------~nvi~TPHia 277 (312)
T PRK15469 257 PLPPESP---LWQH--------PRVAITPHVA 277 (312)
T ss_pred CCCCCCh---hhcC--------CCeEECCcCC
Confidence 8543322 3332 5889999863
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-12 Score=119.86 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=111.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC------------CceecC---------CCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------GFTEEN---------GTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------G~~~~~---------~~~ 169 (317)
+++|+|||.|.||.++|..+... |++|+++++.. +..+.+.+. +...++ ...
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 75 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISD-EALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT 75 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe
Confidence 47999999999999999999998 99987776543 223332211 111000 014
Q ss_pred CCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
.++++++++||+||.++|.+.. .++++++.+.++++++|+ ..++..+..+.+ .++...+|++.||-.|...
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~~--- 149 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIWK--- 149 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCCc---
Confidence 5788899999999999997743 458889999999999886 445555545543 2333457999999776443
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
...+.+++...++++.++.+.++++.+|...+
T Consensus 150 -----------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv 181 (287)
T PRK08293 150 -----------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPI 181 (287)
T ss_pred -----------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 24566788899999999999999999996544
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=120.05 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=113.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (317)
+++|+|||+|.||.++|..|.+. |++|+++++. ++..+.+.+ .|...+. ....
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 73 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIK-QEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL 73 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47999999999999999999999 9998776654 333333221 1111000 0135
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEE-EEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiV-i~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++++++||+||.|+|.+... .++.++.+.++++++| ++++.+.+..+.+ ......++++.|+-.|.+.
T Consensus 74 ~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~---- 146 (288)
T PRK09260 74 DLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK---- 146 (288)
T ss_pred cHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc----
Confidence 7888999999999999998764 4778888899999987 4777777666654 3333357889999755432
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+.-..+++...++++.++.++.+++.+|...+.
T Consensus 147 ----------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~ 179 (288)
T PRK09260 147 ----------MKLVELIRGLETSDETVQVAKEVAEQMGKETVV 179 (288)
T ss_pred ----------CceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 134557788888999999999999999965543
|
|
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.1e-13 Score=136.13 Aligned_cols=156 Identities=19% Similarity=0.167 Sum_probs=111.5
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +|+|+|... +...+|.| ++|||||+|.||+++|+.|+.+ |++|+++++.. ..+.+.+.|+..
T Consensus 114 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~ 183 (525)
T TIGR01327 114 IPQADAS-LKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL 183 (525)
T ss_pred HHHHHHH-HHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE
Confidence 4556666 899999643 23478999 9999999999999999999999 99886655432 233455567652
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
..+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.++ |-. +..++ .+.......+|+..
T Consensus 184 ----~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~-~g~i~gAaLDVf~~ 258 (525)
T TIGR01327 184 ----VDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALE-EGHVRAAALDVFEK 258 (525)
T ss_pred ----cCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHH-cCCeeEEEEecCCC
Confidence 3489999999999999999998875 775 7889999999999664 432 22333 23333345777777
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
+|. +.+ .|+.. -|+++|||--
T Consensus 259 EP~-~~~---pL~~~--------~nvi~TPHia 279 (525)
T TIGR01327 259 EPP-TDN---PLFDL--------DNVIATPHLG 279 (525)
T ss_pred CCC-CCC---hhhcC--------CCeEECCCcc
Confidence 883 222 24432 5788888863
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-13 Score=106.06 Aligned_cols=89 Identities=24% Similarity=0.278 Sum_probs=70.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCC---ceEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G---~~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
||||||.|+||.+++++|.+. | .++.+. .|+.++..+.+.+.+... ...+..|+++++|+|||++||
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~---~~~~~~~~~~~advvilav~p 71 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA---TADDNEEAAQEADVVILAVKP 71 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE---ESEEHHHHHHHTSEEEE-S-G
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc---ccCChHHhhccCCEEEEEECH
Confidence 799999999999999999999 8 788766 555444445567777543 123799999999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+...++++++ +...++++|+++
T Consensus 72 ~~~~~v~~~i-~~~~~~~~vis~ 93 (96)
T PF03807_consen 72 QQLPEVLSEI-PHLLKGKLVISI 93 (96)
T ss_dssp GGHHHHHHHH-HHHHTTSEEEEE
T ss_pred HHHHHHHHHH-hhccCCCEEEEe
Confidence 9999999999 777788888743
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.6e-12 Score=116.97 Aligned_cols=158 Identities=17% Similarity=0.129 Sum_probs=108.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
|||+||| .|+||.++++.|.+. |++|+++.|..++..+.+.. .|+.. .....+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 6899997 999999999999999 99988876654332222221 12210 001236678899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEE-ecCchh-----------------hhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-----------------GHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l-----------------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
+++|++...++++++.+.++ +++|++ +.|+.. +.+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 99999999999988877775 477764 457654 22333 456547899999999876543
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCcE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFT 289 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~al-G~~~~ 289 (317)
. .....+...++ -.| ++++.+.+.+|.+.+ |+..+
T Consensus 150 ~------~~~~~~~~~~v--~Gd-d~~ak~~v~~L~~~~~G~~~v 185 (219)
T TIGR01915 150 D------VDDEVDCDVLV--CGD-DEEAKEVVAELAGRIDGLRAL 185 (219)
T ss_pred C------CCCCCCCCEEE--ECC-CHHHHHHHHHHHHhcCCCCcc
Confidence 2 12223444433 333 356999999999999 98765
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.8e-13 Score=134.98 Aligned_cols=154 Identities=18% Similarity=0.160 Sum_probs=111.3
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +++|+|... ....+|.| ++|||||+|.||..+|+.|+.+ |++|+++++... .+.+...|+..
T Consensus 116 ~~~~~~~-~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~--~~~~~~~g~~~ 185 (526)
T PRK13581 116 IPQAHAS-LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYIS--PERAAQLGVEL 185 (526)
T ss_pred HHHHHHH-HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC--hhHHHhcCCEE
Confidence 4556666 899999642 23468999 9999999999999999999999 999866554322 33445567653
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
.+++|++++||+|++|+|.++.++ +++ +.++.||+|++++.++ |-. +..++ .+.......+|+..
T Consensus 186 -----~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~-~g~i~gAaLDVf~~ 259 (526)
T PRK13581 186 -----VSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALK-SGKVAGAALDVFEK 259 (526)
T ss_pred -----EcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHh-cCCeeEEEEecCCC
Confidence 389999999999999999998875 775 8999999999999664 432 12232 23333345777778
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|. +.+ .|+.. -|+++|||-
T Consensus 260 EP~-~~~---pL~~~--------~nvilTPHi 279 (526)
T PRK13581 260 EPP-TDS---PLFEL--------PNVVVTPHL 279 (526)
T ss_pred CCC-CCc---hhhcC--------CCeeEcCcc
Confidence 883 222 24432 478889986
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=117.85 Aligned_cols=155 Identities=17% Similarity=0.216 Sum_probs=112.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH--------------HCCceecC---------C
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------------AAGFTEEN---------G 167 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------------~~G~~~~~---------~ 167 (317)
+++|+|||.|.||.++|..+... |++|++.+++ ++..+.+. +.|...+. .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVS-EEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCC-HHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 9988766654 33333221 11221000 0
Q ss_pred CcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhh
Q 021114 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (317)
Q Consensus 168 ~~~~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~ 244 (317)
...+. +.+++||+||+++|++.. .++++++.+.++++++|+ .++|..+..+.. .+...-+|++.||..|.+.+
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12344 578999999999999874 458888888899999876 567777766664 44445689999999988763
Q ss_pred HHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ +.. +.+...++++..+.+..+++.+|...+.
T Consensus 152 ------~------~vE--v~~g~~T~~e~~~~~~~~~~~lgk~~v~ 183 (291)
T PRK06035 152 ------K------LIE--VVRAALTSEETFNTTVELSKKIGKIPIE 183 (291)
T ss_pred ------c------cEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 1 222 3488889999999999999999976543
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.3e-12 Score=123.13 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=119.4
Q ss_pred ccccchhhhhhcCCCcccc---cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFKL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~---~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++...+|. +++|+|.... ....+.| |+|||+|+|.||..+|++|+.+ |..+.+..|. +...+.+.+.+
T Consensus 135 ~~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~ 205 (336)
T KOG0069|consen 135 RFSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYY 205 (336)
T ss_pred hhhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhc
Confidence 58888888 9999993321 3589999 9999999999999999999999 9544444443 34445555555
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEE-EecCchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILG-LSHGFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi-~~~Gv~l------~~~~~~~~~l~~~i~v 232 (317)
.. ..+.+|.+.++|+|++++|+++.+. +++ +.+.+||+|.+|+ .+-|-.+ ..+ ..+.....+.+|
T Consensus 206 ~~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL-~sG~i~~aGlDV 279 (336)
T KOG0069|consen 206 AE-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEAL-KSGKIAGAGLDV 279 (336)
T ss_pred cc-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHH-hcCCcccccccc
Confidence 44 3489999999999999999999986 777 8999999999998 4446422 222 244555668889
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
.-.+| .+-+. ++. --|++++||- .++.+..+..
T Consensus 280 f~~EP-~~~~~---l~~--------~dnvv~~PHigs~t~~t~~~m 313 (336)
T KOG0069|consen 280 FEPEP-PVDHP---LLT--------LDNVVILPHIGSATLETREKM 313 (336)
T ss_pred cCCCC-CCCcc---hhc--------ccceeEecccccCcHHHHHHH
Confidence 98999 44333 222 2457788976 4444444433
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-11 Score=118.18 Aligned_cols=153 Identities=16% Similarity=0.090 Sum_probs=106.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|||||+|+||.+||++|.+. |++|.++++.. + .+...+.|... ..+..|+++++|+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99887776653 2 34455677764 56888999999999999999866
Q ss_pred H-HHHH---HHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 192 ~-~vl~---ei~~~lk~gaiVi~~~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
. +++. .+.+.+++|++|+|++.+.....++.. ..-..++.|+. +|-.-+.. ..+.| .-.++ ..
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd-aPVsGg~~---~a~~g-------~l~~~-~g 136 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD-APVSGGEI---GAREG-------TLSIM-VG 136 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE-ecCCCCHH---HHhcC-------cEEEE-Ec
Confidence 4 4663 367788999999999887543211100 11134677887 57333222 22233 32323 34
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 267 QDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
. +++..+.++.+++.+|...+.
T Consensus 137 G--~~~~~~~~~p~l~~~g~~~~~ 158 (292)
T PRK15059 137 G--DEAVFERVKPLFELLGKNITL 158 (292)
T ss_pred C--CHHHHHHHHHHHHHHcCCcEE
Confidence 4 378899999999999965443
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=114.39 Aligned_cols=155 Identities=20% Similarity=0.252 Sum_probs=110.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceec--------C-CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N-GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------~-~~~~ 170 (317)
+++|+|||.|.||.++|..|..+ |++|+++++.. +..+.+.+ .|...+ . ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSA-DRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 37899999999999999999999 99988776553 33333221 232100 0 0124
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++ +.+++||+||.++|..... .+++++.+.++++++|+ .++++.+..+.+ .+....++++.|+-.|.+.+
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 55 4578999999999987553 47789999999999886 788887766654 33334578999987766542
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+ . -+.+...++++.++.+..+++.+|...+.
T Consensus 150 --~~-------v--ei~~g~~t~~~~~~~~~~~~~~~gk~~v~ 181 (292)
T PRK07530 150 --KL-------V--ELIRGIATDEATFEAAKEFVTKLGKTITV 181 (292)
T ss_pred --ce-------E--EEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 11 2 35677788899999999999999976543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=117.24 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=104.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh---hcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE---TISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e---~v~~ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|.+++++ .+..+...+.|... ..++++ .++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~-~~~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHD-QDAVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 9998776554 44455666667653 345555 44678999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
....++++++.+.+++|++|++++... ...... ..-..+++|+.....+..... + .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a----~-------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGR----E-------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHH----h-------cCC-e-eee
Confidence 976779999999999999999887652 111111 122356788875554422111 1 243 3 445
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021114 266 HQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~ 286 (317)
..+ +++.+.++.+++.+|.
T Consensus 135 gG~--~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GGD--GEAFARAEPLFADVAP 153 (298)
T ss_pred CCC--HHHHHHHHHHHHHhcC
Confidence 554 7899999999999996
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.2e-12 Score=121.42 Aligned_cols=135 Identities=19% Similarity=0.186 Sum_probs=92.8
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHH-HhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+..+++. +++|.|.+. ....+|.| ++|||||+|+||.++|+.| +.+ |++|+..++..... ...++
T Consensus 121 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~ 188 (332)
T PRK08605 121 FNQIQTK-VREHDFRWEPPILSRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYV 188 (332)
T ss_pred hHHHHHH-HHhCCcccccccccceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhc
Confidence 4445556 788877432 22468999 9999999999999999999 556 88876554432211 11222
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV 233 (317)
.. ..++++++++||+|++++|.+..++ +++ +.++.||+|++|++++ |..+ ..+++ +.......+|.
T Consensus 189 ~~----~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~-g~i~gaalDV~ 263 (332)
T PRK08605 189 DY----KDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDN-GLIKGAALDTY 263 (332)
T ss_pred cc----cCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeEEEEecc
Confidence 21 3489999999999999999999887 444 7889999999999654 5422 22222 22223346777
Q ss_pred Eecc
Q 021114 234 AVCP 237 (317)
Q Consensus 234 ~vhP 237 (317)
..+|
T Consensus 264 ~~Ep 267 (332)
T PRK08605 264 EFER 267 (332)
T ss_pred cCCC
Confidence 7776
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.6e-11 Score=111.30 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=95.1
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||. |.||..++..++++ |+.|. +++||+||||+|...
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98863 257999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhhcccccCCCceEEEEeccC
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
..++++++. .+|+|++|++....+. ..+||+.||+. |++ ..++| .+++++ .++
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~~-------~~~~vg~HPMf-Gp~~a~~~lf----------~~~iv~-~~~ 98 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKKY-------SGKIVSIHPLF-GPMSYNDGVH----------RTVIFI-NDI 98 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHHh-------cCCEEecCCCC-CCCcCccccc----------ceEEEE-CCC
Confidence 999888764 3788999998633221 34799999943 533 22222 356665 556
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 269 VDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.++++++.++++|+ | .+++++|+++|=
T Consensus 99 ~~~~~~~~~~~l~~--G-~~~~~~t~eeHD 125 (197)
T PRK06444 99 SRDNYLNEINEMFR--G-YHFVEMTADEHD 125 (197)
T ss_pred CCHHHHHHHHHHHc--C-CEEEEeCHHHHH
Confidence 77888999999998 6 689999999994
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=4e-11 Score=114.41 Aligned_cols=155 Identities=12% Similarity=0.088 Sum_probs=107.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
|++|+|||.|.||.++|..|.+. |++|+++++..+ ..+. ..+.|..+.. ....
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999887766532 2232 2244542100 1245
Q ss_pred CHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+++++++++|+|+.++|.... ..++.++.+..+++.++. -+++.....+.+ .++....++..||-.|...+
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 888899999999999998753 346777766666665553 223334444544 34445679999997664331
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.-..+++....+++.++.++.+++.+|...+
T Consensus 149 -----------~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v 179 (308)
T PRK06129 149 -----------PVVEVVPAPWTAPATLARAEALYRAAGQSPV 179 (308)
T ss_pred -----------ceEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 1234778888899999999999999995544
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.2e-12 Score=120.64 Aligned_cols=175 Identities=20% Similarity=0.169 Sum_probs=128.9
Q ss_pred ccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 87 ANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 87 ~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
....-. ++.|+|... +...+|.| |++||||+|.||.-+|..++.. |++++.++.-. ..+++.+.|+.
T Consensus 123 ~~A~~s-~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi~--~~~~~~a~gvq-- 190 (406)
T KOG0068|consen 123 GQASAS-MKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPIT--PMALAEAFGVQ-- 190 (406)
T ss_pred chhhee-eecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCCC--chHHHHhccce--
Confidence 333434 899999664 46799999 9999999999999999999999 99876555543 34677788887
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cC-c-----hhhhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HG-F-----LLGHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~G-v-----~l~~~~~~~~~l~~~i~vV~vh 236 (317)
..+++|+++.||+|-||+|..+.++ +++ +.+..||+|.-|+.+ .| + .+..++ .+..-+..++|...+
T Consensus 191 ---~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~-sG~vaGaAlDVy~~E 266 (406)
T KOG0068|consen 191 ---LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALD-SGQVAGAALDVYPEE 266 (406)
T ss_pred ---eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHh-cCcccceeeecccCC
Confidence 5799999999999999999999876 776 789999999999854 34 3 123333 344445578899999
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccCCC-HH-----HHHHHHHHHHHcCC
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD-GR-----ATNVALGWSVALGS 286 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~-~e-----a~e~a~~l~~alG~ 286 (317)
|...+.. ++|-.. -|.+.|||...+ .| +.|.++++...+..
T Consensus 267 pp~~~~~-~~Lv~h--------pnVi~TpHlgasT~EAq~~iaievaea~~~~~~~ 313 (406)
T KOG0068|consen 267 PPKNGWD-SELVSH--------PNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING 313 (406)
T ss_pred CCccchh-HHHhcC--------CceeecCccccchHHHHHHHHHHHHHHHHHHhcc
Confidence 9665432 334433 578899998543 33 34555666666654
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.2e-11 Score=115.90 Aligned_cols=147 Identities=16% Similarity=0.143 Sum_probs=102.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~---ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+++|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~-~~~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVN-QEAVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 5899999999999999999999 9998776655 34445566677664 5688888876 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 189 ~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.. ..++++++.+.+++|++|++++.... ..+.+ ..-..++.|+. +|-.-+.. .-+ .|. . +.
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~vd-apV~G~~~---~a~-------~g~-~-~~ 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE--ELAERGIHYVD-CGTSGGVW---GLR-------NGY-C-LM 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH--HHHHcCCeEEe-CCCCCCHH---HHh-------cCC-e-EE
Confidence 84 45688899999999999999876632 12211 11123566653 33121111 001 234 3 34
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021114 265 VHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~ 286 (317)
+..+ +++.+.++.+++.+|.
T Consensus 135 ~gG~--~~~~~~~~~~l~~~~~ 154 (299)
T PRK12490 135 VGGD--KEIYDRLEPVFKALAP 154 (299)
T ss_pred ecCC--HHHHHHHHHHHHHhcC
Confidence 5554 6789999999999997
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-12 Score=123.30 Aligned_cols=170 Identities=19% Similarity=0.209 Sum_probs=109.8
Q ss_pred ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHH-HH
Q 021114 85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-AR 158 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-A~ 158 (317)
++..+++. +++|+|. +. ....+|.| ++|||||+|.||..+|+.++ .+ |++|+++++......+. ..
T Consensus 137 ~i~~~~~~-~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~ 208 (386)
T PLN02306 137 RIVEADEF-MRAGLYEGWLPHLFVGNLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVT 208 (386)
T ss_pred ChHHHHHH-HHcCCCccccccccCCcCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhh
Confidence 35556666 8888884 21 12368999 99999999999999999985 67 99986555432211111 01
Q ss_pred HCCc-------eecC-CCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhh
Q 021114 159 AAGF-------TEEN-GTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQS 221 (317)
Q Consensus 159 ~~G~-------~~~~-~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~ 221 (317)
..|. ...+ ....+++|++++||+|++|+|.+..++ +++ +.++.||+|++++.+ .|-. +..+++
T Consensus 209 ~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s 288 (386)
T PLN02306 209 AYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKA 288 (386)
T ss_pred hhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence 1221 0000 012489999999999999999998876 776 899999999999955 4532 233332
Q ss_pred cccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 222 IGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 222 ~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
+.......+|...+|.. .. .++.. -|+++|||- ..+.+..+
T Consensus 289 -g~i~gAaLDVf~~EP~~-~~---~L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 289 -NPMFRVGLDVFEDEPYM-KP---GLADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred -CCeeEEEEeCCCCCCCC-cc---hHhhC--------CCEEECCccccCcHHHHH
Confidence 33333457777788842 22 24433 589999986 33444433
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-12 Score=108.60 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||.|++|.++++.|.+. |+.|...+.++..+.+++.+. .. .....+++|+++++|+|+|++||+.+
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 7999999999999999999999 998654444433444444332 11 12245788999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEecCch-hhhhhhcccCCCCCccEEEecc
Q 021114 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCP 237 (317)
Q Consensus 192 ~~vl~ei~~~--lk~gaiVi~~~Gv~-l~~~~~~~~~l~~~i~vV~vhP 237 (317)
.++.+++... .++|++|++++|-. ...++. .-..+..+...||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999863 333331 1123556677777
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2e-11 Score=115.13 Aligned_cols=149 Identities=20% Similarity=0.220 Sum_probs=104.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~ 192 (317)
+|||||+|+||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+.++++++||+||+++|+....
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIG-PEVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 9998766655 44456666777653 458889999999999999998765
Q ss_pred H-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 193 D-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 193 ~-vl---~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+ ++ +.+.+.+++|++|++++..... .+.+ .+ ..+++|+. +|- .+... ... +|... +.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~---~l~~~g~~~~~-~pv-~g~~~--~a~-------~g~l~-i~ 134 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK---AVKEKGIDYLD-APV-SGGEI--GAI-------EGTLS-IM 134 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCCEEe-cCC-CCCHH--HHh-------cCCEE-EE
Confidence 4 54 3477888999999988766432 2222 22 23677777 573 22221 111 12333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. ++++.+.++.+++.+|...+
T Consensus 135 ~gg--~~~~~~~~~~ll~~lg~~~~ 157 (291)
T TIGR01505 135 VGG--DQAVFDRVKPLFEALGKNIV 157 (291)
T ss_pred ecC--CHHHHHHHHHHHHHhcCCeE
Confidence 443 37899999999999995443
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.6e-11 Score=114.85 Aligned_cols=150 Identities=18% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~~~~~~~~~e~v 176 (317)
||+|+|||+|.||.++|..|.+. |++|.++.+.. +..+...+.| .. ...+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDP-EQAAEINADRENPRYLPGIKLPDNLR----ATTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHcCcccccCCCCcCCCCeE----EeCCHHHHH
Confidence 47999999999999999999999 99987776643 3334344432 22 135777889
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cchh-------hhhhhcccCCCC-CccEEEeccCCCChhhHHH
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLL-------GHLQSIGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv~l-------~~~~~~~~~l~~-~i~vV~vhPn~pg~~~r~l 247 (317)
+++|+||+++|+....++++++.+.++++++|+++. |+.. ..++. .++. ....+...|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999877789999999999999888654 7753 12222 2232 123455667543221
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. .| .....++ .. .+.+..+.+..+++..|..
T Consensus 143 ~-~g-----~~~~~~~-~~--~~~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 143 A-RG-----LPTAVVI-AS--TDEELAERVQELFHSPYFR 173 (325)
T ss_pred H-cC-----CCcEEEE-Ee--CCHHHHHHHHHHhCCCCEE
Confidence 1 12 2122222 22 2467888999999988854
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.6e-11 Score=109.13 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=107.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
||+|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|+|++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 58999999999999999999999 99999998887765544433 33321 2468999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC-----ch----h---------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhc
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHG-----FL----L---------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~G-----v~----l---------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (317)
.+..++.++.+.+. |++|+|+.= .. . +.+++ .+|.. ++|..--+.+... ++++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~----l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAV----LADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHH----hccC
Confidence 99999999998886 889987531 10 0 11121 33332 4554333333332 2222
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+.. +...++...+ |.++.+.+.+|.+.+|+.-+
T Consensus 143 ~~~~--~~~~v~vagD--D~~Ak~~v~~L~~~iG~~~l 176 (211)
T COG2085 143 AKPG--GRRDVLVAGD--DAEAKAVVAELAEDIGFRPL 176 (211)
T ss_pred CCcC--CceeEEEecC--cHHHHHHHHHHHHhcCccee
Confidence 1111 2223233333 36899999999999998765
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.6e-11 Score=114.15 Aligned_cols=156 Identities=15% Similarity=0.113 Sum_probs=113.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceecC-----CCcCCHHh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~-----~~~~~~~e 174 (317)
+++|+|||.|.||.++|..+... |++|++++...+ ..+.+ .+.|..... ....++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999987766532 22211 112211000 12458889
Q ss_pred hcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhc
Q 021114 175 TISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (317)
++++||+|+-++|.+...+ ++.++.+.++++++|. -+++..+..+.+ .+...-+|++.||--|.+-++
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 9999999999999888653 8889999999999765 445666656654 333445899999977766531
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.++++.+|...+.
T Consensus 151 --------LVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~ 181 (321)
T PRK07066 151 --------LVEVLGGERTAPEAVDAAMGIYRALGMRPLH 181 (321)
T ss_pred --------eEEEeCCCCCCHHHHHHHHHHHHHcCCEeEe
Confidence 1225688899999999999999999965543
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.7e-11 Score=121.58 Aligned_cols=152 Identities=14% Similarity=0.086 Sum_probs=104.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc---CCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~v~~---ADvVILa 185 (317)
.+|||||+|.||.+||++|.+. |++|.+++|+.++..+...+ .|... -....+++|+++. +|+||++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~~ 79 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVIIL 79 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEEE
Confidence 6899999999999999999999 99999888875543322221 14320 0014588888876 9999999
Q ss_pred cCCchHHH-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceE
Q 021114 186 ISDAAQAD-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 186 vP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
+|+...++ +++++++.+++|.+|+|.+-... ....+ ..-.++++|+. +|-.=+... .+ .|. +
T Consensus 80 v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~g------A~----~G~-~ 145 (493)
T PLN02350 80 VKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEG------AR----NGP-S 145 (493)
T ss_pred CCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHH------hc----CCC-e
Confidence 99998865 88899999999999999876532 11111 11134677664 341111110 10 344 4
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
|.+..+ +++.+.++.+++.+|.+
T Consensus 146 -im~GG~--~~a~~~v~pvL~~ia~k 168 (493)
T PLN02350 146 -LMPGGS--FEAYKNIEDILEKVAAQ 168 (493)
T ss_pred -EEecCC--HHHHHHHHHHHHHHhhh
Confidence 566665 68999999999999964
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1e-10 Score=111.31 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=104.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|+|||+|+||.++|++|.+. |++|++++++. +..+...+.|... ..++.++++++|+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~-~~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNP-QAVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 36899999999999999999999 99887776654 4455566667653 5688899999999999999987
Q ss_pred HH-HHHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 191 QA-DNYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 191 ~~-~vl~---ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+. .++. .+.+.+++|+++++++.+... .+.. .....++.|+- .|-.-+... -+. |... +
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~~---a~~-------g~l~-~ 135 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSDN---AIT-------GTLL-L 135 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHHH---HHh-------CcEE-E
Confidence 54 4653 577889999999988766432 2221 11123566663 453222211 112 2333 3
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.... +++..+.++.+++.+|...+.
T Consensus 136 ~~gg--~~~~~~~~~p~l~~~g~~~~~ 160 (296)
T PRK15461 136 LAGG--TAEQVERATPILMAMGNELIN 160 (296)
T ss_pred EECC--CHHHHHHHHHHHHHHcCCeEe
Confidence 3333 468899999999999964433
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=8e-11 Score=112.03 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=104.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~---ADvVILavP~ 188 (317)
|+|||||+|+||.++|++|.+. |++|++++++. +..+.+.+.|... ..+++|++++ +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~-~~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNP-EAVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 5899999999999999999999 99987766653 4455566678764 4578888875 6999999999
Q ss_pred ch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 189 AA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 189 ~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.. ..++++++.+.+++|+++++++.... ..+.. ..-..++.|+- +|..=+... =+ .|. . +-
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~---a~-------~g~-~-~~ 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWG---LE-------RGY-C-LM 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHH---Hh-------cCC-e-EE
Confidence 84 45688889999999999998865432 11211 11134678885 774433221 01 233 3 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCC
Q 021114 265 VHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~ 286 (317)
+.. +++..+.++.+++.+|.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~ 154 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAP 154 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcc
Confidence 444 36889999999999997
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-10 Score=108.68 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=102.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|.||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+.+|+++++|+||+++|+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~~ 71 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSPH 71 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 9988765544 44455566667653 45788999999999999998876
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 ~~-vl---~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
.+ ++ +++.+.+++|+++++++.+... .+.+ .+ ..+++|+-. |-.-+... .. .|...++
T Consensus 72 ~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~---~~~~~g~~~~d~-pv~g~~~~----a~------~g~l~i~ 137 (296)
T PRK11559 72 VKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA---ALKAKGIEMLDA-PVSGGEPK----AI------DGTLSVM 137 (296)
T ss_pred HHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH---HHHHcCCcEEEc-CCCCCHHH----Hh------hCcEEEE
Confidence 54 55 3578889999999998877542 2222 11 224555443 42211110 00 1233323
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. +++..+.+..+++.+|...+
T Consensus 138 -~gg--~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 138 -VGG--DKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred -ECC--CHHHHHHHHHHHHHhcCCeE
Confidence 333 36889999999999996544
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.3e-10 Score=109.84 Aligned_cols=150 Identities=20% Similarity=0.135 Sum_probs=103.7
Q ss_pred EEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH-HHH
Q 021114 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ-ADN 194 (317)
Q Consensus 116 IIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~-~~v 194 (317)
|||+|+||.++|++|.+. |++|++++++. +..+...+.|... ..++.++++++|+||+++|+..+ .++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFP-DAVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 99987776653 4455666677753 45889999999999999999665 557
Q ss_pred H---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 195 Y---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 195 l---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
+ +++.+.+++|++|++++++.....+.....+ ..++.|+-. |-.-+. ...+.| ... +-...+
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vda-Pv~Gg~---~~a~~g-------~l~-~~~gg~-- 135 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDA-PVSGGV---GGARAG-------TLT-FMVGGV-- 135 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEC-CCCCCH---HHHhhC-------cEE-EEECCC--
Confidence 7 5788899999999999987543221110122 246777764 622221 122333 333 223333
Q ss_pred HHHHHHHHHHHHHcCCCcEE
Q 021114 271 GRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~~~~ 290 (317)
++..+.++.+++.+|...++
T Consensus 136 ~~~~~~~~~~l~~~g~~~~~ 155 (288)
T TIGR01692 136 AEEFAAAEPVLGPMGRNIVH 155 (288)
T ss_pred HHHHHHHHHHHHHhcCCeEe
Confidence 57889999999999965443
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.9e-10 Score=115.24 Aligned_cols=152 Identities=15% Similarity=0.153 Sum_probs=114.3
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCc-------------eec
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGF-------------TEE 165 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~-------------~~~ 165 (317)
.+++|||||+|.||..||..+... |++|++.++..+ ..+. ..+.|. ..
T Consensus 6 ~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~- 77 (507)
T PRK08268 6 SIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAG-AAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP- 77 (507)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-
Confidence 458999999999999999999999 999987776543 3333 244552 22
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
..++++ +.+||+||-++|.+...+ ++.++...++++++|. ++++..+..+.. .....-+|++.|.--|.+
T Consensus 78 ---~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa~ 150 (507)
T PRK08268 78 ---VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPVP 150 (507)
T ss_pred ---eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCcc
Confidence 346655 569999999999988754 6778888889999984 788887766654 333335789999877776
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+ .-..++....++++.++.+..+++.+|...+.
T Consensus 151 v~--------------~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~ 184 (507)
T PRK08268 151 LM--------------KLVEVVSGLATDPAVADALYALARAWGKTPVR 184 (507)
T ss_pred cC--------------eeEEEeCCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 63 12446677788899999999999999976543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.2e-10 Score=116.16 Aligned_cols=150 Identities=15% Similarity=0.095 Sum_probs=103.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcC---cCCEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSDLVL 183 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~---~ADvVI 183 (317)
+.+|||||+|+||.+||++|.+. |++|.+++|+.++ .+...+ .|... ....+++|+++ ++|+|+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~-~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Ii 71 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEK-TEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVI 71 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEE
Confidence 36899999999999999999999 9998887776443 233322 25321 12568888886 589999
Q ss_pred EccCCchHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCC
Q 021114 184 LLISDAAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (317)
Q Consensus 184 LavP~~~~~-~vl~ei~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G 258 (317)
+++|+.... ++++++.+++++|.+|+|++... ....+. ...++++|+. +|-.=+.. .-+ .|
T Consensus 72 l~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~---gA~-------~G 137 (470)
T PTZ00142 72 LLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEE---GAR-------YG 137 (470)
T ss_pred EEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHH---HHh-------cC
Confidence 998887765 58899999999999999987542 112111 2235677764 33111211 111 23
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. + +.+..+ +++.+.++.+++.+|.+
T Consensus 138 ~-~-lm~GG~--~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 138 P-S-LMPGGN--KEAYDHVKDILEKCSAK 162 (470)
T ss_pred C-E-EEEeCC--HHHHHHHHHHHHHHhhh
Confidence 3 4 566665 68999999999999975
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-10 Score=109.82 Aligned_cols=147 Identities=14% Similarity=0.113 Sum_probs=107.0
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~e 197 (317)
|.+||++|.+. |++|+++++..+ ..++...+.|... ..+..|+++++|+||+++|+..+. ++++.
T Consensus 32 GspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~----AaS~aEAAa~ADVVIL~LPd~aaV~eVl~G 101 (341)
T TIGR01724 32 GSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV----VSDDKEAAKHGEIHVLFTPFGKGTFSIART 101 (341)
T ss_pred HHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee----cCCHHHHHhCCCEEEEecCCHHHHHHHHHH
Confidence 88999999999 999988876532 2234566778775 568999999999999999999876 58888
Q ss_pred HHhcCCCCcEEEEecCchhh---hhhhcccC-CCCCccEEEeccCC-CChhhHHHHhhcccccCCCceEEEEeccCCCHH
Q 021114 198 IFSCMKPNSILGLSHGFLLG---HLQSIGLD-FPKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~l~---~~~~~~~~-l~~~i~vV~vhPn~-pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~e 272 (317)
+++++++|++|+|++-+... +.-+..+. -++++.+...||-+ |++.-.+.|.-+ |.. +.-..-.+++
T Consensus 102 Laa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~------~~~--~~~~~~A~ee 173 (341)
T TIGR01724 102 IIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIG------GKP--TAGKEMATEE 173 (341)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCceeeec------ccc--ccccccCCHH
Confidence 99999999999999876432 11111111 25789999999932 444332234332 222 3355678899
Q ss_pred HHHHHHHHHHHcCCC
Q 021114 273 ATNVALGWSVALGSP 287 (317)
Q Consensus 273 a~e~a~~l~~alG~~ 287 (317)
+++...+|.++.|..
T Consensus 174 ~i~~~~el~~~~~~~ 188 (341)
T TIGR01724 174 QISKCVELAKSTGKK 188 (341)
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999999965
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=116.45 Aligned_cols=147 Identities=18% Similarity=0.123 Sum_probs=102.9
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhc---CcCCEEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETI---SGSDLVLL 184 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~v---~~ADvVIL 184 (317)
+|||||+|+||.+||++|.+. |++|++++|+.++ .+...+. | +.. ..++++++ +++|+|++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~-~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil 69 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEK-TDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIML 69 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEE
Confidence 489999999999999999999 9998888776543 3444433 2 332 44677766 56899999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCch-h--hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGFL-L--GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 185 avP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv~-l--~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
++|+... .++++++.+++++|.+|+|.+... . ..... ....+++.||.....+-.... + .|.
T Consensus 70 ~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~--~l~~~gi~fvdapVsGG~~gA----~-------~G~- 135 (467)
T TIGR00873 70 MVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYK--ELKAKGILFVGSGVSGGEEGA----R-------KGP- 135 (467)
T ss_pred ECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHH--HHHhcCCEEEcCCCCCCHHHH----h-------cCC-
Confidence 9999655 468899999999999999988542 1 11111 122457888876665522211 1 233
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+ +.+..+ +++.+.++.+++.++.+
T Consensus 136 ~-im~GG~--~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGGS--AEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCCC--HHHHHHHHHHHHHHhhh
Confidence 3 445554 78999999999999975
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=104.16 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=111.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
+++|||||.|.||..+|..+... |++|++.++..+ ..+. ..+.|...+. ....
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEE-LATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47899999999999999999999 999887776543 2222 3344432100 0134
Q ss_pred CHHhhcCcCCEEEEccCCchHHH--HHHHHHhcC-CCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCM-KPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~l-k~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
++ +.+++||+||-++|.+...+ ++.++...+ ++++++.. +++..+..+.. .....-++++.|+-.|.+.+
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 66 55899999999999988754 777777777 89999874 55556655554 22233469999998876653
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHH-HcCCCcEE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTF 290 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~-alG~~~~~ 290 (317)
+ ..=+.+...++++.++.+..++. .+|...+.
T Consensus 152 ----~--------lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~ 184 (286)
T PRK07819 152 ----P--------LVELVPTLVTSEATVARAEEFASDVLGKQVVR 184 (286)
T ss_pred ----c--------eEEEeCCCCCCHHHHHHHHHHHHHhCCCCceE
Confidence 1 12367888999999999999988 59966543
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=109.87 Aligned_cols=158 Identities=15% Similarity=0.093 Sum_probs=97.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~v~~ADv 181 (317)
|+|+|||+|.||.++|..|.+. |++|.++.|+.+ ..+...+. |.... -....+++|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~-~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPE-FAAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 8999999999999999999999 999888777533 23323222 31100 0014578888999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-----hhhhhhcccCCCC---CccEEEeccCCCChhhHHHHhhcc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-----LGHLQSIGLDFPK---NIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-----l~~~~~~~~~l~~---~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
|++++|.....+++ +.++++.+++ .+.|+. ...+.+ .+++ .--.+...|+.+... +
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~---~l~~~~~~~~~~~~gP~~a~~~-------~- 142 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR---VLEFLTQARVAVLSGPNHAEEI-------A- 142 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH---HHHHhcCCCeEEEECccHHHHH-------H-
Confidence 99999999765554 5567787766 455653 222221 1111 112346777664332 1
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchh
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFG 304 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~ 304 (317)
+|.... +.-...+.+..+.++.+++..|.+-.+ ..|+.|
T Consensus 143 ----~~~~~~-~~~~~~~~~~~~~v~~ll~~~~~~v~~--------~~di~g 181 (328)
T PRK14618 143 ----RFLPAA-TVVASPEPGLARRVQAAFSGPSFRVYT--------SRDRVG 181 (328)
T ss_pred ----cCCCeE-EEEEeCCHHHHHHHHHHhCCCcEEEEe--------cCCccc
Confidence 222221 111223467889999999988855444 456666
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=111.98 Aligned_cols=155 Identities=12% Similarity=0.130 Sum_probs=112.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~~~ 170 (317)
+++|+|||.|.||..||+++... |++|++++++.+ ..+. ..+.|...+. ....
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e-~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 77 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAE-ALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVT 77 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeC
Confidence 48999999999999999999999 999988776643 2222 2334421000 0134
Q ss_pred CHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++++ +.+||+||.++|.+...+ ++.++...++++++|. .+++..+..+.. .+....++++.|.--|.+.++
T Consensus 78 ~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~~-- 151 (503)
T TIGR02279 78 DLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVMA-- 151 (503)
T ss_pred CHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccCc--
Confidence 6655 579999999999877653 7778888889998876 677776655543 333345799999877777631
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-..+.....++++.++.+..+++.+|...+.
T Consensus 152 ------------LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~ 182 (503)
T TIGR02279 152 ------------LVEVVSGLATAAEVAEQLYETALAWGKQPVH 182 (503)
T ss_pred ------------eEEEeCCCCCCHHHHHHHHHHHHHcCCeeeE
Confidence 2446677788999999999999999976553
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.8e-10 Score=121.14 Aligned_cols=114 Identities=13% Similarity=-0.049 Sum_probs=92.3
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCC-ccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~-i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
||||+|+....++++++.++++++++|+|+++++-...+.....++.. .+||+.|| +.|++ ...|+..+...++|++
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HP-MaG~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHP-IAGRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCC-cCcCc-chhhhhhChhHhCCCe
Confidence 689999999999999999999999999999999743322211244432 57999999 55665 3455555555667899
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
+++||.++.++++++.+++||..+| .+++.+|+++|=
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~G-a~~~~~~~~~HD 115 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAAR-ADVRAMSAEQHD 115 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcC-CEEEECCHHHHH
Confidence 9999999999999999999999999 779999999984
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-10 Score=113.03 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=100.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.++.| ++|||||+|+||..+|+.|+.+ |++|+++++.... . .+.. ...+++|++++||+|++|
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~----~~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDG----DFVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCc----cccCHHHHHhhCCEEEEe
Confidence 67899 9999999999999999999999 9998665432211 1 1211 145899999999999999
Q ss_pred cCCch----HH-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAA----QA-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~----~~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+. .+ .+++ +.+..||+|++++.++ |-.+ ..++ .+......++|...+|. +... +..
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~-~g~i~~a~LDV~e~EP~-~~~~---L~~--- 246 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALL-SGEDLDAVLDVWEGEPQ-IDLE---LAD--- 246 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHH-hCCCcEEEEeCCCCCCC-CChh---hhh---
Confidence 99976 24 4776 7899999999999654 5322 2222 22233335677777884 3222 221
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCCC
Q 021114 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGSP 287 (317)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~l~~alG~~ 287 (317)
.+.++|||-- .+.+..+ .++.+.+-+|..
T Consensus 247 ------~nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~ 281 (381)
T PRK00257 247 ------LCTIATPHIAGYSLDGKARGTAQIYQALCRFFGIP 281 (381)
T ss_pred ------CCEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 3788999863 3444333 234444555654
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-09 Score=104.74 Aligned_cols=150 Identities=19% Similarity=0.150 Sum_probs=106.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||.+|+.+|.+. |++|++++|.. +..+...+.|... ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~-~k~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTK-DKCKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcH-HHHHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 8999999999999999999999 99999888764 4456677788875 67999999999999999999887
Q ss_pred HH-HHH---HHHhcCCCCcEE-EEecCchh---hhhhhcccCCCCCccEEEe--ccCCCChhhHHHHhhcccccCCCceE
Q 021114 192 AD-NYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSIGLDFPKNIGVIAV--CPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 192 ~~-vl~---ei~~~lk~gaiV-i~~~Gv~l---~~~~~~~~~l~~~i~vV~v--hPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
.+ ++- .++..+++|... +|++-+.. ..+.+ ..-..+..+|-. +=.-.+++ +|.-.
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~--~i~~~~~~~vDAPVSGg~~~A~-------------~G~Lt 169 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK--AISNKGGRFVDAPVSGGVKGAE-------------EGTLT 169 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH--HHHhCCCeEEeccccCCchhhh-------------cCeEE
Confidence 64 664 477778888877 78887632 12221 111234555532 11111221 23444
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
|+ ... ++...+.+..+++.+|...++
T Consensus 170 im-agG--de~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 170 IM-AGG--DEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred EE-ecC--cHHHHHHHHHHHHHhcceEEE
Confidence 33 333 378889999999999965544
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=2.1e-09 Score=104.99 Aligned_cols=145 Identities=12% Similarity=0.166 Sum_probs=98.0
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~e 197 (317)
|.+||.+|.+. |++|++++++.+. ..+...+.|+.. ..+..++++++|+||+++|+.. ..+++++
T Consensus 32 G~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~----asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~ 101 (342)
T PRK12557 32 GSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV----VSDDAEAAKHGEIHILFTPFGKKTVEIAKN 101 (342)
T ss_pred HHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE----eCCHHHHHhCCCEEEEECCCcHHHHHHHHH
Confidence 89999999999 9998877765431 334556677763 4588889999999999999988 5678889
Q ss_pred HHhcCCCCcEEEEecCchhh----hhhhcccCCCC---CccEEEeccCCC-ChhhHHHHhhcccccCCCceEEE-----E
Q 021114 198 IFSCMKPNSILGLSHGFLLG----HLQSIGLDFPK---NIGVIAVCPKGM-GPSVRRLYVQGKEINGAGINSSF-----A 264 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~l~----~~~~~~~~l~~---~i~vV~vhPn~p-g~~~r~lf~~G~e~~g~G~~~ii-----t 264 (317)
+.++++++++|++++.+... .+.. .++. .+.++..||-.. +.+ ++ .-+++ +
T Consensus 102 L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~v~Gae------~g-------~l~Vm~gg~t~ 165 (342)
T PRK12557 102 ILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAAVPGTP------QH-------GHYVIAGKTTN 165 (342)
T ss_pred HHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCccccccc------cc-------hheEEeCCCcc
Confidence 99999999999988776432 2222 2232 334444455221 111 11 11223 2
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
+....+++.++.++.+++++|. +++.+..
T Consensus 166 ~~~~~~~e~~e~v~~LL~a~G~-~v~~~~~ 194 (342)
T PRK12557 166 GTELATEEQIEKCVELAESIGK-EPYVVPA 194 (342)
T ss_pred cccCCCHHHHHHHHHHHHHcCC-EEEEeCH
Confidence 3445578999999999999994 4455553
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.3e-09 Score=101.32 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
.+ |+|+|||+|+||.++|+.|.+. |++|.++.|+.. .+++++++++|+|++++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 8999999999999999999999 999987776531 2677889999999999999
Q ss_pred chHHHHHHHHHhc-CCCCcEEEEec
Q 021114 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~-lk~gaiVi~~~ 212 (317)
....++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 8777888888764 78888887654
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-10 Score=112.97 Aligned_cols=150 Identities=17% Similarity=0.203 Sum_probs=99.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+|.| ++|||||+|+||+.+|+.|+.+ |++|+++++.... ..... ...+++|++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~-----~~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEG-----DFRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----ccccc-----ccCCHHHHHhhCCEEEEe
Confidence 57899 9999999999999999999999 9998765432111 01111 145899999999999999
Q ss_pred cCCchH----H-HHHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+.. + .+++ +.+..||+|++++.++ |-. +..+++ +.......+|...+|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 998874 3 4776 7999999999999654 532 223332 2232335677778884 3222 3321
Q ss_pred cccCCCceEEEEeccC-CCHHHHH-----HHHHHHHHcCC
Q 021114 253 EINGAGINSSFAVHQD-VDGRATN-----VALGWSVALGS 286 (317)
Q Consensus 253 e~~g~G~~~iitp~~d-~~~ea~e-----~a~~l~~alG~ 286 (317)
.+ ++|||-- .+.+... .++.+.+.+|.
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 23 7899863 3444443 33555556663
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=106.54 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=100.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-------------------HCC-ceecCCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~~~~~~~ 171 (317)
|+|+|||+|.||.++|..|.+. |++|+++++. .+..+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~-~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDID-QEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECC-HHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998665544 33222211 123 221 357
Q ss_pred HHhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCchh---hhh----hhcccCCCCCcc-EE
Q 021114 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLL---GHL----QSIGLDFPKNIG-VI 233 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~----------~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~----~~~~~~l~~~i~-vV 233 (317)
..++++++|+||+++|... ...+++++.+.+++|++|++.+++.. ..+ .+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999753 44566788899999999998876521 111 111000111233 36
Q ss_pred EeccCCCCh--hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcC-CCcEEecCch
Q 021114 234 AVCPKGMGP--SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLE 295 (317)
Q Consensus 234 ~vhPn~pg~--~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG-~~~~~~tT~~ 295 (317)
..+|..... .+.+++. ...++.- .+++..+.++.+++.++ ...+..++++
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVGG---ETEEAGEAVAELYAPIIEDGPVLVTSIE 202 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEEe---CCHHHHHHHHHHHHHhccCCCEEcCCHH
Confidence 777743221 1111111 1232323 35789999999999997 4445545544
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-09 Score=104.71 Aligned_cols=163 Identities=13% Similarity=0.101 Sum_probs=103.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC---------ceecC--CCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---------~~~~~--~~~~~~~e~v~~AD 180 (317)
++|+|||.|+||.++|..|.+. | +++++.++ ++..+...+.+ +...+ ....+.+++++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aD 79 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCAD 79 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCC
Confidence 7999999999999999999998 8 45555544 22232222222 10000 01357778899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEE-EEecCchh-------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiV-i~~~Gv~l-------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+||+++|.....++++++.+++++++++ ....|+.. ..+++ .++....++...|+.+... +
T Consensus 80 lVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------~- 148 (341)
T PRK12439 80 VVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------A- 148 (341)
T ss_pred EEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH-------H-
Confidence 9999999999999999999999888754 47778753 23433 3444334567888664332 1
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhh
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~ 306 (317)
+|.++.++...+ +.+..+.+.+++..-|.+-. +.+|+.|-+
T Consensus 149 ----~g~~t~~via~~-~~~~~~~v~~lf~~~~~~v~--------~s~Di~gve 189 (341)
T PRK12439 149 ----EGYAAAAVLAMP-DQHLATRLSPLFRTRRFRVY--------TTDDVVGVE 189 (341)
T ss_pred ----cCCCeEEEEEeC-CHHHHHHHHHHhCCCCEEEE--------EcCchHHHH
Confidence 244443333322 34555666666665553332 367877754
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.5e-09 Score=93.03 Aligned_cols=152 Identities=15% Similarity=0.155 Sum_probs=102.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCcee---------cCCCcCCH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTE---------ENGTLGDI 172 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~---------~~~~~~~~ 172 (317)
||+|||.|.||..+|..+... |++|.+.+...+ ..+.+ .+.|... .-....++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 699999999999999999999 999987766432 22111 1122110 00114678
Q ss_pred HhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHh
Q 021114 173 YETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~ 249 (317)
+++. +||+||=++|..... +++.++.+.++++++|. .++++.+..+.. .++..-+|++.|+-.|.+.+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~----- 144 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLM----- 144 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccC-----
Confidence 8888 999999999987764 48999999999999986 778888877775 34445689999997776542
Q ss_pred hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.-.=+.++..++++.++.+.++++.+|...+
T Consensus 145 ---------~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv 175 (180)
T PF02737_consen 145 ---------PLVEVVPGPKTSPETVDRVRALLRSLGKTPV 175 (180)
T ss_dssp ----------EEEEEE-TTS-HHHHHHHHHHHHHTT-EEE
T ss_pred ---------ceEEEeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 1122678889999999999999999985444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.6e-09 Score=103.79 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=118.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
.+|||||+|+||+=+|.-|.+. |+.++...|.+ --..+...|..- .+.+.+++ +..|+|++|+.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 7899999999999999999999 99887777764 233455555442 44566655 68999999999888
Q ss_pred HHHHHHHHHh-cCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 191 QADNYEKIFS-CMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~~vl~ei~~-~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+.+++...-+ .+|.|++++++-+++. ..++. .+|++.+++-+||+ -|+.. + --.++|.+.++--+
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpm-fGPks------v-nh~wqglpfVydkv 189 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPM-FGPKS------V-NHEWQGLPFVYDKV 189 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCC-cCCCc------C-CCccccCceEEEEe
Confidence 8788775543 4899999998887753 33333 78999999999994 33331 0 12235667766554
Q ss_pred cC----CCHHHHHHHHHHHHHcCCCcEEecCchhhhh
Q 021114 267 QD----VDGRATNVALGWSVALGSPFTFATTLEQEYK 299 (317)
Q Consensus 267 ~d----~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~ 299 (317)
.- ..++.-|.+.+++...|++ .+++|.++|-+
T Consensus 190 Rig~~~~r~ercE~fleIf~cegck-mVemS~eeHDk 225 (480)
T KOG2380|consen 190 RIGYAASRPERCEFFLEIFACEGCK-MVEMSYEEHDK 225 (480)
T ss_pred eccccccchHHHHHHHHHHHhcCCe-EEEEEeecccc
Confidence 32 3378889999999999965 45677777743
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.1e-09 Score=119.46 Aligned_cols=153 Identities=18% Similarity=0.172 Sum_probs=103.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||.+||++|.+. |++|+++++.. +..+...+.|... ..++.+++++||+|++++|+..+
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~~ 393 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYK-PTLVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEVQ 393 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEecCChHH
Confidence 8999999999999999999999 99987776653 3445555667653 56889999999999999997665
Q ss_pred H-HHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC---CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 192 A-DNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF---PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 192 ~-~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l---~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
. +++ ..+.+.+++|+++++++.+.....++....+ +.++.|+- .|-.-++.. -+ .|.-. +.
T Consensus 394 v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A~-------~G~L~-im 461 (1378)
T PLN02858 394 AENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---AA-------MGTLT-IM 461 (1378)
T ss_pred HHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---hh-------cCCce-EE
Confidence 4 566 2578889999999998876432211100011 14566653 232222221 01 23333 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+..+ ++..+.++.+++.+|...+
T Consensus 462 vgG~--~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 462 ASGT--DEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred EECC--HHHHHHHHHHHHHHhCcEE
Confidence 3333 5789999999999996543
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-09 Score=118.49 Aligned_cols=153 Identities=15% Similarity=0.115 Sum_probs=105.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|||||+|+||..||++|.+. |++|.+++++. +..+...+.|... ..++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~-~~~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEIST-PLMEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 99988777654 4455666778764 67999999999999999999887
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCC--ccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 192 AD-NY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 192 ~~-vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~--i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.+ ++ +.+++.+++|++++|++-+.....++....+ ..+ +.|+- +|-.=+.. .-+.| .-. +.
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lD-aPVsGg~~---~A~~G-------~L~-im 141 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVD-AYVSKGMS---DLLNG-------KLM-II 141 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEE-ccCcCCHH---HHhcC-------CeE-EE
Confidence 65 65 3688889999999998866432221100011 223 55553 33111111 11123 223 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+..+ ++..+.++.+++.+|...+
T Consensus 142 vGG~--~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 142 ASGR--SDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred EcCC--HHHHHHHHHHHHHhcCceE
Confidence 4443 5788999999999995443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-08 Score=102.06 Aligned_cols=163 Identities=17% Similarity=0.113 Sum_probs=100.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--------------- 175 (317)
+++|+|||+|.||.++|.+|.+. |++|+.+++ +++..+ +...|..+ .....++++
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~-~~~~v~-~l~~g~~~--~~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDI-NQHAVD-TINRGEIH--IVEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeC-CHHHHH-HHHCCCCC--cCCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 999865554 444343 33444332 011122222
Q ss_pred cCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh-------hhhhcccC--CC----CCcc-
Q 021114 176 ISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSIGLD--FP----KNIG- 231 (317)
Q Consensus 176 v~~ADvVILavP~~----------~~~~vl~ei~~~lk~gaiVi~~~Gv~l~-------~~~~~~~~--l~----~~i~- 231 (317)
+++||+||+|+|.. .+..+++++.+++++|++|++.+.+... .+.+.+.. .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 34899999999974 4455777899999999999987765321 12211111 11 0112
Q ss_pred EEEecc--CCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCch
Q 021114 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (317)
Q Consensus 232 vV~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~ 295 (317)
.+...| -.++....+... .+.++ .. .+++..+.++.+++.++...+..++++
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vv--gG-~~~~~~~~~~~ly~~~~~~~~~~~~~~ 206 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVI--GG-MTPVCSARASELYKIFLEGECVVTNSR 206 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEE--Ee-CCHHHHHHHHHHHHHhcCCCeeeCCHH
Confidence 345667 445544332221 23332 22 357889999999999996555555554
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.4e-09 Score=91.97 Aligned_cols=95 Identities=23% Similarity=0.335 Sum_probs=69.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec----------CCCcCCHHhhcCcCCEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----------NGTLGDIYETISGSDLV 182 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----------~~~~~~~~e~v~~ADvV 182 (317)
||+|||.|++|.++|..|.+. |++|.++.++. +..+.-.+.+.... -....|++++++++|+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~-~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDE-EQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCH-HHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccH-HHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 99998877754 33332222221100 01246899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv 214 (317)
++++|.+.+.++++++.++++++++++ ...|+
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998877 45577
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=92.50 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=101.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCC---------CcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~---------~~~~~~e~v~~ADvV 182 (317)
|+|+|||.|.||..+|..|.+. |++|.+..| . +..+...+.|+..... ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 998877776 3 3344445556432110 123566667899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~ 254 (317)
|+++|..+..++++++.+.++++++|+ ...|+. ...+.. .+|++ .++ ......|+....
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~~--------- 139 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVVQ--------- 139 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEEE---------
Confidence 999999988889999999888888765 557874 334443 34443 222 233233333310
Q ss_pred cCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 255 ~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
.+.+. ..+........+..+.+.+++...|.......++
T Consensus 140 ~~~~~-~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di 178 (305)
T PRK12921 140 RADHR-LTFGEIPGQRSERTRAVRDALAGARLEVVLSENI 178 (305)
T ss_pred cCCCc-EEEcCCCCCcCHHHHHHHHHHHhCCCCceecHHH
Confidence 01222 2243333333455666677788888655553333
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=95.44 Aligned_cols=161 Identities=22% Similarity=0.260 Sum_probs=100.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--C-----------CcCCHHhhcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G-----------TLGDIYETIS 177 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~-----------~~~~~~e~v~ 177 (317)
+++|+|||.|.||.++|..|.+. |++|++..|.. ..+...+.|....+ + ...+. +.++
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 72 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRAR--IGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALA 72 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecHH--HHHHHHhcCceeecCCCcceecccceeEeccCh-hhcc
Confidence 37899999999999999999999 99988776642 23344445543210 0 01233 5678
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEecc-----CCCChhhHHHHhh
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQ 250 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~ 250 (317)
.+|+||+++|.....++++++.+.++++++|+ ...|+. ...++. .+++..-+.+.+| .+|+... .
T Consensus 73 ~~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~~~~~l~~---~~~~~~~~~g~~~~~~~~~~pg~~~-----~ 144 (341)
T PRK08229 73 TADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVRNADVLRA---ALPGATVLAGMVPFNVISRGPGAFH-----Q 144 (341)
T ss_pred CCCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCCcHHHHHH---hCCCCcEEEEEEEEEEEecCCceEE-----e
Confidence 99999999999988889999999999999876 446764 334443 4444322222233 2333221 1
Q ss_pred cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
.+.|. ..+. . .+..+.+..+++..|....+..++....
T Consensus 145 ----~~~g~-l~~~--~---~~~~~~~~~~l~~~g~~~~~~~di~~~~ 182 (341)
T PRK08229 145 ----GTSGA-LAIE--A---SPALRPFAAAFARAGLPLVTHEDMRAVQ 182 (341)
T ss_pred ----cCCCc-eEec--C---CchHHHHHHHHHhcCCCceecchhHHHH
Confidence 11222 2222 1 1345777888888887666644444333
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-08 Score=90.85 Aligned_cols=156 Identities=19% Similarity=0.210 Sum_probs=97.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-------CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------~~~~~~~e~v~~ADvVIL 184 (317)
|+|+|||.|.||..+|..|.+. |++|.+..|.. +..+...+.|+...+ ....+.+++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRG-AHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECCh-HHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 99987777643 334445555653100 113345555 89999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccccC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g 256 (317)
++|..+..++++++.+.+.++++|+ ...|+. ...+.. .+++. .++ ......|+... ..|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~---------~~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVR---------HTG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEE---------EcC
Confidence 9999988889999999998876554 677875 334443 33332 232 22222333321 012
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.|... +...++.. +..+.+.+++...|.....
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~~~~ 171 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLDVEW 171 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCCCCC
Confidence 34433 44433322 4456677778887765433
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-08 Score=96.80 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=82.1
Q ss_pred cccchhhhhhcCCCcccc--cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~--~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++.|+..-+-.+.|.... ...++.| ++++|||+|.||.++|+.|+.. |++|++.+|+.. ..+.+.+.|+.
T Consensus 125 va~~n~~~~Ae~ai~~al~~~~~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~-~~~~~~~~g~~ 196 (287)
T TIGR02853 125 VAIYNSIPTAEGAIMMAIEHTDFTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSA-DLARITEMGLI 196 (287)
T ss_pred eEEEccHhHHHHHHHHHHHhcCCCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHHCCCe
Confidence 334444444444443211 2358899 9999999999999999999999 999888877643 34445556654
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
. ....++++.++++|+||+++|..... .+.++.|+++++|+|++..
T Consensus 197 ~--~~~~~l~~~l~~aDiVint~P~~ii~---~~~l~~~k~~aliIDlas~ 242 (287)
T TIGR02853 197 P--FPLNKLEEKVAEIDIVINTIPALVLT---ADVLSKLPKHAVIIDLASK 242 (287)
T ss_pred e--ecHHHHHHHhccCCEEEECCChHHhC---HHHHhcCCCCeEEEEeCcC
Confidence 2 11346778899999999999975221 3577889999999988643
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.8e-09 Score=88.58 Aligned_cols=121 Identities=17% Similarity=0.080 Sum_probs=77.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++++ ++|+|||.|.||.++++.|++. | .+|.+++++.++..+.+.+.+.........+.+++++++|+||++
T Consensus 16 ~~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~ 88 (155)
T cd01065 16 ELKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINT 88 (155)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeC
Confidence 4667 9999999999999999999987 6 567666665433333344434210000145777889999999999
Q ss_pred cCCchH-HH--HHHHHHhcCCCCcEEEEecCchh--hhhhhcccCCCCCccEEEeccCC
Q 021114 186 ISDAAQ-AD--NYEKIFSCMKPNSILGLSHGFLL--GHLQSIGLDFPKNIGVIAVCPKG 239 (317)
Q Consensus 186 vP~~~~-~~--vl~ei~~~lk~gaiVi~~~Gv~l--~~~~~~~~~l~~~i~vV~vhPn~ 239 (317)
+|+..+ .+ .+. ...++++++++|++.... ...+. .-..++.++.++|..
T Consensus 89 ~~~~~~~~~~~~~~--~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~~ 142 (155)
T cd01065 89 TPVGMKPGDELPLP--PSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEML 142 (155)
T ss_pred cCCCCCCCCCCCCC--HHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHHH
Confidence 999886 21 121 123688999998876532 11111 112356788777733
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-07 Score=90.51 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=111.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceecC---------CCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEEN---------GTLGD 171 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~---------~~~~~ 171 (317)
|++|+|||.|.||..+|..+... |++|.+.+.+.+ +++++..+.|...++ ....+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 48999999999999999999887 899887766522 222333334422211 00123
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
+. .+++||+||=+++-+... +++.++-.+.+|++++- .+++..+..+.+. ..-| -+|++.|+-.|.+-++
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~m~--- 149 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPLMP--- 149 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCcce---
Confidence 32 789999999999987764 48999999999999996 7888887766641 2223 4699999977766631
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
-.=+.+...++++.++.+.++...+|..
T Consensus 150 -----------LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 150 -----------LVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred -----------eEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 1224577788999999999999999954
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.9e-07 Score=99.27 Aligned_cols=157 Identities=10% Similarity=0.087 Sum_probs=115.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceecC---------CC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN---------GT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~---------~~ 168 (317)
+.|++|+|||.|.||..+|..+... |++|++.+...+ ..+ ...+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999999 999887765532 222 12223321100 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..++ +.+++||+||=++|.+-.. +++.++-+.++++++|. .++++.+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2345 4579999999999988765 48999999999999986 778888777765 333445799999988776531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=|.++..++++.++.+.+++..+|...+.
T Consensus 460 --------------lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~ 490 (715)
T PRK11730 460 --------------LVEVIRGEKTSDETIATVVAYASKMGKTPIV 490 (715)
T ss_pred --------------eEEeeCCCCCCHHHHHHHHHHHHHhCCceEE
Confidence 1225678899999999999999999976553
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.8e-08 Score=87.79 Aligned_cols=94 Identities=24% Similarity=0.307 Sum_probs=68.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| |++.|+|+|.+|..+|+.|+.. |.+|++....+-+ .-+|...|+. ..+++|+++++|++|.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~DPi~-alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEIDPIR-ALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SSHHH-HHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECChHH-HHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 56789 9999999999999999999999 9999888765433 3467778998 45899999999999999
Q ss_pred cCCchHHHHH-HHHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl-~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|-...+ + .+.+..||+|++|..++.+.
T Consensus 86 TG~~~v---i~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDV---ITGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSS---B-HHHHHHS-TTEEEEESSSST
T ss_pred CCCccc---cCHHHHHHhcCCeEEeccCcCc
Confidence 887543 3 36677899999999988874
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-07 Score=98.65 Aligned_cols=157 Identities=9% Similarity=0.068 Sum_probs=114.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (317)
..+++|+|||.|.||..+|..+... |++|++.+...+ ..+. ..+.|...+. ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3558999999999999999999999 999877765432 2221 1222211000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..++ +.+++||+||=++|.+-.. +++.++-+.++++++|. .+++..+..+.. .+...-+|++.|+-.|.+.++
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 4579999999999988765 49999999999999986 677877777765 333345799999977776531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.++..++++.++.+.+++..+|...+.
T Consensus 460 --------------lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 490 (714)
T TIGR02437 460 --------------LVEVIRGEKSSDETIATVVAYASKMGKTPIV 490 (714)
T ss_pred --------------eEeecCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 1125578899999999999999999976554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-07 Score=97.87 Aligned_cols=156 Identities=12% Similarity=0.124 Sum_probs=112.4
Q ss_pred CCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceecC---------CC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~---------~~ 168 (317)
.+++|+|||.|.||..+|..+. .. |++|++.+... +..+.+ .+.|..... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINP-QGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4579999999999999999886 57 99988766543 222221 222211000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
.+++ +.+++||+||=++|.+... +++.++-+.++++++|. -+++..+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2345 5689999999999988765 48999999999999986 677888877765 333345899999977766531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.++++.+|...+.
T Consensus 452 --------------lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~ 482 (699)
T TIGR02440 452 --------------LVEVIPHAGTSEQTIATTVALAKKQGKTPIV 482 (699)
T ss_pred --------------eEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 1225678889999999999999999976554
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.1e-07 Score=99.16 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=113.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceec--------C-CCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTL 169 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------~-~~~ 169 (317)
.|++|+|||.|.||..+|..+... |++|++.+...+ ..+ ...+.|...+ . ...
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 406 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT 406 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe
Confidence 458999999999999999999999 999877665432 222 1222221100 0 012
Q ss_pred CCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
.++ +.+++||+||=++|.+... +++.++-+.++++++|. -+++..+..+.. .+...-+|++.|+-.|.+.++
T Consensus 407 ~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~- 481 (737)
T TIGR02441 407 LDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ- 481 (737)
T ss_pred CCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc-
Confidence 355 4679999999999988765 48999999999999986 677888877765 333345799999987776631
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.+...++++.++.+.+++..+|...+.
T Consensus 482 -------------LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~ 512 (737)
T TIGR02441 482 -------------LLEIITHDGTSKDTLASAVAVGLKQGKVVIV 512 (737)
T ss_pred -------------eEEEeCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 1225678899999999999999999976553
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=89.39 Aligned_cols=96 Identities=22% Similarity=0.293 Sum_probs=69.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--Cce------ecC--CCcCCHHhhc-CcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EEN--GTLGDIYETI-SGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~------~~~--~~~~~~~e~v-~~AD 180 (317)
|+|+|||.|.||.++|..|.+. |++|.++.|+. +..+.-.+. +.. ..+ ....+.++.+ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~-~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNH-TTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCH-HHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999999 99987776643 222222221 110 000 0124566666 5899
Q ss_pred EEEEccCCchHHHHHHHHHh-cCCCCc-EEEEecCc
Q 021114 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGF 214 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~-~lk~ga-iVi~~~Gv 214 (317)
+||+++|+....++++++.+ ++++++ +|+...|+
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 99999999999999999998 888776 45577887
|
|
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-07 Score=86.83 Aligned_cols=146 Identities=22% Similarity=0.209 Sum_probs=107.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh---cCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~---v~~ADvVILavP~ 188 (317)
|+||.||+|.||..+.++|.+. |+++ ++++.++.+.+.+...|... ..+++|. +...-+|-|++|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdv-V~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDV-VGYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeE-EEEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 9986 56677777888888899764 4566665 4567899999999
Q ss_pred chHH-HHHHHHHhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 189 AAQA-DNYEKIFSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 189 ~~~~-~vl~ei~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..++ ++++++.++|.+|.+|||-+-.. +...+ ....++++|+-+=-.+=.. |.-..+.+
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~---~l~~kgi~flD~GTSGG~~-------------G~~~G~~l 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAK---LLAEKGIHFLDVGTSGGVW-------------GAERGYCL 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHH---HHHhcCCeEEeccCCCCch-------------hhhcCceE
Confidence 8665 59999999999999999977542 22222 1335688998654433111 11122445
Q ss_pred EeccCCCHHHHHHHHHHHHHcCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~ 286 (317)
.+.. ++++++.++-+|.++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 5666 47999999999998753
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-08 Score=98.16 Aligned_cols=93 Identities=23% Similarity=0.267 Sum_probs=74.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| ++++|||+|.||..+|+.|+.+ |++|++..+...+ ...+...|+. ..+++++++++|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 47899 9999999999999999999999 9998776554332 3345556776 35789999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+. ...+++ +.+..||+|++|+.++-+
T Consensus 317 tG---t~~iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 317 TG---NKDIITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred CC---cccccCHHHHhccCCCcEEEEcCCC
Confidence 74 234775 789999999999977654
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.2e-07 Score=96.45 Aligned_cols=156 Identities=12% Similarity=0.134 Sum_probs=113.6
Q ss_pred CCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHHH-----------HHHCCceecC---------CC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~~---------~~ 168 (317)
.+++|+|||.|.||..+|..+. .. |++|++.+.+. +..+. ..+.|...+. ..
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~-~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 380 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINP-QGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG 380 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCH-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE
Confidence 4589999999999999999987 77 99987766542 22222 1222221000 01
Q ss_pred cCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhH
Q 021114 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVR 245 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r 245 (317)
..+. +.+++||+||=++|.+... +++.++-++++|+++|. .+++..+..+.+ .+...-+|++.|+-.|.+.++
T Consensus 381 ~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~~ 456 (708)
T PRK11154 381 TTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKMP 456 (708)
T ss_pred eCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccCc
Confidence 2344 5679999999999988764 48999999999999986 677888877765 333345899999977766531
Q ss_pred HHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 246 ~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=|.++..++++.++.+.+++..+|...+.
T Consensus 457 --------------lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~ 487 (708)
T PRK11154 457 --------------LVEVIPHAKTSAETIATTVALAKKQGKTPIV 487 (708)
T ss_pred --------------eEEEECCCCCCHHHHHHHHHHHHHcCCceEE
Confidence 1226688899999999999999999976554
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-07 Score=84.57 Aligned_cols=169 Identities=20% Similarity=0.190 Sum_probs=106.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--CCC-------cCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~-------~~~~~e~v~~ADvV 182 (317)
++|+|||.|.||..+|..|.+. |++|++..|.. .+...+.|.... ++. ..+..+.+..+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 99988887753 233344554321 010 11222346789999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCccEEE------eccCCCChhhHHHHhhcccc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l-~~~~~~~~~l~~~i~vV~------vhPn~pg~~~r~lf~~G~e~ 254 (317)
|+++|..+..++++.+.+.++++.+|+ ..-|+.. ..+.. .+|+. +++. .....|+... .
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---------~ 143 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---------H 143 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---------E
Confidence 999999888888889988888877665 5667743 33443 44543 3332 3333443321 1
Q ss_pred cCCCceEEEEeccCCC-----HHHHHHHHHHHHHcCCCcEEecCchhhhhccch
Q 021114 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSPFTFATTLEQEYKSDIF 303 (317)
Q Consensus 255 ~g~G~~~iitp~~d~~-----~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~ 303 (317)
.|.|... |.+....+ .+..+.+.++++..|....+...++...-..|+
T Consensus 144 ~~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~ 196 (313)
T PRK06249 144 LAYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLV 196 (313)
T ss_pred CCCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhh
Confidence 2234433 44433322 456667778899999776665555555444443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.5e-07 Score=89.42 Aligned_cols=94 Identities=16% Similarity=0.223 Sum_probs=63.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--c----------CCCcCCHHhhcCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E----------NGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~----------~~~~~~~~e~v~~A 179 (317)
++|||||+|.||..+|.+|.+ |++|+ +++.++...+... .|... | ....++..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~-g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVV-GFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEE-EEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 899999999999999999654 67775 4554444444333 44320 0 00123444578999
Q ss_pred CEEEEccCCch------H-HHHH---HHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAA------Q-ADNY---EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~------~-~~vl---~ei~~~lk~gaiVi~~~Gv 214 (317)
|++|+|+|... . ..++ +.+.+++++|++|++.+-+
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv 122 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTV 122 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 99999999652 1 2333 4788999999999987654
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=98.57 E-value=1e-06 Score=88.30 Aligned_cols=93 Identities=23% Similarity=0.247 Sum_probs=74.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| ++++|+|+|.||..+++.++.. |.+|++.++ ++...+.|.+.|+.. .+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~-d~~R~~~A~~~G~~~-----~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEV-DPICALQAAMEGYEV-----MTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC-ChhhHHHHHhcCCEE-----ccHHHHHcCCCEEEEC
Confidence 35789 9999999999999999999999 998877544 444567888899863 4677889999999998
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+.. ..+++ +.+..||+|.+|+.++.+
T Consensus 265 tG~---~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGN---KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCC---HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 764 34565 568899999999877643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.1e-07 Score=90.97 Aligned_cols=139 Identities=15% Similarity=0.083 Sum_probs=95.5
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCc---CCEEEEccCCchHHH-
Q 021114 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQAD- 193 (317)
Q Consensus 122 mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~---ADvVILavP~~~~~~- 193 (317)
||.+||++|.+. |++|.+++|+.++..+..... |++. ..+++|+++. +|+|++++|+...++
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999988887755443333222 3553 5689998874 899999999988765
Q ss_pred HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 194 vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
+++++++.|.+|.+|+|.+-... ..... ..-.++++||..-=.+ +.. .=+ .|. + |.+..+
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvdapVSG-G~~---gA~-------~G~-s-iM~GG~-- 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIGMGVSG-GEE---GAL-------HGP-S-IMPGGQ-- 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEecCCCC-CHH---HHh-------cCC-E-EEEeCC--
Confidence 88999999999999999874421 11111 1213467776532222 111 011 233 4 557765
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021114 271 GRATNVALGWSVALGSP 287 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~ 287 (317)
+++.+.++-+++.+|.+
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999965
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.54 E-value=6.9e-07 Score=86.83 Aligned_cols=164 Identities=20% Similarity=0.291 Sum_probs=104.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--------Cceec--CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE--NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~--~~~~~~~~e~v~~ADv 181 (317)
++|+|||.|+-|.++|+-|.+. |++|.+|.|+.+ ..+.-.+. |+... -....|+++++++||+
T Consensus 2 ~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~-~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~ 74 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEE-IVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADI 74 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHH-HHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCE
Confidence 7899999999999999999999 999888877532 11111110 11110 0125689999999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch------h-hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhccc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL------L-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~------l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e 253 (317)
|++++|.+...++++++.+++++++.++ .+.|+. + +.+++ .+|.+.-++-.=||-..- . .
T Consensus 75 iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLSGPs~A~E----V-a---- 142 (329)
T COG0240 75 IVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLSGPSFAKE----V-A---- 142 (329)
T ss_pred EEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEECccHHHH----H-h----
Confidence 9999999999999999988898888776 566762 2 23333 455444444555644222 2 2
Q ss_pred ccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhh
Q 021114 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGER 306 (317)
Q Consensus 254 ~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~ 306 (317)
+|.++-++.... +.+..+.++.+|.. +++ +--+..|+.|-+
T Consensus 143 ---~g~pta~~vas~-d~~~a~~v~~~f~~---~~F-----rvy~~~Dv~Gve 183 (329)
T COG0240 143 ---QGLPTAVVVASN-DQEAAEKVQALFSS---PYF-----RVYTSTDVIGVE 183 (329)
T ss_pred ---cCCCcEEEEecC-CHHHHHHHHHHhCC---CcE-----EEEecCchhhhH
Confidence 346776666654 34555555555544 322 111356777655
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=86.77 Aligned_cols=95 Identities=22% Similarity=0.350 Sum_probs=74.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| ++++|||+|.+|..+++.|+.. |.+|++.+++.. ..+.+...|+.. ....++.+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~--~~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSP--FHLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCee--ecHHHHHHHhCCCCEEEEC
Confidence 56789 9999999999999999999998 998877776643 355666777653 1134677889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|... +-++.+..|+++.+|+|.+.
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEcc
Confidence 98632 22467788999999998764
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-07 Score=88.47 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=62.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |+|+|||.| .||.+||..|.+. |+.|+++.++. .++.+++++||+||+
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 47899 999999996 9999999999999 99988775542 267889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... ++. .+|+|++|+|++
T Consensus 209 avg~~~~v---~~~--~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRLI---DAD--WLKPGAVVIDVG 231 (301)
T ss_pred ecCChhcc---cHh--hccCCcEEEEec
Confidence 99986542 211 289999999985
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.7e-07 Score=88.60 Aligned_cols=92 Identities=23% Similarity=0.235 Sum_probs=74.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.++| ++++|||+|.+|..+|+.++.. |.+|++..+... ....+...|+. ..+++|+++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~-r~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPI-RALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChh-hHHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4789 9999999999999999999999 999877655433 34566677886 346788999999999887
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
.. ..+++ +.+..||+|++++.++.+
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCC
Confidence 64 45676 588999999999977654
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-07 Score=87.27 Aligned_cols=98 Identities=19% Similarity=0.299 Sum_probs=72.0
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCC--------ceEEEEecCC---cccHHHHHH---------CCceecC--CCcC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG---SRSFAEARA---------AGFTEEN--GTLG 170 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G--------~~Vivg~r~~---~~s~~~A~~---------~G~~~~~--~~~~ 170 (317)
||+|||.|+.|.++|..|.+. | ++|.+|.|.. .+....... .|+...+ ....
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 589999999999999999987 6 8888887632 111111111 1221000 0135
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh
Q 021114 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL 216 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l 216 (317)
|+++++++||+|++++|++.+.++++++.++++++++++ .+.|+..
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~ 121 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEV 121 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCccc
Confidence 889999999999999999999999999999999887654 7778743
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.4e-07 Score=88.40 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred CEEEEEeccchHHHHHHHHHhh-hhhhcCCceEEEEecCCcc---cHHHHHH-C--------Cceec-C-CCcCCHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSR---SFAEARA-A--------GFTEE-N-GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~-~~~~~~G~~Vivg~r~~~~---s~~~A~~-~--------G~~~~-~-~~~~~~~e~v 176 (317)
++|+|||.|++|.++|..|.+. .+.-.+|++|.+|.|+..- ....... . |+... + ....|+++++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 7999999999999999999987 0000112688877766421 1111111 1 11100 0 0145788999
Q ss_pred CcCCEEEEccCCchHHHHHHHHHh--cCCCCcEEE-EecCch
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFS--CMKPNSILG-LSHGFL 215 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~--~lk~gaiVi-~~~Gv~ 215 (317)
++||+|++++|++...++++++.+ +++++++++ .+.|+.
T Consensus 92 ~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe 133 (365)
T PTZ00345 92 EDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGII 133 (365)
T ss_pred hcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcc
Confidence 999999999999999999999988 888776554 788874
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.2e-06 Score=83.98 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=63.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----------------CCceecCCCcCCHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~~~~~~~~~e~ 175 (317)
|+|+|||+|.||..+|..+ +. |++|+..+ .+++..+...+ .+... ....+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~l-A~------G~~VigvD-~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l--~~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLI-AQ------NHEVVALD-ILPSRVAMLNDRISPIVDKEIQQFLQSDKIHF--NATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHH-Hh------CCcEEEEE-CCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcE--EEecchhhh
Confidence 5899999999999999655 46 88876554 44443443332 11110 012346788
Q ss_pred cCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 176 v~~ADvVILavP~~-----------~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+++||+||+++|.. ...++++++.. +++|++|++.+-+.
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~ 120 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVP 120 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecC
Confidence 89999999999965 22346677877 69999998776553
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=88.56 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.+.| ++++|||+|.+|..+|+.|+.. |.+|++.++...+ ...+...|+. ..+++++++++|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 4789 9999999999999999999999 9998777655433 3455556776 347889999999999987
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~ 215 (317)
.. ..+++ +.+..||+|++++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 34676 7889999999999877653
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.2e-06 Score=88.96 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=72.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.+.| ++++|||+|.+|..+|+.++.. |++|++..+... ....+...|+.. .+++++++++|+||.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~dp~-r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEIDPI-CALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCch-hhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 4789 9999999999999999999998 998877655432 234667778863 47889999999999866
Q ss_pred CCchHHHHH-HHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl-~ei~~~lk~gaiVi~~~Gv 214 (317)
... .++ .+.++.||+|++|+.++.+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 543 344 5788899999999977653
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=84.19 Aligned_cols=148 Identities=18% Similarity=0.167 Sum_probs=104.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC----ceecCCCcCCHHh---hcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYE---TISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e---~v~~ADvVIL 184 (317)
..||+||+|.||..+|+|+.+. |+.|.+++|..++..+.-.+.+ ++. ..+++| .++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 5799999999999999999999 9999999998776655444443 222 345665 4677889999
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++.-... ..++++++|+|.+|.+|||-+-. ++...++ .-.+++.||+.==.+ |.|.-=.|
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-----------GEeGA~~G- 138 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-----------GEEGARHG- 138 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-----------cccccccC-
Confidence 9988543 45899999999999999998753 2333332 335688999743322 11000011
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+. |.|..+ +++.+.++-+++++-++
T Consensus 139 PS-iMpGG~--~eay~~v~pil~~IaAk 163 (473)
T COG0362 139 PS-IMPGGQ--KEAYELVAPILTKIAAK 163 (473)
T ss_pred CC-cCCCCC--HHHHHHHHHHHHHHHhh
Confidence 23 445554 78999999999988654
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.8e-06 Score=83.28 Aligned_cols=170 Identities=15% Similarity=0.089 Sum_probs=95.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--c-----------C---CCcCCHHh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--E-----------N---GTLGDIYE 174 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~-----------~---~~~~~~~e 174 (317)
+|+|+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.. +.|... + . ...++..+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l-~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~ 74 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAW-NSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEK 74 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHH-HcCCCccCCCCHHHHHHHhhcCCEEEEcCHHH
Confidence 48999999999999999999876 2246665 444443333221 111100 0 0 01346778
Q ss_pred hcCcCCEEEEccC--Cc-------------hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCcc-EEEe
Q 021114 175 TISGSDLVLLLIS--DA-------------AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIG-VIAV 235 (317)
Q Consensus 175 ~v~~ADvVILavP--~~-------------~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~-vV~v 235 (317)
++++||++|+|+| .. .+..+.+++.++++++++|+.-+-+.. ..+......-.++.+ .|..
T Consensus 75 ~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~ 154 (473)
T PLN02353 75 HVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILS 154 (473)
T ss_pred HHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEE
Confidence 8999999999986 21 223456689999999999875543311 111110000011233 3566
Q ss_pred cc--CCCChhhHHHHhhcccccCCCceEEE-EeccC-CCHHHHHHHHHHHHHcC-CCcEEecCch
Q 021114 236 CP--KGMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALG-SPFTFATTLE 295 (317)
Q Consensus 236 hP--n~pg~~~r~lf~~G~e~~g~G~~~ii-tp~~d-~~~ea~e~a~~l~~alG-~~~~~~tT~~ 295 (317)
.| ..+|..+++++. .+-++ ...++ ..+++.+.++++...+- ...+..|+++
T Consensus 155 ~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~ 210 (473)
T PLN02353 155 NPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLW 210 (473)
T ss_pred CCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHH
Confidence 66 234444433332 34433 22222 22567888888888774 2456666665
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.4e-06 Score=76.61 Aligned_cols=95 Identities=22% Similarity=0.312 Sum_probs=60.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--cC---------------CCcCCHHh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--EN---------------GTLGDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~---------------~~~~~~~e 174 (317)
|||+|||+|-+|..+|..|.+. |++|+ |.+.+++..+. ...|... |. ....+.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~-l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEA-LNNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHH-HHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHH-Hhhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99874 66655432222 2223110 00 01357788
Q ss_pred hcCcCCEEEEccCCch----------HHHHHHHHHhcCCCCcEEEEecCc
Q 021114 175 TISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 175 ~v~~ADvVILavP~~~----------~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++++|++++|+|... ..+.++++.++++++++|++-+-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv 122 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV 122 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence 8999999999997331 334667899999999998876644
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3e-06 Score=80.21 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=62.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|||||+|.||..++++|.+.. .++++....+++. +..+.+.+.|... ...+++++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 1666654444433 3333444555321 24689999999999999999998
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecC
Q 021114 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (317)
Q Consensus 191 ~~~vl~ei~~~lk~ga-iVi~~~G 213 (317)
+.++..+.+. .|+ +++.+.|
T Consensus 80 h~e~~~~aL~---aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVLA---AGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHHH---cCCcEEEecch
Confidence 8777766543 454 4444434
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.5e-06 Score=79.31 Aligned_cols=82 Identities=17% Similarity=0.179 Sum_probs=58.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
+++|||||+|.||..+++.+.+. +.+++++...+++.+..+. +...|... +.+++|++.++|+|++++|+.
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47899999999999999999875 1135554445554433332 33344432 568899889999999999998
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
.+.++..+.+.
T Consensus 73 ~~~~~~~~al~ 83 (265)
T PRK13304 73 AVEEVVPKSLE 83 (265)
T ss_pred HHHHHHHHHHH
Confidence 88877776654
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=82.98 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=62.0
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| |+|+||| .|.||.+||.+|.+. |+.|+++..+. .+++|++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 7899 9999999 999999999999999 99988774321 1467889999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.... +++. .+++|++|+|++-
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvGi 231 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVGI 231 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcCC
Confidence 998663 3322 2899999999864
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.7e-05 Score=76.50 Aligned_cols=173 Identities=16% Similarity=0.192 Sum_probs=109.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC--------cCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~--------~~~~~e~v~~ADvVI 183 (317)
|||.|+|.|.||+-++..|.+. |.+|.+..|.. . .+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~~-~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRSR-R-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecHH-H-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 86676666653 2 455566676442111 112235566899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEeccC-----CCChhhHHHHhhcccccC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVCPK-----GMGPSVRRLYVQGKEING 256 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn-----~pg~~~r~lf~~G~e~~g 256 (317)
++++-.+..+.++.+.+.+++++.|+ .--|.. .+.+.. .++...-+.++.+- +|+... ..|
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~~il~G~~~~~a~~~~~g~v~---------~~g 140 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKETVLGGVTTHGAVREGPGHVV---------HTG 140 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcceEEEEEeeeeeEecCCceEE---------Eec
Confidence 99999999999999999999998665 667775 333443 55554223334442 233221 122
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhh
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGE 305 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e 305 (317)
.|... +........+..+.+.+.++..|....+...+....-..|+..
T Consensus 141 ~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N 188 (307)
T COG1893 141 LGDTV-IGELRGGRDELVKALAELFKEAGLEVELHPDILAAIWRKLVVN 188 (307)
T ss_pred CCcEE-EccCCCCchHHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhh
Confidence 34444 3333333335666666777888876666555555555555444
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.9e-06 Score=80.00 Aligned_cols=97 Identities=19% Similarity=0.213 Sum_probs=69.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+.| ++|+|||.|.||..+++.|+.. | .+|++.+|..++..+.+.+.|.... ...+..+.+.++|+||.+
T Consensus 175 ~l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 175 NLKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISA 245 (311)
T ss_pred CccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEEC
Confidence 3789 9999999999999999999986 6 4677777665555566677665320 123567888999999999
Q ss_pred cCCchHHHHHHHHHhcC-CCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCM-KPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~l-k~gaiVi~~~ 212 (317)
+|.....+++.+..... +++.+++|.+
T Consensus 246 t~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 246 TGAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 99877644555444332 3566777765
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.8e-05 Score=75.82 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=93.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceec-CCCc------CCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE-NGTL------GDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~-~~~~------~~~~e~v~~ADvVI 183 (317)
|+|+|||.|.||+-+|-.|.+. |.+|.+..|..+ ..+.-++ .|+... ++.. ....+.....|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 998887777532 2332322 344321 1110 01112245789999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhhcccCCCCCc-----cEEEeccCCCChhhHHHHhhcccccC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQSIGLDFPKNI-----GVIAVCPKGMGPSVRRLYVQGKEING 256 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l-~~~~~~~~~l~~~i-----~vV~vhPn~pg~~~r~lf~~G~e~~g 256 (317)
++++-.+..+.++++.+++.+++.|+ .--|+.. ..+.. .+|++. .+++.+...|+... ..|
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v~---------~~~ 143 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRVV---------FAG 143 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEEE---------Eec
Confidence 99999988889999999998888765 6778753 33443 445431 12234444554431 112
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.|. ..|.+..+ +..+...+++...|....+
T Consensus 144 ~g~-~~~G~~~~---~~~~~l~~~l~~ag~~~~~ 173 (305)
T PRK05708 144 HGF-TWLGDPRN---PTAPAWLDDLREAGIPHEW 173 (305)
T ss_pred eEE-EEEcCCCC---cchHHHHHHHHhcCCCCcc
Confidence 222 22443222 3345556677777754444
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.6e-06 Score=67.92 Aligned_cols=95 Identities=12% Similarity=0.047 Sum_probs=60.1
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCC-ce---ecCCCcCCHHhhcCcCCEEEEcc
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAG-FT---EENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G-~~---~~~~~~~~~~e~v~~ADvVILav 186 (317)
||+||| .|.+|..++..|.+. .++++.....++. .....+...+ +. ..+....+.+ ..++|+|++++
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~ 73 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLAL 73 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcC
Confidence 589999 599999999999884 0555433322211 1111111221 11 0000011222 25899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+..+.+++..+...+++|++|+|++|.
T Consensus 74 ~~~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 74 PHGVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred CcHHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 9999988877666778999999999986
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.8e-06 Score=79.72 Aligned_cols=76 Identities=20% Similarity=0.233 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |+|+|||. |.||.+||..|.+. |+.|+++..+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTHSR-------------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 99999999 99999999999999 9988776211 1267889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... +. .++++|++|+|++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99986652 21 1389999999985
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.4e-05 Score=72.22 Aligned_cols=145 Identities=12% Similarity=0.054 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhhhhhhcCCceEEEEecCCcc------cH-----------HHHHHCCceecC---------CCcC--CHH
Q 021114 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR------SF-----------AEARAAGFTEEN---------GTLG--DIY 173 (317)
Q Consensus 122 mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~------s~-----------~~A~~~G~~~~~---------~~~~--~~~ 173 (317)
||..+|..+... |++|++.+...+. .. +.+.+.|...+. .... +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999887765421 11 122233322100 0011 366
Q ss_pred hhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhh
Q 021114 174 ETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~ 250 (317)
+++++||+||-++|.+...+ ++.++.+.++++++|. -+++..+..+.. .+...-++++.|+-.|.+.++
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 88999999999999988754 7889999999999986 556666666654 333335799999977665531
Q ss_pred cccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 251 G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
-.=+.+...++++.++.+..++..+|...+
T Consensus 147 ---------lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v 176 (314)
T PRK08269 147 ---------LVEVSPSDATDPAVVDRLAALLERIGKVPV 176 (314)
T ss_pred ---------eEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence 122456778899999999999999996654
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.1e-05 Score=63.92 Aligned_cols=82 Identities=22% Similarity=0.268 Sum_probs=62.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.+|......++.. ..+.+++...+++.+..+ .+.+.|+.. +.+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~----~~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRS----SPDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 3799999999999999888876 114565544555544333 456678774 779999987 79999999999
Q ss_pred chHHHHHHHHHhc
Q 021114 189 AAQADNYEKIFSC 201 (317)
Q Consensus 189 ~~~~~vl~ei~~~ 201 (317)
..+.+++.+.+..
T Consensus 73 ~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 73 SSHAEIAKKALEA 85 (120)
T ss_dssp GGHHHHHHHHHHT
T ss_pred cchHHHHHHHHHc
Confidence 9998888776554
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=66.75 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=72.2
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC----------cCCHHhhcCcCCEEE
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----------~~~~~e~v~~ADvVI 183 (317)
|.|+|.|.||.-+|..|.+. |++|.+..|.. ..+.-.+.|+...+.. ..+..+.....|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777664 3444555666432111 111224577899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhh
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQS 221 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~ 221 (317)
++++-.+..++++.+.+++++++.|+ .--|+. ...+++
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~l~~ 112 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMGNEEVLAE 112 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSSHHHHHHC
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCCcHHHHHH
Confidence 99999999999999999998886554 667875 344443
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=73.35 Aligned_cols=72 Identities=22% Similarity=0.207 Sum_probs=51.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcC-cCCEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETIS-GSDLV 182 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v~-~ADvV 182 (317)
..+++| |+|+|+|+|+||..+|+.|.+. |++|++.+++ .+..+.. ...|... .+.+++.. ++|++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~-~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~ 89 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADIN-EEAVARAAELFGATV-----VAPEEIYSVDADVF 89 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHHcCCEE-----EcchhhccccCCEE
Confidence 467899 9999999999999999999999 9998755544 3333333 3335442 24455554 89999
Q ss_pred EEccCCc
Q 021114 183 LLLISDA 189 (317)
Q Consensus 183 ILavP~~ 189 (317)
+.+..-.
T Consensus 90 vp~A~~~ 96 (200)
T cd01075 90 APCALGG 96 (200)
T ss_pred Eeccccc
Confidence 9666543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.9e-06 Score=70.10 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~v~~ADv 181 (317)
.+++| +++.|||.|-+|.+++..|.+. |.+ +.+.+|+.++..+.+...+ +.. ....+..+.+.++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 57889 9999999999999999999999 885 8888887655555555542 111 124567778899999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
||.++|.... .+-++.++...+. .+++|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999997654 1112333333222 3788874
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00011 Score=73.20 Aligned_cols=159 Identities=20% Similarity=0.254 Sum_probs=92.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-------------------HHHHHHCCceecCCCcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAGFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-------------------~~~A~~~G~~~~~~~~~~~ 172 (317)
.+|||||+|-+|.++|..+... |++| +|.|-+++. .+.+.+.|.-. ..++.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lr---aTtd~ 79 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLR---ATTDP 79 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCce---EecCh
Confidence 7899999999999999999999 9987 465543321 33455566332 13455
Q ss_pred HhhcCcCCEEEEccCCch----HHH------HHHHHHhcCCCCcEEEEec----Cch---hhhhhh--cccCCCCCccEE
Q 021114 173 YETISGSDLVLLLISDAA----QAD------NYEKIFSCMKPNSILGLSH----GFL---LGHLQS--IGLDFPKNIGVI 233 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~----~~~------vl~ei~~~lk~gaiVi~~~----Gv~---l~~~~~--~~~~l~~~i~vV 233 (317)
++ ++.||++++|+|..- +.+ ..+.|.+.|++|.+|++=+ |.+ ...+.+ .++.+++++. +
T Consensus 80 ~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~-l 157 (436)
T COG0677 80 EE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFY-L 157 (436)
T ss_pred hh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceee-E
Confidence 54 559999999987431 111 2346999999999988543 432 112222 4556654432 3
Q ss_pred Eecc--CCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
..+| -.||...+++-. .+=+ -...+++..+.+.+|-+.+=...++.++.
T Consensus 158 aysPERv~PG~~~~el~~---------~~kV---IgG~tp~~~e~a~~lY~~iv~~~~~vts~ 208 (436)
T COG0677 158 AYSPERVLPGNVLKELVN---------NPKV---IGGVTPKCAELAAALYKTIVEGVIPVTSA 208 (436)
T ss_pred eeCccccCCCchhhhhhc---------CCce---eecCCHHHHHHHHHHHHHheEEEEEcCCh
Confidence 3333 122433322221 1221 12345667777777776665554444444
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.8e-05 Score=70.71 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=99.6
Q ss_pred HHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHHH
Q 021114 123 GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYEK 197 (317)
Q Consensus 123 G~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~e 197 (317)
|..||-.+... |++|+....+ +.+.++.-...|+.. .+|..++++.+++.+|-+|-...+ .+.++
T Consensus 33 Ga~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v----v~dD~eaa~~~Ei~VLFTPFGk~T~~Iare 102 (340)
T COG4007 33 GARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV----VSDDAEAAEHGEIHVLFTPFGKATFGIARE 102 (340)
T ss_pred chHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE----ecCchhhhhcceEEEEecccchhhHHHHHH
Confidence 66777777777 9998887543 234577888899885 567778999999999999998554 67889
Q ss_pred HHhcCCCCcEEEEecCch---h-hhhhhcccCC-CCCccEEEeccCC-CChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 198 IFSCMKPNSILGLSHGFL---L-GHLQSIGLDF-PKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 198 i~~~lk~gaiVi~~~Gv~---l-~~~~~~~~~l-~~~i~vV~vhPn~-pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
|.+++..|++|.-.+-++ + ..++ ..+.. ++++.+-..||-+ ||+...+.|.-+ |.+. .-.+-.++
T Consensus 103 i~~hvpEgAVicnTCT~sp~vLy~~LE-~~Lr~kR~dVGvssmHPAgvPGtp~h~~yvia------gr~t--~g~elATe 173 (340)
T COG4007 103 ILEHVPEGAVICNTCTVSPVVLYYSLE-GELRTKREDVGVSSMHPAGVPGTPQHGHYVIA------GRST--EGKELATE 173 (340)
T ss_pred HHhhCcCCcEecccccCchhHHHHHhh-hhhcCchhhcCccccCCCCCCCCCCCceEEEe------ccCC--CceeeccH
Confidence 999999999998555432 2 2222 22232 3567777888843 555533333322 1110 01224678
Q ss_pred HHHHHHHHHHHHcCCC
Q 021114 272 RATNVALGWSVALGSP 287 (317)
Q Consensus 272 ea~e~a~~l~~alG~~ 287 (317)
+.+++..+++++.|..
T Consensus 174 EQi~r~velaes~Gk~ 189 (340)
T COG4007 174 EQIERCVELAESTGKE 189 (340)
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999999953
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.9e-05 Score=78.99 Aligned_cols=98 Identities=19% Similarity=0.196 Sum_probs=66.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+.| ++|+|||.|.||..+++.|+.. |. +|++.++..++..+.+.+.|... ....+..+.+.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~--~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEA--IPLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcE--eeHHHHHHHhccCCEEEEC
Confidence 4788 9999999999999999999988 87 67777776554445666655321 0124566788999999999
Q ss_pred cCCchH---HHHHHHHHh-cCCCCcEEEEecC
Q 021114 186 ISDAAQ---ADNYEKIFS-CMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~---~~vl~ei~~-~lk~gaiVi~~~G 213 (317)
++.... .+.++.... .-..+.+++|.+-
T Consensus 250 T~s~~~~i~~~~l~~~~~~~~~~~~vviDla~ 281 (423)
T PRK00045 250 TGAPHPIIGKGMVERALKARRHRPLLLVDLAV 281 (423)
T ss_pred CCCCCcEEcHHHHHHHHhhccCCCeEEEEeCC
Confidence 985543 234443221 1123467778763
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.4e-05 Score=75.41 Aligned_cols=87 Identities=18% Similarity=0.161 Sum_probs=60.6
Q ss_pred CEEEEEeccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCcccHHHHHHC---C--ceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
++|+|||+|.||..+++.+.. . + .+|.+++|..++..+.+.+. | +.. ..+.++++++||+|+.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~------~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~ 195 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR------PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISC 195 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC------CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEE
Confidence 899999999999999987765 3 4 46878887655444444432 4 332 4688899999999998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++|.. ..++.. +.+++|++|..++
T Consensus 196 aT~s~--~pvl~~--~~l~~g~~i~~ig 219 (314)
T PRK06141 196 ATLST--EPLVRG--EWLKPGTHLDLVG 219 (314)
T ss_pred eeCCC--CCEecH--HHcCCCCEEEeeC
Confidence 88865 233432 4578998544333
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=2.9e-05 Score=76.44 Aligned_cols=93 Identities=25% Similarity=0.295 Sum_probs=77.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.-++| |++.|.|+|-.|..+|+.|+.. |.+|++..-.+-+.+ +|.-.||. +..++|+++.+|++|.+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~Al-eA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIRAL-EAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchHHH-HHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 45788 9999999999999999999998 999988876654444 56678998 46899999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+-... ++. +.+..||+|++|..++-|
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHF 298 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHF 298 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEeccccc
Confidence 88744 454 777889999999887766
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=6.6e-05 Score=75.17 Aligned_cols=98 Identities=16% Similarity=0.153 Sum_probs=66.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..++| ++|+|||.|.||..+++.|+.. | .+|++.+++..+..+.+.+.|... ....+..+.+.++|+||.
T Consensus 176 ~~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~--i~~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 176 GSLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEA--VKFEDLEEYLAEADIVIS 246 (417)
T ss_pred CCccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeE--eeHHHHHHHHhhCCEEEE
Confidence 35889 9999999999999999999998 8 567777776554444565555421 013467788899999999
Q ss_pred ccCCchHH---HHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQA---DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~---~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++..... +.++.....-+...+++|.+
T Consensus 247 aT~s~~~ii~~e~l~~~~~~~~~~~~viDla 277 (417)
T TIGR01035 247 STGAPHPIVSKEDVERALRERTRPLFIIDIA 277 (417)
T ss_pred CCCCCCceEcHHHHHHHHhcCCCCeEEEEeC
Confidence 99755431 23333221111234677776
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=97.83 E-value=4e-05 Score=75.69 Aligned_cols=97 Identities=15% Similarity=0.146 Sum_probs=66.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceec-C-CCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-N-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~-~~~~~~~e~v~~ADvVIL 184 (317)
+.+ .++.|||.|.+|...++.++.. |.+|++.+++.++ .+.+ ...|.... . ....++.+.++++|+||.
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~-~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~ 236 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDR-LRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIG 236 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHH-HHHHHHhcCceeEeccCCHHHHHHHHccCCEEEE
Confidence 566 8899999999999999999999 9987776655332 3333 23333110 0 001245678899999999
Q ss_pred ccCC--chHHHHH-HHHHhcCCCCcEEEEec
Q 021114 185 LISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~--~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
+++. .....++ ++....|+++.+|+|++
T Consensus 237 a~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 237 AVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred ccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 9853 2223344 46778899999999765
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.83 E-value=5e-05 Score=73.64 Aligned_cols=94 Identities=17% Similarity=0.092 Sum_probs=63.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH---HCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+++||||+|.||..+++.+.... ...+|.++++..++..+.+. +.|... ..+.+.+|++++||+|+.+||.
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT~s 202 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTTPS 202 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEecCC
Confidence 78999999999999998886641 02356666665443332222 345311 1256899999999999999986
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
.. .++. .+.+|||+.|.-++...
T Consensus 203 ~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 203 RK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CC--cEec--HHHcCCCCEEEecCCCC
Confidence 42 2332 23468999988776553
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.82 E-value=8.2e-05 Score=69.48 Aligned_cols=155 Identities=16% Similarity=0.211 Sum_probs=106.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC-------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN------------- 166 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~------------- 166 (317)
++.++|||.|.||..+|+-...+ |++|++.++. ++.+.+|.+ .+..+..
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~-~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDAN-EDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCC-HHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999998 9998776554 333333321 1221100
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 167 -GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 167 -~~~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
...++..++++++|+||=++-.+... ++++++-...|+.++++ ..+++.+..+.. .....-.|.+.|=--|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 11456778889999998776655433 36667766778888886 788887766654 333445788888877777
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.|+ |.+ +.-+.+++++.......+.+.+|...+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKttV 193 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKTTV 193 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCCce
Confidence 753 222 225668888999999999999997654
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.9e-05 Score=72.89 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|.+ |..++..|... |..|++...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 36899 99999999988 99999999988 9888664321 2377889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-.. ++.. +++|+|++|+|++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999533 4443 6789999999986
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00017 Score=67.60 Aligned_cols=160 Identities=18% Similarity=0.248 Sum_probs=88.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+|||+ |.||..+++.+.+. .+++++...+.+.+........|+.. ..+++++++++|+|+.++|+..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~~ 72 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPEA 72 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHHH
Confidence 78999998 99999999988763 15776655555433222222234432 4688998989999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCC-hhh-HHHHhhcccccCCCceEE-EEec
Q 021114 191 QADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMG-PSV-RRLYVQGKEINGAGINSS-FAVH 266 (317)
Q Consensus 191 ~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg-~~~-r~lf~~G~e~~g~G~~~i-itp~ 266 (317)
..+++...+.+ |. +|+-..|+.....+.... ..+.+.++ ..||..- ..+ ..+-+......|. ..+- +--|
T Consensus 73 ~~~~~~~al~~---G~~vvigttG~s~~~~~~l~~-aa~~~~v~-~s~n~s~g~~~~~~l~~~aa~~l~~-~d~ei~E~H 146 (257)
T PRK00048 73 TLENLEFALEH---GKPLVIGTTGFTEEQLAELEE-AAKKIPVV-IAPNFSIGVNLLMKLAEKAAKYLGD-YDIEIIEAH 146 (257)
T ss_pred HHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH-HhcCCCEE-EECcchHHHHHHHHHHHHHHHhcCC-CCEEEEEcc
Confidence 87766655443 44 343455766543332111 12344443 3343321 111 1111110001111 1222 2333
Q ss_pred c----C-CCHHHHHHHHHHHHHcCC
Q 021114 267 Q----D-VDGRATNVALGWSVALGS 286 (317)
Q Consensus 267 ~----d-~~~ea~e~a~~l~~alG~ 286 (317)
. | +++.++.+++.+.+..+.
T Consensus 147 H~~K~DaPSGTA~~l~~~i~~~~~~ 171 (257)
T PRK00048 147 HRHKVDAPSGTALKLAEAIAEARGR 171 (257)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 3 3 368899999988887763
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.2e-05 Score=65.70 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| ++|.|||.|.| |..+|+.|.+. |.+|++..|.. .++.+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 57899 99999999997 77799999998 88877766541 256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999754 3431 1357788888776
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=75.01 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=64.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCcCCEEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.|.+ ++|+|||.|.||..+++.|... |. +|++.+|+.++..+.+.+. |....-....+..+++.++|+||.
T Consensus 263 ~l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIs 335 (519)
T PLN00203 263 SHAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFT 335 (519)
T ss_pred CCCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEE
Confidence 3778 9999999999999999999988 86 5777777755544444443 221000113467788999999999
Q ss_pred ccCCchH---HHHHHHHHhcCC---CCcEEEEec
Q 021114 185 LISDAAQ---ADNYEKIFSCMK---PNSILGLSH 212 (317)
Q Consensus 185 avP~~~~---~~vl~ei~~~lk---~gaiVi~~~ 212 (317)
+|+-..- .+.++++.+.-+ ...+++|.+
T Consensus 336 AT~s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 336 STSSETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred ccCCCCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 9864332 235554432211 113566664
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00013 Score=70.13 Aligned_cols=77 Identities=14% Similarity=0.197 Sum_probs=62.4
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||.|. +|..+|+.|... |..|++..++. .++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~t-------------------~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSRS-------------------KDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCCc-------------------hhHHHHHhhCCEEEE
Confidence 47999 9999999988 999999999988 88887776431 257788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++-.. ++.. +.+|+|++|+|++-
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvGi 231 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVGN 231 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcCC
Confidence 998744 3332 24789999999875
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00016 Score=70.19 Aligned_cols=126 Identities=21% Similarity=0.179 Sum_probs=88.7
Q ss_pred cccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
++-|-++=+.+-=+|-+..|.++. |--. . .-.-+.| |...|.|+|..|..-|+.||.+ |..|++..-..-
T Consensus 179 iNVNDSVTKsKFDnLygcreSl~D-gikr-a-TDvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------g~~VivTEiDPI 248 (434)
T KOG1370|consen 179 INVNDSVTKSKFDNLYGCRESLLD-GIKR-A-TDVMIAG-KVAVVCGYGDVGKGCAQALKGF------GARVIVTEIDPI 248 (434)
T ss_pred eeccchhhhhhccccccchhhhhh-hhhh-h-hhheecc-cEEEEeccCccchhHHHHHhhc------CcEEEEeccCch
Confidence 334566666555566666665332 1000 0 1133667 8999999999999999999999 988887765544
Q ss_pred ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 152 RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 152 ~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
..+ +|.-.|+. +.+++|++++.|+++.++-...+ +..+.+..||.++||...+-+.
T Consensus 249 ~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 249 CAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 434 44456887 57999999999999998876443 3457888999999998766553
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00033 Score=66.02 Aligned_cols=81 Identities=21% Similarity=0.237 Sum_probs=52.2
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
|+||||||+|.||..+++.+.+. .++++....+......+.... .+... +.+++++-.+.|+|+.++|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999875 034443333322211111111 23332 45787775569999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 72 ~~~~e~~~~aL~ 83 (265)
T PRK13303 72 AALKEHVVPILK 83 (265)
T ss_pred HHHHHHHHHHHH
Confidence 887776665544
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00012 Score=65.10 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=63.3
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cc--eecC-CCcCCHHhhcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETIS 177 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~--~~~~-~~~~~~~e~v~ 177 (317)
.++++ +++.|+|. |.+|..+++.|.+. |.+|++..|+.++..+.+... +. ...+ ....+..++++
T Consensus 24 ~~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (194)
T cd01078 24 KDLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIK 96 (194)
T ss_pred cCCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHh
Confidence 36788 99999995 99999999999988 888877776543322222211 11 1100 00123347889
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|+||.++|..... ........+++.+++|+.-
T Consensus 97 ~~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~~ 130 (194)
T cd01078 97 GADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVNA 130 (194)
T ss_pred cCCEEEECCCCCcee--chhhhcccCceeEEEEccC
Confidence 999999999977651 1122223456778887653
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00016 Score=59.90 Aligned_cols=92 Identities=18% Similarity=0.238 Sum_probs=58.1
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEE-EecCC--cccHHHHHH--CCceecCCCc-CCHHhhcCcCCEEEEc
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTL-GDIYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~~~~~-~~~~e~v~~ADvVILa 185 (317)
||+||| .|.+|..+.+.|.+. ..++++. ..++. ...+..... .++.+ -.. ....+.+.++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-----p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-----PDFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----STEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-----CCccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1345433 33332 122222211 11211 001 1123445999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+|.....++.+++ +++|..|+|.++.
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9998888887776 4578899998874
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00013 Score=70.09 Aligned_cols=93 Identities=19% Similarity=0.139 Sum_probs=65.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.. ++++|||.|.||..+++.+... .+. ++.++.|..++..+.+.+. ++.. ...+.++++.++|+|+.
T Consensus 124 ~~-~~v~IiGaG~qa~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~---~~~~~~~av~~aDiVit 194 (304)
T PRK07340 124 PP-GDLLLIGTGVQARAHLEAFAAG-----LPVRRVWVRGRTAASAAAFCAHARALGPTA---EPLDGEAIPEAVDLVVT 194 (304)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHh-----CCCCEEEEEcCCHHHHHHHHHHHHhcCCee---EECCHHHHhhcCCEEEE
Confidence 45 8999999999999999999763 054 5777777654444444333 2221 13578899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+||... .++.. .+|||+.|.-++...
T Consensus 195 aT~s~~--Pl~~~---~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 195 ATTSRT--PVYPE---AARAGRLVVAVGAFT 220 (304)
T ss_pred ccCCCC--ceeCc---cCCCCCEEEecCCCC
Confidence 999764 34432 379999988777654
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00035 Score=70.15 Aligned_cols=97 Identities=19% Similarity=0.245 Sum_probs=71.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..|++ +++.|||.|-||.-.|+.|... |. ++++.+|.-++..+.|.+.|... -...++.+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 45899 9999999999999999999999 85 78889998888888888888442 235577788999999999
Q ss_pred ccCCc-hHH--HHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDA-AQA--DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~-~~~--~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|.-. .+. +.+++....-+. -+++|.+
T Consensus 245 sTsa~~~ii~~~~ve~a~~~r~~-~livDia 274 (414)
T COG0373 245 STSAPHPIITREMVERALKIRKR-LLIVDIA 274 (414)
T ss_pred ecCCCccccCHHHHHHHHhcccC-eEEEEec
Confidence 97633 222 244443332222 3455554
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0003 Score=68.08 Aligned_cols=92 Identities=18% Similarity=0.236 Sum_probs=63.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||+|.||..++..+... .+. +|.++.|..++..+.+. +.++.. ....+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~-----~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAV-----RDIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 8999999999999999887543 154 46666665444333332 224321 12567899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|... .++. ..+++|+.|+-+++..
T Consensus 201 ~s~~--p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAKT--PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCCC--cchH---HhcCCCcEEEecCCCC
Confidence 9662 2443 5679999998777653
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0012 Score=62.31 Aligned_cols=161 Identities=15% Similarity=0.148 Sum_probs=88.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCcccH--HHHHH-----CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSF--AEARA-----AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~--~~A~~-----~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++|+||| +|.||..+++.+.+. .+++++...+ .++... ..+.. .|+.. ..+++++...+|+|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~DvV 72 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDVL 72 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCEE
Confidence 6899999 699999999999864 1677665555 322111 11111 23332 45788876679999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCC-CccEEEeccCCCChh--hHHHHh-hcccccCC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPK-NIGVIAVCPKGMGPS--VRRLYV-QGKEINGA 257 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~~-~i~vV~vhPn~pg~~--~r~lf~-~G~e~~g~ 257 (317)
|.++|+....+++...+.+ |. +|+-..|++....+.......+ ++. +...||+.--. +..+.+ ..+...+.
T Consensus 73 IdfT~p~~~~~~~~~al~~---g~~vVigttg~~~e~~~~l~~aA~~~g~~-v~~a~NfSlGv~ll~~~~~~aa~~l~~~ 148 (266)
T TIGR00036 73 IDFTTPEGVLNHLKFALEH---GVRLVVGTTGFSEEDKQELADLAEKAGIA-AVIAPNFSIGVNLMFKLLEKAAKYLGDY 148 (266)
T ss_pred EECCChHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHhcCCcc-EEEECcccHHHHHHHHHHHHHHHhccCC
Confidence 9999998887777665543 33 4554567754333221111111 233 34445554332 111111 11111112
Q ss_pred CceEEEEecc-----CCCHHHHHHHHHHHHHcCC
Q 021114 258 GINSSFAVHQ-----DVDGRATNVALGWSVALGS 286 (317)
Q Consensus 258 G~~~iitp~~-----d~~~ea~e~a~~l~~alG~ 286 (317)
.+- |+--|. -+++.++.+++.+.+..+.
T Consensus 149 die-I~E~HH~~K~DaPSGTA~~l~~~i~~~~~~ 181 (266)
T TIGR00036 149 DIE-IIELHHRHKKDAPSGTALKTAEMIAEARGE 181 (266)
T ss_pred CEE-eeeeccCCCCCCCCHHHHHHHHHHHHhhcc
Confidence 112 233343 2378899999888877763
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00042 Score=67.63 Aligned_cols=75 Identities=11% Similarity=0.236 Sum_probs=51.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
.+|+|||+|+||..+++.+.+. .+++++...+++... ......+... ..+.++++.+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 6899999999999999999765 167765444544211 1112234332 34677788999999999998776
Q ss_pred HHHHH
Q 021114 192 ADNYE 196 (317)
Q Consensus 192 ~~vl~ 196 (317)
.+...
T Consensus 74 ~~~~~ 78 (324)
T TIGR01921 74 IPEQA 78 (324)
T ss_pred HHHHH
Confidence 55443
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0011 Score=64.90 Aligned_cols=96 Identities=21% Similarity=0.221 Sum_probs=63.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCcee-----------cCC---CcCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE-----------ENG---TLGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~-----------~~~---~~~~~~e~ 175 (317)
+.||||+|+|.||+.+++.+.+. .+++++...+.+.+... .+.+.|+.. .+. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 36899999999999999998764 16776655554332222 233333210 000 02467778
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.++|+|+.++|.....+..+... +.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~~---~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELYE---KAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHHH---HCCCEEEEcCCC
Confidence 889999999999987777666443 457788888874
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00038 Score=58.31 Aligned_cols=93 Identities=20% Similarity=0.269 Sum_probs=59.0
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++|+|+|+ |.||..+++.+.+. .++++..+.++..+.. ... ...|+.. ..++++++.++|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999983 1787766655543100 000 0223332 46899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchh
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l 216 (317)
|-.+-+....+.++....+ |. +|+=+.|+.-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999776666666655544 33 4555778753
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0012 Score=62.81 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.2
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH--CCceec--C---CCcCCHHhhcCcCCEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--N---GTLGDIYETISGSDLV 182 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--~---~~~~~~~e~v~~ADvV 182 (317)
|+||+|||.|.||..+|..+... |+ ++++.+...+.....+.+ ...... + ....+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 48999999999999999999877 65 676666543322111211 110000 0 012345 558999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00044 Score=66.24 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|. .|.+++..|.+. |..|++..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 47899 9999999997 999999999988 8887776652 1256677799999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++... .+. .+.+++|++|+|++
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996322 333 13479999999876
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00056 Score=65.66 Aligned_cols=76 Identities=17% Similarity=0.162 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||-|. .|..+|.-|... |..|++..++ ..++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8888766432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +.. +++|+|++|+|++
T Consensus 209 avG~p~~---v~~--~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IPG--EWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---ccH--HHcCCCcEEEEcc
Confidence 9954332 221 5679999999987
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00027 Score=71.02 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
..+.| ++|.|||.|-||..++.+|.+. |. ++++.+|+..+..+.+.+.+ ... ....++.+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 56889 9999999999999999999988 86 67888887665555666554 211 01345678899999999
Q ss_pred EccCCch
Q 021114 184 LLISDAA 190 (317)
Q Consensus 184 LavP~~~ 190 (317)
.||+...
T Consensus 248 ~aT~a~~ 254 (414)
T PRK13940 248 AAVNVLE 254 (414)
T ss_pred ECcCCCC
Confidence 9998644
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00039 Score=68.35 Aligned_cols=95 Identities=19% Similarity=0.253 Sum_probs=63.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.|+..+++.+..-. .+ +|.++.|..++..+.+.+ .|+.. ....+.++++++||+|+.+|+
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvtaT~ 202 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTVTA 202 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEecC
Confidence 78999999999999998887741 33 577777765433332222 23321 114689999999999999997
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
......+++. +.+|||+.|..++...
T Consensus 203 S~~~~Pvl~~--~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 203 DKTNATILTD--DMVEPGMHINAVGGDC 228 (346)
T ss_pred CCCCCceecH--HHcCCCcEEEecCCCC
Confidence 5432234431 3568999888776553
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0004 Score=67.34 Aligned_cols=90 Identities=18% Similarity=0.224 Sum_probs=63.3
Q ss_pred CEEEEEeccchHHHHHHHHHh-hhhhhcCCc-eEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++++|||.|.||..+++.|.. . +. +|.+++|..++..+.+.+. |+.. ....+.++++++||+|+.+
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~------~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v--~~~~~~~~av~~aDiVvta 201 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVR------DIRSARIWARDSAKAEALALQLSSLLGIDV--TAATDPRAAMSGADIIVTT 201 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhC------CccEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhccCCEEEEe
Confidence 799999999999999999975 4 54 5777777655444444332 4421 1146789999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
||... .++. ...+++|+.+..++.
T Consensus 202 T~s~~--p~i~--~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 202 TPSET--PILH--AEWLEPGQHVTAMGS 225 (326)
T ss_pred cCCCC--cEec--HHHcCCCcEEEeeCC
Confidence 98743 2333 124789998876554
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00038 Score=66.96 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||.|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ....+.+|++.+||+|+.+|
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~taT 190 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSIT 190 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEec
Confidence 8999999999999999998874 144 577777765543333322 24321 12568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+-.. .+++ ...+|||+.|..++...
T Consensus 191 ~s~~--P~~~--~~~l~pg~hV~aiGs~~ 215 (301)
T PRK06407 191 NSDT--PIFN--RKYLGDEYHVNLAGSNY 215 (301)
T ss_pred CCCC--cEec--HHHcCCCceEEecCCCC
Confidence 9643 3443 13568898888776653
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00034 Score=65.72 Aligned_cols=94 Identities=19% Similarity=0.095 Sum_probs=60.8
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hcCcCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e-~v~~ADvVI 183 (317)
.++ +++.|+|.|.+|.+++..|.+. |.+|++.+|..++..+.+.+. |... ..+.++ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 567 8999999999999999999998 888888777644433333332 2211 123333 346899999
Q ss_pred EccCCchHHHHHH-H-HHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYE-K-IFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~-e-i~~~lk~gaiVi~~~ 212 (317)
.++|......+-+ . ....++++.+++|+.
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~~ 214 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDMV 214 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEec
Confidence 9999853211100 0 123467788888764
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0011 Score=61.85 Aligned_cols=82 Identities=23% Similarity=0.306 Sum_probs=57.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|||||+|.||..+...+++- .-+++.++.+|++.+.. +.....+.. ...+++|.+++.|+|+=|..+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 01345444555543322 222233333 25789999999999999999999
Q ss_pred HHHHHHHHHhc
Q 021114 191 QADNYEKIFSC 201 (317)
Q Consensus 191 ~~~vl~ei~~~ 201 (317)
..+...+++..
T Consensus 73 v~e~~~~~L~~ 83 (255)
T COG1712 73 VREYVPKILKA 83 (255)
T ss_pred HHHHhHHHHhc
Confidence 88877776654
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=62.04 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=62.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||.|+||.-.+..+.+. .+.++....+.+.++ .+.+++.|+.. ...+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-----~~~elvaV~d~d~es~~la~A~~~Gi~~---~~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-----EHLEMVAMVGIDPESDGLARARELGVKT---SAEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-----CCcEEEEEEeCCcccHHHHHHHHCCCCE---EECCHHHHhcCCCCCEEEECCC
Confidence 5799999999999998877754 145554334433332 45677788753 1347788775 6799999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
...+.++..... +.|+.|++-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 998887766544 35777765543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.001 Score=58.79 Aligned_cols=78 Identities=17% Similarity=0.182 Sum_probs=53.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..++++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 46899 999999988 5999999999999 9887664332 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++.-... ++ .+.+|+|++|+|++-.
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~~ 110 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGIN 110 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--CE
T ss_pred eeccccc---cc--cccccCCcEEEecCCc
Confidence 9986432 32 2467999999998754
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00063 Score=65.93 Aligned_cols=92 Identities=20% Similarity=0.177 Sum_probs=59.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||+|.||..+++++... .+.+ +.++++..++..+.+.+ .|+.. ....+.+++++ +|+|+++|
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~aT 201 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTTT 201 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEec
Confidence 7899999999999999999754 1554 44444443322222222 24321 11457888887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|... .+++ .+.+|+|+.|..++...
T Consensus 202 ps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 202 PSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 9753 3333 13468999988777653
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00032 Score=66.32 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=63.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCc-CCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e~v~~ADvVI 183 (317)
.++++ +++.|+|.|-+|.+++..|... | .+|++.+|+.++..+.+.+.+... .... .+..+.+.++|+||
T Consensus 119 ~~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivI 190 (278)
T PRK00258 119 VDLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLII 190 (278)
T ss_pred CCCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEE
Confidence 36788 9999999999999999999988 8 578888887544433333322110 0001 13456778999999
Q ss_pred EccCCchHHH--HHHHHHhcCCCCcEEEEe
Q 021114 184 LLISDAAQAD--NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 184 LavP~~~~~~--vl~ei~~~lk~gaiVi~~ 211 (317)
.++|...... ...-....++++.+|+|+
T Consensus 191 naTp~g~~~~~~~~~~~~~~l~~~~~v~Di 220 (278)
T PRK00258 191 NATSAGMSGELPLPPLPLSLLRPGTIVYDM 220 (278)
T ss_pred ECCcCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999765421 101012345667777765
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0017 Score=62.54 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----------CCceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.||..+|..+... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 76 666555432211112110 01111 1356666 78999
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999987
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0071 Score=56.25 Aligned_cols=153 Identities=14% Similarity=0.157 Sum_probs=90.1
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhcCcCCEEEEccCCch
Q 021114 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 121 ~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~v~~ADvVILavP~~~ 190 (317)
.||..+|..|.+. |++|.+..|. +..+.-++.|+...+ + ...++++ +...|+||+++|-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3789999999998 9988877764 334444555643211 1 1123344 678999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEE------EeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 191 QADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV------~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
..+.++.+.+++.++++|+ ..-|+. ...+.. .++++ +++ ......|+.. +..|.|...
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~---~~~~~-~v~~g~~~~~~~~~~pg~v---------~~~~~~~~~- 137 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRE---LLPAR-RILGGVVTHGAVREEPGVV---------HHAGLGATK- 137 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHH---HhCcc-CEEEEEEEEeeEEcCCcEE---------EEeccccEE-
Confidence 8889999999998887765 556774 333433 33432 233 2333344422 112234433
Q ss_pred EEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
|...+... +..+.+.+++...|........+...
T Consensus 138 iG~~~~~~-~~~~~l~~~l~~~~~~~~~~~di~~~ 171 (293)
T TIGR00745 138 IGDYVGEN-EAVEALAELLNEAGIPAELHGDILAA 171 (293)
T ss_pred EecCCCch-HHHHHHHHHHHhCCCCCEecchHHHH
Confidence 44333222 45566677788877665554443333
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00086 Score=57.94 Aligned_cols=76 Identities=14% Similarity=0.140 Sum_probs=59.2
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| ++|.|||-+ ..|..++..|.+. |..|.+..++ ..++++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 9887665432 1267789999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-.. +++ .+.+|+|++|+|++
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidvg 100 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINCS 100 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEcC
Confidence 998763 333 24579999998765
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00094 Score=65.37 Aligned_cols=94 Identities=22% Similarity=0.281 Sum_probs=66.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
...++|||.|.|+..+.+.++.- +++ +|.++.|+.+...+.+ .+.+... -....+.++++++||+|+.+|
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~T 203 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTAT 203 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEec
Confidence 37899999999999999999885 244 5667777654433333 2233210 123678999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|... .++. .+.++||+.|..+++.
T Consensus 204 ~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 204 PSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred CCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 9877 3332 2356799999877764
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0022 Score=62.14 Aligned_cols=91 Identities=16% Similarity=0.130 Sum_probs=64.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcC-----cCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v~-----~ADvVIL 184 (317)
.+|||||+|++|..++..+.+. .+.++....+.+. +..+.+++.|+.. ...+.+++++ +.|+|+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 6899999999999988887764 1456544444433 3345677788753 2357888884 5899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|...+.++..... +.|+.++|-..
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sP 102 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTP 102 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCc
Confidence 999988877766554 45888887654
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=68.67 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=68.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--C----C-----C--cCC---
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-----T--LGD--- 171 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~----~-----~--~~~--- 171 (317)
..+ .++.|||.|.+|...++.++.. |..|++.+++ ....+.+++.|...- + + + ..+
T Consensus 162 vp~-akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPP-AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHH
Confidence 445 7999999999999999999998 9886655544 445677777776420 0 0 0 000
Q ss_pred -------HHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 172 -------IYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 172 -------~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
+.+.++++|+||.++ |-.....++ ++....||+|++|+|.+
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345678999999987 222233444 47788999999999775
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=65.17 Aligned_cols=146 Identities=17% Similarity=0.130 Sum_probs=96.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HH-CC--ceecCCCcCCHHhh---cCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AG--FTEENGTLGDIYET---ISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~-~G--~~~~~~~~~~~~e~---v~~ADvVIL 184 (317)
..||.||++.||+.++.|+.+. |+.|.+++|..++.-+.. .+ .| ++. ..+++|. ++.--.|+|
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~g----a~S~ed~v~klk~PR~iil 76 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKIIG----AYSLEDFVSKLKKPRVIIL 76 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCcccC----CCCHHHHHHhcCCCcEEEE
Confidence 5699999999999999999999 999998998765433221 11 12 331 4577776 467789999
Q ss_pred ccCCchHHH-HHHHHHhcCCCCcEEEEecCc----hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDAAQAD-NYEKIFSCMKPNSILGLSHGF----LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv----~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
.++-...++ +++++.++|.+|.+|+|-+-- +....++ .-.+++=||+.--.+ |.|.-=.|
T Consensus 77 lvkAG~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~e---l~k~GilfvG~GVSG-----------GEEGAR~G- 141 (487)
T KOG2653|consen 77 LVKAGAPVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRE---LAKKGILFVGSGVSG-----------GEEGARYG- 141 (487)
T ss_pred EeeCCCcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHH---HHhcCcEEEecCccC-----------cccccccC-
Confidence 999877765 778999999999999987642 1222221 112355666533322 21111112
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALG 285 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG 285 (317)
+. +.|..+ .+++..++.+++.+-
T Consensus 142 PS-lMpGg~--~~Awp~ik~ifq~ia 164 (487)
T KOG2653|consen 142 PS-LMPGGS--KEAWPHIKDIFQKIA 164 (487)
T ss_pred Cc-cCCCCC--hHHHHHHHHHHHHHH
Confidence 22 345554 789999999998874
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=59.98 Aligned_cols=94 Identities=20% Similarity=0.201 Sum_probs=64.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce---EEEEecCC----ccc-------HHHHHHCCceecCCCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~----~~s-------~~~A~~~G~~~~~~~~~~ 171 (317)
..+++ ++|.|+|.|.+|.++|..|.+. |.. +++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 45788 9999999999999999999988 864 77777762 221 22333332111 0136
Q ss_pred HHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.++++++|+||-++|+.... ++....|.++.++.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999855433 24555666777777654
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=63.00 Aligned_cols=77 Identities=22% Similarity=0.251 Sum_probs=55.0
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCC--ceEEEEe-cCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEc
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSD--IVVKVGL-RKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G--~~Vivg~-r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILa 185 (317)
.+|||||+|.+++ ..+..+++. + +.++... +..++..+.+.+.|+.. .+.+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 6899999996664 578888776 4 3433333 44344455677778741 26799999986 5999999
Q ss_pred cCCchHHHHHHH
Q 021114 186 ISDAAQADNYEK 197 (317)
Q Consensus 186 vP~~~~~~vl~e 197 (317)
+|+..+.++..+
T Consensus 75 tp~~~H~e~~~~ 86 (342)
T COG0673 75 TPNALHAELALA 86 (342)
T ss_pred CCChhhHHHHHH
Confidence 999999887643
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=50.59 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..+++ ++++|+|.|.+|..++..|.+. +. ++.++++ |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 44778 9999999999999999999987 54 4443322 99999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+++...... ++....++++.+|++.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998755422 2345567888888865
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0018 Score=63.28 Aligned_cols=96 Identities=13% Similarity=0.160 Sum_probs=58.7
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceec-CCCcCCHHh-hcCcCCEEEEcc
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIYE-TISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~-~~~~~~~~e-~v~~ADvVILav 186 (317)
+++|+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +....+.++ ...++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 379999996 99999999999875 14555443433221111111111 1100 001222222 457899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|...+.++..+..+ .|+.|+|.++-
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~~ 101 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSAD 101 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCcc
Confidence 99888887776643 58889987763
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0019 Score=58.66 Aligned_cols=86 Identities=12% Similarity=0.059 Sum_probs=58.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +..... .-.++.+.++|+||
T Consensus 5 ~l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~~~~--~~~~~~l~~adlVi 75 (202)
T PRK06718 5 MIDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRWKQK--EFEPSDIVDAFLVI 75 (202)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEEEec--CCChhhcCCceEEE
Confidence 357999 9999999999999999999999 9887766544323333333334 221001 11134578999999
Q ss_pred EccCCchHHHHHHHHH
Q 021114 184 LLISDAAQADNYEKIF 199 (317)
Q Consensus 184 LavP~~~~~~vl~ei~ 199 (317)
.++.+....+.+.+..
T Consensus 76 aaT~d~elN~~i~~~a 91 (202)
T PRK06718 76 AATNDPRVNEQVKEDL 91 (202)
T ss_pred EcCCCHHHHHHHHHHH
Confidence 9999988776555443
|
|
| >KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0055 Score=60.22 Aligned_cols=104 Identities=19% Similarity=0.257 Sum_probs=70.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhh-cCCceEEEEecCCcc-----cHHHHHH---------CCcee-cC-CCcCCHHh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKGSR-----SFAEARA---------AGFTE-EN-GTLGDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~-~~G~~Vivg~r~~~~-----s~~~A~~---------~G~~~-~~-~~~~~~~e 174 (317)
.+|+|||.|+=|.++|+.+...-.+- -|..+|..|.+...- .+.+-.. .|+.. ++ ....|+.|
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 79999999999999999998762221 223345544432110 0000000 01000 00 12568999
Q ss_pred hcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch
Q 021114 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~ 215 (317)
++++||++|..+|.+-..++++++..++|++..-| .+.|+.
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e 143 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVE 143 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeeccee
Confidence 99999999999999999999999999999999854 777764
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0041 Score=50.20 Aligned_cols=93 Identities=22% Similarity=0.224 Sum_probs=59.7
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccCCc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLISDA 189 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP~~ 189 (317)
|.|+|+|.+|..+++.|++. +.++++.+ .+++..+.+.+.|+..-.+...+.+. -++++|.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 87765544 44556778888885432233334332 357899999999987
Q ss_pred hHHHHHHHHHhc-CCCCcEEEEecC
Q 021114 190 AQADNYEKIFSC-MKPNSILGLSHG 213 (317)
Q Consensus 190 ~~~~vl~ei~~~-lk~gaiVi~~~G 213 (317)
...-.+-..+.. .+...++..+..
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECC
Confidence 665444333333 333344444443
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.001 Score=64.48 Aligned_cols=93 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A---~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.|+..+++.+..- +.+ +|.++.|..++..+.+ .+.|+.. ....+.++++++||+|+.+|+
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIV~taT~ 201 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNV-----TDCRQLWVWGRSETALEEYRQYAQALGFAV--NTTLDAAEVAHAANLIVTTTP 201 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHhcCCcE--EEECCHHHHhcCCCEEEEecC
Confidence 8999999999999999998764 133 5777777655433222 2224432 124689999999999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
-.. .+++ .+.+|||+.|.-+++..
T Consensus 202 s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 202 SRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred CCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 543 3443 13578999988777653
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0026 Score=60.59 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=52.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVILavP~~~ 190 (317)
+||||||+|.||..+++.|.+... .++++...+++.....+.. ..... .+.+++++ ..+.|+|+=|.++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~---~~~~l~~V~~~~~~~~~~~-~~~~~----~~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAA---QPCQLAALTRNAADLPPAL-AGRVA----LLDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCC---CceEEEEEecCCHHHHHHh-hccCc----ccCCHHHHhhcCCCEEEECCCHHH
Confidence 689999999999999999876300 0345544455543222222 11222 25688886 578899998888887
Q ss_pred HHHHHHHHHh
Q 021114 191 QADNYEKIFS 200 (317)
Q Consensus 191 ~~~vl~ei~~ 200 (317)
..+....++.
T Consensus 75 v~e~~~~iL~ 84 (267)
T PRK13301 75 IAEHAEGCLT 84 (267)
T ss_pred HHHHHHHHHh
Confidence 7776655544
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0012 Score=64.11 Aligned_cols=91 Identities=21% Similarity=0.256 Sum_probs=61.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||.|.+|.+++..+... .+. +|.++.|..++..+.+.+ .|+.. ....++++++.++|+|+.++
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~-----~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLV-----RPIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CCCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 8999999999999999998863 044 577777664443333332 24331 12468899999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|... .++.. ..+++|+.|..++.
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg~ 228 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMGS 228 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeCC
Confidence 8753 34432 23678887765443
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0011 Score=67.53 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..++| ++++|||.|.+|.+++..|.+. |.++++.+|..++..+.+...+... ....+.. .+.++|+||.+
T Consensus 328 ~~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~--~~~~~~~-~l~~~DiVIna 397 (477)
T PRK09310 328 IPLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKA--FPLESLP-ELHRIDIIINC 397 (477)
T ss_pred CCcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccce--echhHhc-ccCCCCEEEEc
Confidence 45788 9999999999999999999998 9888777765433333333322110 0012222 25789999999
Q ss_pred cCCch
Q 021114 186 ISDAA 190 (317)
Q Consensus 186 vP~~~ 190 (317)
+|...
T Consensus 398 tP~g~ 402 (477)
T PRK09310 398 LPPSV 402 (477)
T ss_pred CCCCC
Confidence 99875
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=63.16 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-| ..|..+|..|.+. |..|++.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 47899 999999999 8999999999988 8888765321 1256788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++..... +. .+++|+|++|+|++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9976443 32 23459999999986
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00041 Score=66.98 Aligned_cols=94 Identities=22% Similarity=0.299 Sum_probs=53.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH--HC-CceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~~-G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.||..+++.+...+ ++ +|.++.|+.++..+.+. +. |+.. ....+.++++++||+|+.+||
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT~ 201 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTATP 201 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE---
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEccC
Confidence 78999999999999999998751 44 56677766433222222 22 4332 125689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
-.....+++ ...+++|+.|.-++..
T Consensus 202 s~~~~P~~~--~~~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 202 STTPAPVFD--AEWLKPGTHINAIGSY 226 (313)
T ss_dssp -SSEEESB---GGGS-TT-EEEE-S-S
T ss_pred CCCCCcccc--HHHcCCCcEEEEecCC
Confidence 765212333 2357889888876654
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0012 Score=64.33 Aligned_cols=133 Identities=19% Similarity=0.073 Sum_probs=82.3
Q ss_pred cccccchhhhhhcccccc-hhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 72 LDFETSVFKKDAISLANR-DEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 72 ~~f~~~~~~~~~~~~~~~-~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+--+.++-..-+....| -|. .++|+-.+--..-.... -++.|||.|-.|..-|+-+... |.+|.+.+.+.
T Consensus 130 LaPMSeVAGrla~q~Ga~~lek-~~GG~GvllgGvpGV~~-~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~ 201 (371)
T COG0686 130 LAPMSEVAGRLAAQAGAYYLEK-TNGGKGVLLGGVPGVLP-AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNI 201 (371)
T ss_pred cchHHHHhhhHHHHHHHHHHHh-ccCCceeEecCCCCCCC-ccEEEECCccccchHHHHHhcc------CCeeEEEecCH
Confidence 333444444433333333 344 66666544212122223 5899999999999999987766 88898887764
Q ss_pred cccHHHHHHCCcee--cCCCcCCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 151 SRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 151 ~~s~~~A~~~G~~~--~~~~~~~~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+....-...+... .-.+...++|.+.++|+||-++ |-.....++ +++.++||||++|+|++
T Consensus 202 ~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 202 DRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred HHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 33222222223221 0122346788999999999764 555666644 58899999999998764
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0043 Score=58.26 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=88.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.+||||.|..|.+......+- ++..- +. .+++.+.++. .+.. ..+.+...+-.++++.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~cs-~i--~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVACS-AI--SSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------heeeh-hh--hhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 6799999999999955544333 33321 11 1233334433 2222 2244444556678888888
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh-hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe-
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV- 265 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp- 265 (317)
+..+.++... ..-+||++|++++|+.- +.+.. .-..+.--...||++..+...+-.++. .+. + |..
T Consensus 77 d~~~s~vaa~--~~~rpg~iv~HcSga~~~~il~~---~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~-~-~~i~ 144 (289)
T COG5495 77 DALYSGVAAT--SLNRPGTIVAHCSGANGSGILAP---LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDT-I-FGIT 144 (289)
T ss_pred HHHHHHHHHh--cccCCCeEEEEccCCCchhhhhh---hhhcCCcceeecccccccCCHHHHHhC-----ccc-E-EEee
Confidence 7644333322 23579999999999863 22221 112233446799999988766655544 222 3 333
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+.| +.....++.|..-+|+..++
T Consensus 145 eaD--~~g~ai~q~la~emgg~~f~ 167 (289)
T COG5495 145 EAD--DVGYAIVQSLALEMGGEPFC 167 (289)
T ss_pred ccc--ccccHHHHHHHHHhCCCcee
Confidence 333 34566788999999998765
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0041 Score=60.21 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=44.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~A 179 (317)
.+. +||+|||.|.||.++|..+... | .++++.+...+.....+.+ .+....-....+.+ .+++|
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~A 74 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDS 74 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCC
Confidence 345 8999999999999999998887 7 3655555443221111211 11100000124555 77999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+||++.
T Consensus 75 DiVVita 81 (319)
T PTZ00117 75 DVVVITA 81 (319)
T ss_pred CEEEECC
Confidence 9999998
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0039 Score=59.78 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=45.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|||.|.+|.++|..|... |. ++++.++..+.....+.+. +... .....+. +.+++||+|
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~-~i~~~~~-~~l~~aDIV 72 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPV-KIKAGDY-SDCKDADIV 72 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCe-EEEcCCH-HHhCCCCEE
Confidence 5899999999999999999988 74 6666666544322222221 1100 0012344 457899999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|+++..
T Consensus 73 Iitag~ 78 (306)
T cd05291 73 VITAGA 78 (306)
T ss_pred EEccCC
Confidence 999875
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0032 Score=60.41 Aligned_cols=107 Identities=17% Similarity=0.198 Sum_probs=80.7
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hh-hhhhcccCCCCCccEE
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LG-HLQSIGLDFPKNIGVI 233 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~---l~-~~~~~~~~l~~~i~vV 233 (317)
+.|+.. .+|-.|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+. +- .++. .=++++.+.
T Consensus 126 daGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le~---l~R~DvgIs 198 (342)
T PRK00961 126 DLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFKD---LGRDDLNVT 198 (342)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHHH---hCcccCCee
Confidence 367764 5677789999999999999887 5789999999999999999877663 22 2222 226789999
Q ss_pred EeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
..|| +..+.+. |+.+. -.+..++++++...+|.++.|..
T Consensus 199 S~HP-aaVPgt~-----Gq~~i---------~egyAtEEqI~klveL~~sa~k~ 237 (342)
T PRK00961 199 SYHP-GAVPEMK-----GQVYI---------AEGYADEEAVEKLYEIGKKARGN 237 (342)
T ss_pred ccCC-CCCCCCC-----Cceec---------ccccCCHHHHHHHHHHHHHhCCC
Confidence 9999 3344431 43222 35678899999999999999965
|
|
| >KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0036 Score=58.81 Aligned_cols=155 Identities=11% Similarity=0.121 Sum_probs=99.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceec----------CCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----------NGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----------~~~~~~ 171 (317)
.||+|+|.|++|++.|..+... |++|..++-..+ +.+....+.|.... -+.+++
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 5899999999999999999998 999877654321 11122223332110 023568
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEEEecCch-hhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGFL-LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi~~~Gv~-l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
++|++++|=.|-=|+|..-.. .++.++-..+.|..++.-+.+.. ...+-+ .+-.....+-.||--|-. |
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPy-----f 149 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPY-----F 149 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCc-----c
Confidence 999999987777788865543 36677666676766665443332 222221 222345678899944321 1
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
--. .=+.|+.-++++.+++..++.+.+|-..+
T Consensus 150 iPL---------vElVPaPwTsp~tVdrt~~lM~sigq~pV 181 (313)
T KOG2305|consen 150 IPL---------VELVPAPWTSPDTVDRTRALMRSIGQEPV 181 (313)
T ss_pred cch---------heeccCCCCChhHHHHHHHHHHHhCCCCc
Confidence 111 12578888999999999999999995443
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0026 Score=61.17 Aligned_cols=77 Identities=13% Similarity=0.100 Sum_probs=60.4
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||-+. .|..+|.-|... |..|.+.... ..++.+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 47899 9999999998 999999999988 8887665422 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++--.. ++. .+.+|+|++|+|++-
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvGi 237 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVGI 237 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEecc
Confidence 776432 232 236799999999874
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.004 Score=61.04 Aligned_cols=93 Identities=12% Similarity=0.133 Sum_probs=58.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEE-EEecCC--cccHHHHHHCC----ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKG--SRSFAEARAAG----FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~--~~s~~~A~~~G----~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++|+|||. |.+|..+++.|.+. .+.+++ +..++. .+... ...+ .........+.++++.++|+||
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf 73 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVS--EVHPHLRGLVDLNLEPIDEEEIAEDADVVF 73 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChH--HhCccccccCCceeecCCHHHhhcCCCEEE
Confidence 58999997 99999999999865 134554 222221 11121 1121 1000000125566667899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+|+|.....++..++.+ .|+.|+|.++.
T Consensus 74 ~alP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 74 LALPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred ECCCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 99999888777776644 58889987764
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0045 Score=59.59 Aligned_cols=70 Identities=19% Similarity=0.206 Sum_probs=43.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--Ccee-c--CCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-E--NGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~--~~~~~~~~e~v~~ADvVIL 184 (317)
|||+|||.|.+|.++|..|... |. ++++.++..+.....+... .... . .....+. +.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEE
Confidence 5899999999999999999988 84 5655554432221122211 1100 0 0011344 56899999999
Q ss_pred ccCC
Q 021114 185 LISD 188 (317)
Q Consensus 185 avP~ 188 (317)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9885
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0022 Score=61.52 Aligned_cols=76 Identities=17% Similarity=0.203 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||.+ ..|..+|..|... |..|.+..++. .++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~t-------------------~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSKT-------------------ENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecCh-------------------hHHHHHHhhCCEEEE
Confidence 47899 999999999 8999999999888 88877665321 267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-. .++.+ .++|+|++|+|++
T Consensus 202 Avgk~---~lv~~--~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFITP--DMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccCH--HHcCCCcEEEEee
Confidence 99743 33331 1259999999887
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0052 Score=59.08 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=81.5
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEE
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~ 234 (317)
+.|+.. .+|-.|+++++|++|+=+|-.. +.++++++.++++.|++|+.++-+. +-++-+ .+. ++++.+..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 467764 5677889999999999999887 5789999999999999999877663 222222 122 57899999
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.|| +..+.+. |--|+ ..+..++++++...+|.++.|..
T Consensus 198 ~HP-aaVPgt~------------~q~Yi--~egyAtEEqI~klveL~~sa~k~ 235 (340)
T TIGR01723 198 YHP-GCVPEMK------------GQVYI--AEGYASEEAVNKLYELGKKARGK 235 (340)
T ss_pred cCC-CCCCCCC------------CceEe--ecccCCHHHHHHHHHHHHHhCCC
Confidence 999 3333321 22343 47889999999999999999965
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0052 Score=61.00 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=53.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcC---CHHhh-cCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG---DIYET-ISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~---~~~e~-v~~ADvVILav 186 (317)
|+|.|+|+|.+|..+++.|++. |+++++..+. .+..+.+.+ .|+..-.+... .++++ +.++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 9987655544 333444443 44321111112 23445 78999999999
Q ss_pred CCchHHHHHHH
Q 021114 187 SDAAQADNYEK 197 (317)
Q Consensus 187 P~~~~~~vl~e 197 (317)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766544433
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0031 Score=63.03 Aligned_cols=79 Identities=19% Similarity=0.175 Sum_probs=56.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCC---c--eecC-CCcCCHHhhcCcCCEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEEN-GTLGDIYETISGSDLVL 183 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~~-~~~~~~~e~v~~ADvVI 183 (317)
+++|.|||+|.+|..+|..|.+. | .+|+++.|+.++ ++++.... + ..-| .....+.+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 48999999999999999999888 7 789888887443 33443332 1 1101 01224568899999999
Q ss_pred EccCCchHHHHHH
Q 021114 184 LLISDAAQADNYE 196 (317)
Q Consensus 184 LavP~~~~~~vl~ 196 (317)
.+.|+.....+++
T Consensus 74 n~~p~~~~~~i~k 86 (389)
T COG1748 74 NAAPPFVDLTILK 86 (389)
T ss_pred EeCCchhhHHHHH
Confidence 9999988776654
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.002 Score=61.51 Aligned_cols=77 Identities=14% Similarity=0.099 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~v~~AD 180 (317)
..+++ +++.|||.|-+|.+++..|... |. ++++.+|..++..+.+...+ ... -....+..+.++++|
T Consensus 123 ~~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~-~~~~~~~~~~~~~aD 194 (284)
T PRK12549 123 PDASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAAR-ATAGSDLAAALAAAD 194 (284)
T ss_pred cCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeE-EEeccchHhhhCCCC
Confidence 35678 9999999999999999999998 87 67777776554444443321 110 001234456778999
Q ss_pred EEEEccCCch
Q 021114 181 LVLLLISDAA 190 (317)
Q Consensus 181 vVILavP~~~ 190 (317)
+||.++|...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999753
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=60.82 Aligned_cols=76 Identities=16% Similarity=0.141 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs~-------------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHIF-------------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999988 8999999999988 8877654321 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975432 32 24578999999986
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0061 Score=56.25 Aligned_cols=81 Identities=20% Similarity=0.164 Sum_probs=55.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-HH-HCCceecCCCcCC---HHhh-cCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-AR-AAGFTEENGTLGD---IYET-ISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~-~~G~~~~~~~~~~---~~e~-v~~ADvVILa 185 (317)
|+|.|||+|..|.++|+.|.+. |++|++.++..+ ..+. +. +.+...-.+..++ +.++ +.++|+++.+
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~-~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEE-RVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHH-HHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 6899999999999999999999 999876665544 3333 22 2332211111222 3444 7889999999
Q ss_pred cCCchHHHHHHHHH
Q 021114 186 ISDAAQADNYEKIF 199 (317)
Q Consensus 186 vP~~~~~~vl~ei~ 199 (317)
+..+.+.-++-.+.
T Consensus 74 t~~d~~N~i~~~la 87 (225)
T COG0569 74 TGNDEVNSVLALLA 87 (225)
T ss_pred eCCCHHHHHHHHHH
Confidence 99988776665544
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0028 Score=57.88 Aligned_cols=95 Identities=17% Similarity=0.154 Sum_probs=62.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC-cCC----HHhhcCcC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT-LGD----IYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~-~~~----~~e~v~~A 179 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+.-..........-. .+ ..+ +.+.+++|
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs---~t~~~~~~~~l~~~~~~A 127 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE---KHHVTDEEAMTLDCLSQS 127 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc---cccccchhhHHHHHhhhC
Confidence 37999 999999966 6899999999988 888877643221100000000000 00 013 67899999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+||.+++-.... +. .+.+|+|++|+|++..
T Consensus 128 DIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi~ 158 (197)
T cd01079 128 DVVITGVPSPNYK--VP--TELLKDGAICINFASI 158 (197)
T ss_pred CEEEEccCCCCCc--cC--HHHcCCCcEEEEcCCC
Confidence 9999999975531 22 2356899999998753
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0043 Score=64.07 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=69.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--CCC------------c-CCH
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT------------L-GDI 172 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~~------------~-~~~ 172 (317)
..| .++.|||.|.+|...++.++.. |.+|+ ..+.+....+.+++.|.... +.. . .+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~-a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVR-AFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEE-EEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 457 8999999999999999999998 98754 45555666788888886510 000 0 010
Q ss_pred --------HhhcCcCCEEEEccCCch--HHHHH-HHHHhcCCCCcEEEEec
Q 021114 173 --------YETISGSDLVLLLISDAA--QADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 173 --------~e~v~~ADvVILavP~~~--~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+.++++|+||-++.... ...++ ++....||+|.+|+|++
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122367999999986432 34554 78889999999998764
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0027 Score=62.40 Aligned_cols=164 Identities=14% Similarity=0.118 Sum_probs=91.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHh-hhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~-~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.+|+| ++|.|+|. |.||..+++.|.. . |. ++++..|...+..+.+.+.+.. ...++++++.++|+|
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~~------gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiV 219 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAKT------GVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIV 219 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhhC------CCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEE
Confidence 47899 99999998 8999999999974 3 43 5666666533333334333211 134788999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEE----eccCCCC----------hhhHHH
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIA----VCPKGMG----------PSVRRL 247 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv-~l~~~~~~~~~l~~~i~vV~----vhPn~pg----------~~~r~l 247 (317)
+.++...... ++.. ..++++.+++|.+=- .+.. . .. .+++.++. .+|-... ...|..
T Consensus 220 v~~ts~~~~~-~I~~--~~l~~~~~viDiAvPRDVd~--~--v~-~~~V~v~~gG~V~~p~~vd~~l~~~v~~~~~~r~~ 291 (340)
T PRK14982 220 VWVASMPKGV-EIDP--ETLKKPCLMIDGGYPKNLDT--K--VQ-GPGIHVLKGGIVEHSLDIDWKIMEIAEMDNPQRQM 291 (340)
T ss_pred EECCcCCcCC-cCCH--HHhCCCeEEEEecCCCCCCc--c--cC-CCCEEEEeCCccccCCCcCccHHHHHhccchhhHH
Confidence 9888653321 1211 234788888887621 1111 0 01 13444432 2221111 111111
Q ss_pred Hhhcc---cccCCCceEEEEeccC-CCHHHHHHHHHHHHHcCCCc
Q 021114 248 YVQGK---EINGAGINSSFAVHQD-VDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 248 f~~G~---e~~g~G~~~iitp~~d-~~~ea~e~a~~l~~alG~~~ 288 (317)
|..-- ---.+|..--|+-..+ .+-+.++.+.+|...-|++.
T Consensus 292 ~Ac~AEtiiL~leg~~~~fS~Gr~~i~~~~v~~i~~~a~kHGf~~ 336 (340)
T PRK14982 292 FACFAEAMLLEFEGCHTNFSWGRNQITLEKMEFIGEASVKHGFSP 336 (340)
T ss_pred HHHHHHHHHHHhcCCccCCCcCccccCHHHHHHHHHHHHHcCCcc
Confidence 11100 0001333333455555 67888899999999998764
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0037 Score=60.17 Aligned_cols=77 Identities=16% Similarity=0.187 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ .+|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999954 7899999999988 8877655422 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++=
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVGi 228 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVGI 228 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEccC
Confidence 998653 332 345789999999863
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0022 Score=63.73 Aligned_cols=97 Identities=20% Similarity=0.189 Sum_probs=61.7
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC-----CceecCCCcCCHHhhcCcCCEEE
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-----G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+-++++|||.|.|+..+++.+..-.. ++ +|.++.|..++..+.+.+. |+.. -..+.+.+|++++||+|+
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~----~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~-v~~~~s~~eav~~ADIVv 228 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCP----GIDTIKIKGRGQKSLDSFATWVAETYPQITN-VEVVDSIEEVVRGSDIVT 228 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcC----CccEEEEECCCHHHHHHHHHHHHHhcCCCce-EEEeCCHHHHHcCCCEEE
Confidence 33799999999999999999877410 24 5777777654433322221 3210 012568999999999999
Q ss_pred EccCCchH----HHHHHHHHhcCCCCcEEEEecC
Q 021114 184 LLISDAAQ----ADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 184 LavP~~~~----~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.+|+.... ..+++ ...+|||+.|+..+.
T Consensus 229 taT~s~~~~~s~~Pv~~--~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 229 YCNSGETGDPSTYPYVK--REWVKPGAFLLMPAA 260 (379)
T ss_pred EccCCCCCCCCcCcEec--HHHcCCCcEEecCCc
Confidence 99974331 13443 234678887764433
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0037 Score=60.38 Aligned_cols=77 Identities=14% Similarity=0.140 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999955 6899999999988 8887665322 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvGi 231 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVGI 231 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998543 233 245789999999874
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0052 Score=52.67 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=43.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||. |++|.++|..|... +. ++.+.++........+.+ .+... .......+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 68999999 99999999999987 54 565555543222222222 11110 012255678899999
Q ss_pred EEEcc
Q 021114 182 VLLLI 186 (317)
Q Consensus 182 VILav 186 (317)
|+++.
T Consensus 73 vvita 77 (141)
T PF00056_consen 73 VVITA 77 (141)
T ss_dssp EEETT
T ss_pred EEEec
Confidence 99987
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0056 Score=61.26 Aligned_cols=94 Identities=15% Similarity=0.156 Sum_probs=61.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc---------------cHHHHHHCCcee-cCCCcCCHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---------------SFAEARAAGFTE-ENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~---------------s~~~A~~~G~~~-~~~~~~~~~e~ 175 (317)
|||.|||.|-.|...+..|.+. |++|+.. |.++. -++...+.+... +-...+|.+++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~v-Did~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a 73 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVCV-DIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEA 73 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEEE-eCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHH
Confidence 7899999999999999999999 9987544 43321 122222211110 00014688999
Q ss_pred cCcCCEEEEccCCchH---------H-HHHHHHHhcCCCCcEEEEec
Q 021114 176 ISGSDLVLLLISDAAQ---------A-DNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 176 v~~ADvVILavP~~~~---------~-~vl~ei~~~lk~gaiVi~~~ 212 (317)
++++|++++++|.... . .+.+++.++++..++|+.=+
T Consensus 74 ~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KS 120 (414)
T COG1004 74 VKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKS 120 (414)
T ss_pred HhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcC
Confidence 9999999999874321 1 24567889987766665433
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0013 Score=57.54 Aligned_cols=100 Identities=17% Similarity=0.145 Sum_probs=64.3
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC------------------
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------------ 166 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~------------------ 166 (317)
+..+.. .+|.|+|.|+.|..-++.++.. |.++++.+.. ....+.....+...-.
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 455666 8999999999999999999998 9987766554 3333444444432100
Q ss_pred ----CCcCCHHhhcCcCCEEEEc--cCCchHHHHHH-HHHhcCCCCcEEEEec
Q 021114 167 ----GTLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 167 ----~~~~~~~e~v~~ADvVILa--vP~~~~~~vl~-ei~~~lk~gaiVi~~~ 212 (317)
.....+.+.++.+|+||.+ .|......++. +....||++.+|+|++
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 0011355678999999963 45556667664 7888899999999874
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0064 Score=58.87 Aligned_cols=78 Identities=10% Similarity=0.169 Sum_probs=51.7
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.||.. .+..++.. .+++++...+.+.+. .+.+. +.. .+.+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~--~~~~~~~~~----~~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATK--VKADWPTVT----VVSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHH--HHhhCCCCc----eeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999984 56666553 156665445544322 12222 222 2568999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (346)
T PRK11579 74 NDTHFPLAKAALE 86 (346)
T ss_pred cHHHHHHHHHHHH
Confidence 9988876665443
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0044 Score=59.54 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8887765422 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986443 32 34578999999986
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0045 Score=59.33 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999955 7899999999988 8887665432 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9986543 32 23478999999985
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0084 Score=48.51 Aligned_cols=77 Identities=19% Similarity=0.179 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
-+|+| +++.|||.|.+|..=++.|.+. |.+|++..... ...+..+... ....++.+.++|+|+++
T Consensus 3 l~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~-----~~~~~~i~~~---~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 3 LDLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI-----EFSEGLIQLI---RREFEEDLDGADLVFAA 67 (103)
T ss_dssp E--TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE-----HHHHTSCEEE---ESS-GGGCTTESEEEE-
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch-----hhhhhHHHHH---hhhHHHHHhhheEEEec
Confidence 46889 9999999999999999999999 98877665442 1111222221 12445678999999999
Q ss_pred cCCchHHHHHHH
Q 021114 186 ISDAAQADNYEK 197 (317)
Q Consensus 186 vP~~~~~~vl~e 197 (317)
+.+....+.+.+
T Consensus 68 t~d~~~n~~i~~ 79 (103)
T PF13241_consen 68 TDDPELNEAIYA 79 (103)
T ss_dssp SS-HHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 998776654443
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0041 Score=59.60 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|.| +++.|||-++ .|..|++-|... +..|.+.... ..++.+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 47899 9999999886 699999999998 8888765433 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++--... +. .+.+|+|++|+|++--
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVGin 230 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVGIN 230 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecCCc
Confidence 9875443 22 4567999999998743
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0046 Score=59.39 Aligned_cols=77 Identities=13% Similarity=0.180 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999965 6899999999988 8887765332 2367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++-
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvGi 229 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVGI 229 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEeec
Confidence 9986543 32 235789999999874
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0056 Score=53.55 Aligned_cols=84 Identities=17% Similarity=0.143 Sum_probs=56.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|...++.|.+. |.+|++.... . .+...+.+ +......+ . ++-+.++|+|+
T Consensus 8 ~l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~--~-~~~l~~l~~i~~~~~~~-~-~~dl~~a~lVi 75 (157)
T PRK06719 8 MFNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPE--I-CKEMKELPYITWKQKTF-S-NDDIKDAHLIY 75 (157)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCc--c-CHHHHhccCcEEEeccc-C-hhcCCCceEEE
Confidence 478999 9999999999999999999999 9987665322 1 12222222 21111111 1 22378899999
Q ss_pred EccCCchHHHHHHHHHh
Q 021114 184 LLISDAAQADNYEKIFS 200 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~ 200 (317)
.++.+.+....+.+...
T Consensus 76 aaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 76 AATNQHAVNMMVKQAAH 92 (157)
T ss_pred ECCCCHHHHHHHHHHHH
Confidence 99999887666655443
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0053 Score=59.02 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999966 6899999999988 8887665322 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++-
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvGi 230 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVGM 230 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEccC
Confidence 9986543 32 245789999999863
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0052 Score=59.08 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||- ...|..+|.-|... |..|++...+ ..++++.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46899 99999995 57899999999988 8887765321 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvGi 231 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVGV 231 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEeec
Confidence 997544 333 234689999999863
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0054 Score=59.37 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=59.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999966 6899999999988 8888765322 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-. .++. .+++|+|++|+|++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 2333 24578999999986
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0052 Score=56.64 Aligned_cols=79 Identities=16% Similarity=0.052 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc----------ccHHHHHHCCceecCCC---cCCH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEENGT---LGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----------~s~~~A~~~G~~~~~~~---~~~~ 172 (317)
.+|+| ++|+|.|+|++|..+|+.|.+. |..++...+.+. +..+...+.+-.. ... ..+.
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~-~~~~~~~~~~ 90 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSA-RVKVQDYFPG 90 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCcc-ccCcccccCc
Confidence 57899 9999999999999999999998 987665555554 4444444433221 000 1111
Q ss_pred Hhhc-CcCCEEEEccCCchHH
Q 021114 173 YETI-SGSDLVLLLISDAAQA 192 (317)
Q Consensus 173 ~e~v-~~ADvVILavP~~~~~ 192 (317)
++++ .+||+++-|.+.+.+.
T Consensus 91 ~~l~~~~~DVlipaA~~~~i~ 111 (217)
T cd05211 91 EAILGLDVDIFAPCALGNVID 111 (217)
T ss_pred ccceeccccEEeeccccCccC
Confidence 2222 3799999998876543
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.006 Score=58.73 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=58.9
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 6899 999999965 6899999999988 8887665432 23678899999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.-.. ++. .+++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98543 332 24578999999976
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0043 Score=59.07 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=53.9
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCc---CCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~---~~~~e~v~~ADvV 182 (317)
.++| +++.|||.|-+|.+++..|.+. |. ++++.+|+.++..+.+.+.+....-... .+..+.+.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 5788 9999999999999999999998 87 5778888755544444433211000001 1234567889999
Q ss_pred EEccCCch
Q 021114 183 LLLISDAA 190 (317)
Q Consensus 183 ILavP~~~ 190 (317)
|-++|...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999764
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0064 Score=58.40 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+. |..|++.... ..++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 37899 999999955 6899999999988 8887665432 1367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9986543 32 24578999999986
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.012 Score=57.19 Aligned_cols=69 Identities=23% Similarity=0.196 Sum_probs=43.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH----H---CC--ceecCCCcCCHHhhcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR----A---AG--FTEENGTLGDIYETIS 177 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~----~---~G--~~~~~~~~~~~~e~v~ 177 (317)
++. +||+|||.|.||..+|..+... |+ ++++.+...+.....+. . .+ ... ....+. +.++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I--~~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKV--IGTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEE--EECCCH-HHhC
Confidence 344 8999999999999999998877 75 65554443321111111 1 11 111 012455 5789
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
+||+||++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0054 Score=60.71 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999955 6899999999988 8877665322 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9986443 22 24578999999976
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0086 Score=57.15 Aligned_cols=64 Identities=30% Similarity=0.281 Sum_probs=39.8
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH---HC----Cc--eecCCCcCCHHhhcCcCCEEE
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----GF--TEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~---~~----G~--~~~~~~~~~~~e~v~~ADvVI 183 (317)
|+|||.|.||..+|..+... |+ +|++.+...+.....+. .. +. .. ....+. +.+++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d~-~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTNDY-EDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCCH-HHhCCCCEEE
Confidence 68999999999999998877 65 77666554322111111 11 10 10 012344 5689999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 976
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0065 Score=58.38 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHh--hhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~--~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.+|+| |++.|||- ...|..++.-|.. . +..|.+...+ ..++++.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 47899 99999995 5789999999987 5 6677655322 23678899999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|.++.-.. ++. .+++|+|++|+|++-
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvGi 233 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVGV 233 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEccc
Confidence 99998654 233 245789999999863
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.015 Score=48.37 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=56.9
Q ss_pred CEEEEEe----ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG----~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+|+||| -+..|.-+.++|++. |++|+-.+.+.. .. .|... +.+++|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~~-~i-----~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKGG-EI-----LGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTCS-EE-----TTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCce-EE-----CcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 788999999999998 988754443322 11 35442 6688884489999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+....++++++... ..+.+++..+.
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~ 89 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGA 89 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcch
Confidence 99999999987654 34455555553
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.025 Score=48.77 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=71.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcCcCCEEEEcc
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~~ADvVILav 186 (317)
.++ ++|.+||+| -|.++|+.|.+. |++| ++.|.++...+.+++.+.... ++-.....+.-+++|+|--.=
T Consensus 15 ~~~-~kileIG~G-fG~~vA~~L~~~------G~~V-iaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysir 85 (134)
T PRK04148 15 GKN-KKIVELGIG-FYFKVAKKLKES------GFDV-IVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIR 85 (134)
T ss_pred ccC-CEEEEEEec-CCHHHHHHHHHC------CCEE-EEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence 367 899999999 899999999998 9987 466666666777777764221 233344557889999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+.....-+-++....+-..++.-.+|
T Consensus 86 pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 86 PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 998887777777777765555553333
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0064 Score=59.86 Aligned_cols=77 Identities=18% Similarity=0.092 Sum_probs=59.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+. |..|.+...+ ..++++.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 6899999999988 8877655322 1267788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+++|+|++|+|++=
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVGi 287 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVGT 287 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEccc
Confidence 9986543 22 245789999999863
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0074 Score=57.95 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-+ ..|..+|.-|.+. |..|++...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 36899 999999965 6899999999988 8887655432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986443 32 23578999999976
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.009 Score=58.21 Aligned_cols=82 Identities=12% Similarity=0.154 Sum_probs=52.2
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.++.- .+..+....+ +.+++...+++.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~----~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKD----SWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCC----CEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 58999999998753 3454433200 4566544554433334444554321 2568999995 67999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 75 ~~H~~~~~~al~ 86 (344)
T PRK10206 75 DSHFEYAKRALE 86 (344)
T ss_pred hHHHHHHHHHHH
Confidence 998887665443
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0034 Score=57.14 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=51.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~~ 189 (317)
++|+|||+|.+|..+++.+... + .|++++...+.+...... .-.|+.. ....++.+++++ .|.|++++|..
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 7899999999999999864321 1 277766555543321110 0123321 113467777754 99999999999
Q ss_pred hHHHHHHHHH
Q 021114 190 AQADNYEKIF 199 (317)
Q Consensus 190 ~~~~vl~ei~ 199 (317)
...++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 8877666544
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0078 Score=58.12 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=59.4
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..++.-|.+. |..|++...+ ..++.+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37999 999999965 6899999999988 8887655432 1367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9986543 22 23568999999975
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.012 Score=61.66 Aligned_cols=77 Identities=12% Similarity=0.205 Sum_probs=56.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP 187 (317)
.+|.|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...-.+..++.+- -+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 9887554 455666778888885432222333332 2679999999999
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
+......+
T Consensus 474 d~~~n~~i 481 (601)
T PRK03659 474 EPEDTMKI 481 (601)
T ss_pred CHHHHHHH
Confidence 98766433
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.013 Score=60.55 Aligned_cols=79 Identities=18% Similarity=0.209 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADv 181 (317)
.++++ .|-|+|+|.+|..+++.|++. |+++++.+ ++++..+.+++.|+..-.+...+.+- -++++|.
T Consensus 414 ~~~~~--hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~ 484 (558)
T PRK10669 414 VDICN--HALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARW 484 (558)
T ss_pred cccCC--CEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCE
Confidence 34444 699999999999999999999 98876554 45556777777775432222334321 2579999
Q ss_pred EEEccCCchHHH
Q 021114 182 VLLLISDAAQAD 193 (317)
Q Consensus 182 VILavP~~~~~~ 193 (317)
++++++++....
T Consensus 485 viv~~~~~~~~~ 496 (558)
T PRK10669 485 LLLTIPNGYEAG 496 (558)
T ss_pred EEEEcCChHHHH
Confidence 999999876543
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0094 Score=57.27 Aligned_cols=76 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..++.-|.+. +..|++...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999965 6899999999888 8877665322 2367788999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-.. ++. .+++|+|++|+|++
T Consensus 207 AvGk~~---~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKAE---LVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEee
Confidence 998533 333 24578999999986
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=53.67 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=59.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC--CcccHH------------------HHH-H-CC
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--GSRSFA------------------EAR-A-AG 161 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~--~~~s~~------------------~A~-~-~G 161 (317)
...|+. ++|+|||+|-||..+|..|... |+ ++++.++. ....+. ... + ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 466777 9999999999999999999998 87 45555433 010000 000 0 00
Q ss_pred -ceec----CCCcCCHHhhcCcCCEEEEccCCchHHH--HHHHHHhcCCCCcEEEEecCc
Q 021114 162 -FTEE----NGTLGDIYETISGSDLVLLLISDAAQAD--NYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 162 -~~~~----~~~~~~~~e~v~~ADvVILavP~~~~~~--vl~ei~~~lk~gaiVi~~~Gv 214 (317)
...+ .-+..+..+.++++|+||-++ ++...+ ++++....++...++. .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~-Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAF-DNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 1100 000123456788999999994 554443 4457777776544444 5554
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.018 Score=55.43 Aligned_cols=90 Identities=14% Similarity=0.255 Sum_probs=66.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILav 186 (317)
.+|.|.| .|.+|..+.++|++. |+++++...+. ... -.|+.. +.+++|+-+. .|+.++++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~~~-----v~G~~~----y~sv~dlp~~~~~DlAvi~v 73 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGGTT-----VLGLPV----FNTVAEAVEATGANASVIYV 73 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCCCe-----EeCeec----cCCHHHHhhccCCCEEEEEc
Confidence 6789999 488999999999998 87644444443 211 146653 6688888776 89999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~ 217 (317)
|.....+.+++... ..-...+++++||.+.
T Consensus 74 p~~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 74 PPPFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred CHHHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 99999998887665 2335578899999653
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.01 Score=59.16 Aligned_cols=68 Identities=18% Similarity=0.152 Sum_probs=43.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|.|||+|.+|.++|+.|++. |++|+..+++ ...... .+... +......+...+++|+||.+.+...
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~-~~~~~~---~~~~~-~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKS-LEALQS---CPYIH-ERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCC-ccccch---hHHHh-hhhcCCcHHHhcCCCEEEECCCCCC
Confidence 8899999999999999999999 9887655543 222211 11110 0001233344578999999876543
|
|
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.016 Score=56.93 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=56.2
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceec-----------CC---CcCCHHhhcCc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYETISG 178 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------~~---~~~~~~e~v~~ 178 (317)
|||+|+|.||..+++.+.+. .+++++...+.+.+.. ..|...|+... +. ...++++++.+
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 1577655555433221 23333332110 00 03468899999
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+|+|+.|+|......-. +....++++++++
T Consensus 76 vDiVve~Tp~~~~~~na-~~~~~~GakaVl~ 105 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK-PLYEKAGVKAIFQ 105 (333)
T ss_pred CCEEEECCCCCCChhhH-HHHHhCCcCEEEE
Confidence 99999999987664433 3333456666554
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.015 Score=56.29 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=44.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--------CceecCCCcCCHHhhcCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISG 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--------G~~~~~~~~~~~~e~v~~ 178 (317)
+| +||+|||.|.+|.++|..|... |. ++.+.+...+.....+.+. .... ...+ .+.+++
T Consensus 5 ~~-~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i---~~~~-~~~~~~ 73 (315)
T PRK00066 5 QH-NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI---YAGD-YSDCKD 73 (315)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE---EeCC-HHHhCC
Confidence 46 8999999999999999999988 76 5555554333222222211 1111 1223 456899
Q ss_pred CCEEEEccC
Q 021114 179 SDLVLLLIS 187 (317)
Q Consensus 179 ADvVILavP 187 (317)
||+||++.-
T Consensus 74 adivIitag 82 (315)
T PRK00066 74 ADLVVITAG 82 (315)
T ss_pred CCEEEEecC
Confidence 999999653
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.03 Score=51.02 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=54.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
-+|+| +++.|||.|.+|..-++.|.+. |.+|++......+.++...+.| +....+.. + .+.+.++|+||.
T Consensus 5 l~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~-~-~~dl~~~~lVi~ 75 (205)
T TIGR01470 5 ANLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARCF-D-ADILEGAFLVIA 75 (205)
T ss_pred EEcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCCC-C-HHHhCCcEEEEE
Confidence 56899 9999999999999999999999 9887766544333333333343 32211111 2 345789999999
Q ss_pred ccCCchHHH
Q 021114 185 LISDAAQAD 193 (317)
Q Consensus 185 avP~~~~~~ 193 (317)
++.+.....
T Consensus 76 at~d~~ln~ 84 (205)
T TIGR01470 76 ATDDEELNR 84 (205)
T ss_pred CCCCHHHHH
Confidence 998875544
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0091 Score=47.70 Aligned_cols=79 Identities=13% Similarity=0.167 Sum_probs=50.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~~ 189 (317)
.++.|+|.|++|.+++..+.+. . |+.+....+.+.+... -.-.|+.. ..+++++.+. .|+-+|++|..
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G-~~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIG-KEIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTT-SEETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccC-cEECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999998665554 2 5544334333322111 01124543 3466666665 99999999998
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
...++..++.+
T Consensus 74 ~a~~~~~~~~~ 84 (96)
T PF02629_consen 74 AAQEVADELVE 84 (96)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.012 Score=56.89 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=56.7
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 47899 999999965 68999999987621000 5666554322 1267789999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++-. .++. .+++|+|++|+|++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99654 3343 12349999999986
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.04 Score=47.43 Aligned_cols=67 Identities=27% Similarity=0.291 Sum_probs=48.3
Q ss_pred EEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEccCCc
Q 021114 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISDA 189 (317)
Q Consensus 114 IGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILavP~~ 189 (317)
|.|+| .|.+|..+++.|.+. |++|+...|+.++.. . ..++..-.+...+ +.++++++|.|+.++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~-~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~ 71 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAE-D--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPP 71 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHH-H--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHST
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhcc-c--ccccccceeeehhhhhhhhhhhhcchhhhhhhhh
Confidence 67999 599999999999999 999988887755322 2 3443221222334 456788999999999853
|
... |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0098 Score=57.10 Aligned_cols=95 Identities=19% Similarity=0.189 Sum_probs=65.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC----ceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G----~~~~~~~~~~~~e~v~~AD 180 (317)
.+.+| +++.|+|.|=.+.+++..|.+. |. ++++.+|+.++..+.+...+ .... ....++ +...++|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~-~~~~~~-~~~~~~d 192 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEA-AALADL-EGLEEAD 192 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhccccccc-cccccc-ccccccC
Confidence 56678 9999999999999999999999 95 68889998766555555444 1100 001122 2222699
Q ss_pred EEEEccCCchHHH----HHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~----vl~ei~~~lk~gaiVi~~ 211 (317)
+||-+||...... .+. ...++++.++.|+
T Consensus 193 liINaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 193 LLINATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EEEECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 9999999876542 222 4556777777754
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.014 Score=56.27 Aligned_cols=77 Identities=13% Similarity=0.124 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
.+++| |++.|||-+ ..|..++.-|.+. | ..|++...+ ..++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46899 999999965 6899999999876 4 455544322 236788899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+||.++.-... +. .+.+|+|++|+|++-
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvGi 234 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVGT 234 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEecC
Confidence 99999986543 32 245789999999863
|
|
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.0094 Score=57.36 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHh----hhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~----~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
.+++| |++.|||-+ ..|..++.-|.+ . +..|.+...+ ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 47899 999999965 689999999987 5 6666654422 126788999999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||.++.-.. ++. .+++|+|++|+|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996533 333 13458999999886
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.045 Score=54.37 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=59.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--CceecCCCcCCHH----hhcCcCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~----e~v~~ADv 181 (317)
+.. ++|.|+|+|.+|..+++.|.+. |+++++.+.. ++..+...+. ++..-.+...+.+ .-++++|.
T Consensus 229 ~~~-~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPV-KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCE
Confidence 445 8999999999999999999998 9987665544 4444444443 3221012222332 23578999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|++++++....-....+...+.+..++.-+
T Consensus 301 vi~~~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 301 FIALTNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred EEECCCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 999998765433333444445455555433
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.025 Score=59.70 Aligned_cols=77 Identities=14% Similarity=0.189 Sum_probs=56.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH----hhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~----e~v~~ADvVILavP 187 (317)
++|-|+|+|.+|+.+++.|++. |+++++- +.+++..+.+++.|+..-.+..++.+ .-+++||.|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6799999999999999999999 9886544 55566677788888643222233433 23568999999999
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
+.+....+
T Consensus 474 d~~~n~~i 481 (621)
T PRK03562 474 DPQTSLQL 481 (621)
T ss_pred CHHHHHHH
Confidence 87765433
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.035 Score=51.91 Aligned_cols=65 Identities=28% Similarity=0.324 Sum_probs=41.8
Q ss_pred EEEEec-cchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHH------C--CceecCCCcCCHHhhcCcCC
Q 021114 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA------A--GFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~------~--G~~~~~~~~~~~~e~v~~AD 180 (317)
|+|||. |.+|..+|..|... | .++.+.+...++....+.+ . .... ...+|..+.+++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i--~~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKV--SITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEE--EECCchHHHhCCCC
Confidence 689999 99999999999887 6 4666555433221111111 1 1111 01346678999999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.034 Score=56.31 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.4
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|+|||. |++|..+.++|++. |+ +|+ ...+... .-.|+.. +.+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999998 77 453 3333221 1245553 56888887888999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+|+....+++++... ..-..++++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999988765 34456788888874
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.017 Score=64.23 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=50.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhc---------CCceEEEEecCCcccHHHHHHC-Cc--eecCCCcCCHHh--
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~~~~~~~~~e-- 174 (317)
+.+++|+|||.|.||...+..|.+. .+.. .+..|.+++...++..+.+... ++ ..-| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3348999999999999999999764 1000 0112555554432222223222 42 1101 335444
Q ss_pred -hcCcCCEEEEccCCchHHHHHH
Q 021114 175 -TISGSDLVLLLISDAAQADNYE 196 (317)
Q Consensus 175 -~v~~ADvVILavP~~~~~~vl~ 196 (317)
+++++|+||.++|..-+..+..
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAk 666 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAK 666 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHH
Confidence 4478999999999987766654
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.043 Score=49.64 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------cccHH---HHHHC-
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFA---EARAA- 160 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~---~A~~~- 160 (317)
..-|+. ++|.|||+|-+|..+|++|... |. ++++.++.. .+... ...+.
T Consensus 16 q~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 88 (202)
T TIGR02356 16 QQRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN 88 (202)
T ss_pred HHHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC
Confidence 356778 9999999999999999999998 86 455544331 00000 11110
Q ss_pred -Cceec--CCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 161 -GFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 161 -G~~~~--~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
.+..+ +... .+.++.++++|+||.++-.......+++...
T Consensus 89 p~v~i~~~~~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~ 133 (202)
T TIGR02356 89 SDIQVTALKERVTAENLELLINNVDLVLDCTDNFATRYLINDACV 133 (202)
T ss_pred CCCEEEEehhcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 11100 0111 1345678999999999866555556666543
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.012 Score=59.09 Aligned_cols=74 Identities=19% Similarity=0.143 Sum_probs=44.1
Q ss_pred CEEEEEeccchHHHHHH--HHHhhhhhhcCCceEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|++|.+.+. .+....+ -.|.+|++.++..+ ..+... ..+....-...+|.++++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 47999999999998766 3431100 11667766655432 222111 11111000124588899999999
Q ss_pred EEEccCC
Q 021114 182 VLLLISD 188 (317)
Q Consensus 182 VILavP~ 188 (317)
||.+++.
T Consensus 78 Vi~ai~~ 84 (423)
T cd05297 78 VINTIQV 84 (423)
T ss_pred EEEeeEe
Confidence 9999995
|
linked to 3D####ucture |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.016 Score=53.71 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC----------CcccHHH-HHHCCceec--CCCcCCH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----------GSRSFAE-ARAAGFTEE--NGTLGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----------~~~s~~~-A~~~G~~~~--~~~~~~~ 172 (317)
.+++| ++|+|.|+|++|..+|+.|.+. |.+|+...|. +...+.. ..+.|-... .....+.
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~ 99 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITN 99 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCC
Confidence 67889 9999999999999999999998 9987633333 2222222 223332110 0000122
Q ss_pred Hhhc-CcCCEEEEccCCchHH
Q 021114 173 YETI-SGSDLVLLLISDAAQA 192 (317)
Q Consensus 173 ~e~v-~~ADvVILavP~~~~~ 192 (317)
++++ .+||+++-|.+.+.+.
T Consensus 100 ~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 100 EELLELDCDILIPAALENQIT 120 (227)
T ss_pred ccceeecccEEEecCccCccC
Confidence 2222 3789999988776654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.039 Score=55.58 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=50.0
Q ss_pred ccccCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+...++ ++|.|||+|..|.+ +|+.|++. |++|.+.+.+..+..+...+.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 345677 89999999999999 89999999 99987665443333333445576531 122345667899998
Q ss_pred Ec
Q 021114 184 LL 185 (317)
Q Consensus 184 La 185 (317)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 85
|
|
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.03 Score=53.96 Aligned_cols=81 Identities=11% Similarity=0.159 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+.. +..+..|++...+ ..++++.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~--~~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKH--PDTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCc--CCCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 47899 999999965 68999999997650 0002355543221 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-.. ++. .+++|+|++|+|++-
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvGi 230 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVGT 230 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEecc
Confidence 998643 232 245789999999873
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.03 Score=54.92 Aligned_cols=91 Identities=19% Similarity=0.105 Sum_probs=53.9
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCC-c-eEEEEecCCcccHHHHHH-C--CceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
|.|||.|.+|..+++.|.+. + . +++++.|+.++..+.+.+ . .+....-...+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999988 4 3 677777765433333321 1 22110011223 56789999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+.....+++... +.|.-.+|.+.
T Consensus 75 ~gp~~~~~v~~~~i---~~g~~yvD~~~ 99 (386)
T PF03435_consen 75 AGPFFGEPVARACI---EAGVHYVDTSY 99 (386)
T ss_dssp SSGGGHHHHHHHHH---HHT-EEEESS-
T ss_pred CccchhHHHHHHHH---HhCCCeeccch
Confidence 99985555555332 23556667544
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.027 Score=55.39 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=45.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|.| +++.|||.|.||.-.+++|++. |. ++++.+|.... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 56889 9999999999999999999999 86 57888887421 111000 0011134578999998
Q ss_pred cc
Q 021114 185 LI 186 (317)
Q Consensus 185 av 186 (317)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.029 Score=54.27 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=56.5
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||-+ .+|..+|.-|.+. .+..+..|.+...+ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~--~~~~~atVtv~hs~-------------------T~~l~~~~~~ADIvVs 214 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK--GPGANATVTIVHTR-------------------SKNLARHCQRADILIV 214 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc--ccCCCCEEEEecCC-------------------CcCHHHHHhhCCEEEE
Confidence 47899 999999954 7899999999865 00002456554321 1367888999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+.+|+|++|+|++
T Consensus 215 AvGkp~~---i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 215 AAGVPNL---VK--PEWIKPGATVIDVG 237 (297)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEecC
Confidence 9865432 32 23578999999976
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.039 Score=54.31 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=58.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCH-HhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDI-YETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~-~e~v~~ADvVILav 186 (317)
+| ++|+|+|.|-+|.--.|.++.. |.+|+... ++++..+.|++.|...- +....+. +++-+.+|+|+.++
T Consensus 166 pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~-~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 166 PG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAIT-RSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEe-CChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECC
Confidence 46 8999999998888888888888 98876544 44556778898886421 1111122 22333399999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+ ... +++..+.|+++-.++.+
T Consensus 238 ~-~~~---~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 238 G-PAT---LEPSLKALRRGGTLVLV 258 (339)
T ss_pred C-hhh---HHHHHHHHhcCCEEEEE
Confidence 9 333 34444455665555433
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.036 Score=53.99 Aligned_cols=65 Identities=14% Similarity=0.094 Sum_probs=40.6
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCcc--cHHHHHH--C-------CceecCCCcCCH
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR--SFAEARA--A-------GFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~~--s~~~A~~--~-------G~~~~~~~~~~~ 172 (317)
+||+|||. |.+|.++|..|... |+ ++.+.+..... ....+.+ . .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 68999999 99999999999876 44 45444442111 1111111 1 1111 1345
Q ss_pred HhhcCcCCEEEEcc
Q 021114 173 YETISGSDLVLLLI 186 (317)
Q Consensus 173 ~e~v~~ADvVILav 186 (317)
.+.+++||+||++.
T Consensus 73 ~~~~~daDivvita 86 (322)
T cd01338 73 NVAFKDADWALLVG 86 (322)
T ss_pred HHHhCCCCEEEEeC
Confidence 67889999999975
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.06 Score=48.53 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=50.3
Q ss_pred EEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccCC
Q 021114 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (317)
Q Consensus 114 IGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILavP~ 188 (317)
|.|+|. |.+|+++++.|.+. +++|.+..|+..+ ..+...+.|+..-..... ++.++++++|.|+++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689994 99999999999998 9998888877532 234445567542112222 455689999999999994
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.028 Score=53.65 Aligned_cols=78 Identities=17% Similarity=0.098 Sum_probs=50.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCC---cccHHHHHHC---C--ceecCCCcC---CHH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~~~~~~---~~~ 173 (317)
..++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+.+. + ......... +.+
T Consensus 122 ~~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 194 (289)
T PRK12548 122 VDVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLK 194 (289)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHH
Confidence 35778 9999999999999999999988 985 87887764 2222222221 1 000000011 233
Q ss_pred hhcCcCCEEEEccCCch
Q 021114 174 ETISGSDLVLLLISDAA 190 (317)
Q Consensus 174 e~v~~ADvVILavP~~~ 190 (317)
+.++++|+||.+||...
T Consensus 195 ~~~~~~DilINaTp~Gm 211 (289)
T PRK12548 195 AEIASSDILVNATLVGM 211 (289)
T ss_pred hhhccCCEEEEeCCCCC
Confidence 45678899999999764
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.033 Score=56.21 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc----HHHHHHCCceecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s----~~~A~~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
..+.| ++|+|+|+|..|.++|+.|++. |++|.+.++..... .+...+.|+.... -....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCCE
Confidence 55668 9999999999999999999999 99887666443211 1234556764311 1123455688999
Q ss_pred EEEc
Q 021114 182 VLLL 185 (317)
Q Consensus 182 VILa 185 (317)
||..
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 9986
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.19 Score=49.51 Aligned_cols=155 Identities=13% Similarity=0.051 Sum_probs=84.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHH-HHHCCceecCCCcC--CHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAE-ARAAGFTEENGTLG--DIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~-A~~~G~~~~~~~~~--~~~e~v~~ADvVILav 186 (317)
++|||+| .|..|+.+.+.|.+. .+-+. +.+.....+. =+. ..-.|... .... ......+++|+++.+.
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~----~f~~~~~~~~AS~rSa-G~~~~~f~~~~~--~v~~~~~~~~~~~~~Divf~~a 74 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER----HFPFEELVLLASARSA-GKKYIEFGGKSI--GVPEDAADEFVFSDVDIVFFAA 74 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc----CCCcceEEEEeccccc-CCccccccCccc--cCccccccccccccCCEEEEeC
Confidence 7899998 799999999999885 11222 2222222111 011 11111110 0011 1123456899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+.....++.++.. +.|++|+|.++.- +. -+++..| -|--.... +...-+ .| .||+..
T Consensus 75 g~~~s~~~~p~~~---~~G~~VIdnsSa~----Rm-----~~DVPLV--VPeVN~~~---l~~~~~----rg--~Iianp 131 (334)
T COG0136 75 GGSVSKEVEPKAA---EAGCVVIDNSSAF----RM-----DPDVPLV--VPEVNPEH---LIDYQK----RG--FIIANP 131 (334)
T ss_pred chHHHHHHHHHHH---HcCCEEEeCCccc----cc-----CCCCCEe--cCCcCHHH---HHhhhh----CC--CEEECC
Confidence 9877766776655 4689999887741 11 1233333 33111111 111110 22 455555
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcEEecCchh
Q 021114 267 QDVDGRATNVALGWSVALGSPFTFATTLEQ 296 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~~~tT~~~ 296 (317)
...+-..+-..+-|.+..|-.++..+|++.
T Consensus 132 NCst~~l~~aL~PL~~~~~i~~v~VsTyQA 161 (334)
T COG0136 132 NCSTIQLVLALKPLHDAFGIKRVVVSTYQA 161 (334)
T ss_pred ChHHHHHHHHHHHHHhhcCceEEEEEEeeh
Confidence 555555556667777878888888888753
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.03 Score=53.70 Aligned_cols=79 Identities=15% Similarity=0.133 Sum_probs=51.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCc---ccHHHHHHCCcee-cCCCcCC------HHh
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTE-ENGTLGD------IYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~---~s~~~A~~~G~~~-~~~~~~~------~~e 174 (317)
.+++| +++.|||.|-.+.+++..|... |. ++.+.+|..+ +..+.+.+.+... ......+ +++
T Consensus 120 ~~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~ 192 (288)
T PRK12749 120 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE 192 (288)
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh
Confidence 35788 9999999999999999999887 86 6778887632 3333333221100 0000112 234
Q ss_pred hcCcCCEEEEccCCchH
Q 021114 175 TISGSDLVLLLISDAAQ 191 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~ 191 (317)
.+.++|+||.++|....
T Consensus 193 ~~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 193 ALASADILTNGTKVGMK 209 (288)
T ss_pred hcccCCEEEECCCCCCC
Confidence 56789999999998643
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.075 Score=51.78 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=55.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
.||+||| .|-.|.-+.+.|... ..+++. ...... . +. ..+.+++++++|++|+++|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~~-~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPDR-R--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEeccc-c--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 799999999999876 123432 222211 1 22 1255677789999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCc
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
..++.+++. +.|+.|+|.++.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad 82 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA 82 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH
Confidence 777776653 368889988763
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.061 Score=53.62 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH----HHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~----~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++++ +++.|||.|.+|.++|+.|.+. |++|++.++...... +...+.|.... .....++...+.|+|
T Consensus 2 ~~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~d~v 72 (450)
T PRK14106 2 ELKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELV--LGEYPEEFLEGVDLV 72 (450)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEE--eCCcchhHhhcCCEE
Confidence 4678 9999999999999999999999 999877766532222 22223454321 012233556789999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|.++-.
T Consensus 73 v~~~g~ 78 (450)
T PRK14106 73 VVSPGV 78 (450)
T ss_pred EECCCC
Confidence 997643
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.064 Score=43.59 Aligned_cols=82 Identities=18% Similarity=0.223 Sum_probs=56.6
Q ss_pred chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HH
Q 021114 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY 195 (317)
Q Consensus 121 ~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl 195 (317)
+-+-.+++.|++. |.+|.+.+.. -... .... .++.. ..+++++++.+|+||++++-....+ -+
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~-v~~~-~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~ 84 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPY-VDEE-EIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDW 84 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TT-SHHH-HHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCc-cChH-HHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCH
Confidence 5567788888888 9987655433 2222 2222 35553 4588999999999999999888877 45
Q ss_pred HHHHhcCCCCcEEEEecCc
Q 021114 196 EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 196 ~ei~~~lk~gaiVi~~~Gv 214 (317)
+++...|+++.+|+|..++
T Consensus 85 ~~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 85 EEIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHHSCSSEEEEESSST
T ss_pred HHHHHhcCCCCEEEECccc
Confidence 6888889889999998875
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.049 Score=52.76 Aligned_cols=68 Identities=19% Similarity=0.171 Sum_probs=41.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH----CCceec-CCC-cCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-NGT-LGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-~~~-~~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... |. ++++.+...+.....+.+ ..+... .-. ..+.++ +++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEE
Confidence 6999999999999999999877 65 455555433222222221 101100 001 245655 89999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.17 Score=48.68 Aligned_cols=95 Identities=21% Similarity=0.148 Sum_probs=63.4
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC--CcccHHHHHHCCceecCCCcCCHHh--hcCcCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~G~~~~~~~~~~~~e--~v~~ADvVI 183 (317)
.+| .++.|+|.|.+|...++.++.. |.+|++..++ +++..+.+++.|...-+....+..+ .....|+||
T Consensus 171 ~~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vi 243 (355)
T cd08230 171 WNP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLII 243 (355)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEE
Confidence 368 9999999999999999999998 9887665553 3455677888887531111111111 224579999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
-++.... .+++....++++..++.++
T Consensus 244 d~~g~~~---~~~~~~~~l~~~G~~v~~G 269 (355)
T cd08230 244 EATGVPP---LAFEALPALAPNGVVILFG 269 (355)
T ss_pred ECcCCHH---HHHHHHHHccCCcEEEEEe
Confidence 9987432 4556667777777666443
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.52 Score=47.59 Aligned_cols=168 Identities=19% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccH--HHHHHC--Cceec----------------CCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF--AEARAA--GFTEE----------------NGTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~--~~A~~~--G~~~~----------------~~~~ 169 (317)
|.+|-|+|.|..+--+|..+++. +. ++=+..|.+.++. -.+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 46899999999999999999986 43 4544555543332 222222 21110 1124
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHH----HhcCCCCcEEEEecCch----hhhhhhcccCCCCCccEEE-------
Q 021114 170 GDIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGFL----LGHLQSIGLDFPKNIGVIA------- 234 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~~vl~ei----~~~lk~gaiVi~~~Gv~----l~~~~~~~~~l~~~i~vV~------- 234 (317)
.+.+++..+=|.+|||||-++..++++++ +..+| ++|.++..+. +..+-. ....++.||.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk--~iVLvSPtfGS~~lv~~~l~---~~~~~~EVISFStY~gd 149 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVK--SIVLVSPTFGSHLLVKGFLN---DLGPDAEVISFSTYYGD 149 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCC--EEEEECcccchHHHHHHHHH---hcCCCceEEEeeccccc
Confidence 56777888889999999999999999854 34443 3555665441 222211 2233677775
Q ss_pred ---eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE-EecCchhhhh
Q 021114 235 ---VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT-FATTLEQEYK 299 (317)
Q Consensus 235 ---vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~-~~tT~~~e~~ 299 (317)
.+...|-...-...++ ..++... +.+...++....++..+|-.-. +.+-++.|.+
T Consensus 150 Tr~~d~~~~~~vlt~~vK~---------kiYigSt-~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~r 208 (429)
T PF10100_consen 150 TRWSDGEQPNRVLTTAVKK---------KIYIGST-HSNSPELDKLCRLLAQLGIQLEVMDNPLEAESR 208 (429)
T ss_pred ceeccCCCcceehhhhhhc---------eEEEEeC-CCCChHHHHHHHHHHHcCCeEEEeCChHhhhhc
Confidence 4444444444334432 3434444 4556788888999999997654 5555666655
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.085 Score=51.46 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=41.5
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc--ccHHHHHH--CCc-ee-cC-CCcCCHHhhc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS--RSFAEARA--AGF-TE-EN-GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~--~s~~~A~~--~G~-~~-~~-~~~~~~~e~v 176 (317)
.||+|||. |.+|.++|..|... |+ ++++.+.... .....+.+ ... .. .+ ....+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 4554444321 11222221 111 00 00 0013556789
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+||++.
T Consensus 78 ~daDvVVitA 87 (323)
T TIGR01759 78 KDVDAALLVG 87 (323)
T ss_pred CCCCEEEEeC
Confidence 9999999975
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.091 Score=51.22 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=54.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
.+|+||| .|..|..+.+.|.+. . +++. ....++.. . .. +.++..+++|+||+++|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~-~~~s~~~~------~-~~-------~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELL-SIPEAKRK------D-AA-------ARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEE-EEecCCCC------c-cc-------CchhhhcCCCEEEECCCHH
Confidence 6899999 899999999998876 3 2332 22221111 0 11 3345667899999999998
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
...++..++.+ .|+.|+|.++
T Consensus 62 ~s~~~~~~~~~---~g~~VIDlSa 82 (313)
T PRK11863 62 AAREAVALIDN---PATRVIDAST 82 (313)
T ss_pred HHHHHHHHHHh---CCCEEEECCh
Confidence 77777776643 5888998876
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.081 Score=51.88 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=56.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (317)
...|++ ++|.|||+|-+|..+|+.|... |+ ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 467788 9999999999999999999998 87 455444421 0000 01111
Q ss_pred --CCceec----CCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhc
Q 021114 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (317)
Q Consensus 160 --~G~~~~----~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~ 201 (317)
.++..+ +.+..+++++++++|+||.++-+.....+++++...
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~ 139 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQK 139 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 122110 111134677899999999999555444466765543
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.055 Score=52.40 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=56.0
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+ ..|..+|.-|.+.... .+..|.+...+ ..++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~~--~~aTVtvchs~-------------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKADG--GNATVTVCHSR-------------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCccC--CCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 37899 999999965 6899999998753000 02456553221 2367889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++--.. ++. .+++|+|++|+|++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886543 332 24578999999976
|
|
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.068 Score=52.21 Aligned_cols=22 Identities=18% Similarity=0.247 Sum_probs=20.0
Q ss_pred CEEEEEec-cchHHHHHHHHHhh
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
.||+|||. |.+|.++|..|...
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~ 27 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASG 27 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhh
Confidence 79999998 99999999988765
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.046 Score=55.50 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=48.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.+ ++|.|+|+|-.|.++|+.|++. |.+|.+.+++.....+...+.|+.... -....+.+.++|+||..
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADIS--TAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEEe--CCCchhHhcCCCEEEeC
Confidence 45677 9999999999999999999999 998766554432222223445765310 11234556789999885
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.073 Score=53.74 Aligned_cols=70 Identities=27% Similarity=0.188 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc----cHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.++| ++|.|||.|.+|.++|..|++. |++|++.++.+.. ..+..++.|+... ..+..+...++|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 4678 9999999999999999999999 9998777654321 1233455676531 11111244579999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9986
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.092 Score=50.36 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=41.3
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--Ccee-cC--CC-cCCHHhhcCcCCEEEEc
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-EN--GT-LGDIYETISGSDLVLLL 185 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~~--~~-~~~~~e~v~~ADvVILa 185 (317)
|+|||.|.+|.++|..|... |. ++++.+...+.....+.+. .... .. .. ..+ .+.+++||+||++
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit 73 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVIT 73 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence 68999999999999999887 74 5555554433222222211 0000 00 00 123 4688999999998
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
...
T Consensus 74 ag~ 76 (300)
T cd00300 74 AGA 76 (300)
T ss_pred CCC
Confidence 753
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.041 Score=53.69 Aligned_cols=74 Identities=18% Similarity=0.120 Sum_probs=45.1
Q ss_pred ccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH----C-CceecCCCc-CCHHhh
Q 021114 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----A-GFTEENGTL-GDIYET 175 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~-G~~~~~~~~-~~~~e~ 175 (317)
+..++. +||+|||. |.+|.++|..|... +. ++++.+.. .....+.+ . .....+.+. .+..+.
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~--~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIV--GAPGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecC--CCcccccchhhcCcCceEEEecCCCchHHH
Confidence 356777 99999999 99999999999865 43 55555542 11111111 0 111101111 223678
Q ss_pred cCcCCEEEEccC
Q 021114 176 ISGSDLVLLLIS 187 (317)
Q Consensus 176 v~~ADvVILavP 187 (317)
++++|+||++.-
T Consensus 74 l~gaDvVVitaG 85 (321)
T PTZ00325 74 LRGADLVLICAG 85 (321)
T ss_pred hCCCCEEEECCC
Confidence 999999998754
|
|
| >KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.11 Score=51.22 Aligned_cols=92 Identities=16% Similarity=0.134 Sum_probs=66.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC--CEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~A--DvVILavP~ 188 (317)
-++||+|+|.|+.-.+++|... .+ +++.|+ ++.++-+.+.+.|.+.++.. -...++.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4799999999999999999775 22 266554 33444445567778888831 23478999999876 999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021114 189 AAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi 209 (317)
.++.++.-.++.+=|+ +++
T Consensus 83 ~qH~evv~l~l~~~K~--VL~ 101 (351)
T KOG2741|consen 83 PQHYEVVMLALNKGKH--VLC 101 (351)
T ss_pred ccHHHHHHHHHHcCCc--EEe
Confidence 9998877655554333 444
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.081 Score=51.53 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhh-hhhhcCCceEEEEecCCcccHHHHHHCCcee------cC-CCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------EN-GTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~-~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~------~~-~~~~~~~e~v~~ADvV 182 (317)
.||+|||. |.+|.+++..|... +..-..+.++++.++........+....+.+ .+ ....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 57999998 99999999999875 0000002356555553211101111111110 00 0024667889999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9864
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.077 Score=51.90 Aligned_cols=99 Identities=16% Similarity=0.175 Sum_probs=53.5
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hh-hhcCCceEEEEecCCc-------ccHH----HHHHCCceec---CCCcCCHH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGS-------RSFA----EARAAGFTEE---NGTLGDIY 173 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~-~~~~G~~Vivg~r~~~-------~s~~----~A~~~G~~~~---~~~~~~~~ 173 (317)
.+|+|||+|.||..+++.|++. +. ..+.+++++...+++. -..+ .+.+.|.... .....+++
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 5799999999999999998764 11 1122455433333210 0111 1222232110 00123778
Q ss_pred hhc--CcCCEEEEccCCchHH-HH-HHHHHhcCCCCcEEEE
Q 021114 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (317)
Q Consensus 174 e~v--~~ADvVILavP~~~~~-~v-l~ei~~~lk~gaiVi~ 210 (317)
+++ .+.|+|+.++|+..+. +. .+-+...|+.|.-|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 887 4689999999986542 22 2223344556666554
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.17 Score=44.15 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.1
Q ss_pred CCCCEEEEEe--ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--c----cH----HHHHHCC--ceecCCCcCCHHh
Q 021114 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--R----SF----AEARAAG--FTEENGTLGDIYE 174 (317)
Q Consensus 109 ~GikkIGIIG--~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~----s~----~~A~~~G--~~~~~~~~~~~~e 174 (317)
+| +||++|| .+++..|++..+... |+++.+....+- + -. +.+.+.| +.. ..+++|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999999 998665544331 1 12 1223334 232 469999
Q ss_pred hcCcCCEEEEccCC
Q 021114 175 TISGSDLVLLLISD 188 (317)
Q Consensus 175 ~v~~ADvVILavP~ 188 (317)
+++++|+|..-.-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999998876655
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.069 Score=52.05 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=39.8
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCcccHHHHHHCCceec-------CCCcCCHHhhcC
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-------NGTLGDIYETIS 177 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-------~~~~~~~~e~v~ 177 (317)
+|+|||. |.+|.++|..|... ++ ++++.+.........+......+. .....+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 5899999 99999999999875 43 354554422110011111111100 000124467899
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
+||+||++.-
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999753
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.19 Score=49.03 Aligned_cols=94 Identities=15% Similarity=0.203 Sum_probs=62.7
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcC-CHH----hhc--CcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~-~~~----e~v--~~A 179 (317)
..+ .++.|+|.|.||.-.++.++.. |...++..+.++..++.|++ .|......... +.. +.- ..+
T Consensus 167 ~~~-~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~ 239 (350)
T COG1063 167 RPG-GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGA 239 (350)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCC
Confidence 344 5899999999999999988888 87655666776777888888 44331000001 111 222 359
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|++|-++- ....+++....++++-.+..+
T Consensus 240 D~vie~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 240 DVVIEAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred CEEEECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 99999999 334566667777777766544
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.065 Score=53.88 Aligned_cols=67 Identities=30% Similarity=0.296 Sum_probs=46.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| ++|.|||+|-.|.+.|+.|++. |++|.+.++... ......+.|+... ..+. +-+.++|+||.
T Consensus 5 ~~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~-~~~~l~~~g~~~~---~~~~-~~~~~~d~vv~ 71 (460)
T PRK01390 5 TGFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPA-SRAKAAAAGITTA---DLRT-ADWSGFAALVL 71 (460)
T ss_pred cccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChh-hHHHHHhcCcccc---CCCh-hHHcCCCEEEE
Confidence 45788 9999999999999999999999 998765554322 2223345676531 1122 34578999886
|
|
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.11 Score=53.02 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| +++.|+|+|..|.+.++.|++. |.+|++.+++ ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34568 9999999999999999999998 9988775543 3334445566764311 12334567889999986
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 4
|
|
| >COG2344 AT-rich DNA-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.04 Score=50.32 Aligned_cols=80 Identities=9% Similarity=0.219 Sum_probs=53.7
Q ss_pred CEEEEEeccchHHHHHHHH--HhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNL--RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~L--r~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.++.|||.|++|.|++..- .+. |++++-..|.+++..-. .-.++.. ...+++++.++ +.|+.||++|
T Consensus 85 tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~-~~~~v~V--~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 85 TNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGT-KIGDVPV--YDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred eeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCc-ccCCeee--echHHHHHHHHhcCccEEEEEcc
Confidence 5799999999999998643 334 78887777776542211 1123332 12456777777 7899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
-....++.+.+..
T Consensus 156 a~~AQ~vad~Lv~ 168 (211)
T COG2344 156 AEHAQEVADRLVK 168 (211)
T ss_pred HHHHHHHHHHHHH
Confidence 8776666665543
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.24 Score=47.40 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=62.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC---cCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~---~ADvVI 183 (317)
.+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|...- +....+..+... ..|+|+
T Consensus 168 ~~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 168 LQG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 368 9999999999999999999998 98433444444556778888886421 111112333332 379999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
=++... ..++.....++++..++..+
T Consensus 241 d~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 888753 23445556677777766554
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.12 Score=49.70 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=60.6
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
| ++|+|||--.=-..+++.|.+. |++|.+..-+++. . ...|+.. ..+.+++++++|+|++.+|..
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~---~-~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD---H-GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc---c-ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888888999999999 9988764333221 1 2246653 446788999999999999873
Q ss_pred hHH----------H-HH-HHHHhcCCCCcEEE
Q 021114 190 AQA----------D-NY-EKIFSCMKPNSILG 209 (317)
Q Consensus 190 ~~~----------~-vl-~ei~~~lk~gaiVi 209 (317)
... + .+ ++.+..|++++++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 210 1 12 36788999998555
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.13 Score=48.40 Aligned_cols=106 Identities=15% Similarity=0.189 Sum_probs=75.6
Q ss_pred HCCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcc-cCCCCCccEEEec
Q 021114 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIG-LDFPKNIGVIAVC 236 (317)
Q Consensus 159 ~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~-~~l~~~i~vV~vh 236 (317)
+.|+.. .+|-.|+++++|+|+.=+|-.. +.++++++.+.+++|++|++++-+....+...- ..-+++.++-..|
T Consensus 124 d~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed~gredlnvtsyh 199 (343)
T COG4074 124 DMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYH 199 (343)
T ss_pred HceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccC
Confidence 467664 4677899999999999998765 567999999999999999988876432221100 0224688999999
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHH
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~a 283 (317)
| +..+++ +| -- +..++..++++++.+-+|-+.
T Consensus 200 p-g~vpem-----kg-------qv--yiaegyaseeavn~lyelg~k 231 (343)
T COG4074 200 P-GTVPEM-----KG-------QV--YIAEGYASEEAVNALYELGEK 231 (343)
T ss_pred C-CCCccc-----cC-------cE--EEecccccHHHHHHHHHHHHH
Confidence 9 555664 23 22 346778889998887776554
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.045 Score=53.65 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=45.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
=+| .+++|+|+|..|.+.+++.|.+ |..-+++.|-+++..+.|++.|+++
T Consensus 191 ~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 191 EPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred CCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 357 8999999999999999999999 9877889999888899999999985
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.077 Score=52.93 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=53.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecC-CCcCCHH-hhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~-~~~~~~~-e~v~~ADvVILav 186 (317)
+||+||| .|..|..+.+.|.+. .++++....+..+ +...... ......+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 7999999 599999999988765 1445544333211 1111110 0000000 0011222 2258899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....++.+. |+.|+.|+|.++.
T Consensus 113 p~~~s~~i~~~----~~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKA----LPKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHH----HhCCCEEEEcCch
Confidence 98755555555 3457889987764
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.14 Score=48.54 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=58.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| +++.|+|.|.+|...++.++.. |.++++..+..+..++.+.+..+.+ ..++.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 57 8999999999999999999988 9876555555554455555444331 111122458999998885
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.. .+++.++.++++..++..+
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~G 231 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLAG 231 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEEe
Confidence 43 3455566677777666544
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.14 Score=50.38 Aligned_cols=86 Identities=14% Similarity=0.096 Sum_probs=57.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC--
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-- 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~-- 188 (317)
.+|||||+ .+|...+..+++. +.+.+++...+++ ++..+.|.+.|+.. +.+.+|++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999988876 0035654444443 44556777778753 67999999888888888753
Q ss_pred --chHHHHHHHHHhcCCCCcEEE
Q 021114 189 --AAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 189 --~~~~~vl~ei~~~lk~gaiVi 209 (317)
..+.++..+. |+.|+-|+
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 4555655543 34555544
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.096 Score=48.10 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
..-|+. ++|.|||+|-+|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 356778 9999999999999999999998
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.098 Score=51.49 Aligned_cols=87 Identities=15% Similarity=0.208 Sum_probs=55.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEE-EEec-CCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VGLR-KGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vi-vg~r-~~~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++|+||| .|..|..+.+.|.+. ++ ++. +..+ ...+.... .| ...+ ..+. +.+.++|+||
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~~v~---~~~~-~~~~~~D~vf 74 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDYTVE---ELTE-DSFDGVDIAL 74 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCceeEEE---eCCH-HHHcCCCEEE
Confidence 7899999 799999999999876 55 221 2222 11111111 12 1110 1122 4458999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++|.....++..+.. +.|+.|+|.++.
T Consensus 75 ~a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 75 FSAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred ECCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 9999987777776543 368899988763
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.082 Score=51.50 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=54.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce---EEEEecCCcccHHHHHHCCceecCCCcCCHH-hhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~-e~v~~ADvVILav 186 (317)
++|+||| .|..|..+.+.|.+. |+. +....+..+...... -.|... ...+.. +.++++|+||+++
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~-~~g~~i---~v~d~~~~~~~~vDvVf~A~ 71 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS-FKGKEL---KVEDLTTFDFSGVDIALFSA 71 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee-eCCcee---EEeeCCHHHHcCCCEEEECC
Confidence 7999999 899999999999886 653 333332211110000 011110 011211 2347899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|-....++.+++. +.|+.|+|.++
T Consensus 72 g~g~s~~~~~~~~---~~G~~VIDlS~ 95 (334)
T PRK14874 72 GGSVSKKYAPKAA---AAGAVVIDNSS 95 (334)
T ss_pred ChHHHHHHHHHHH---hCCCEEEECCc
Confidence 9887777776654 35788887766
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.13 Score=49.52 Aligned_cols=69 Identities=26% Similarity=0.349 Sum_probs=41.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--cccHHHHH-------HCCceecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~-------~~G~~~~~~~~~~~~e~v~~A 179 (317)
|||+|||. |.+|..++..|... |+ ++++.++.. +.....+. ..+....-....+ .+.+++|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d-~~~l~~a 73 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSD-LSDVAGS 73 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCC-HHHhCCC
Confidence 68999997 99999999999987 76 365555532 11111110 1111000000124 4559999
Q ss_pred CEEEEccC
Q 021114 180 DLVLLLIS 187 (317)
Q Consensus 180 DvVILavP 187 (317)
|+||++..
T Consensus 74 DiViitag 81 (309)
T cd05294 74 DIVIITAG 81 (309)
T ss_pred CEEEEecC
Confidence 99999985
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.085 Score=53.18 Aligned_cols=92 Identities=15% Similarity=0.189 Sum_probs=50.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhh----hhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~----~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILa 185 (317)
.+|||||+|.+|..+++.|.+..+ ..|.++++....+++.. .+....... .....+.++++. +.|+|+.+
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~---~~~~~~~~~-~~~~~d~~~ll~d~~iDvVve~ 79 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE---KDRGVDLPG-ILLTTDPEELVNDPDIDIVVEL 79 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh---hccCCCCcc-cceeCCHHHHhhCCCCCEEEEC
Confidence 579999999999999998866411 12224454333333221 111111100 011457888885 57999999
Q ss_pred cCCch-HHHHHHHHHhcCCCCcEEEE
Q 021114 186 ISDAA-QADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 186 vP~~~-~~~vl~ei~~~lk~gaiVi~ 210 (317)
++... ..+.+. ..|+.|+-|+.
T Consensus 80 tg~~~~~~~~~~---~aL~~GkhVVt 102 (426)
T PRK06349 80 MGGIEPARELIL---KALEAGKHVVT 102 (426)
T ss_pred CCCchHHHHHHH---HHHHCCCeEEE
Confidence 87643 223332 33455665553
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.18 Score=46.41 Aligned_cols=82 Identities=16% Similarity=0.033 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-.|+| +++.|||.|..|..=++.|.+. |-+|++....-.+... ...+.++..-+ ...+.++.. .+++||
T Consensus 7 ~~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvi 77 (210)
T COG1648 7 FLDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVI 77 (210)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEE
Confidence 467899 9999999999999999999988 9887766555423333 33333322101 123444444 499999
Q ss_pred EccCCchHHHHH
Q 021114 184 LLISDAAQADNY 195 (317)
Q Consensus 184 LavP~~~~~~vl 195 (317)
.+|.+....+-+
T Consensus 78 aAt~d~~ln~~i 89 (210)
T COG1648 78 AATDDEELNERI 89 (210)
T ss_pred EeCCCHHHHHHH
Confidence 999998876533
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.086 Score=51.75 Aligned_cols=90 Identities=21% Similarity=0.154 Sum_probs=52.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCce--EEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~--Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+||| .|..|..+.+.|.+. ++. .+....+.+..-+.-.-.| ... ...+.++ ++++|+|++++
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~~~~~~l~~---~~~~~~~-~~~vD~vFla~ 74 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVPFAGKNLRV---REVDSFD-FSQVQLAFFAA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeeccCCcceEE---eeCChHH-hcCCCEEEEcC
Confidence 6899999 599999999999975 442 1122222111000000111 110 0113333 48899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....++.++... .|..++|.+|-
T Consensus 75 p~~~s~~~v~~~~~---~G~~VIDlS~~ 99 (336)
T PRK05671 75 GAAVSRSFAEKARA---AGCSVIDLSGA 99 (336)
T ss_pred CHHHHHHHHHHHHH---CCCeEEECchh
Confidence 97655555555543 58889987763
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.15 Score=46.15 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=25.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. ++|.|||+|.+|..++++|...
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~ 43 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS 43 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.23 Score=46.28 Aligned_cols=93 Identities=17% Similarity=0.125 Sum_probs=56.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc------CcCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v------~~ADvV 182 (317)
+| .++.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|....- ...+..+.+ ...|+|
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i-~~~~~~~~~~~~~~~~g~d~v 191 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAADPSPDRRELALSFGATALA-EPEVLAERQGGLQNGRGVDVA 191 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCcEec-CchhhHHHHHHHhCCCCCCEE
Confidence 68 9999999999999999999998 986334445555566778888864200 001111111 246777
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+-++.... .+++....++++..++..+
T Consensus 192 id~~G~~~---~~~~~~~~l~~~G~iv~~G 218 (280)
T TIGR03366 192 LEFSGATA---AVRACLESLDVGGTAVLAG 218 (280)
T ss_pred EECCCChH---HHHHHHHHhcCCCEEEEec
Confidence 77664322 3344445555655555433
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.1 Score=51.56 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=40.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CC--ceec-CCCc-CCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEE-NGTL-GDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~-~~~~-~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... +. ++.+.+.........+.+ .. +... .-.. .+.+ .+++||+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEE
Confidence 6999999999999999999877 65 454444432222222211 10 1100 0001 2444 489999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 111 itA 113 (350)
T PLN02602 111 VTA 113 (350)
T ss_pred ECC
Confidence 984
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=47.27 Aligned_cols=94 Identities=20% Similarity=0.249 Sum_probs=57.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~v~~ADvVILavP 187 (317)
|||+||| .|..|..+++-+.+. |++|+...|..++... ..+.+.-+.. .....+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~---~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAA---RQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhccc---cccceeecccccChhhhHhhhcCCceEEEecc
Confidence 7899999 799999999999999 9998777776443211 1233111111 2234467889999999864
Q ss_pred Cc----hH--HHHHHHHHhcCCC-Cc-EEEEecCc
Q 021114 188 DA----AQ--ADNYEKIFSCMKP-NS-ILGLSHGF 214 (317)
Q Consensus 188 ~~----~~--~~vl~ei~~~lk~-ga-iVi~~~Gv 214 (317)
.. .. .+..+.+...++. +. -+++++|.
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA 106 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA 106 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence 43 21 1223334455544 22 25566665
|
|
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.025 Score=56.37 Aligned_cols=99 Identities=18% Similarity=0.166 Sum_probs=72.4
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
...-..| .++|+||+|..|.++++..+.+ |+.| +.+|.- .+-.+.+.-.+.+ .++.|+.-++|-+
T Consensus 172 g~~~~~G-~~~g~~g~gr~g~av~~~A~af------g~~~-ifydp~~~~g~~~~lg~~rV------ytlqd~~~~sd~~ 237 (435)
T KOG0067|consen 172 GLARIRG-PTLGLIGFGRTGQAVALRAKAF------GFVV-IFYDPYLIDGIDKSLGLQRV------YTLQDLLYQSDCV 237 (435)
T ss_pred ccccccc-cceeeeccccccceehhhhhcc------ccee-eeecchhhhhhhhhccccee------cccchhhhhccce
Confidence 3456677 8999999999999999999999 9865 455542 2233444333343 3688889999999
Q ss_pred EEccCCchHHH-HHHH-HHhcCCCCcEEEE-ecCchh
Q 021114 183 LLLISDAAQAD-NYEK-IFSCMKPNSILGL-SHGFLL 216 (317)
Q Consensus 183 ILavP~~~~~~-vl~e-i~~~lk~gaiVi~-~~Gv~l 216 (317)
.+++....... +++. -...|++|..++. +.|..+
T Consensus 238 S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglv 274 (435)
T KOG0067|consen 238 SLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLV 274 (435)
T ss_pred eeecccCcccccccccccceeecccceEeeecccccC
Confidence 99999998875 6653 4567999998774 456543
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.17 Score=50.42 Aligned_cols=71 Identities=20% Similarity=0.129 Sum_probs=47.4
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhcCc-CCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETISG-SDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~v~~-ADvV 182 (317)
+++| +++.|+|.|.+|.+.|+.|++. |++|++.++.... ..+...+.|+.... -.+..+++.+ .|+|
T Consensus 2 ~~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~v 72 (447)
T PRK02472 2 EYQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLM 72 (447)
T ss_pred CcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEE
Confidence 4678 9999999999999999999999 9998776543221 12333445654210 0233344444 8998
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|...
T Consensus 73 V~s~ 76 (447)
T PRK02472 73 VKNP 76 (447)
T ss_pred EECC
Confidence 8854
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.13 Score=50.17 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=19.5
Q ss_pred EEEEEec-cchHHHHHHHHHhh
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
||+|||. |.+|.++|..|...
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~ 23 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG 23 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC
Confidence 7999999 99999999999875
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.19 Score=45.44 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~ 147 (317)
..-|+. .+|.|||+|.+|..++++|... |.. +.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 466777 9999999999999999999998 774 44443
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.078 Score=44.44 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r 148 (317)
++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD~ 34 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVDD 34 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEES
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecCC
Confidence 7899999999999999999998 87 4555543
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.26 Score=48.71 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=55.4
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccH-HHHH-HCCceecCCCcCCHHhh-cCcCCEEEE
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSF-AEAR-AAGFTEENGTLGDIYET-ISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~-~~A~-~~G~~~~~~~~~~~~e~-v~~ADvVIL 184 (317)
++||+||| .|--|.-+.+.|... ...++.....+. .+.. +... ..|..+......+.+++ ..+||+|||
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 788898888888765 134543333221 1111 0000 11221100011233443 456999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+|...-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999988888877654 4556888776
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.14 Score=52.18 Aligned_cols=73 Identities=25% Similarity=0.227 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHC--CceecCCCcC-CHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~--G~~~~~~~~~-~~~e~v~~ADvV 182 (317)
++.+ ++|.|||+|..|.++|+.|++. |++|.+.+.... +..+...+. |+... .. ...+.+.++|+|
T Consensus 4 ~~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~v 73 (498)
T PRK02006 4 DLQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLV 73 (498)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEE
Confidence 3567 9999999999999999999999 998865554322 122223333 43321 11 234567789999
Q ss_pred EEc--cCCc
Q 021114 183 LLL--ISDA 189 (317)
Q Consensus 183 ILa--vP~~ 189 (317)
|.. +|+.
T Consensus 74 v~sp~I~~~ 82 (498)
T PRK02006 74 ALSPGLSPL 82 (498)
T ss_pred EECCCCCCc
Confidence 996 5653
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.27 Score=47.37 Aligned_cols=91 Identities=15% Similarity=0.272 Sum_probs=67.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~ 188 (317)
.+|.|.| .|.+|..+-.+++.. |.+++++..++. . ...-.|+.. +.+++|+-+. .|++++++|.
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~~-~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPGK-G--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCCC-C--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6799999 899999999999998 887666655541 0 111246653 5688887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+.+++.... .-..++++++||..
T Consensus 74 ~~v~~~l~e~~~~-Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAIDA-GIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999988876652 23467889999853
|
ATP citrate lyases appear to form an outgroup. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.11 Score=53.04 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=49.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc---HHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..+.| |+|.|+|+|.-|.+.|+.|++. |.+|++.+++.... .......++....+. ...+...++|+|
T Consensus 3 ~~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~--~~~~~~~~~d~v 73 (448)
T COG0771 3 EDFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGS--HDDEDLAEFDLV 73 (448)
T ss_pred ccccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCc--cchhccccCCEE
Confidence 44567 9999999999999999999999 99988877554331 112223454332111 122667889999
Q ss_pred EEc
Q 021114 183 LLL 185 (317)
Q Consensus 183 ILa 185 (317)
|+.
T Consensus 74 V~S 76 (448)
T COG0771 74 VKS 76 (448)
T ss_pred EEC
Confidence 985
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.18 Score=47.16 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. ++|.|||+|-+|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999998
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.31 Score=50.05 Aligned_cols=102 Identities=16% Similarity=0.226 Sum_probs=67.5
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-----cee------
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTE------ 164 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~------ 164 (317)
..++| ++|+|+|+ .+-...++..|.+. |.+|.+++.. -...+.....+ +..
T Consensus 320 ~~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~-v~~~~~~~~~~~~~~~~~~~~~~~~ 391 (473)
T PLN02353 320 NTVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQ-VTEEQIQRDLSMNKFDWDHPRHLQP 391 (473)
T ss_pred cccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCC-CChHHHHHHhhcccccccccccccc
Confidence 35889 99999998 55677888888888 9987655433 22111111111 000
Q ss_pred -------cCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCch
Q 021114 165 -------ENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 165 -------~~~~~~~~~e~v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv~ 215 (317)
......+..+++++||+|++++.-....++ ++++.+.|++..+|+|..++.
T Consensus 392 ~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l 450 (473)
T PLN02353 392 MSPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVL 450 (473)
T ss_pred cccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCC
Confidence 001134667899999999999998877653 557777787666888988763
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.36 Score=40.69 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.2
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~ 147 (317)
+|.|||+|-+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 87 344443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.074 Score=51.47 Aligned_cols=68 Identities=19% Similarity=0.203 Sum_probs=41.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC----Ccee-c--CCCcCCHHhhcCcCCEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTE-E--NGTLGDIYETISGSDLVL 183 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~-~--~~~~~~~~e~v~~ADvVI 183 (317)
||+|||.|.+|.++|..|... +. ++++.+.........+.+. -+.. . .....+ .+.+++||+||
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-y~~~~~aDivv 73 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-YDDCADADIIV 73 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-HHHhCCCCEEE
Confidence 699999999999999999877 65 4555554332222222211 1110 0 001223 46789999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
++.-
T Consensus 74 itaG 77 (307)
T cd05290 74 ITAG 77 (307)
T ss_pred ECCC
Confidence 9753
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=49.36 Aligned_cols=73 Identities=19% Similarity=0.129 Sum_probs=41.6
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--C-C--ceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--A-G--FTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~-G--~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
|||+|||. |.+|.+++..|...+ +.+.++.+.++. +.....+.. . + .........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999885421 113455544443 222111111 1 1 110000023556888999999998
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
.-.
T Consensus 77 aG~ 79 (312)
T PRK05086 77 AGV 79 (312)
T ss_pred CCC
Confidence 753
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.36 Score=46.34 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=57.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHh-hhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+| .++.|+|.|.+|...++.+++ . | .+|++..+ ++...+.+++.+... ...+..+-. ..|+||=++
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~-~~~k~~~a~~~~~~~---~~~~~~~~~-g~d~viD~~ 230 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGK-HQEKLDLFSFADETY---LIDDIPEDL-AVDHAFECV 230 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeC-cHhHHHHHhhcCcee---ehhhhhhcc-CCcEEEECC
Confidence 47 899999999999998888775 4 4 35554443 344456666555432 011111211 479999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
........+++.+..++++-.++..
T Consensus 231 G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 231 GGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCccHHHHHHHHHhCcCCcEEEEE
Confidence 7432334566677788887766544
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.17 Score=53.40 Aligned_cols=73 Identities=21% Similarity=0.148 Sum_probs=51.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|+|||.|..|.+.|..|++. |++|++..+... ...+...+.|+...-.+
T Consensus 309 ~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 309 RS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 58 9999999999999999999999 999887765532 12344556675321111
Q ss_pred ----cCCHHhhcCcCCEEEEccCC
Q 021114 169 ----LGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 169 ----~~~~~e~v~~ADvVILavP~ 188 (317)
..+++++..+.|.|++++--
T Consensus 382 ~v~~~~~~~~l~~~~DaV~latGa 405 (639)
T PRK12809 382 EIGRDITFSDLTSEYDAVFIGVGT 405 (639)
T ss_pred ccCCcCCHHHHHhcCCEEEEeCCC
Confidence 12455666789999998753
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.21 Score=48.53 Aligned_cols=68 Identities=15% Similarity=0.115 Sum_probs=40.8
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--ccHHHHHHCCce---ecCCC-cCCHHhhcCcCCEEE
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGFT---EENGT-LGDIYETISGSDLVL 183 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~--~s~~~A~~~G~~---~~~~~-~~~~~e~v~~ADvVI 183 (317)
||+|||. |.+|.++|..|... ++ ++++.+.... ..++. ..+.. ....+ ..+..+.+++||+||
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL--~~~~~~~~i~~~~~~~~~~~~~~daDivv 72 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADL--SHIPTAASVKGFSGEEGLENALKGADVVV 72 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchh--hcCCcCceEEEecCCCchHHHcCCCCEEE
Confidence 6999999 99999999999877 65 4554443321 11111 11111 00000 013468899999999
Q ss_pred EccCC
Q 021114 184 LLISD 188 (317)
Q Consensus 184 LavP~ 188 (317)
++.-.
T Consensus 73 itaG~ 77 (312)
T TIGR01772 73 IPAGV 77 (312)
T ss_pred EeCCC
Confidence 97643
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.84 Score=46.64 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=40.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhh-hhhhcCCc--eEEEEecCCcccHHHHHH--CCc---eecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDI--VVKVGLRKGSRSFAEARA--AGF---TEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~-~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~---~~~~~~~~~~~e~v~~ADvV 182 (317)
-||+|||. |.+|.++|-.|... +-+.-.++ ++++.+...+.....+.+ .+. ..+-....+..+.+++||+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 68999999 99999999988653 00000011 344444333322222221 111 00000013456788999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
|+..-
T Consensus 181 VitAG 185 (444)
T PLN00112 181 LLIGA 185 (444)
T ss_pred EECCC
Confidence 99753
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.36 Score=47.22 Aligned_cols=91 Identities=11% Similarity=0.181 Sum_probs=68.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILav 186 (317)
.+|-|-| .|..|.-.++.+++. |-+|+-|..+.. .... ..|+.. +.+.+|+.+. +|+.++.+
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 6899999 599999999999999 988888877643 2211 125553 6789999887 99999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
|+....+.+.|..+. .-..+|+++.|+..
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe 125 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQ 125 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCch
Confidence 999988877765442 12347788899853
|
|
| >TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.18 Score=49.20 Aligned_cols=94 Identities=10% Similarity=0.020 Sum_probs=54.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCccc-HHHHHHCCc-----e---ecCCCcC-CHHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRS-FAEARAAGF-----T---EENGTLG-DIYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s-~~~A~~~G~-----~---~~~~~~~-~~~e~v~~A 179 (317)
++|+|+| .|.||..+++.|... . +++....+..... ........+ . ..+-... ..++...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 4799999 599999999988775 4 4654443332110 001100110 0 0000010 112345889
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+|++++|.....++.+++.. .|..++|.+|.
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999877776655433 57778877764
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan. |
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.32 Score=48.74 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=54.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP 187 (317)
..+-|+|+|.+|..+++.|++. |.++++.+.. . .+...+.|+..-.+..++.+. -+++||.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d-~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL-G--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc-h--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8877665543 1 233333342111122333332 2678999999998
Q ss_pred CchHHHHHHHHHhcCCCC-cEEE
Q 021114 188 DAAQADNYEKIFSCMKPN-SILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~g-aiVi 209 (317)
++.....+-.....+.|+ .++.
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa 334 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVA 334 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEE
Confidence 876654333333334443 3444
|
|
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.2 Score=48.45 Aligned_cols=71 Identities=17% Similarity=0.180 Sum_probs=52.4
Q ss_pred cccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..++| .+|++||-| ++..|++..+... |+++.+...++- ...+.+++.|... ....|+++++++
T Consensus 146 g~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v--~~~~d~~~a~~~ 216 (301)
T TIGR00670 146 GRLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKV--RETESLEEVIDE 216 (301)
T ss_pred CCCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEE--EEECCHHHHhCC
Confidence 45788 999999985 9999999999988 998877654321 2234555566432 124699999999
Q ss_pred CCEEEEc
Q 021114 179 SDLVLLL 185 (317)
Q Consensus 179 ADvVILa 185 (317)
||+|...
T Consensus 217 aDvvyt~ 223 (301)
T TIGR00670 217 ADVLYVT 223 (301)
T ss_pred CCEEEEC
Confidence 9999874
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.083 Score=45.83 Aligned_cols=90 Identities=14% Similarity=0.179 Sum_probs=54.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
....+| ++|++||+ +. +++..|+.. +.++.+.++... ... -...++. ..+.++++++||+|++
T Consensus 6 ~~~~~~-~~V~~VG~--f~-P~~~~l~~~------~~~v~v~d~~~~-~~~-~~~~~~~-----~~~~~~~l~~aD~vii 68 (147)
T PF04016_consen 6 LEIGPG-DKVGMVGY--FQ-PLVEKLKER------GAEVRVFDLNPD-NIG-EEPGDVP-----DEDAEEILPWADVVII 68 (147)
T ss_dssp CCTTTT-SEEEEES----H-CCHHHHCCC------CSEEEEEESSGG-G---SSCT-EE-----GGGHHHHGGG-SEEEE
T ss_pred hhhcCC-CEEEEEcC--cH-HHHHHHhcC------CCCEEEEECCCC-CCC-CCCCcCC-----HHHHHHHHccCCEEEE
Confidence 355677 99999996 22 377788766 788888777642 111 0111232 3578899999999987
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.-. +-...-+++++++.++++.+++.+
T Consensus 69 TGs-TlvN~Ti~~iL~~~~~~~~vil~G 95 (147)
T PF04016_consen 69 TGS-TLVNGTIDDILELARNAREVILYG 95 (147)
T ss_dssp ECH-HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred Eee-eeecCCHHHHHHhCccCCeEEEEe
Confidence 532 112235667777777666666544
|
; PDB: 3L5O_B 3NPG_A. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.33 Score=44.90 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|++ .+|.|||+|-+|..++++|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 567888 9999999999999999999988
|
|
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.16 Score=49.95 Aligned_cols=88 Identities=18% Similarity=0.189 Sum_probs=54.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCC--cccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVIL 184 (317)
++|+||| .|..|..+.+.|... .+ ++....... .+..... ..... ..+.++. ..++|+||+
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~------~hP~~~l~~laS~~saG~~~~~~-~~~~~-----v~~~~~~~~~~~Dvvf~ 72 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAER------QFPVGELYALASEESAGETLRFG-GKSVT-----VQDAAEFDWSQAQLAFF 72 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcC------CCCceEEEEEEccCcCCceEEEC-CcceE-----EEeCchhhccCCCEEEE
Confidence 7999999 599999999999874 33 332222211 1111100 00111 2233333 378999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|.....++.++..+ .|+.|+|.++.
T Consensus 73 a~p~~~s~~~~~~~~~---~g~~VIDlS~~ 99 (336)
T PRK08040 73 VAGREASAAYAEEATN---AGCLVIDSSGL 99 (336)
T ss_pred CCCHHHHHHHHHHHHH---CCCEEEECChH
Confidence 9998866667666543 58899988763
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.87 E-value=0.5 Score=45.87 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=59.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~v~~ADvVILav 186 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++..+..++..+.+++.|.... +.. .....+.....|+|+-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999999998 98876555544444445566776320 000 011223334579999887
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
... ..+++....++++..++..
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 2344555667777666544
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.12 Score=49.43 Aligned_cols=76 Identities=21% Similarity=0.126 Sum_probs=51.0
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC----Cc--eecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GF--TEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~----G~--~~~~~~~~~~~e~v~~A 179 (317)
+++| +++.|+|.|=.|.+++..|.+. |. ++.+.+|..++..+.+... +. .. .....+..+.+.++
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 195 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVV-GVDARGIEDVIAAA 195 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEE-ecCHhHHHHHHhhc
Confidence 5678 9999999999999999999988 87 5777777655444444331 11 11 00001223456789
Q ss_pred CEEEEccCCch
Q 021114 180 DLVLLLISDAA 190 (317)
Q Consensus 180 DvVILavP~~~ 190 (317)
|+||-++|...
T Consensus 196 divINaTp~Gm 206 (283)
T PRK14027 196 DGVVNATPMGM 206 (283)
T ss_pred CEEEEcCCCCC
Confidence 99999999654
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.14 Score=53.12 Aligned_cols=75 Identities=24% Similarity=0.176 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-cCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~-v~~ADvVILa 185 (317)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+... ....+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~--~~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQA--LTLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCce--eeHhHhhhhccccCeEEEec
Confidence 4778 9999999999999999999998 9888777776444334443333110 001222222 2357888888
Q ss_pred cCCch
Q 021114 186 ISDAA 190 (317)
Q Consensus 186 vP~~~ 190 (317)
+|...
T Consensus 447 T~vGm 451 (529)
T PLN02520 447 TSVGM 451 (529)
T ss_pred ccCCC
Confidence 88764
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.34 Score=47.52 Aligned_cols=89 Identities=16% Similarity=0.200 Sum_probs=55.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC---------------------cccH---HHHHH
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (317)
..-|+. .+|.|||+|-+|..+|++|... |. ++.+.++.. .+.. +...+
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 466778 9999999999999999999988 77 555555421 0101 01111
Q ss_pred --CCcee----cCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 160 --AGFTE----ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 160 --~G~~~----~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
..+.. .+-+..+..+.++++|+||.++-......++++...
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~ 138 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQ 138 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHH
Confidence 11110 011112345788999999999876665557776544
|
|
| >PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.15 Score=50.59 Aligned_cols=84 Identities=14% Similarity=0.035 Sum_probs=50.8
Q ss_pred CEEEEEeccchHHHH-HHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc----eecCC-C---------c--CCHHh
Q 021114 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF----TEENG-T---------L--GDIYE 174 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~----~~~~~-~---------~--~~~~e 174 (317)
|||.++|.|+||.+. +..|.+. |++|++.+. .+...+...+.|. ...+. . . .+.++
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~-~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDV-NQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEEC-CHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999866 6667666 888765553 3334444444553 11111 0 1 02122
Q ss_pred ---hcCcCCEEEEccCCchHHHHHHHHHhcC
Q 021114 175 ---TISGSDLVLLLISDAAQADNYEKIFSCM 202 (317)
Q Consensus 175 ---~v~~ADvVILavP~~~~~~vl~ei~~~l 202 (317)
.+.++|+|+++++......+...+.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 4458899999999877655555444433
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.29 Score=39.83 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=48.7
Q ss_pred eccchHHHHHHHHHhhhhhhcCCceEEEEecCC---cccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCchHH
Q 021114 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (317)
Q Consensus 118 G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~---~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~~~~ 192 (317)
|+|.||..+++.|.+.-+. .++++....+++ .... .....+... ..++++++. +.|+||=|++.+...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDW-AASFPDEAF----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTH-HHHHTHSCE----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhh-hhhcccccc----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999886111 245544333333 1111 111122221 468899988 999999999888777
Q ss_pred HHHHHHHhcCCCCcEEEE
Q 021114 193 DNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 193 ~vl~ei~~~lk~gaiVi~ 210 (317)
+.+.+.+. .|.-|+.
T Consensus 74 ~~~~~~L~---~G~~VVt 88 (117)
T PF03447_consen 74 EYYEKALE---RGKHVVT 88 (117)
T ss_dssp HHHHHHHH---TTCEEEE
T ss_pred HHHHHHHH---CCCeEEE
Confidence 77766554 4555553
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.18 Score=48.96 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=41.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCC--cccHHHHHHCC-ceecCC-CcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENG-TLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~~~-~~~~~~e~v~~ADvVIL 184 (317)
+||+|||. |++|.++|..|... ++ ++++.+... ...++...... ...... ..+++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 444444321 11122111111 111000 01234688999999998
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.84 Score=45.28 Aligned_cols=128 Identities=16% Similarity=0.238 Sum_probs=80.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC-----H----HhhcC-c
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-----I----YETIS-G 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-----~----~e~v~-~ 178 (317)
.| .+++|+|+|-+|-+..++++.. |...+++.+.+...++.|++.|.++- ..+ . .++-. .
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~~---vn~~~~~~vv~~i~~~T~gG 254 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATHF---VNPKEVDDVVEAIVELTDGG 254 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCcee---ecchhhhhHHHHHHHhcCCC
Confidence 45 7999999999999999999999 88778899988888999999998751 222 1 22233 7
Q ss_pred CCEEEEccCCchHHHHHHHHHhc-CCCCcEEEE-ecCc--hhhhhhhcccCCCCCccEE-----EeccCCCChhhHHHHh
Q 021114 179 SDLVLLLISDAAQADNYEKIFSC-MKPNSILGL-SHGF--LLGHLQSIGLDFPKNIGVI-----AVCPKGMGPSVRRLYV 249 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~-lk~gaiVi~-~~Gv--~l~~~~~~~~~l~~~i~vV-----~vhPn~pg~~~r~lf~ 249 (317)
+|.+|-++-... ++++-+.. -+-|..+++ +++. .+. +.. ..+-.+..+. ..-|..--+..-++|.
T Consensus 255 ~d~~~e~~G~~~---~~~~al~~~~~~G~~v~iGv~~~~~~i~-~~~--~~lv~gr~~~Gs~~G~~~p~~diP~lv~~y~ 328 (366)
T COG1062 255 ADYAFECVGNVE---VMRQALEATHRGGTSVIIGVAGAGQEIS-TRP--FQLVTGRVWKGSAFGGARPRSDIPRLVDLYM 328 (366)
T ss_pred CCEEEEccCCHH---HHHHHHHHHhcCCeEEEEecCCCCceee-cCh--HHeeccceEEEEeecCCccccchhHHHHHHH
Confidence 899998887654 44432222 234665542 2221 110 110 0111111111 2566666666788999
Q ss_pred hcc
Q 021114 250 QGK 252 (317)
Q Consensus 250 ~G~ 252 (317)
+||
T Consensus 329 ~Gk 331 (366)
T COG1062 329 AGK 331 (366)
T ss_pred cCC
Confidence 985
|
|
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.21 Score=49.36 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=54.7
Q ss_pred CEEEEEec-cchHHHHHHHHHh-hhhhhcCCce---EEEEe-cC-CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL-RK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~-~~~~~~~G~~---Vivg~-r~-~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
++|||||. |..|+.+.+.|.+ . .++ +.... .+ ..+......+ ....+ ..+.++ +++.|+|++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~~~-~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKINS-FEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCHHH-hcCCCEEEE
Confidence 68999995 9999999999984 4 444 32222 21 1111111100 11110 124433 478999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|.....++..+.. +.|+.|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999887666766653 368899988764
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.64 Score=43.29 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=55.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
-.++| +++.|||.|.+|..=++.|.+. |.+|++....-.+.+....+.| +...... .+. +-+..+++||.
T Consensus 21 l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~~r~-~~~-~dl~g~~LVia 91 (223)
T PRK05562 21 LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLIKGN-YDK-EFIKDKHLIVI 91 (223)
T ss_pred EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CCh-HHhCCCcEEEE
Confidence 56678 9999999999999989999888 8887665443222332223333 2211111 122 34678999999
Q ss_pred ccCCchHHHHHHHHH
Q 021114 185 LISDAAQADNYEKIF 199 (317)
Q Consensus 185 avP~~~~~~vl~ei~ 199 (317)
||.+....+-+.+..
T Consensus 92 ATdD~~vN~~I~~~a 106 (223)
T PRK05562 92 ATDDEKLNNKIRKHC 106 (223)
T ss_pred CCCCHHHHHHHHHHH
Confidence 999887766554443
|
|
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.091 Score=53.21 Aligned_cols=75 Identities=20% Similarity=0.208 Sum_probs=42.6
Q ss_pred CCEEEEEeccchHHHHHH--HHHhhhhhhcCCceEEEEecCCcccHHHH--------HHCCceecCCCcCCHHhhcCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEA--------RAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A--------~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
++||+|||.|+||.+.+. .+... .+-.+.+|++.+.. ++..+.+ ...+....-...+|..+++++||
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~--~~l~~~evvLvDid-~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSV--PALRDAEIALMDID-PERLEESEIVARKLAESLGASAKITATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhC--ccCCCCEEEEECCC-HHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCC
Confidence 379999999999976655 55311 01114466555443 3222211 11221100012457789999999
Q ss_pred EEEEccCC
Q 021114 181 LVLLLISD 188 (317)
Q Consensus 181 vVILavP~ 188 (317)
+||.++-.
T Consensus 78 fVv~ti~v 85 (431)
T PRK15076 78 YVINAIQV 85 (431)
T ss_pred EEeEeeee
Confidence 99998755
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.24 Score=50.30 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=46.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH---HHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA---EARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~---~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+.| ++|+|+|+|.=|.+.|+.|++. |.+|++.+.+...... ..++.+... . .....+.+.+.|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999999 9998877644322111 222222221 1 1123456788999998
Q ss_pred cc
Q 021114 185 LI 186 (317)
Q Consensus 185 av 186 (317)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 53
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=93.52 E-value=0.47 Score=47.25 Aligned_cols=90 Identities=19% Similarity=0.250 Sum_probs=62.3
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| ++|+|.|+ -+-...+++.|.+. |.+|.+++..-.. .. ....+. ..+++|+
T Consensus 309 ~~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~-~~~~~~------~~~~~~~ 373 (411)
T TIGR03026 309 GPLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EE-VKGLPL------IDDLEEA 373 (411)
T ss_pred hcccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hh-hhhccc------CCCHHHH
Confidence 35789 99999998 45677888888888 9988665543221 11 111111 3578899
Q ss_pred cCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEe
Q 021114 176 ISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~-vl~ei~~~lk~gaiVi~~ 211 (317)
++++|+|++++.-....+ -++++...|++ .+|+|.
T Consensus 374 ~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D~ 409 (411)
T TIGR03026 374 LKGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVDT 409 (411)
T ss_pred HhCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEeC
Confidence 999999999999887765 35566666654 467764
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.27 Score=48.14 Aligned_cols=93 Identities=13% Similarity=0.076 Sum_probs=53.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCcee--------cCCC--cCCHHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTE--------ENGT--LGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~--------~~~~--~~~~~e~v~~A 179 (317)
++|+|+| .|.+|..+.+.|.+. ..+++....+..+..-+... ..++.. .+-. ..+.+ .+.++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCC
Confidence 7899998 899999999999875 02354433233211000000 011100 0000 12333 45789
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+|++++|.....++.+.+.. .|..++|.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999866666654433 5777887776
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.29 Score=45.68 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|++ .+|.|||+|-+|..+|++|...
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.54 Score=45.00 Aligned_cols=90 Identities=18% Similarity=0.201 Sum_probs=61.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .++.|+|.|.+|...++.++.. |.+|+...+. ++..+.+++.|.... ....++.-+..|+++.+...
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~v---i~~~~~~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAASA---GGAYDTPPEPLDAAILFAPA 233 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCcee---ccccccCcccceEEEECCCc
Confidence 47 8999999999999999988888 9876554444 445788899987531 11111112347888877665
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
. ..+++.++.++++-.++..+
T Consensus 234 ~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 234 G---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred H---HHHHHHHHhhCCCcEEEEEe
Confidence 3 35666667788877766544
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.2 Score=48.92 Aligned_cols=70 Identities=11% Similarity=0.132 Sum_probs=42.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcc--cHHHHHHC-CceecC-CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARAA-GFTEEN-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~--s~~~A~~~-G~~~~~-~~~~~~~e~v~~ADvVIL 184 (317)
.||+|||. |.+|.++|..|... +. ++.+.+....+ .++..... .....+ ....+..+.+++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 79999999 99999999999876 54 45554443211 11111000 011101 013356789999999999
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 753
|
|
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.74 Score=44.60 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHHH-HHHCCceecCCCcCCHHhhcCcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAE-ARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~~-A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
..++| .+|++||- ++...|++..+... |++|.+.....- ...+. +++.|... ....+++++++++
T Consensus 148 g~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~a 218 (304)
T PRK00779 148 GSLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASI--EVTHDPKEAVKGA 218 (304)
T ss_pred CCcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeE--EEEcCHHHHhCCC
Confidence 45788 89999996 78999999999888 998766653321 11111 45566321 1146999999999
Q ss_pred CEEEEc
Q 021114 180 DLVLLL 185 (317)
Q Consensus 180 DvVILa 185 (317)
|+|..-
T Consensus 219 Dvvy~~ 224 (304)
T PRK00779 219 DVVYTD 224 (304)
T ss_pred CEEEec
Confidence 999985
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.43 E-value=0.3 Score=48.91 Aligned_cols=71 Identities=21% Similarity=0.159 Sum_probs=46.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++.+ ++|.|+|.|..|.+.|+.|++. |++|.+.+..... ..+...+ .|+....+ ...++...+.|+||
T Consensus 2 ~~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g--~~~~~~~~~~d~vv 72 (445)
T PRK04308 2 TFQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFYTG--RLKDALDNGFDILA 72 (445)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEEeC--CCCHHHHhCCCEEE
Confidence 3568 9999999999999999999999 9988766544322 1222222 36542101 11234457899999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 853
|
|
| >TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial | Back alignment and domain information |
|---|
Probab=93.41 E-value=0.56 Score=46.76 Aligned_cols=90 Identities=18% Similarity=0.277 Sum_probs=51.9
Q ss_pred CEEEEEec-cchHHHHHHHHH-hhhhhhcCCce---EEEEecCCcccHHHHHHCCceecCCCcCCH-H-hhcCcCCEEEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr-~~~~~~~~G~~---Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~-e~v~~ADvVIL 184 (317)
++|||||+ |..|+.+.+.|. +. ++. +...... ++...- ..+........+. + +..++.|+++.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~~--~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQAA--PSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCCc--CCCCCCcceEEcCcccccccCCCEEEE
Confidence 57999995 999999999888 54 443 2222211 110000 1110000011222 1 35789999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~g--aiVi~~~Gv 214 (317)
+.+.....++..+.. +.| ++|+|.++.
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa 99 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS 99 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh
Confidence 998775555555543 467 788988764
|
|
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=93.32 E-value=0.52 Score=43.13 Aligned_cols=28 Identities=25% Similarity=0.406 Sum_probs=25.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. .+|.|||+|-+|..+|++|...
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~ 50 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS 50 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc
Confidence 567788 9999999999999999999988
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.4 Score=48.64 Aligned_cols=73 Identities=25% Similarity=0.238 Sum_probs=51.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|.|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+.....+
T Consensus 140 ~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~ 212 (467)
T TIGR01318 140 TG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNC 212 (467)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCC
Confidence 68 9999999999999999999998 998877765421 12355667786431111
Q ss_pred -c---CCHHhhcCcCCEEEEccCC
Q 021114 169 -L---GDIYETISGSDLVLLLISD 188 (317)
Q Consensus 169 -~---~~~~e~v~~ADvVILavP~ 188 (317)
. ...++...+.|.||+++--
T Consensus 213 ~v~~~~~~~~~~~~~D~vilAtGa 236 (467)
T TIGR01318 213 EVGRDISLDDLLEDYDAVFLGVGT 236 (467)
T ss_pred EeCCccCHHHHHhcCCEEEEEeCC
Confidence 1 1334555679999998754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=0.4 Score=46.45 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=71.7
Q ss_pred ccccchhhhhhcCCCccccc--ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH---
Q 021114 85 SLANRDEFIVRGGRDLFKLL--PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--- 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~--~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--- 159 (317)
+|..|..| .+=++-++... ...... ++|..||+|..|-+-.-.++.... +- .+++.+.+++..+.|++
T Consensus 98 ~Fpy~~nY-~~L~~lE~~~L~~~~~~~p-~~VldIGcGpgpltaiilaa~~~p----~~-~~~giD~d~~ai~~Ar~~~~ 170 (296)
T PLN03075 98 LFPYYNNY-LKLSKLEFDLLSQHVNGVP-TKVAFVGSGPLPLTSIVLAKHHLP----TT-SFHNFDIDPSANDVARRLVS 170 (296)
T ss_pred cCCchHHH-HHHHHHHHHHHHHhhcCCC-CEEEEECCCCcHHHHHHHHHhcCC----CC-EEEEEeCCHHHHHHHHHHhh
Confidence 47777777 55554443321 111256 999999999987755544443311 22 35678877766665554
Q ss_pred --CCceec-CCCcCCHHhh---cCcCCEEEEccC----CchHHHHHHHHHhcCCCCcEEEEec
Q 021114 160 --AGFTEE-NGTLGDIYET---ISGSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 160 --~G~~~~-~~~~~~~~e~---v~~ADvVILavP----~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.|+... .....|..+. ..+-|+|++.+= .....++++.+...|+||.+++.-.
T Consensus 171 ~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 171 SDPDLSKRMFFHTADVMDVTESLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred hccCccCCcEEEECchhhcccccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 222110 0001233332 468899999852 1334569999999999999987543
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.13 Score=51.12 Aligned_cols=66 Identities=18% Similarity=0.139 Sum_probs=43.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~v~~ADvVIL 184 (317)
++|||||-|-.|.=|+...+.. |+++++-+.. +..-........+..+ +....+.+++++||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~-~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARL------GIKVIVLDPD-ADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCC-CCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 8999999999999999999998 9998665432 2222222222222100 001246678899999865
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.71 Score=40.84 Aligned_cols=30 Identities=27% Similarity=0.292 Sum_probs=24.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEec
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLR 148 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r 148 (317)
+|.|||+|-+|..++++|... |.. +.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 763 544443
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.22 Score=50.80 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
.+++| ++|+|.|+|++|...|+.|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 998765534
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.62 Score=45.21 Aligned_cols=72 Identities=15% Similarity=0.106 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..++| .||++||-+ ++..|++..+... .|+++.+...+. ....+.+.+.|... ....++++++++
T Consensus 147 g~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~~~ 218 (306)
T PLN02527 147 GRLDG-IKVGLVGDLANGRTVRSLAYLLAKY-----EDVKIYFVAPDVVKMKDDIKDYLTSKGVEW--EESSDLMEVASK 218 (306)
T ss_pred CCcCC-CEEEEECCCCCChhHHHHHHHHHhc-----CCCEEEEECCCccCCCHHHHHHHHHcCCEE--EEEcCHHHHhCC
Confidence 45788 999999976 5789999887763 167776654332 22234455555432 124689999999
Q ss_pred CCEEEEc
Q 021114 179 SDLVLLL 185 (317)
Q Consensus 179 ADvVILa 185 (317)
||+|...
T Consensus 219 aDvvyt~ 225 (306)
T PLN02527 219 CDVLYQT 225 (306)
T ss_pred CCEEEEC
Confidence 9999984
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.18 Score=49.64 Aligned_cols=65 Identities=20% Similarity=0.159 Sum_probs=41.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
+++|||||.|-.|..+++.+++. |+++++.+....... ......... ....| +.++++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa-~~~ad~~~~--~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPA-AQVADEVIV--ADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCch-hHhCceEEe--cCCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999999 999876654322211 111122221 11223 4557788888754
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.21 Score=47.43 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=46.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILavP 187 (317)
|+|.|+| .|.+|..+++.|.+. |++|+...|+.++. ......|+....+... ++.++++++|+|+-+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 699999999999999 99987777653321 1112234321111122 35677899999998754
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.61 Score=44.80 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=49.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~---------~G~~~~~~~~~~~~e~v~~ADv 181 (317)
++|.|||.|.+--+...-.+.. +.. .+.+.|.++...+.+++ .+..-......+...-+.+.|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~------~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH------GPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H------TT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 4999999999987776665554 322 34566766655554432 1111100001122223578999
Q ss_pred EEEccCCc----hHHHHHHHHHhcCCCCcEEE--EecCc
Q 021114 182 VLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGF 214 (317)
Q Consensus 182 VILavP~~----~~~~vl~ei~~~lk~gaiVi--~~~Gv 214 (317)
|+++.-.. .-.++++.+..+|++|+.|+ -.+|.
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~Gl 234 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGL 234 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GG
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhh
Confidence 99998776 44569999999999999887 45665
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.36 Score=47.35 Aligned_cols=71 Identities=18% Similarity=0.144 Sum_probs=49.7
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| .||++||-+ ++..|++..+... |+++.+...+. +...+ .+.+.|... ....+++++
T Consensus 151 g~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea 221 (332)
T PRK04284 151 KPYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKI--TITDDIDEG 221 (332)
T ss_pred CCcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 35778 999999975 8888999988888 99877665432 12222 233456321 125699999
Q ss_pred cCcCCEEEEc
Q 021114 176 ISGSDLVLLL 185 (317)
Q Consensus 176 v~~ADvVILa 185 (317)
+++||+|..-
T Consensus 222 ~~~aDvvy~~ 231 (332)
T PRK04284 222 VKGSDVIYTD 231 (332)
T ss_pred hCCCCEEEEC
Confidence 9999999985
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.87 Score=40.84 Aligned_cols=37 Identities=24% Similarity=0.243 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 3 ~~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 3 DLPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 4678 99999995 89999999999998 99887666653
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.49 Score=46.65 Aligned_cols=28 Identities=21% Similarity=0.346 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...|+. .+|.|||+|-+|..++++|...
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~ 50 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA 50 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.61 Score=46.10 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEec
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r 148 (317)
...|++ ++|.|||+|-+|..++.+|... |. ++++.++
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~ 167 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDH 167 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 356788 9999999999999999999998 77 4444443
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.44 Score=47.52 Aligned_cols=71 Identities=13% Similarity=0.106 Sum_probs=45.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++.+ ++|.|||+|-.|.+.++.|++. |++|.+.+...........+.|+.... -....+.+++.|+||..-
T Consensus 3 ~~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~l~~g~~~~~--~~~~~~~~~~~d~vv~sp 73 (438)
T PRK03806 3 DYQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDKLPENVERHT--GSLNDEWLLAADLIVASP 73 (438)
T ss_pred ccCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHHHhcCCEEEe--CCCCHHHhcCCCEEEECC
Confidence 4667 8999999999999999999998 998765554322211112234654310 112334567889877643
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.67 Score=44.75 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=26.5
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
...-|+. .+|.|||+|-+|..++++|...
T Consensus 21 ~Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 21 EQQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 3577888 9999999999999999999998
|
|
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.33 Score=48.42 Aligned_cols=92 Identities=15% Similarity=0.246 Sum_probs=52.9
Q ss_pred CCEEEEEec-cchHHHHHH-HHHhhhhhhcCCce---EEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~-~Lr~~~~~~~~G~~---Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|++|||||. |..|+.+.+ .|.+. .+. +.. ..+. ++-..-.. .|....-....+. +.++++|+|++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~ 71 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIIT 71 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcccccCCCcceEEecCCh-hHhcCCCEEEE
Confidence 468999995 999999997 55555 553 433 2221 00000000 1111000001223 34578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCC--cEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~g--aiVi~~~Gv 214 (317)
++|.....++..+... .| ++|+|.+|.
T Consensus 72 a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~ 100 (369)
T PRK06598 72 CQGGDYTNEVYPKLRA---AGWQGYWIDAAST 100 (369)
T ss_pred CCCHHHHHHHHHHHHh---CCCCeEEEECChH
Confidence 9998866667766544 57 678888764
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.54 Score=45.31 Aligned_cols=66 Identities=21% Similarity=0.237 Sum_probs=39.1
Q ss_pred EEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--C--ceecC-CCcCCHHhhcCcCCEEEEccC
Q 021114 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTEEN-GTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 116 IIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~~~-~~~~~~~e~v~~ADvVILavP 187 (317)
|||.|.+|.++|..|... ++ ++.+.+...+.....+.+. . +...+ ....+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 4555554333222222221 1 00000 001234578899999999754
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.43 Score=46.94 Aligned_cols=71 Identities=17% Similarity=0.160 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~v 176 (317)
.++| .+|++||-+ ++..|++..+... |+++.+...+. ....+ .+.+.|... ....++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKI--TLTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4778 999999976 7899999998888 99876654332 11122 233445321 0146999999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-.
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=92.70 E-value=0.44 Score=47.35 Aligned_cols=89 Identities=17% Similarity=0.149 Sum_probs=54.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--c-----------------ccH---HHHHH--
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--S-----------------RSF---AEARA-- 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~-----------------~s~---~~A~~-- 159 (317)
...|+. .+|.|||+|-+|..++++|... |. ++.+.++.. . +.. +...+
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 567788 9999999999999999999998 76 444443320 0 000 00111
Q ss_pred CCc--eecCCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHHh
Q 021114 160 AGF--TEENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 160 ~G~--~~~~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~~ 200 (317)
..+ ...+... .+..+.++++|+|+-|+-.-....+++++..
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~ 153 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAAE 153 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHH
Confidence 111 1100111 2345788999999888877665557776543
|
|
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.46 Score=46.50 Aligned_cols=98 Identities=14% Similarity=0.135 Sum_probs=49.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhh--hhcCCceEEE-EecCCc----c--cHHH---HHHCCceecCCCcC--CHHhhc-
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKV-GLRKGS----R--SFAE---ARAAGFTEENGTLG--DIYETI- 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~--~~~~G~~Viv-g~r~~~----~--s~~~---A~~~G~~~~~~~~~--~~~e~v- 176 (317)
++|+|||+|++|+.+++.|++.-+ ..+.+++++. .+++.. . ..+. ..+.|... ..... +.++++
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~-~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLE-EIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccc-cCCCCcCCHHHHhc
Confidence 489999999999999999977311 1123455432 232211 1 0111 01112110 00011 455553
Q ss_pred CcCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEE
Q 021114 177 SGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 177 ~~ADvVILavP~~~~-~~vl~ei~~~lk~gaiVi~ 210 (317)
.++|+||=++|.... ...+.-+.+.|+.|.-|+.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT 114 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVT 114 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc
Confidence 478999999974321 1123333444556665553
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=92.67 E-value=0.28 Score=48.07 Aligned_cols=85 Identities=16% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCce---EEEEecCC--cccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEE
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRKG--SRSFAEARAAG--FTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~---Vivg~r~~--~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+|+||| .|..|..+.+.|.+. ++. +.+..+.. .+... -.| .... -.+. +.++++|+||+
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~~~~---~~~~-~~~~~~D~v~~ 67 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKELEVN---EAKI-ESFEGIDIALF 67 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeEEEE---eCCh-HHhcCCCEEEE
Confidence 589999 899999999999886 663 22222221 11111 112 1110 0123 34589999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|.....++..++. +.|+.|+|.++
T Consensus 68 a~g~~~s~~~a~~~~---~~G~~VID~ss 93 (339)
T TIGR01296 68 SAGGSVSKEFAPKAA---KCGAIVIDNTS 93 (339)
T ss_pred CCCHHHHHHHHHHHH---HCCCEEEECCH
Confidence 999887777766554 35778888776
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.36 Score=52.33 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.3
Q ss_pred CEEEEEeccchHHHH-HHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|.|||+|-.|.+. |+.|++. |++|.+.+.+.....+...+.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 579999999999997 9999999 99987655443333344455676542 22234667789999875
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=92.62 E-value=1.2 Score=44.03 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=64.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCc-CCHHh----hc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYE----TI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~-~~~~e----~v--~~ADv 181 (317)
.| .++.|.|.|.+|...++.++.. |.++++..+.+.+..+.+++.|+..-+... .+..+ .. ...|+
T Consensus 185 ~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence 57 8999999999999999999998 987665555555567888888874211111 12222 22 24799
Q ss_pred EEEccCCchH-----------HHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~-----------~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++-.... ...+++.++.++++-.++..+
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 9988875421 235666667777777666544
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.33 Score=46.23 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=48.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
+++.|+|.|-.+.+++..|.+. |. ++.+.+|..++..+.+...+... ..+. ....+|+||-++|...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 7899999999999999999988 87 58888887655544554443321 0011 1256899999999654
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.89 Score=42.93 Aligned_cols=92 Identities=21% Similarity=0.259 Sum_probs=65.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH----HCCceecCCCcCCHHhhcC---cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~~~e~v~---~AD 180 (317)
|.| ++|.=||+| |+.++.-|.+. |..| .|.|-.++..+.|+ +.|+.. +....+.+|+.. +-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 789 999999998 67888888888 9876 57777777776665 344442 223456666665 579
Q ss_pred EEEE-----ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLL-----LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVIL-----avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+. |+|+... ++.....++|||.++.++.
T Consensus 127 vV~cmEVlEHv~dp~~--~~~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 127 VVTCMEVLEHVPDPES--FLRACAKLVKPGGILFLST 161 (243)
T ss_pred EEEEhhHHHccCCHHH--HHHHHHHHcCCCcEEEEec
Confidence 9876 4555433 6778888999998887653
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.48 E-value=0.57 Score=45.56 Aligned_cols=70 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-c-H----HHHHHCCceecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-S-F----AEARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s-~----~~A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
.++| +||++||- +++..|++..+... |+++.+...+.-. . . +.+.+.|-.. ...+++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~---~~~d~~~av~~a 219 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLS---WEMNLHKAVSHA 219 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeE---EEeCHHHHhCCC
Confidence 5788 99999996 68999999999888 9988766544311 1 1 2233344221 146899999999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+|..-+
T Consensus 220 Dvvy~d~ 226 (311)
T PRK14804 220 DYVYTDT 226 (311)
T ss_pred CEEEeee
Confidence 9999854
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.38 E-value=0.31 Score=50.53 Aligned_cols=76 Identities=18% Similarity=0.181 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC--------------------cccHHHHHHCCceec-
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (317)
.-.| ++|.|||.|.+|.+.|..|++. |++|++.++.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999999 99887765321 123355677786421
Q ss_pred CCCc-C--CHHhhcCcCCEEEEccCCc
Q 021114 166 NGTL-G--DIYETISGSDLVLLLISDA 189 (317)
Q Consensus 166 ~~~~-~--~~~e~v~~ADvVILavP~~ 189 (317)
+... . +.++.-...|+||+++-..
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~~ 233 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGAQ 233 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCCC
Confidence 1111 1 2334445689999988543
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.51 Score=45.78 Aligned_cols=67 Identities=16% Similarity=0.219 Sum_probs=47.4
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..++| .||++||- +++..|++..+... |+++.+...++-.. .. . ..+. ...+++|++++||+|
T Consensus 152 G~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~-~~-~-~~~~----~~~d~~ea~~~aDvv 217 (305)
T PRK00856 152 GRLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLP-EG-M-PEYG----VHTDLDEVIEDADVV 217 (305)
T ss_pred CCCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCc-cc-c-cceE----EECCHHHHhCCCCEE
Confidence 45788 99999997 58999999999998 99876665432110 00 1 0122 256999999999998
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
....
T Consensus 218 yt~~ 221 (305)
T PRK00856 218 MMLR 221 (305)
T ss_pred EECC
Confidence 8743
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.1 Score=41.01 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=47.3
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCC----HHhhc-Cc
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD----IYETI-SG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~----~~e~v-~~ 178 (317)
...++ |+|.|+| .|.+|..+++.|.+. |++|+...|...+..+.... .++........+ +.+.+ ..
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~ 85 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDD 85 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcC
Confidence 45567 9999999 599999999999998 99887666653321111111 122110111222 33455 57
Q ss_pred CCEEEEccCC
Q 021114 179 SDLVLLLISD 188 (317)
Q Consensus 179 ADvVILavP~ 188 (317)
.|+||.+.+.
T Consensus 86 ~d~vi~~~g~ 95 (251)
T PLN00141 86 SDAVICATGF 95 (251)
T ss_pred CCEEEECCCC
Confidence 9999988654
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.84 Score=44.48 Aligned_cols=85 Identities=16% Similarity=0.232 Sum_probs=56.8
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHH----HHCC--ceecCCCcCCHHhhc
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAG--FTEENGTLGDIYETI 176 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G--~~~~~~~~~~~~e~v 176 (317)
|+| +|+++||=| ||+.|+....... |+++.+.... +++-.+.| .+.| +.. ..|++|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 788 999999966 6888888887777 9988777543 23333333 3334 332 46999999
Q ss_pred CcCCEEEEccCCchHH--HHHHHHHhcCC
Q 021114 177 SGSDLVLLLISDAAQA--DNYEKIFSCMK 203 (317)
Q Consensus 177 ~~ADvVILavP~~~~~--~vl~ei~~~lk 203 (317)
++||+|..=+..+.-. +..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 9999999877655422 23334444443
|
|
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.32 Score=47.35 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEEEeccchHHHHHHHHHhh
Q 021114 113 QIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~ 133 (317)
||.|||+|-+|..+|++|...
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 589999999999999999998
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=92.27 E-value=1.2 Score=44.80 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhh
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
-||+|||. |.+|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 68999999 99999999999876
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=92.17 E-value=0.57 Score=46.74 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
..-|+. .+|.|||+|-+|..+|++|...
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 456777 9999999999999999999988
|
|
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.12 E-value=1.1 Score=44.14 Aligned_cols=71 Identities=13% Similarity=0.041 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhcC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v~ 177 (317)
.++| .+|++||- .++..|++..+... |++|.+...+. ..-.+. +...|... ....+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSV--LVTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeE--EEEcCHHHHhC
Confidence 5888 99999996 57888888888877 99877664432 112222 22345321 01469999999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
++|+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=0.53 Score=46.24 Aligned_cols=71 Identities=17% Similarity=0.117 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~v 176 (317)
.|+| .+|++||-+ ++..|++..+... |+++.+...+. +... +.+.+.|... ....++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARI--TVTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999986 6788888888887 99877665332 1111 2233456321 1257999999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.45 Score=47.29 Aligned_cols=65 Identities=26% Similarity=0.307 Sum_probs=43.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH----HHH-HCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~-~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+|.|||+|-.|.++|+.|++. |++|.+.+........ ..+ ..|+....+ .+ .+.+.++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g--~~-~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTG--LH-LEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEEec--Cc-hHHhccCCEEEECC
Confidence 479999999999999999999 9988766544322121 112 246643111 23 45678899998853
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=91.89 E-value=1.2 Score=44.46 Aligned_cols=98 Identities=15% Similarity=0.198 Sum_probs=57.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---------CceecC--CCcCCHHhhc-
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEEN--GTLGDIYETI- 176 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~--~~~~~~~e~v- 176 (317)
..-++|.|||.| .|..+...|+.. +...+...+.++...+.|++. .+.+.. -...|..+.+
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~ 221 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS 221 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH
Confidence 333899999998 455555555443 333345566666666777641 110000 0023444433
Q ss_pred ---CcCCEEEEccCCchH--------HHHHHHHHhcCCCCcEEEEecC
Q 021114 177 ---SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 177 ---~~ADvVILavP~~~~--------~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.+-|+||+-+|+... .++++.+...|+||-+++.-++
T Consensus 222 ~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 222 SPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred hcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 245999999876421 3466788899999998765444
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.88 E-value=0.48 Score=47.48 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=43.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHH--CCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
-+|.|||+|-.|.++|+.|++. |++|.+.+..... ..+..++ .|+....+ ....+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~--~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELRCG--GFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEEeC--CCChHHhcCCCEEEEC
Confidence 4799999999999999999999 9988766544322 2222223 26543100 1224556789999884
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=0.81 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
.+|+| ++|.|.|.|++|...|+.|.+. |.+|+...+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 47999 9999999999999999999999 998765444
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.86 E-value=1.5 Score=42.26 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=57.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~v--~~ADv 181 (317)
+| .+|.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.|...- +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 47 8999999999999999999998 98533455444556677777775210 111112222 22 24788
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+=++... ..+++....++++-.++..+
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~G 276 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLVG 276 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEEC
Confidence 88777642 23344445566666655443
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.91 Score=46.17 Aligned_cols=80 Identities=19% Similarity=0.145 Sum_probs=53.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc-eecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| +++.|||-|.++..=++.|.+. |.+|++....-.+......+.|- ....... . .+-++++|+||
T Consensus 7 ~~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~~-~-~~dl~~~~lv~ 77 (457)
T PRK10637 7 FCQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGPF-D-ESLLDTCWLAI 77 (457)
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCCC-C-hHHhCCCEEEE
Confidence 468999 9999999999999989999988 88776653322222333333332 2111111 2 34578999999
Q ss_pred EccCCchHHH
Q 021114 184 LLISDAAQAD 193 (317)
Q Consensus 184 LavP~~~~~~ 193 (317)
.||.+....+
T Consensus 78 ~at~d~~~n~ 87 (457)
T PRK10637 78 AATDDDAVNQ 87 (457)
T ss_pred ECCCCHHHhH
Confidence 9999987755
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=91.84 E-value=0.53 Score=46.38 Aligned_cols=94 Identities=19% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCc---eecCCCcCCHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGF---TEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~---~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+| +.+||+|+|-+|.==.+..++. |++|++..+.+.+ .+++.+ .|. ++.-....-.+++...-|.++-
T Consensus 181 pG-~~vgI~GlGGLGh~aVq~AKAM------G~rV~vis~~~~k-keea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~ 252 (360)
T KOG0023|consen 181 PG-KWVGIVGLGGLGHMAVQYAKAM------GMRVTVISTSSKK-KEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGID 252 (360)
T ss_pred CC-cEEEEecCcccchHHHHHHHHh------CcEEEEEeCCchh-HHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcce
Confidence 68 9999999998887666777777 9998766655433 344443 553 2200000112334445566665
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+++.- ...-++....+||++-.++.+
T Consensus 253 ~v~~~-a~~~~~~~~~~lk~~Gt~V~v 278 (360)
T KOG0023|consen 253 TVSNL-AEHALEPLLGLLKVNGTLVLV 278 (360)
T ss_pred eeeec-cccchHHHHHHhhcCCEEEEE
Confidence 55532 122344455566655554433
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=91.75 E-value=1.5 Score=39.99 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceecCCCcCCHHhh--cCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~--v~~ADvVILa 185 (317)
+| .+|.|.|.|.+|.+..+.++.. |.+ |+ ..+.+.+..+.+.+.|..+ ......++. -...|+|+-+
T Consensus 97 ~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi-~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~d~vl~~ 166 (277)
T cd08255 97 LG-ERVAVVGLGLVGLLAAQLAKAA------GAREVV-GVDPDAARRELAEALGPAD--PVAADTADEIGGRGADVVIEA 166 (277)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEE-EECCCHHHHHHHHHcCCCc--cccccchhhhcCCCCCEEEEc
Confidence 57 8999999999999999999988 887 54 4444444456777777221 111111111 1358999987
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.... .+.+....++++..+++.+
T Consensus 167 ~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 167 SGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred cCChH---HHHHHHHHhcCCcEEEEEe
Confidence 76433 4555666777777666554
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=91.70 E-value=0.64 Score=45.71 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=49.8
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| .||++||-+ ++..|++..+... |+++.+...+. +...+ .++..|... ....+++++
T Consensus 151 g~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea 221 (331)
T PRK02102 151 GPLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKI--TITEDPEEA 221 (331)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 45788 999999987 7888999988888 99876664332 11111 233355321 114689999
Q ss_pred cCcCCEEEEcc
Q 021114 176 ISGSDLVLLLI 186 (317)
Q Consensus 176 v~~ADvVILav 186 (317)
+++||+|..-+
T Consensus 222 ~~~aDvvyt~~ 232 (331)
T PRK02102 222 VKGADVIYTDV 232 (331)
T ss_pred hCCCCEEEEcC
Confidence 99999999853
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.68 Score=45.83 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCC---ceecCCCcCCHHhhcC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG---FTEENGTLGDIYETIS 177 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G---~~~~~~~~~~~~e~v~ 177 (317)
..|+| .||++||- -++..|++..+... |+++.+...+. ....+.+.+.| +.. ..+++|+++
T Consensus 190 G~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~ 258 (348)
T PLN02342 190 GRLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVK 258 (348)
T ss_pred CCcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhC
Confidence 45788 99999996 46888888888877 99876664332 22233444444 222 468999999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
+||+|..-.
T Consensus 259 ~aDVvy~~~ 267 (348)
T PLN02342 259 GADVVYTDV 267 (348)
T ss_pred CCCEEEECC
Confidence 999999874
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.5 Score=43.04 Aligned_cols=92 Identities=20% Similarity=0.211 Sum_probs=59.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
.| .+|.|.|.|.+|...++.++.. |.+|++..+.+++..+.+++.|....- ...+ ..+.....|+|+-+
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i-~~~~~~~v~~~~~~~D~vid~ 249 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFL-VTTDSQKMKEAVGTMDFIIDT 249 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEE-cCcCHHHHHHhhCCCcEEEEC
Confidence 57 8999999999999999999999 988766555444445566677763200 0111 22233457999988
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+.... .+++..+.++++..++..
T Consensus 250 ~G~~~---~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 250 VSAEH---ALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred CCcHH---HHHHHHHhhcCCCEEEEE
Confidence 76432 344445556666665544
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=2.2 Score=37.82 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| ++|.|.|. |.+|..+++.|.+. |++|++..|+.+
T Consensus 2 ~~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 2 RLKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred CcCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 3678 99999995 77999999999998 999877776543
|
|
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.87 Score=44.63 Aligned_cols=96 Identities=18% Similarity=0.123 Sum_probs=52.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHHCCcee---------cC------CC---c---C
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTE---------EN------GT---L---G 170 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~---------~~------~~---~---~ 170 (317)
+|||+|+|.||..+.+.|.+.- .+.+++|.-.++. +.+.+....+++-+. ++ +. . .
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 5899999999999999987640 0013565433332 222233333322110 00 00 1 1
Q ss_pred CHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 171 DIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 171 ~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++++.- .++|+|+.|++.....+...+. ++.|+.+++.++
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~---l~aGa~~V~~Sa 121 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGERH---IRAGAKRVLFSH 121 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHHH---HHcCCeEEEecC
Confidence 333321 4899999999987766655433 345666555443
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.6 Score=46.87 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.0
Q ss_pred EEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+|-|||.|-.|.+ +|+.|++. |++|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987655443322333445576531 11223457789999885
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.85 Score=44.91 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=49.3
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~v 176 (317)
.++| .+|++||-+ ++..|++..+... |+++.+...+. ..-. +.+.+.|... ....+++|++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i--~~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNI--TLTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 4788 999999976 6899999998888 99876664332 1111 2234456321 1246999999
Q ss_pred CcCCEEEEc
Q 021114 177 SGSDLVLLL 185 (317)
Q Consensus 177 ~~ADvVILa 185 (317)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999985
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=91.28 E-value=0.83 Score=42.40 Aligned_cols=88 Identities=18% Similarity=0.162 Sum_probs=57.3
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcC---cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETIS---GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~---~AD 180 (317)
.+| ++|.-||+|. | .++..+.+. |...+++.+.++...+.|++ .++.. .-++.. ..|
T Consensus 118 ~~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~-------~~~~~~~~~~fD 181 (250)
T PRK00517 118 LPG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL-------NVYLPQGDLKAD 181 (250)
T ss_pred CCC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc-------eEEEccCCCCcC
Confidence 467 9999999998 5 455556665 65445677777665555543 23310 001111 579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+..........+++++...||||..++.+
T Consensus 182 ~Vvani~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 182 VIVANILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred EEEEcCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 9887665555566788999999999988765
|
|
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.6 Score=42.18 Aligned_cols=94 Identities=16% Similarity=0.146 Sum_probs=58.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcCcCCEEEEcc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~v~~ADvVILav 186 (317)
+| .++.|+|.|.+|...++.++.. |.++++..+.+++....+.+.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 67 8999999999999999999998 98776655544333233345675320 000 001222334579999888
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.... .+++....++++..++..+
T Consensus 253 g~~~---~~~~~~~~l~~~G~iv~~G 275 (357)
T PLN02514 253 PVFH---PLEPYLSLLKLDGKLILMG 275 (357)
T ss_pred CchH---HHHHHHHHhccCCEEEEEC
Confidence 7432 3444555677777666544
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.78 Score=48.56 Aligned_cols=72 Identities=22% Similarity=0.202 Sum_probs=50.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+.+.+.|+.....+
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 398 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNC 398 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCC
Confidence 57 9999999999999999999999 999887765421 02344556675421110
Q ss_pred ----cCCHHhhcCcCCEEEEccC
Q 021114 169 ----LGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 169 ----~~~~~e~v~~ADvVILavP 187 (317)
..+.++...+.|.|++++-
T Consensus 399 ~v~~~i~~~~~~~~~DavilAtG 421 (654)
T PRK12769 399 EVGKDISLESLLEDYDAVFVGVG 421 (654)
T ss_pred EeCCcCCHHHHHhcCCEEEEeCC
Confidence 1134555668999999874
|
|
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.79 Score=46.13 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEec-----c---chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021114 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (317)
Q Consensus 107 ~l~GikkIGIIG~-----G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (317)
.++| +||+|+|- | ++..|++..+... |+++.+...++ +...+. +.+.|... ....
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i--~~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSF--RQVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 3777 89999986 4 5668888888887 99887665442 121222 34455321 0146
Q ss_pred CHHhhcCcCCEEEEcc
Q 021114 171 DIYETISGSDLVLLLI 186 (317)
Q Consensus 171 ~~~e~v~~ADvVILav 186 (317)
+++|++++||+|..-+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 9999999999999874
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.67 Score=46.28 Aligned_cols=88 Identities=11% Similarity=0.035 Sum_probs=52.9
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--c-----------------ccH---HHHHH--
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--S-----------------RSF---AEARA-- 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~-----------------~s~---~~A~~-- 159 (317)
...|+. .+|.|||+|-+|..++++|... |+ ++++.++.. . +.. +...+
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467788 9999999999999999999998 76 333332210 0 000 01111
Q ss_pred CCceec--CCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 021114 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 160 ~G~~~~--~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~ 199 (317)
..+..+ .... .+..+.+.+.|+||.++=.-....++++..
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111100 0111 234567899999998887766656777654
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.42 Score=48.33 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi 144 (317)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999998 99876
|
|
| >PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.3 Score=42.99 Aligned_cols=90 Identities=9% Similarity=0.168 Sum_probs=67.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP~ 188 (317)
.+|.|.| .|.-|...-..+++. |-+++.|...+.. ...-.|+.. +.++.|+-.. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 899999999999999 9888888766420 011246653 5688887765 7999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
....+.+++.... .-..++++++||.
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~ 105 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCC
Confidence 9998888876652 2244778899985
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=1.5 Score=41.77 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .++.|.|.|.+|...++.++.. |.++++..+.+++..+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999998 98754555444455566666775
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=91.06 E-value=3.9 Score=32.35 Aligned_cols=94 Identities=17% Similarity=0.190 Sum_probs=54.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH----HCCceecCCCcCC----HHhhcCcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGD----IYETISGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~~----~~e~v~~AD 180 (317)
++ ++|.=||+|. |. ++..+.+.. +...+++.+.++...+.++ ..+.....-...+ ........|
T Consensus 19 ~~-~~vldlG~G~-G~-~~~~l~~~~-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGS-GS-ITIEAARLV-----PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCC-CH-HHHHHHHHC-----CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 36 7899999998 33 333333320 2223466766555444432 2222100000112 122335799
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
+|++..++....++++++.+.||+|..++.
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987776667889999999999887663
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.8 Score=40.97 Aligned_cols=93 Identities=20% Similarity=0.184 Sum_probs=57.1
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceec-CCCcCCHH---hhcC--cCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~---e~v~--~AD 180 (317)
.+| .+|.|+|.|.+|...++.++.. |.+ |++ .+.+++..+.+++.|...- +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~-~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIG-VDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEE-ECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 9999999999999999999998 987 654 4444455667777775210 00001111 2222 578
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+-++..... +.+....++++..++..
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~~ 261 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVLV 261 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEEE
Confidence 88888775432 23334455565555543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=91.03 E-value=0.84 Score=44.42 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCE
Q 021114 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 107 ~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADv 181 (317)
.++| .+|++||= +++..|++..+... |+ ++.+.....- ...... ..+.. ..++++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 89999997 69999999999988 98 7766543321 100111 12332 4689999999999
Q ss_pred EEE
Q 021114 182 VLL 184 (317)
Q Consensus 182 VIL 184 (317)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 987
|
|
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.03 E-value=1.7 Score=42.14 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=56.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+. ..|+|
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 47 8999999999999999999988 98423444444556677788886320 000112222121 47888
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+-++.... .++.....++++..++..
T Consensus 264 id~~G~~~---~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 264 FEMAGSVP---ALETAYEITRRGGTTVTA 289 (371)
T ss_pred EECCCChH---HHHHHHHHHhcCCEEEEE
Confidence 88875432 333334455555555433
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.4 Score=39.94 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| |++.|+| .|-+|.++|+.|.+. |++|++..++.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~ 42 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAE 42 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcH
Confidence 4678 9999999 589999999999998 998876655443
|
|
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.42 Score=46.67 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=40.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CCceec----CCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGFTEE----NGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~~~~----~~~~~~~~e~v~~ADvVILa 185 (317)
+||+|||.|.+|.++|..|... +.+-++.+.+.......-.+.+ ...... .-..+...+.+++||+|+++
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 1232455555442211111111 110000 00011125678999999998
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 6
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.82 E-value=1.5 Score=43.03 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=47.4
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hh-hhcCCceEEEEecCC-c---------cc-HHHHHHCCceec--C--C-CcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKG-S---------RS-FAEARAAGFTEE--N--G-TLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~-~~~~G~~Vivg~r~~-~---------~s-~~~A~~~G~~~~--~--~-~~~~ 171 (317)
.+|+|+|+|++|..+++.|.+. +. ..|..++|+...+++ . +. .+...+.|.... + . ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999998773 11 122224443222211 0 00 111111121100 0 0 0126
Q ss_pred HHhhc--CcCCEEEEccCCchHHHHHHHHH
Q 021114 172 IYETI--SGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 172 ~~e~v--~~ADvVILavP~~~~~~vl~ei~ 199 (317)
.+|++ .++|+||=+++.....+++.+.+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~al 112 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEAL 112 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHHH
Confidence 67776 58999999997765555555443
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.3 Score=40.50 Aligned_cols=38 Identities=21% Similarity=0.074 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
..++| +++-|.|. |-+|.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 2 IGLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 45788 99999995 89999999999999 99987776653
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.5 Score=36.61 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=58.1
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhh-----cCcCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~-----v~~ADv 181 (317)
-+| .+|.|.|.|.+|.++++.++.. |.+|+...++ +...+.+++.|...- +....+..+. -...|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 457 8999999999999999999988 8877555444 344555555553210 0001122222 246899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++... ..++.....++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888763 23444555666666665444
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.28 E-value=1.8 Score=42.22 Aligned_cols=85 Identities=20% Similarity=0.325 Sum_probs=52.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |.. |+ ..+.+++..+.+++.|...- +... .+..+.+. ..
T Consensus 198 ~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi-~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~ 269 (381)
T PLN02740 198 AG-SSVAIFGLGAVGLAVAEGARAR------GASKII-GVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGV 269 (381)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCCcEE-EEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 47 8999999999999999999998 984 54 44444556777888876310 0000 01222221 47
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKP 204 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~ 204 (317)
|+|+=++-... .+.+.+..+++
T Consensus 270 dvvid~~G~~~---~~~~a~~~~~~ 291 (381)
T PLN02740 270 DYSFECAGNVE---VLREAFLSTHD 291 (381)
T ss_pred CEEEECCCChH---HHHHHHHhhhc
Confidence 88888776432 33333344545
|
|
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.1 Score=43.19 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~ 147 (317)
+.-|.. .+|.|||+|-+|..+|++|... |.. +.+.+
T Consensus 14 q~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 14 MKKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 456677 8999999999999999999998 873 44444
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >PRK10083 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=3 Score=39.28 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=58.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHh-hhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC----cCCE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~----~ADv 181 (317)
-+| .+|.|+|.|.+|...++.++. . |.++++..++.++..+.+.+.|+..- +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999999988885 6 87655656555556677777776320 101112334332 3467
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|+-++... ..+.+....++++..+++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~~ 258 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVLM 258 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEE
Confidence 77777632 2344555566666665544
|
|
| >TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.78 Score=39.76 Aligned_cols=80 Identities=19% Similarity=0.169 Sum_probs=48.6
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~ 192 (317)
++.|+|.|..|..++..|++. |++++...+.+.... ...-.|+..- +...++.+..++.|.+++++++....
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pvl-g~~~~l~~~~~~~~~~iiai~~~~~~ 72 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPVL-GGDEDLLRYPPDEVDLVVAIGDNKLR 72 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccEE-CCHHHHhhhcccccEEEEEcCCHHHH
Confidence 378999999999999999988 998766665542211 1112344320 11122334455578899999755543
Q ss_pred -HHHHHHHh
Q 021114 193 -DNYEKIFS 200 (317)
Q Consensus 193 -~vl~ei~~ 200 (317)
++++.+..
T Consensus 73 ~~i~~~l~~ 81 (201)
T TIGR03570 73 RRLFEKLKA 81 (201)
T ss_pred HHHHHHHHh
Confidence 35555443
|
These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff. |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.6 Score=50.43 Aligned_cols=111 Identities=18% Similarity=0.200 Sum_probs=67.8
Q ss_pred hhhhhhcccccchhhhhhcCCCccc------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecC
Q 021114 78 VFKKDAISLANRDEFIVRGGRDLFK------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK 149 (317)
Q Consensus 78 ~~~~~~~~~~~~~e~~v~~G~w~f~------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~ 149 (317)
+|+...+++.+-+|+ ++ =|+... ....-|+. .+|+|||+| +|+.+|..|... |. ++++.+..
T Consensus 71 pw~~~~v~~~~~~~~-~~-~r~~Rn~~~ig~~~Q~~L~~-~~V~IvG~G-lGs~~a~~Lara------GvvG~l~lvD~D 140 (722)
T PRK07877 71 PWRRTVVHLLGPREF-RA-VRLDRNRNKITAEEQERLGR-LRIGVVGLS-VGHAIAHTLAAE------GLCGELRLADFD 140 (722)
T ss_pred cchhheeecCCHHHh-hH-HHhhchhhhCCHHHHHHHhc-CCEEEEEec-HHHHHHHHHHHc------cCCCeEEEEcCC
Confidence 799999999998887 21 133221 14677888 999999999 899999999988 63 34444321
Q ss_pred -----------------Cc-ccHHHHHH-----CCceec--CC--CcCCHHhhcCcCCEEEEccCCchHHHHHHHH
Q 021114 150 -----------------GS-RSFAEARA-----AGFTEE--NG--TLGDIYETISGSDLVLLLISDAAQADNYEKI 198 (317)
Q Consensus 150 -----------------~~-~s~~~A~~-----~G~~~~--~~--~~~~~~e~v~~ADvVILavP~~~~~~vl~ei 198 (317)
+. +....++. ..+..+ +. +..+.+++++++|+|+=|+-.-...-++++.
T Consensus 141 ~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~ 216 (722)
T PRK07877 141 TLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGLTEDNVDAFLDGLDVVVEECDSLDVKVLLREA 216 (722)
T ss_pred EEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHH
Confidence 00 11101111 011100 00 1135677889999999888776555566644
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.08 E-value=1.2 Score=44.55 Aligned_cols=67 Identities=28% Similarity=0.293 Sum_probs=43.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH----HHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~----~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
+|.|||.|..|.+.|+.|.+. |++|.+.++....... ...+.|+...-+...+ ..+.+.+.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 9988766654332221 2334566431111111 11357789999884
|
|
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.04 E-value=2.3 Score=41.55 Aligned_cols=92 Identities=17% Similarity=0.232 Sum_probs=55.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|+..- +... .+..+.+. ..|
T Consensus 193 ~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCC
Confidence 47 8999999999999999999998 98645555544555677777786310 0000 01222221 468
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCC-cEEEE
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPN-SILGL 210 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~g-aiVi~ 210 (317)
+|+=++-... .+.+.+..++++ -.++.
T Consensus 266 ~vid~~G~~~---~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 266 YSFECVGDTG---IATTALQSCSDGWGLTVT 293 (378)
T ss_pred EEEECCCChH---HHHHHHHhhccCCCEEEE
Confidence 8887766432 233334445555 44443
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.93 E-value=1.8 Score=39.16 Aligned_cols=37 Identities=24% Similarity=0.241 Sum_probs=31.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
..++| ++|-|+|. |-+|.++++.|.+. |++|++..++
T Consensus 3 ~~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 3 QRLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred ccCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 34778 99999996 89999999999998 9988766654
|
|
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=89.92 E-value=1.1 Score=44.46 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=47.8
Q ss_pred ccCCCCEEEEEecc--------chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcC
Q 021114 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (317)
Q Consensus 107 ~l~GikkIGIIG~G--------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~ 170 (317)
.|+| +||+|+|.| ++..|++..+... |+++.+...+. +...+. +.+.|... ....
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~--~~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKF--NIVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeE--EEEc
Confidence 4778 899999864 3457788888877 99877665432 122222 33456331 1246
Q ss_pred CHHhhcCcCCEEEEcc
Q 021114 171 DIYETISGSDLVLLLI 186 (317)
Q Consensus 171 ~~~e~v~~ADvVILav 186 (317)
+++|+++++|+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 9999999999999874
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=2.7 Score=37.02 Aligned_cols=38 Identities=26% Similarity=0.190 Sum_probs=31.3
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++. ++|.|+| .|.+|.++++.|.+. |++|++..+++.
T Consensus 3 ~~~~-~~vlItGasg~iG~~l~~~l~~~------g~~v~~~~~~~~ 41 (249)
T PRK12825 3 SLMG-RVALVTGAARGLGRAIALRLARA------GADVVVHYRSDE 41 (249)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCeEEEEeCCCH
Confidence 4556 8999998 699999999999999 998776666544
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=89.80 E-value=2.2 Score=40.86 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=36.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++. +.+++..+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~-~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAI-DIDPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEE-cCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 9876544 444455667777775
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.74 E-value=2 Score=40.26 Aligned_cols=94 Identities=18% Similarity=0.133 Sum_probs=56.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~v~~ADvVI 183 (317)
+| .+|.|+|.|.+|.++++.++.. |.++++....+.+..+.+.+.|...- +....+..+ .-+..|+++
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEE
Confidence 57 8999999999999999999998 98733344343444555566664210 000011111 124689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
-++... ..+.+....++++..++..+
T Consensus 232 ~~~~~~---~~~~~~~~~l~~~G~~v~~g 257 (334)
T cd08234 232 EATGVP---KTLEQAIEYARRGGTVLVFG 257 (334)
T ss_pred ECCCCh---HHHHHHHHHHhcCCEEEEEe
Confidence 887642 24445555666666655443
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.4 Score=42.84 Aligned_cols=95 Identities=13% Similarity=0.042 Sum_probs=63.2
Q ss_pred cccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~ 175 (317)
..++| ++|+|.|+ .+-+..++..|++. |.+|.+++ +.-...+.....+... . + ..+
T Consensus 310 ~~~~~-~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~------g~~V~~~D-P~v~~~~~~~~~~~~~----~-~-~~~ 375 (425)
T PRK15182 310 INVEG-SSVLILGFTFKENCPDIRNTRIIDVVKELGKY------SCKVDIFD-PWVDAEEVRREYGIIP----V-S-EVK 375 (425)
T ss_pred CCCCC-CEEEEEEeEeCCCCCccccCcHHHHHHHHHhC------CCEEEEEC-CCCChhHHHHhcCccc----c-h-hhh
Confidence 35789 99999998 57788889999888 99877654 3211111112233321 1 1 234
Q ss_pred cCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv 214 (317)
+++||+|++++.-....++ ++++...|+...+|+|..++
T Consensus 376 ~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~ 415 (425)
T PRK15182 376 SSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYV 415 (425)
T ss_pred hcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCC
Confidence 7789999999998776653 45666667655688887765
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.96 Score=40.96 Aligned_cols=38 Identities=16% Similarity=0.155 Sum_probs=32.3
Q ss_pred ccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+..++| +++-|.|. |-||.++++.|.+. |++|++..++
T Consensus 4 ~~~~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 4 LFDLHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred cccCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 446789 99999996 78999999999999 9998776664
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.69 E-value=2.9 Score=40.43 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=52.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhc-----CcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v-----~~A 179 (317)
-+| .+|.|+|.|.+|...++.++.. |...++..+..+...+.+++.|...- +... .+..+.+ ...
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~ 255 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGV 255 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCC
Confidence 357 8999999999999999999998 98433444444455667777775210 0000 0112222 247
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKP 204 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~ 204 (317)
|+|+-++... ..+.+....+++
T Consensus 256 d~vid~~g~~---~~~~~~~~~l~~ 277 (365)
T cd08277 256 DYSFECTGNA---DLMNEALESTKL 277 (365)
T ss_pred CEEEECCCCh---HHHHHHHHhccc
Confidence 8888777643 234455556654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.1 Score=45.20 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.2
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
+|+| ++|+|=|+||.|.-.|+.|.+. |.+|+...++..
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 4999 9999999999999999999988 998877666543
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=89.63 E-value=1.2 Score=42.83 Aligned_cols=76 Identities=17% Similarity=0.125 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH---HHC---C--ceecCC-CcCCHHhh
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RAA---G--FTEENG-TLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---~~~---G--~~~~~~-~~~~~~e~ 175 (317)
..+++ ++|.|.|. |-+|..+++.|.+. |++|+...|......... ... . +...|- ...+++++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 45678 99999996 99999999999999 998876665432211110 111 1 111010 01235667
Q ss_pred cCcCCEEEEccCC
Q 021114 176 ISGSDLVLLLISD 188 (317)
Q Consensus 176 v~~ADvVILavP~ 188 (317)
++++|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8899999887643
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=89.63 E-value=3.8 Score=38.99 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=59.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHH----hhc--CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY----ETI--SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~----e~v--~~ADv 181 (317)
+| .+|.|.|.|.+|...++.++.. |..+++..+..++..+.+++.|...- +....+.. +.. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 47 8999999999999999999988 88544555555555677777775310 00011221 122 34799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
++-++... ..+.+....++++..++..
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v~~ 265 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTISNV 265 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEEe
Confidence 88877643 3455556667676666544
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.48 Score=43.85 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=43.3
Q ss_pred EEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhc------Cc-CCE
Q 021114 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETI------SG-SDL 181 (317)
Q Consensus 113 kIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v------~~-ADv 181 (317)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..++........ ++.+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4788885 99999999999998 999888777643211 112110001122 344455 45 899
Q ss_pred EEEccCCc
Q 021114 182 VLLLISDA 189 (317)
Q Consensus 182 VILavP~~ 189 (317)
|+++.|+.
T Consensus 71 v~~~~~~~ 78 (285)
T TIGR03649 71 VYLVAPPI 78 (285)
T ss_pred EEEeCCCC
Confidence 99888753
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.4 Score=42.73 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=49.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhc
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v 176 (317)
..++| .+|++||- +++..|++..+... |+++.+...+. ....+. +.+.|... ....++++++
T Consensus 144 g~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a~ 214 (304)
T TIGR00658 144 GKLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSV--ELTHDPVEAV 214 (304)
T ss_pred CCCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeE--EEEcCHHHHh
Confidence 34788 99999995 78889999988888 99876665332 111122 33455321 0146899999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-.
T Consensus 215 ~~aDvvy~~~ 224 (304)
T TIGR00658 215 KGADVIYTDV 224 (304)
T ss_pred CCCCEEEEcC
Confidence 9999999853
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.47 E-value=1 Score=45.42 Aligned_cols=86 Identities=20% Similarity=0.219 Sum_probs=56.4
Q ss_pred cCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--CceecCCCcCCHHhh
Q 021114 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (317)
Q Consensus 108 l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--G~~~~~~~~~~~~e~ 175 (317)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... ++. ...+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~----~~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVE----LESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCce----EeCCHHHH
Confidence 999 999999973 2344566667776 9987655432 12233222 123 25799999
Q ss_pred cCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEE
Q 021114 176 ISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGL 210 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~ 210 (317)
+++||++++++-.++..++ ++.+ .|| +.+|+|
T Consensus 374 ~~~aDaivi~tew~ef~~~d~~~~--~m~-~~~v~D 406 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLDFEKL--LMK-TPVVID 406 (414)
T ss_pred HhhCCEEEEeccHHHHhccChhhh--hcc-CCEEEe
Confidence 9999999999998877664 2333 554 345544
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.36 E-value=1.3 Score=41.34 Aligned_cols=72 Identities=21% Similarity=0.199 Sum_probs=45.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHHHH-CC------ceecCCC-cCCHHhhcC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARA-AG------FTEENGT-LGDIYETIS 177 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~-~G------~~~~~~~-~~~~~e~v~ 177 (317)
+| ++|.|.| .|-+|..+++.|.+. |++|++..++.... ...... .+ +...|-. ....+++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 46 8999999 799999999999999 99887666543321 111111 11 1110100 124567788
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
++|+||-+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 9999887654
|
|
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=89.33 E-value=2.4 Score=40.21 Aligned_cols=93 Identities=22% Similarity=0.243 Sum_probs=58.9
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
-+| .++.|.|.|.+|...++.++.. |.++++..++ .+..+.+.+.|...- -...+ ..+.-...|+|+-
T Consensus 168 ~~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~v-i~~~~~~~~~~~~~~~d~v~~ 238 (337)
T cd05283 168 GPG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEF-IATKDPEAMKKAAGSLDLIID 238 (337)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEE-ecCcchhhhhhccCCceEEEE
Confidence 357 8999999999999999999998 9876555444 344566666664310 00011 1122356899998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+++... .+++....++++..+++.+
T Consensus 239 ~~g~~~---~~~~~~~~l~~~G~~v~~g 263 (337)
T cd05283 239 TVSASH---DLDPYLSLLKPGGTLVLVG 263 (337)
T ss_pred CCCCcc---hHHHHHHHhcCCCEEEEEe
Confidence 887642 2445556666666655443
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=89.32 E-value=1.5 Score=43.19 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcC
Q 021114 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
.++| .||++||- +++..|++..|... .|+++.+...++ ....+.+.+.|... ....+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~--~~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMY-----KNVSFTLVSPKELAMPDYVISDIENAGHKI--TITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHh-----cCCEEEEECCccccCCHHHHHHHHHcCCeE--EEEcCHHHHHccC
Confidence 5889 99999997 58899988876643 177776664432 22234455555321 1246999999999
Q ss_pred CEEEEc
Q 021114 180 DLVLLL 185 (317)
Q Consensus 180 DvVILa 185 (317)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.28 E-value=3.1 Score=38.10 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhcC-------
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETIS------- 177 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~v~------- 177 (317)
++ +++.|.|. |-+|.++++.|.+. |++|++..|+.+ ..+...+.++..-.....+.+ ++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~-~l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVD-KMEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 46 89999994 89999999999998 998876665533 233232333221001123333 3333
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 6799998764
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.25 E-value=2.9 Score=40.60 Aligned_cols=46 Identities=22% Similarity=0.352 Sum_probs=36.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (317)
.| .+|.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|.
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi-~~~~~~~~~~~a~~~Ga 231 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRII-AIDINPAKFELAKKLGA 231 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCC
Confidence 47 8999999999999999999998 98 554 44444555677777776
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=2.8 Score=37.48 Aligned_cols=37 Identities=27% Similarity=0.238 Sum_probs=31.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
..++| +++.|.|. |-+|.++++.|.+. |++|++..|.
T Consensus 2 ~~~~~-k~vlItGasg~iG~~la~~l~~~------g~~vi~~~r~ 39 (250)
T PRK07774 2 GRFDD-KVAIVTGAAGGIGQAYAEALARE------GASVVVADIN 39 (250)
T ss_pred cccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 34678 99999996 99999999999998 9988776665
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=89.23 E-value=1.4 Score=46.86 Aligned_cols=74 Identities=24% Similarity=0.201 Sum_probs=49.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~ 167 (317)
-.| ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 357 9999999999999999999998 998877765421 0123445566543111
Q ss_pred Cc----CCHHhhcCcCCEEEEccCC
Q 021114 168 TL----GDIYETISGSDLVLLLISD 188 (317)
Q Consensus 168 ~~----~~~~e~v~~ADvVILavP~ 188 (317)
+. .+.++...+.|.||+++--
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtGa 288 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVGA 288 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcCC
Confidence 11 1344444569999998743
|
|
| >COG0031 CysK Cysteine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.19 E-value=2.3 Score=41.45 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=65.6
Q ss_pred cCCchHHHHHHHH--HhcCCCCcEEEEe-cCc---hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 186 ISDAAQADNYEKI--FSCMKPNSILGLS-HGF---LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 186 vP~~~~~~vl~ei--~~~lk~gaiVi~~-~Gv---~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++|.....++++. .-.++||.+|+.. +|- .+..... -.+.+++.+||.++..+.+.+-+. .|+
T Consensus 41 vKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa-----~~Gy~~iivmP~~~S~er~~~l~a------~GA 109 (300)
T COG0031 41 VKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAA-----AKGYRLIIVMPETMSQERRKLLRA------LGA 109 (300)
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHH-----HcCCcEEEEeCCCCCHHHHHHHHH------cCC
Confidence 4555555566633 2348999999964 443 3444333 247899999999999998887776 689
Q ss_pred eEEEEecc-CCCHHHHHHHHHHHHHcCC
Q 021114 260 NSSFAVHQ-DVDGRATNVALGWSVALGS 286 (317)
Q Consensus 260 ~~iitp~~-d~~~ea~e~a~~l~~alG~ 286 (317)
.++++|.. .....+.++++++......
T Consensus 110 evi~t~~~~g~~~~a~~~a~el~~~~p~ 137 (300)
T COG0031 110 EVILTPGAPGNMKGAIERAKELAAEIPG 137 (300)
T ss_pred EEEEcCCCCCchHHHHHHHHHHHHhCCC
Confidence 99999983 4367799999999999965
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.19 E-value=3.8 Score=37.12 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.++| +++-|.| .|-||.++|+.|.+. |++|++..++.+
T Consensus 5 ~~~~-k~~lVtG~s~gIG~~ia~~l~~~------G~~v~~~~r~~~ 43 (254)
T PRK06114 5 DLDG-QVAFVTGAGSGIGQRIAIGLAQA------GADVALFDLRTD 43 (254)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCcc
Confidence 4778 9999998 668999999999999 999887776543
|
|
| >KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.18 E-value=0.6 Score=45.05 Aligned_cols=98 Identities=14% Similarity=0.075 Sum_probs=66.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.-+.|+|.|.++........+.. .+=.+|.+|+++.+.+.+.|.... +..+-....+.+++++.+|+|+-++
T Consensus 139 ~vL~i~GsG~qA~~hi~ih~~~~---pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 139 CVLTIFGSGLQAFWHIYIHIKLI---PSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred eEEEEEcccchhHHHHHHHHHhc---ccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 34789999999999887665540 001268899999877777666221 1111112457889999999999998
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
+-..- -++ ...+|||+.|-.+++++.
T Consensus 216 lsteP-ilf---gewlkpgthIdlVGsf~p 241 (333)
T KOG3007|consen 216 LSTEP-ILF---GEWLKPGTHIDLVGSFKP 241 (333)
T ss_pred ccCCc-eee---eeeecCCceEeeeccCCc
Confidence 85431 111 245789999989999864
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.11 E-value=3.5 Score=37.25 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| |++.|+|. |.||.++++.|.+. |++|++..|..
T Consensus 6 ~~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 6 RLDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred ccCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 4678 99999994 79999999999998 99987776653
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.05 E-value=3 Score=37.06 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|+| .|-+|..+|+.|.+. |+++++..++.
T Consensus 2 ~~~~-~~vlItG~~~~iG~~la~~l~~~------g~~v~~~~~~~ 39 (245)
T PRK12937 2 TLSN-KVAIVTGASRGIGAAIARRLAAD------GFAVAVNYAGS 39 (245)
T ss_pred CCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEecCCC
Confidence 4678 9999999 599999999999999 99877665543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.4 Score=39.65 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=31.8
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
..++| +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 3 ~~~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (262)
T PRK13394 3 SNLNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQ 41 (262)
T ss_pred ccCCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCh
Confidence 34678 99999996 99999999999998 99887666553
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=89.00 E-value=0.69 Score=43.88 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi 144 (317)
.+++| ++|.|.|+|++|...|+.|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 67899 9999999999999999999998 99876
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.6 Score=44.52 Aligned_cols=71 Identities=14% Similarity=0.152 Sum_probs=48.9
Q ss_pred cCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 108 l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
|+| +||++||- +++..|++..+... .|+++.+...+. +...+.+.+.|... ....+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~-----~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v--~~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALY-----RGLKFTLVSPPTLEMPAYIVEQISRNGHVI--EQTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHh-----cCCEEEEECCCccccCHHHHHHHHhcCCeE--EEEcCHHHHhCCCC
Confidence 788 99999998 48899999987653 188876654332 12234444556322 12469999999999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999844
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=88.84 E-value=2 Score=43.60 Aligned_cols=75 Identities=24% Similarity=0.214 Sum_probs=50.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEE 165 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~ 165 (317)
..-.| ++|.|||.|..|.+.|..|++. |++|++..+.+. ...+...+.|+...
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~ 211 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFR 211 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEE
Confidence 34467 8999999999999999999998 998877765321 11234555665421
Q ss_pred CCCc----CCHHhhcCcCCEEEEccC
Q 021114 166 NGTL----GDIYETISGSDLVLLLIS 187 (317)
Q Consensus 166 ~~~~----~~~~e~v~~ADvVILavP 187 (317)
.++. .+.++.....|.||+++-
T Consensus 212 ~~~~v~~~~~~~~~~~~~d~vvlAtG 237 (471)
T PRK12810 212 TNVEVGKDITAEELLAEYDAVFLGTG 237 (471)
T ss_pred eCCEECCcCCHHHHHhhCCEEEEecC
Confidence 1111 133455567999999873
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=0.58 Score=45.82 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|++|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 46899999999999999999998 99988877653
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.2 Score=45.34 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=58.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEE---ecCCc------ccHHHHHHC--Cc--eecC-CCcCCHHh
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG---LRKGS------RSFAEARAA--GF--TEEN-GTLGDIYE 174 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg---~r~~~------~s~~~A~~~--G~--~~~~-~~~~~~~e 174 (317)
+. .||+|||.|.+|.++...|... |..-+.+ +...+ +..+.|++. ++ ..-+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 56 8999999999999999999998 7632222 22111 223445542 21 1101 11346788
Q ss_pred hcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEEEecCc
Q 021114 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++..|+|+..+-+.... +.+++..-.-+.+-+.....|.
T Consensus 201 v~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~ 242 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQ 242 (637)
T ss_pred hhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 999999999888755544 3444433222222234455554
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.76 E-value=1.5 Score=45.75 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=49.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHHHCCceecCCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENGT 168 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~~~~ 168 (317)
.+ ++|.|||.|..|.+.|..|++. |++|++..+... ...+...+.|+...-++
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 354 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNT 354 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCC
Confidence 57 8999999999999999999999 998877654321 11234555665421111
Q ss_pred -c---CCHHhhcCcCCEEEEccC
Q 021114 169 -L---GDIYETISGSDLVLLLIS 187 (317)
Q Consensus 169 -~---~~~~e~v~~ADvVILavP 187 (317)
. .+.+++..+.|.||+++-
T Consensus 355 ~v~~~~~~~~~~~~yD~vilAtG 377 (604)
T PRK13984 355 RVGKDIPLEELREKHDAVFLSTG 377 (604)
T ss_pred EeCCcCCHHHHHhcCCEEEEEcC
Confidence 1 133455557999999986
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.70 E-value=1.8 Score=38.49 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|.|. |.+|..+++.|.+. |++|++..|+.
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4778 99999997 89999999999998 99887766654
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=0.85 Score=40.71 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
++++ +++.|+| .|.+|.++++.|.+. |++|++..|+.
T Consensus 2 ~~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 2 RLEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred CcCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 4678 9999999 589999999999999 99987766654
|
|
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=88.59 E-value=0.91 Score=43.99 Aligned_cols=62 Identities=24% Similarity=0.233 Sum_probs=39.6
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
+|||||.|-.|..+++.+++. |+++++.+... ......+ ..-+.. ...| +.++++.+|+|..
T Consensus 1 ~igiiG~gql~~~l~~aa~~l------G~~v~~~d~~~~~p~~~~a-d~~~~~---~~~d~~~i~~~a~~~dvit~ 66 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPL------GIKVHVLDPDANSPAVQVA-DHVVLA---PFFDPAAIRELAESCDVITF 66 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHc------CCEEEEECCCCCCChhHhC-ceeEeC---CCCCHHHHHHHHhhCCEEEe
Confidence 589999999999999999999 99876654432 1221112 111111 1234 5567788898743
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.58 E-value=4.5 Score=35.58 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.++| +++.|+| .|.+|.++++.|.+. |++|++..|+.
T Consensus 4 ~~~~-k~vlItGatg~iG~~la~~l~~~------G~~v~~~~r~~ 41 (239)
T PRK12828 4 SLQG-KVVAITGGFGGLGRATAAWLAAR------GARVALIGRGA 41 (239)
T ss_pred CCCC-CEEEEECCCCcHhHHHHHHHHHC------CCeEEEEeCCh
Confidence 4678 9999999 599999999999998 99877666643
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=88.50 E-value=0.78 Score=48.33 Aligned_cols=73 Identities=22% Similarity=0.304 Sum_probs=47.6
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH---H-----CC--------ceecCCC
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---A-----AG--------FTEENGT 168 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~---~-----~G--------~~~~~~~ 168 (317)
...+| ++|.|.|. |.+|..+++.|.+. |++|++..|..++....+. + .| ++. +.
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~--gD 146 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVE--CD 146 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEE--ec
Confidence 34457 89999994 99999999999998 9998777765433211111 0 11 111 12
Q ss_pred cCC---HHhhcCcCCEEEEccC
Q 021114 169 LGD---IYETISGSDLVLLLIS 187 (317)
Q Consensus 169 ~~~---~~e~v~~ADvVILavP 187 (317)
+.+ +++++.++|+||.+.-
T Consensus 147 LtD~esI~~aLggiDiVVn~AG 168 (576)
T PLN03209 147 LEKPDQIGPALGNASVVICCIG 168 (576)
T ss_pred CCCHHHHHHHhcCCCEEEEccc
Confidence 333 3456788999998864
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=88.47 E-value=4.3 Score=39.68 Aligned_cols=97 Identities=15% Similarity=0.232 Sum_probs=60.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcC-CHHhhc----C--cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLG-DIYETI----S--GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~-~~~e~v----~--~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |...+++.+.++...+.+++. +...-+.... +..+.+ . ..|
T Consensus 184 ~g-~~VlV~g~G~vG~~~~~la~~~------g~~~vi~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PG-DTVAVWGCGPVGLFAARSAKLL------GAERVIAIDRVPERLEMARSHLGAETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCcEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 57 8999999999999999999998 874334554445556666665 3211011111 122222 2 479
Q ss_pred EEEEccCCc------------------hHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDA------------------AQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~------------------~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++... .-...+++....++++..+++.+
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 999887432 12346677778888887776554
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=4.3 Score=36.75 Aligned_cols=42 Identities=17% Similarity=0.121 Sum_probs=34.1
Q ss_pred ccccccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 101 FKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 101 f~~~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|.-+...|+| +++-|.|. |-+|.++++.|.+. |++|++..+.
T Consensus 6 ~~~~~~~l~~-k~vlItGas~gIG~~ia~~l~~~------G~~v~~~~~~ 48 (258)
T PRK06935 6 FSMDFFSLDG-KVAIVTGGNTGLGQGYAVALAKA------GADIIITTHG 48 (258)
T ss_pred hccccccCCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEeCC
Confidence 4434556899 99999995 78999999999998 9988777665
|
|
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.41 E-value=3 Score=39.05 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=58.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .++.|.|.|.+|..+++.++.. |.++++..+.. +..+.+.+.|... .....+..-+..|+++.+.+.
T Consensus 167 ~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~---~~~~~~~~~~~vD~vi~~~~~ 235 (329)
T cd08298 167 PG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW---AGDSDDLPPEPLDAAIIFAPV 235 (329)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE---EeccCccCCCcccEEEEcCCc
Confidence 56 8999999999999999999988 98876555543 4456666677532 011111112357888887654
Q ss_pred chHHHHHHHHHhcCCCCcEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
. ..+++....++++..++..
T Consensus 236 ~---~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 236 G---ALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred H---HHHHHHHHHhhcCCEEEEE
Confidence 3 3566677777777666643
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.39 E-value=3.3 Score=39.96 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=55.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcC--CHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG--DIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~--~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |.++++.....++..+.+.+.|...- +.... +..+.+ ...|
T Consensus 183 ~g-~~vlI~g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~l~~~~~~~~d 255 (365)
T cd05279 183 PG-STCAVFGLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAKQLGATECINPRDQDKPIVEVLTEMTDGGVD 255 (365)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHhCCCeecccccccchHHHHHHHHhCCCCc
Confidence 47 8999999999999999999988 98655555544455566667775310 00001 111111 2467
Q ss_pred EEEEccCCchHHHHHHHHHhcCC-CCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMK-PNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk-~gaiVi~~ 211 (317)
+|+-++... ..+.+....++ ++..++..
T Consensus 256 ~vid~~g~~---~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 256 YAFEVIGSA---DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred EEEECCCCH---HHHHHHHHHhccCCCEEEEE
Confidence 777766432 23444455555 66555533
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall |
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=88.37 E-value=2.3 Score=38.50 Aligned_cols=38 Identities=21% Similarity=0.039 Sum_probs=31.8
Q ss_pred ccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
--.++| |++.|.| .|.+|.++|+.|.+. |.+|++..+.
T Consensus 5 ~~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 5 NPGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred CcccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 346789 9999999 589999999999998 9988766554
|
|
| >COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.35 E-value=4.1 Score=39.01 Aligned_cols=160 Identities=17% Similarity=0.221 Sum_probs=89.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-----HHH---HHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-----AEA---RAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-----~~A---~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|.|. |.||+.+.+.+... .++++.-+.++..+.. .++ -..|+.. ..++.....++|++
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV~ 73 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADVL 73 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCEE
Confidence 78999997 99999999999876 1456555544432211 111 1123332 23567778899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhh-cccccCCCc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQ-GKEINGAGI 259 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~-G~e~~g~G~ 259 (317)
|=-+-|....++++-...+= -.+|+=+.|++-..++.. ..+.+.+.+| ..||+.--. +..+-++ .+-..+..+
T Consensus 74 IDFT~P~~~~~~l~~~~~~~--~~lVIGTTGf~~e~~~~l-~~~a~~v~vv-~a~NfSiGvnll~~l~~~aak~l~~~Di 149 (266)
T COG0289 74 IDFTTPEATLENLEFALEHG--KPLVIGTTGFTEEQLEKL-REAAEKVPVV-IAPNFSLGVNLLFKLAEQAAKVLDDYDI 149 (266)
T ss_pred EECCCchhhHHHHHHHHHcC--CCeEEECCCCCHHHHHHH-HHHHhhCCEE-EeccchHHHHHHHHHHHHHHHhcCCCCE
Confidence 98888877777777544432 235666788864333321 1122334443 456664322 1111111 111111222
Q ss_pred eEEEEecc-----CCCHHHHHHHHHHHHHcC
Q 021114 260 NSSFAVHQ-----DVDGRATNVALGWSVALG 285 (317)
Q Consensus 260 ~~iitp~~-----d~~~ea~e~a~~l~~alG 285 (317)
-. +--|. -+++.++.+++.+.+..|
T Consensus 150 EI-iE~HHr~K~DAPSGTAl~lae~ia~~~~ 179 (266)
T COG0289 150 EI-IEAHHRHKKDAPSGTALKLAEAIAEARG 179 (266)
T ss_pred Ee-hhhhcccCCCCCcHHHHHHHHHHHHhhc
Confidence 22 22332 456889999999999998
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=88.35 E-value=1 Score=34.07 Aligned_cols=32 Identities=28% Similarity=0.235 Sum_probs=28.3
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+|.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~------g~~vtli~~~~ 32 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAEL------GKEVTLIERSD 32 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHT------TSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHHh------CcEEEEEeccc
Confidence 689999999999999999999 99888776653
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=88.30 E-value=0.93 Score=47.65 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=46.3
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCC
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSD 180 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~AD 180 (317)
+...... |+|||||-|..|.-+++.+++. |++|++.+.. .............. ....| +.++++++|
T Consensus 16 ~~~~~~~-k~IgIIGgGqlg~mla~aA~~l------G~~Vi~ld~~-~~apa~~~AD~~~v--~~~~D~~~l~~~a~~~d 85 (577)
T PLN02948 16 PVHGVSE-TVVGVLGGGQLGRMLCQAASQM------GIKVKVLDPL-EDCPASSVAARHVV--GSFDDRAAVREFAKRCD 85 (577)
T ss_pred cccCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-CCCchhhhCceeee--CCCCCHHHHHHHHHHCC
Confidence 3445667 9999999999999999999998 9987665443 22111111111111 11234 445567899
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+|.....
T Consensus 86 vIt~e~e 92 (577)
T PLN02948 86 VLTVEIE 92 (577)
T ss_pred EEEEecC
Confidence 8866543
|
|
| >KOG1495 consensus Lactate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=88.27 E-value=2.7 Score=40.79 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=56.1
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCC----ceec-CCCcCCHHhhc
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEE-NGTLGDIYETI 176 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~-~~~~~~~~e~v 176 (317)
+..+++. .||.|+|.|..|.+.|..+... |. ++.+.+-...+..-++.... |... +-.....-.+-
T Consensus 14 ~~~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~s 86 (332)
T KOG1495|consen 14 EEKEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVS 86 (332)
T ss_pred ccccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCccccc
Confidence 3455566 8999999999999999998887 65 33333322222222222211 1100 00011122456
Q ss_pred CcCCEEEEccCCchH------------HHHHHHHHhc---CCCCcEEEEec
Q 021114 177 SGSDLVLLLISDAAQ------------ADNYEKIFSC---MKPNSILGLSH 212 (317)
Q Consensus 177 ~~ADvVILavP~~~~------------~~vl~ei~~~---lk~gaiVi~~~ 212 (317)
+++|+||+..--.+. .++++.+.|. ..|++++++++
T Consensus 87 a~S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvS 137 (332)
T KOG1495|consen 87 ANSKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVS 137 (332)
T ss_pred CCCcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 789999997644332 1233444443 26788877655
|
|
| >COG4408 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.26 E-value=16 Score=36.59 Aligned_cols=169 Identities=14% Similarity=0.129 Sum_probs=102.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC--cccHHHHHHCCceec-----------------CCCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG--SRSFAEARAAGFTEE-----------------NGTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~--~~s~~~A~~~G~~~~-----------------~~~~~ 170 (317)
+.++-++|.|...--+|.-|+.. |- .+-+..|.+ ++++.+|.+.+-.-. |....
T Consensus 4 m~~vLllGtGpvaIQlAv~l~~h------~d~~lg~~~r~s~rse~l~qala~~~ql~l~~q~eahr~leg~~~id~~~k 77 (431)
T COG4408 4 MLPVLLLGTGPVAIQLAVDLSAH------GDARLGLYNRPSTRSERLKQALALTPQLYLQGQGEAHRQLEGSVTIDCYIK 77 (431)
T ss_pred ccceeEeecCcHHHHHHHHHHhc------cCceeeccCCCCchhHHHHHHHhcCCeEEEEeccHHHHhhcCceehhHHHh
Confidence 46789999999999999999887 53 333334432 234445544331110 11134
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHH----HhcCCCCcEEEEecCc--h--hhhhhhcccCCCCCccEEE--------
Q 021114 171 DIYETISGSDLVLLLISDAAQADNYEKI----FSCMKPNSILGLSHGF--L--LGHLQSIGLDFPKNIGVIA-------- 234 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~vl~ei----~~~lk~gaiVi~~~Gv--~--l~~~~~~~~~l~~~i~vV~-------- 234 (317)
+++++..+=|-+|++||-++..+++++| ++.+|. +|.++..+ . +.+... .+..++.||.
T Consensus 78 d~a~~~~dwqtlilav~aDaY~dvlqqi~~e~L~~vk~--viLiSptfGsn~lv~~~mn---k~~~daeViS~SsY~~dT 152 (431)
T COG4408 78 DLAQAVGDWQTLILAVPADAYYDVLQQIPWEALPQVKS--VILISPTFGSNLLVQNLMN---KAGRDAEVISLSSYYADT 152 (431)
T ss_pred hHHHhhchhheEEEEeecHHHHHHHhcCCHhHhccccE--EEEecccccccHHHHHHHh---hhCCCceEEEeehhcccc
Confidence 6777888889999999999999988753 344432 33344322 2 333332 4445677775
Q ss_pred --eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc-EEecCchhhhhc
Q 021114 235 --VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYKS 300 (317)
Q Consensus 235 --vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~-~~~tT~~~e~~~ 300 (317)
++-..|-+..-..+++ .-+ +.. +..+....+...+.+..+|-.- ++++-++.|++.
T Consensus 153 k~id~~~p~~alTkavKk--------riY-lgs-~~~ns~~~e~l~~v~aq~~I~v~~~esp~~AEtrn 211 (431)
T COG4408 153 KYIDAEQPNRALTKAVKK--------RIY-LGS-QHGNSGSAEMLTAVLAQHGIDVEPCESPLAAETRN 211 (431)
T ss_pred eeecccCcchHHHHHHhH--------hee-ecc-CCCCChHHHHHHHHHHhcCCceEEcCChhhhhhcc
Confidence 4444555555455554 223 322 3333456677889999999754 577777777764
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.19 E-value=4.6 Score=37.85 Aligned_cols=45 Identities=18% Similarity=0.040 Sum_probs=36.0
Q ss_pred CCCcccccccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 97 GRDLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 97 G~w~f~~~~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+.|... .+.+++| ++|.|.| .|-||.++|+.|.+. |++|++..|.
T Consensus 4 ~~~~~~-~~~~~~~-k~vlItGas~gIG~~~a~~l~~~------G~~vi~~~r~ 49 (306)
T PRK06197 4 TKWTAA-DIPDQSG-RVAVVTGANTGLGYETAAALAAK------GAHVVLAVRN 49 (306)
T ss_pred CCCCcc-ccccCCC-CEEEEcCCCCcHHHHHHHHHHHC------CCEEEEEeCC
Confidence 455432 3567899 9999999 589999999999998 9988776665
|
|
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=88.16 E-value=3.8 Score=39.50 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=36.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|.|.+|...++.++.. |. +|++. ...++..+.+++.|.
T Consensus 187 ~g-~~VlV~G~g~vG~~a~q~ak~~------G~~~vi~~-~~~~~~~~~~~~~Ga 233 (369)
T cd08301 187 KG-STVAIFGLGAVGLAVAEGARIR------GASRIIGV-DLNPSKFEQAKKFGV 233 (369)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHcCC
Confidence 57 8999999999999999999988 98 56544 444455677777775
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.00 E-value=2 Score=48.82 Aligned_cols=82 Identities=23% Similarity=0.242 Sum_probs=59.4
Q ss_pred CcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--------------------ccHHHHH
Q 021114 99 DLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEAR 158 (317)
Q Consensus 99 w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--------------------~s~~~A~ 158 (317)
|..+-|+-.-.| ++|+|||.|.-|.+-|..|-+. |+.|+++.|++. +..+...
T Consensus 1774 wm~p~pp~~rtg-~~vaiigsgpaglaaadqlnk~------gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~ 1846 (2142)
T KOG0399|consen 1774 WMKPCPPAFRTG-KRVAIIGSGPAGLAAADQLNKA------GHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLE 1846 (2142)
T ss_pred CCccCCcccccC-cEEEEEccCchhhhHHHHHhhc------CcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHH
Confidence 544446677778 9999999999999999999999 999988887543 2223334
Q ss_pred HCCcee----cCCCcCCHHhhcCcCCEEEEccC
Q 021114 159 AAGFTE----ENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 159 ~~G~~~----~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.|+.- +-+...+++++.++-|.|++++-
T Consensus 1847 ~egi~f~tn~eigk~vs~d~l~~~~daiv~a~g 1879 (2142)
T KOG0399|consen 1847 QEGIRFVTNTEIGKHVSLDELKKENDAIVLATG 1879 (2142)
T ss_pred hhCceEEeeccccccccHHHHhhccCeEEEEeC
Confidence 455421 11223478899999999999863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 317 | ||||
| 3fr7_A | 525 | Ketol-Acid Reductoisomerase (Kari) In Complex With | 1e-114 | ||
| 1yve_I | 524 | Acetohydroxy Acid Isomeroreductase Complexed With N | 1e-113 | ||
| 1np3_A | 338 | Crystal Structure Of Class I Acetohydroxy Acid Isom | 6e-18 | ||
| 3ulk_A | 491 | E. Coli Ketol-Acid Reductoisomerase In Complex With | 1e-07 | ||
| 1yrl_A | 491 | Escherichia Coli Ketol-Acid Reductoisomerase Length | 1e-07 |
| >pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+ Length = 525 | Back alignment and structure |
|
| >pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph, Magnesium And Inhibitor Ipoha (N-Hydroxy-N- Isopropyloxamate) Length = 524 | Back alignment and structure |
|
| >pdb|1NP3|A Chain A, Crystal Structure Of Class I Acetohydroxy Acid Isomeroreductase From Pseudomonas Aeruginosa Length = 338 | Back alignment and structure |
|
| >pdb|3ULK|A Chain A, E. Coli Ketol-Acid Reductoisomerase In Complex With Nadph And Mg2+ Length = 491 | Back alignment and structure |
|
| >pdb|1YRL|A Chain A, Escherichia Coli Ketol-Acid Reductoisomerase Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 317 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 1e-118 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 2e-43 | |
| 1yrl_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 6e-40 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 4e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 1e-04 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* Length = 525 | Back alignment and structure |
|---|
Score = 349 bits (897), Expect = e-118
Identities = 212/236 (89%), Positives = 225/236 (95%)
Query: 72 LDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +E+IVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERG 307
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEYKSDIFGERG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERG 250
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 Length = 338 | Back alignment and structure |
|---|
Score = 150 bits (382), Expect = 2e-43
Identities = 65/195 (33%), Positives = 102/195 (52%), Gaps = 22/195 (11%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGV 232
++ +D+V++L D Q Y++ I +K + L +HGF + H + ++ V
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQV--VPRADLDV 124
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFTF 290
I + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 125 IMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTGII 179
Query: 291 ATTLEQEYKSDIFGE 305
TT + E ++D+FGE
Sbjct: 180 ETTFKDETETDLFGE 194
|
| >1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, knotted protein, oxidoreductase; 2.60A {Escherichia coli} Length = 491 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 6e-40
Identities = 61/203 (30%), Positives = 88/203 (43%), Gaps = 32/203 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF + K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNI-VEVGE--QIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYKSDIFGE 305
A ++ E KSD+ GE
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGE 221
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 4e-09
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSIGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 8e-05
Identities = 28/263 (10%), Positives = 74/263 (28%), Gaps = 88/263 (33%)
Query: 41 KSLRALKTTRG------RGSALGAQ-MASETALKTPFLLDFETSVFKKDAISLANRDEFI 93
++L L+ + GS G +A + L + +F ++L N +
Sbjct: 142 QALLELRPAKNVLIDGVLGS--GKTWVALDVCLSYKVQCKMDFKIF---WLNLKNCNS-- 194
Query: 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS-------------- 139
+ ++L I+ + + N++ + ++
Sbjct: 195 ---PETVLEMLQKLLYQIDPN-----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Query: 140 -----DI----VVK--------------------VGLRKGSRSFAEARAAGFTEE----- 165
++ + + + + T +
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 166 -----NGTLGDI-YETISGSDLVLLLIS-----DAAQADNYEKIFSCMKPNSILGLSHGF 214
+ D+ E ++ + L +I+ A DN++ + +C K +I+ S
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV-NCDKLTTIIESSLNV 365
Query: 215 L-----LGHLQSIGLDFPKNIGV 232
L + + FP + +
Sbjct: 366 LEPAEYRKMFDRLSV-FPPSAHI 387
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 1e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 100.0 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 100.0 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.95 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.83 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.82 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.8 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.79 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.73 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.72 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.71 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.69 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 99.67 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.67 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.66 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 99.66 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 99.65 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.64 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.64 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 99.63 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.63 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.63 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 99.63 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.61 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.6 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.6 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.59 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 99.59 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 99.59 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.59 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.59 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 99.58 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 99.57 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 99.57 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.57 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 99.57 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 99.56 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.56 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 99.56 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.54 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 99.54 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 99.54 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 99.54 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.53 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 99.53 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 99.53 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.53 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.52 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 99.52 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 99.52 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.51 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 99.51 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 99.5 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.5 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.49 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.49 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.48 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.48 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.48 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.47 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 99.47 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 99.46 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 99.45 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.44 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.44 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.44 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.43 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 99.43 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 99.43 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.4 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.4 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.4 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.4 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.38 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.06 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.37 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.36 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 99.35 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.34 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.33 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.33 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.31 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.31 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.31 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.31 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.3 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.29 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 99.29 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 99.28 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.27 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 99.26 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.25 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.25 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 99.25 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 99.24 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 99.22 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.22 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.22 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 99.22 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 99.21 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.2 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 99.2 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.19 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 99.19 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 99.15 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.15 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 99.09 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.06 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.05 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 99.01 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 98.99 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 98.97 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 98.97 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.96 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.94 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.93 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.92 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.91 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.82 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.82 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.8 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.8 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.78 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.77 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 98.76 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 98.76 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.73 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.72 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.7 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.69 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.66 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.65 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 98.63 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.61 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 98.61 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.59 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.58 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 98.57 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 98.52 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 98.52 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.51 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 98.42 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.38 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.34 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 98.29 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.29 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 98.29 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.27 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.26 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 98.24 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 98.23 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 98.23 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.23 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.22 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 98.22 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 98.18 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 98.17 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.16 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 98.15 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 98.13 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 98.13 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 98.13 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 98.11 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 98.11 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 98.11 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 98.11 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.1 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 98.08 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 98.07 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 98.07 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 98.06 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 98.06 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.05 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 98.03 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.02 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 98.01 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.99 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.98 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 97.97 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.97 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.97 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.96 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.95 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.93 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.92 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.92 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.91 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 97.88 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.85 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.83 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.83 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.83 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.82 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 97.81 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 97.8 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 97.79 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 97.78 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.78 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.78 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.76 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.74 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.74 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.72 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.72 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.7 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.69 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.67 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.67 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.64 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.64 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 97.64 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.63 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.61 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 97.6 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.6 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.6 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.59 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 97.58 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 97.57 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 97.57 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.55 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.54 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.54 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.52 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 97.51 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.5 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.5 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 97.49 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.48 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 97.48 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 97.48 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.47 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 97.47 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.47 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 97.42 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 97.41 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.4 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.4 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 97.4 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 97.38 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 97.36 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 97.36 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 97.36 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 97.35 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 97.35 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.32 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 97.28 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.26 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.26 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.23 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.23 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.2 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 97.19 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 97.18 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.18 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 97.17 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 97.16 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.15 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 97.15 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.15 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.11 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 97.1 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 97.08 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.07 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.06 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 97.05 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.04 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 97.03 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.01 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.0 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.99 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.99 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.99 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.91 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.9 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.89 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 96.88 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 96.87 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 96.84 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 96.83 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.79 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.79 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 96.78 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 96.76 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.76 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 96.76 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.75 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 96.73 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 96.71 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 96.7 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.67 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.63 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 96.62 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.57 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 96.57 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 96.55 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 96.54 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 96.53 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.47 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.47 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 96.45 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.43 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 96.4 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 96.37 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 96.35 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 96.3 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 96.29 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.23 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 96.22 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.19 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 96.14 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 96.13 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 96.07 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 96.02 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 95.99 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.94 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 95.89 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 95.88 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 95.85 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 95.84 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 95.81 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 95.8 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.76 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 95.76 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 95.71 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 95.7 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.7 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.68 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 95.67 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 95.65 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 95.64 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.63 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.58 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.56 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 95.5 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.47 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 95.47 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.45 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.43 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.41 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 95.39 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 95.38 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.37 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 95.35 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 95.31 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 95.3 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.29 | |
| 1ebf_A | 358 | Homoserine dehydrogenase; dinucleotide, NAD, dimer | 95.29 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 95.28 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 95.27 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 95.26 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 95.25 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.21 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.2 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 95.17 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 95.16 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 95.14 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.13 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 95.1 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.1 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 95.09 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.06 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.01 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 95.01 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 94.99 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 94.98 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.95 | |
| 4dpk_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.93 | |
| 4dpl_A | 359 | Malonyl-COA/succinyl-COA reductase; dinucleotide b | 94.93 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.93 | |
| 2f00_A | 491 | UDP-N-acetylmuramate--L-alanine ligase; amide bond | 94.88 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 94.87 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.75 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.73 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 94.73 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 94.71 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 94.67 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 94.56 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 94.53 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 94.48 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 94.47 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 94.46 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.45 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 94.45 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.44 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 94.44 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.42 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.39 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 94.38 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 94.37 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.32 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 94.21 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.19 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 94.13 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 93.97 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 93.96 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 93.95 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 93.95 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.95 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 93.94 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.91 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 93.91 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 93.88 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 93.88 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.87 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.81 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.77 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.77 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 93.76 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 93.72 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.66 | |
| 3hsk_A | 381 | Aspartate-semialdehyde dehydrogenase; candida albi | 93.64 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 93.64 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 93.62 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 93.59 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.58 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 93.57 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 93.55 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 93.55 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 93.52 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.49 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.49 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 93.48 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 93.42 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 93.41 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 93.38 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.36 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 93.3 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 93.29 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 93.27 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 93.27 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.26 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.26 | |
| 3tz6_A | 344 | Aspartate-semialdehyde dehydrogenase; asadh, ASD, | 93.23 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 93.17 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.15 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 93.07 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 93.06 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.06 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 93.06 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 93.06 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 93.04 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 93.02 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 93.01 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 93.0 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 92.95 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 92.91 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 92.86 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.83 | |
| 2x5j_O | 339 | E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid | 92.78 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 92.77 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 92.77 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 92.75 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 92.75 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.74 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 92.66 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 92.54 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 92.52 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 92.48 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 92.45 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 92.32 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 92.31 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.29 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 92.27 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 92.26 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 92.19 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.16 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.1 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 92.07 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.99 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 91.99 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 91.89 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 91.8 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 91.78 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.76 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 91.71 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 91.69 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 91.67 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 91.67 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 91.64 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 91.6 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 91.59 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 91.58 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 91.57 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 91.54 | |
| 2h1q_A | 270 | Hypothetical protein; ZP_00559375.1, structural ge | 91.47 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 91.43 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 91.42 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.42 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 91.34 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.32 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 91.25 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 91.22 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 91.21 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 91.19 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 91.11 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 91.08 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 90.99 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 90.94 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 90.91 |
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-50 Score=405.85 Aligned_cols=245 Identities=87% Similarity=1.297 Sum_probs=227.2
Q ss_pred ccccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
.+.++|+|++|.+|+++|++..|++|++|+|+|++++..|+|+|||||||+|+||.++|++|+++++++++|++|+++++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~g~~E~v~~~~~w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r 91 (525)
T 3fr7_A 12 MPSLDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLR 91 (525)
T ss_dssp ---CCCCCSSSCEEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred ccccccccccceeeEeecCCcceEEEeccccccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeC
Confidence 56799999999999999999999999999999998889999999999999999999999999999889999999999999
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC
Q 021114 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228 (317)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~ 228 (317)
+++++.+.+.+.|+...+++..+++|++++||+|||++||+.+.+++++++++|++|++|+++||+++.++++.+..+|+
T Consensus 92 ~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eVl~eI~p~LK~GaILs~AaGf~I~~le~~~i~~p~ 171 (525)
T 3fr7_A 92 KGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPK 171 (525)
T ss_dssp TTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHTTCCCCT
T ss_pred CchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChHHHHHHHHHHHHhcCCCCeEEEeCCCCHHHHhhhcccCCC
Confidence 88888899999999842233468999999999999999999999999999999999999999999999887755567888
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhh
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGE 308 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~i 308 (317)
+++||++|||+|++.+|++|.+|+++||+|++++|++++|+++++++.+++|+.++|+.++++||+++|+++||||||++
T Consensus 172 dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea~e~alala~aiG~~~vieTtf~eE~e~DLfgeqtv 251 (525)
T 3fr7_A 172 NISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGI 251 (525)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCHHHHHHHHHHHTTCSEEEECCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHHHHHHHHHHHHCCCCeeeeeeeeeehhHhhhhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcc
Q 021114 309 CFPTP 313 (317)
Q Consensus 309 l~g~~ 313 (317)
|||+-
T Consensus 252 LsG~~ 256 (525)
T 3fr7_A 252 LLGAV 256 (525)
T ss_dssp TTHHH
T ss_pred hcCcH
Confidence 99963
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-44 Score=357.34 Aligned_cols=214 Identities=32% Similarity=0.491 Sum_probs=196.0
Q ss_pred ccccccchhhhhhc-----ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEE
Q 021114 71 LLDFETSVFKKDAI-----SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (317)
Q Consensus 71 ~~~f~~~~~~~~~~-----~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Viv 145 (317)
.||||+++||.++. +|+..+|+ ...+..|+| |+|+|||+|++|.++|+|||++ |.+|++
T Consensus 2 ~ny~n~l~~~~~~~~~~~c~~m~~~eF---------~~~~~~lkg-K~IaVIGyGsQG~AqAlNLRDS------Gv~V~V 65 (491)
T 3ulk_A 2 ANYFNTLNLRQQLAQLGKCRFMGRDEF---------ADGASYLQG-KKVVIVGCGAQGLNQGLNMRDS------GLDISY 65 (491)
T ss_dssp CCTGGGSCHHHHHHHHTCCEECCGGGG---------TTTTGGGTT-SEEEEESCSHHHHHHHHHHHHT------TCEEEE
T ss_pred cchhccccHHHHHHHhccceeccHHHh---------cchhHHHcC-CEEEEeCCChHhHHHHhHHHhc------CCcEEE
Confidence 48999999998766 44555544 667899999 9999999999999999999999 999999
Q ss_pred EecCCc-----ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhh
Q 021114 146 GLRKGS-----RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (317)
Q Consensus 146 g~r~~~-----~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~ 220 (317)
+.|+++ ++++.|.+.|+. +.+.+|++++||+|++++||..+.+++++|.|+||+|++|..+|||++.+.
T Consensus 66 glr~~s~~e~~~S~~~A~~~Gf~-----v~~~~eA~~~ADvV~~L~PD~~q~~vy~~I~p~lk~G~~L~faHGFnI~~~- 139 (491)
T 3ulk_A 66 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEV- 139 (491)
T ss_dssp EECHHHHHTTCHHHHHHHHTTCE-----EEEHHHHGGGCSEEEECSCGGGHHHHHHHHGGGSCTTCEEEESSCHHHHTT-
T ss_pred EeCCCCcccccchHHHHHHCCCE-----ecCHHHHHHhCCEEEEeCChhhHHHHHHHHHhhCCCCCEEEecCccccccc-
Confidence 999543 789999999998 468999999999999999999999999999999999999999999988653
Q ss_pred hcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec--cCCCHHHHHHHHHHHHHcCCCc--EEecCchh
Q 021114 221 SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (317)
Q Consensus 221 ~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~--~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~ 296 (317)
+..+|++++||.++|++||+.+|++|++| .|.|++|+++ +|.++++++.+++|..++|+.| +++|||++
T Consensus 140 --~i~pp~dvdVimVAPKgpG~~VR~~y~~G-----~GvP~liAVhqeqD~sG~a~~~AlayA~aiG~~raGvieTTF~e 212 (491)
T 3ulk_A 140 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 212 (491)
T ss_dssp --CCCCCTTSEEEEEEESSCHHHHHHHHHTT-----CCCCEEEEECGGGCTTSCHHHHHHHHHHHHTGGGTCEEECCHHH
T ss_pred --ccccCCCcceEEeCCCCCcHHHHHHHHcC-----CCCceEEEEEeCCCCchhHHHHHHHHHHhcCCCcCceeeccHHH
Confidence 45889999999999999999999999998 8999999997 8999999999999999999985 79999999
Q ss_pred hhhccchhhhhhhcCcc
Q 021114 297 EYKSDIFGERGECFPTP 313 (317)
Q Consensus 297 e~~~dl~~e~~il~g~~ 313 (317)
||++||||||+||||+.
T Consensus 213 EtetDLfGEQaVLcGgl 229 (491)
T 3ulk_A 213 EVKSDLMGEQTILCGML 229 (491)
T ss_dssp HHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHhhHHHHHHHH
Confidence 99999999999999964
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-27 Score=228.27 Aligned_cols=188 Identities=35% Similarity=0.591 Sum_probs=166.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
...+++ ++|+|||+|+||.++|++|++. |++|++++++.+++.+.+.+.|+.. .++++++++||+|++
T Consensus 11 ~~~l~~-~~I~IIG~G~mG~alA~~L~~~------G~~V~~~~~~~~~~~~~a~~~G~~~-----~~~~e~~~~aDvVil 78 (338)
T 1np3_A 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLKV-----ADVKTAVAAADVVMI 78 (338)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCEE-----ECHHHHHHTCSEEEE
T ss_pred cchhcC-CEEEEECchHHHHHHHHHHHHC------cCEEEEEECChHHHHHHHHHCCCEE-----ccHHHHHhcCCEEEE
Confidence 467889 9999999999999999999999 9988887777655577888888863 388899999999999
Q ss_pred ccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 185 avP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
++|+..+.++++ ++.++++++++|++++|++. .... ...+.+++|++.||++|.+..+++|+.| +|.++++
T Consensus 79 avp~~~~~~v~~~~i~~~l~~~~ivi~~~gv~~-~~~~--~~~~~~~~vv~~~P~gp~~a~~~l~~~G-----~g~~~ii 150 (338)
T 1np3_A 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSI-HYNQ--VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (338)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHH-HTTS--SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred eCCcHHHHHHHHHHHHhhCCCCCEEEEcCCchh-HHHh--hcCCCCcEEEeccCCCCchhHHHHHhcc-----CCCeEEE
Confidence 999999988998 99999999999999999877 4443 2236678899999999999989999876 7899999
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCc--EEecCchhhhhccchhhhhhhcCc
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYKSDIFGERGECFPT 312 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~--~~~tT~~~e~~~dl~~e~~il~g~ 312 (317)
+|+++.++++.+.+++|++.+|..+ ++++++++|.+.|+|+++++|||+
T Consensus 151 ~~~~~~~~~a~~~~~~l~~~lG~~~agv~~~~~~~~~~~~~~~s~~~l~G~ 201 (338)
T 1np3_A 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETTFKDETETDLFGEQAVLCGG 201 (338)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECCHHHHHHHHHHHHHHTTTHH
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceEeechhcccchHHHHHHHHHhhh
Confidence 9999999999999999999999767 899999999999999999999986
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=173.96 Aligned_cols=169 Identities=13% Similarity=0.048 Sum_probs=130.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~v~~ADvVILavP~ 188 (317)
++|+|||+|+||+++|++|++. |+ +|++ ++++.+..+.+.+.|+.+ ....++++ ++++||+||+++|+
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~------G~~~~V~~-~dr~~~~~~~a~~~G~~~--~~~~~~~~~~~~~aDvVilavp~ 104 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRS------GFKGKIYG-YDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 104 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHT------TCCSEEEE-ECSCHHHHHHHHHTTSCS--EEESCTTGGGGGCCSEEEECSCG
T ss_pred CEEEEEeeCHHHHHHHHHHHhC------CCCCEEEE-EECCHHHHHHHHHCCCcc--hhcCCHHHHhhccCCEEEEeCCH
Confidence 8999999999999999999999 98 7755 455555677788888852 12457888 89999999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
+...++++++.+.++++++|+|+++++. ..+.. .+++ +||..||... ++. ..+...+...++|..++++|
T Consensus 105 ~~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~---~l~~--~~v~~hPm~G-~e~-sG~~~A~~~Lf~g~~~il~~ 177 (314)
T 3ggo_A 105 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAG-TEK-SGVEYSLDNLYEGKKVILTP 177 (314)
T ss_dssp GGHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEECCC-CCC-CSGGGCCTTTTTTCEEEECC
T ss_pred HHHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHH---hcCC--CEEecCcccC-Ccc-cchhhhhhhhhcCCEEEEEe
Confidence 9988999999999999999999998853 33333 3333 8999999542 110 00111222334568899999
Q ss_pred ccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
.+..++++++.++.+++.+| .+++.++.++|
T Consensus 178 ~~~~~~~~~~~v~~l~~~~G-~~v~~~~~~~h 208 (314)
T 3ggo_A 178 TKKTDKKRLKLVKRVWEDVG-GVVEYMSPELH 208 (314)
T ss_dssp CTTSCHHHHHHHHHHHHHTT-CEEEECCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CEEEEcCHHHH
Confidence 98899999999999999999 46777888776
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.82 E-value=3.7e-20 Score=172.53 Aligned_cols=148 Identities=17% Similarity=0.152 Sum_probs=122.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||+|+||.+++++|.+. |+ +|++++++.+ ..+...+ .|+.. ..++.++++++|+||+++|
T Consensus 4 ~~I~iIG~G~mG~aia~~l~~~------g~~~~~V~v~dr~~~-~~~~l~~~~gi~~----~~~~~~~~~~aDvVilav~ 72 (280)
T 3tri_A 4 SNITFIGGGNMARNIVVGLIAN------GYDPNRICVTNRSLD-KLDFFKEKCGVHT----TQDNRQGALNADVVVLAVK 72 (280)
T ss_dssp SCEEEESCSHHHHHHHHHHHHT------TCCGGGEEEECSSSH-HHHHHHHTTCCEE----ESCHHHHHSSCSEEEECSC
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCCCCeEEEEeCCHH-HHHHHHHHcCCEE----eCChHHHHhcCCeEEEEeC
Confidence 7899999999999999999999 87 7877766544 3444444 48764 5688999999999999999
Q ss_pred CchHHHHHHHHHhc-CCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 188 DAAQADNYEKIFSC-MKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 188 ~~~~~~vl~ei~~~-lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
++...++++++.++ ++++++|+ +++|+++..++. .++.+.+++++|||+|... | +|+.. +++
T Consensus 73 p~~~~~vl~~l~~~~l~~~~iiiS~~agi~~~~l~~---~l~~~~~vvr~mPn~p~~v-------~-----~g~~~-l~~ 136 (280)
T 3tri_A 73 PHQIKMVCEELKDILSETKILVISLAVGVTTPLIEK---WLGKASRIVRAMPNTPSSV-------R-----AGATG-LFA 136 (280)
T ss_dssp GGGHHHHHHHHHHHHHTTTCEEEECCTTCCHHHHHH---HHTCCSSEEEEECCGGGGG-------T-----CEEEE-EEC
T ss_pred HHHHHHHHHHHHhhccCCCeEEEEecCCCCHHHHHH---HcCCCCeEEEEecCChHHh-------c-----CccEE-EEe
Confidence 99888999999988 88886665 789998877775 5566678999999999775 3 45665 678
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021114 266 HQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~ 286 (317)
..+++++.++.++.+++.+|.
T Consensus 137 ~~~~~~~~~~~v~~l~~~iG~ 157 (280)
T 3tri_A 137 NETVDKDQKNLAESIMRAVGL 157 (280)
T ss_dssp CTTSCHHHHHHHHHHHGGGEE
T ss_pred CCCCCHHHHHHHHHHHHHCCC
Confidence 888999999999999999995
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-19 Score=174.29 Aligned_cols=167 Identities=13% Similarity=0.121 Sum_probs=129.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc----CCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG----SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~----ADvVILavP 187 (317)
++|+|||+|+||+++|++|++. |++|++++ ++.+..+.+.+.|+.. ..++++++++ +|+||+++|
T Consensus 9 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~d-r~~~~~~~a~~~G~~~----~~~~~e~~~~a~~~aDlVilavP 77 (341)
T 3ktd_A 9 RPVCILGLGLIGGSLLRDLHAA------NHSVFGYN-RSRSGAKSAVDEGFDV----SADLEATLQRAAAEDALIVLAVP 77 (341)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEC-SCHHHHHHHHHTTCCE----ESCHHHHHHHHHHTTCEEEECSC
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEEEe-CCHHHHHHHHHcCCee----eCCHHHHHHhcccCCCEEEEeCC
Confidence 7899999999999999999999 99876554 5556677788888853 4678887764 799999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
+....++++++.++ +++++|+|+++++.. .+.. .++ +.+||..||.. +.+ ...+..+....++|.++++|
T Consensus 78 ~~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~---~~~-~~~~v~~HPma-G~e-~sG~~aa~~~Lf~g~~~ilt 150 (341)
T 3ktd_A 78 MTAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKA---RNM-QHRYVGSHPMA-GTA-NSGWSASMDGLFKRAVWVVT 150 (341)
T ss_dssp HHHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHH---TTC-GGGEECEEECC-SCC--CCGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHH---hCC-CCcEecCCccc-ccc-ccchhhhhhHHhcCCeEEEE
Confidence 98878899988886 899999999998643 3332 333 57899999943 322 11222344445567899999
Q ss_pred eccCCCHH--------HHHHHHHHHHHcCCCcEEecCchhh
Q 021114 265 VHQDVDGR--------ATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 265 p~~d~~~e--------a~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
|.++.+++ +++.++.+|+.+|+ +++.++.++|
T Consensus 151 p~~~~~~e~~~~~~~~~~~~v~~l~~~~Ga-~v~~~~~~~H 190 (341)
T 3ktd_A 151 FDQLFDGTDINSTWISIWKDVVQMALAVGA-EVVPSRVGPH 190 (341)
T ss_dssp CGGGTSSCCCCHHHHHHHHHHHHHHHHTTC-EEEECCHHHH
T ss_pred eCCCCChhhhccchHHHHHHHHHHHHHcCC-EEEEeCHHHH
Confidence 99888878 89999999999994 5777888877
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-19 Score=164.60 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=118.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc----eEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~----~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+||+|||+|+||.+++++|.+. |+ +|++++++. +..+.. .+.|+.. ..+++|+++++|+||+++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~------g~~~~~~V~~~~r~~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVilav 71 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK------NIVSSNQIICSDLNT-ANLKNASEKYGLTT----TTDNNEVAKNADILILSI 71 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TSSCGGGEEEECSCH-HHHHHHHHHHCCEE----CSCHHHHHHHCSEEEECS
T ss_pred CeEEEECccHHHHHHHHHHHhC------CCCCCCeEEEEeCCH-HHHHHHHHHhCCEE----eCChHHHHHhCCEEEEEe
Confidence 7899999999999999999999 87 787766553 334433 3457764 568999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
|++...++++++.++++++++|+ +++|++...++. .++.+.++++.|||.|... + +|.. .+++
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vvs~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g~~-~~~~ 135 (247)
T 3gt0_A 72 KPDLYASIINEIKEIIKNDAIIVTIAAGKSIESTEN---AFNKKVKVVRVMPNTPALV-------G-----EGMS-ALCP 135 (247)
T ss_dssp CTTTHHHHC---CCSSCTTCEEEECSCCSCHHHHHH---HHCSCCEEEEEECCGGGGG-------T-----CEEE-EEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEecCCCCHHHHHH---HhCCCCcEEEEeCChHHHH-------c-----CceE-EEEe
Confidence 99998899999999999998876 788998777665 4456678999999998765 3 3454 4778
Q ss_pred ccCCCHHHHHHHHHHHHHcCC
Q 021114 266 HQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~ 286 (317)
....+++..+.++.+++.+|.
T Consensus 136 ~~~~~~~~~~~~~~l~~~~G~ 156 (247)
T 3gt0_A 136 NEMVTEKDLEDVLNIFNSFGQ 156 (247)
T ss_dssp CTTCCHHHHHHHHHHHGGGEE
T ss_pred CCCCCHHHHHHHHHHHHhCCC
Confidence 878889999999999999996
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-17 Score=156.21 Aligned_cols=168 Identities=14% Similarity=0.081 Sum_probs=124.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
|+|+|||+|+||.++|.+|.+. | ++|++++|..+ +..+...+.|+.. ..+..++++++|+||+++
T Consensus 23 mkI~iIG~G~mG~ala~~L~~~------G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~----~~~~~e~~~~aDvVilav 92 (322)
T 2izz_A 23 MSVGFIGAGQLAFALAKGFTAA------GVLAAHKIMASSPDMDLATVSALRKMGVKL----TPHNKETVQHSDVLFLAV 92 (322)
T ss_dssp CCEEEESCSHHHHHHHHHHHHT------TSSCGGGEEEECSCTTSHHHHHHHHHTCEE----ESCHHHHHHHCSEEEECS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCCcceEEEECCCccHHHHHHHHHcCCEE----eCChHHHhccCCEEEEEe
Confidence 7899999999999999999998 8 67877766543 2445555678764 457889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcc-cCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIG-LDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~-~Gv~l~~~~~~~-~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
|++...++++++.+.++++++|+++ .|+....+.+.. ..++ +.++++.||+.|... + +|. .+++
T Consensus 93 ~~~~~~~vl~~l~~~l~~~~ivvs~s~gi~~~~l~~~l~~~~~-~~~vv~~~p~~p~~~-------~-----~g~-~v~~ 158 (322)
T 2izz_A 93 KPHIIPFILDEIGADIEDRHIVVSCAAGVTISSIEKKLSAFRP-APRVIRCMTNTPVVV-------R-----EGA-TVYA 158 (322)
T ss_dssp CGGGHHHHHHHHGGGCCTTCEEEECCTTCCHHHHHHHHHTTSS-CCEEEEEECCGGGGG-------T-----CEE-EEEE
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHhhcCC-CCeEEEEeCCcHHHH-------c-----CCe-EEEE
Confidence 9988889999999999999998875 577665443310 1112 358999999988654 2 344 4466
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
..++.+++..+.++.+++.+|....+ .+|+++..+-+.|
T Consensus 159 ~g~~~~~~~~~~v~~ll~~~G~~~~~--------~e~~~~~~~a~~g 197 (322)
T 2izz_A 159 TGTHAQVEDGRLMEQLLSSVGFCTEV--------EEDLIDAVTGLSG 197 (322)
T ss_dssp ECTTCCHHHHHHHHHHHHTTEEEEEC--------CGGGHHHHHHHTT
T ss_pred eCCCCCHHHHHHHHHHHHhCCCEEEe--------CHHHHHHHHHHhc
Confidence 66677789999999999999953222 2455666555544
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.72 E-value=3.2e-17 Score=151.30 Aligned_cols=167 Identities=12% Similarity=0.071 Sum_probs=125.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|+||.++|++|.+. |.|++|+++ +++.+..+.+.+.|... ....+++++++++|+||+++|++..
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~----g~~~~V~~~-d~~~~~~~~~~~~g~~~--~~~~~~~~~~~~aDvVilavp~~~~ 79 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRD----HPHYKIVGY-NRSDRSRDIALERGIVD--EATADFKVFAALADVIILAVPIKKT 79 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CTTSEEEEE-CSSHHHHHHHHHTTSCS--EEESCTTTTGGGCSEEEECSCHHHH
T ss_pred ceEEEEeeCHHHHHHHHHHHhC----CCCcEEEEE-cCCHHHHHHHHHcCCcc--cccCCHHHhhcCCCEEEEcCCHHHH
Confidence 7999999999999999999887 223566554 44444555666677631 0135778889999999999999999
Q ss_pred HHHHHHHHhc-CCCCcEEEEecCchh---hhhhhcccCCCC-CccEEEeccC------CCChhhHHHHhhcccccCCCce
Q 021114 192 ADNYEKIFSC-MKPNSILGLSHGFLL---GHLQSIGLDFPK-NIGVIAVCPK------GMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 192 ~~vl~ei~~~-lk~gaiVi~~~Gv~l---~~~~~~~~~l~~-~i~vV~vhPn------~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
.++++++.++ ++++++|+++++++. ..+.+ .+++ .++|+..||. +|.....++ ++|.+
T Consensus 80 ~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~---~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l--------~~g~~ 148 (290)
T 3b1f_A 80 IDFIKILADLDLKEDVIITDAGSTKYEIVRAAEY---YLKDKPVQFVGSHPMAGSHKSGAVAANVNL--------FENAY 148 (290)
T ss_dssp HHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHH---HHTTSSCEEEEEEEC-----CCTTSCCTTT--------TTTSE
T ss_pred HHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHH---hccccCCEEEEeCCcCCCCcchHHHhhHHH--------hCCCe
Confidence 8899999999 999999998888754 33333 3343 6789999996 444332222 34578
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++++++...+++..+.++.+++.+|. +++.++.++|
T Consensus 149 ~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~~ 184 (290)
T 3b1f_A 149 YIFSPSCLTKPNTIPALQDLLSGLHA-RYVEIDAAEH 184 (290)
T ss_dssp EEEEECTTCCTTHHHHHHHHTGGGCC-EEEECCHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 88999888888999999999999995 5566666654
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.71 E-value=8.5e-17 Score=147.78 Aligned_cols=170 Identities=13% Similarity=0.057 Sum_probs=122.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLIS 187 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVILavP 187 (317)
|++|+|||+|+||.++|+.|++. |+ +|+++ +++.+..+.+.+.|+.. ....+++++++ ++|+|++++|
T Consensus 1 m~~I~iIG~G~mG~~~a~~l~~~------g~~~~V~~~-d~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~aDvVilavp 71 (281)
T 2g5c_A 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGY-DINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSP 71 (281)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEE-CSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSC
T ss_pred CcEEEEEecCHHHHHHHHHHHhc------CCCcEEEEE-eCCHHHHHHHHHCCCcc--cccCCHHHHhcCCCCEEEEcCC
Confidence 47999999999999999999998 87 77654 44455566677778741 11347888999 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
++...++++++.++++++++|+++++++. ..+.+ .+++ .++..||...... . .........++|.+++++
T Consensus 72 ~~~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~---~l~~--~~v~~~p~~~~~~-~-gp~~a~~~l~~g~~~~~~ 144 (281)
T 2g5c_A 72 VRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLEN---ILGK--RFVGGHPIAGTEK-S-GVEYSLDNLYEGKKVILT 144 (281)
T ss_dssp HHHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHH---HHGG--GEECEEEECCCSC-C-SGGGCCSSTTTTCEEEEC
T ss_pred HHHHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHH---hccc--cceeeccccCCcc-C-ChhhhhhHHhCCCCEEEe
Confidence 99888999999999999999999887753 22332 2333 3777777331100 0 000011122356788899
Q ss_pred eccCCCHHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
|+...+++..+.++++++.+|. +++.++.+.|
T Consensus 145 ~~~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~ 176 (281)
T 2g5c_A 145 PTKKTDKKRLKLVKRVWEDVGG-VVEYMSPELH 176 (281)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTC-EEEECCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCC-EEEEcCHHHH
Confidence 9988889999999999999996 5556665554
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=143.82 Aligned_cols=159 Identities=11% Similarity=0.146 Sum_probs=121.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC----ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||+|+||.++|++|.+. | ++|.+++++.++ .|+.. ..+++++++++|+||+++|
T Consensus 5 m~i~iiG~G~mG~~~a~~l~~~------g~~~~~~v~~~~~~~~~-------~g~~~----~~~~~~~~~~~D~vi~~v~ 67 (262)
T 2rcy_A 5 IKLGFMGLGQMGSALAHGIANA------NIIKKENLFYYGPSKKN-------TTLNY----MSSNEELARHCDIIVCAVK 67 (262)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH------TSSCGGGEEEECSSCCS-------SSSEE----CSCHHHHHHHCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCCCCCeEEEEeCCccc-------CceEE----eCCHHHHHhcCCEEEEEeC
Confidence 7899999999999999999998 8 678777665433 57664 4588899999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
++...++++++.+.++++.+|++++|+....+++ .++.+.++++.+|+.|... + +| .+++++..
T Consensus 68 ~~~~~~v~~~l~~~l~~~~vv~~~~gi~~~~l~~---~~~~~~~~v~~~p~~p~~~-------~-----~g-~~~~~~~~ 131 (262)
T 2rcy_A 68 PDIAGSVLNNIKPYLSSKLLISICGGLNIGKLEE---MVGSENKIVWVMPNTPCLV-------G-----EG-SFIYCSNK 131 (262)
T ss_dssp TTTHHHHHHHSGGGCTTCEEEECCSSCCHHHHHH---HHCTTSEEEEEECCGGGGG-------T-----CE-EEEEEECT
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHH---HhCCCCcEEEECCChHHHH-------c-----CC-eEEEEeCC
Confidence 9888889999988885555667889998766654 3455557788888777554 3 56 56677777
Q ss_pred CCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhhhhhhcC
Q 021114 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGERGECFP 311 (317)
Q Consensus 268 d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e~~il~g 311 (317)
+.+++..+.++.+++.+|. ++..+ +|.++..+.+.+
T Consensus 132 ~~~~~~~~~~~~ll~~~G~--~~~~~------~~~~~~~~a~~~ 167 (262)
T 2rcy_A 132 NVNSTDKKYVNDIFNSCGI--IHEIK------EKDMDIATAISG 167 (262)
T ss_dssp TCCHHHHHHHHHHHHTSEE--EEECC------GGGHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhCCC--EEEeC------HHHccHHHHHHc
Confidence 7788999999999999994 55444 234555555544
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-17 Score=166.21 Aligned_cols=177 Identities=19% Similarity=0.178 Sum_probs=130.5
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +|+|+|... +...+|.| ++|||||+|+||+++|++|+++ |++|+++++.. ..+.+.+.|+.
T Consensus 117 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~g~~ 186 (529)
T 1ygy_A 117 QIPAADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYV--SPARAAQLGIE 186 (529)
T ss_dssp THHHHHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTS--CHHHHHHHTCE
T ss_pred hhHHHHHH-HHhCCCcccCcCccccCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCcE
Confidence 45667777 999999642 33478999 9999999999999999999999 99876655443 34556777887
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchH-HHHHH-HHHhcCCCCcEEEEec-Cchhh--hhhh---cccCCCCCccEEEe
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFLLG--HLQS---IGLDFPKNIGVIAV 235 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~-~~vl~-ei~~~lk~gaiVi~~~-Gv~l~--~~~~---~~~~l~~~i~vV~v 235 (317)
. .+++|++++||+|++|+|++.. ..+++ ++++.||+|++|++++ |-.+. .+.+ .+......++|+..
T Consensus 187 ~-----~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~ 261 (529)
T 1ygy_A 187 L-----LSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFAT 261 (529)
T ss_dssp E-----CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSS
T ss_pred E-----cCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccC
Confidence 3 3899999999999999999954 55776 4889999999999876 32111 1111 11111124678899
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHH-----HHHHHHHcCCCc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV-----ALGWSVALGSPF 288 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~-----a~~l~~alG~~~ 288 (317)
||. +. ..||.. .++++|||.. .+.++.+. +++++..++...
T Consensus 262 eP~-~~---~~L~~~--------~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~ 308 (529)
T 1ygy_A 262 EPC-TD---SPLFEL--------AQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEF 308 (529)
T ss_dssp SSC-SC---CGGGGC--------TTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCC-CC---chHHhC--------CCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCC
Confidence 994 32 245653 6899999998 78888775 788999998754
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=140.27 Aligned_cols=160 Identities=16% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
+++|+|||+ |+||.++|++|.+. |++|++++++ .+..+...+.|+. ..+..++++++|+||+++|++
T Consensus 11 mm~I~iIG~tG~mG~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~-----~~~~~~~~~~aDvVi~av~~~ 78 (286)
T 3c24_A 11 PKTVAILGAGGKMGARITRKIHDS------AHHLAAIEIA-PEGRDRLQGMGIP-----LTDGDGWIDEADVVVLALPDN 78 (286)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHS------SSEEEEECCS-HHHHHHHHHTTCC-----CCCSSGGGGTCSEEEECSCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHhcCCC-----cCCHHHHhcCCCEEEEcCCch
Confidence 379999999 99999999999999 9988765554 4445555556754 236778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEec-CchhhhhhhcccCCCCCccEEEeccCCCChhh----HHHHhhcccccCCC------
Q 021114 190 AQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSV----RRLYVQGKEINGAG------ 258 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~-Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~----r~lf~~G~e~~g~G------ 258 (317)
...++++++.+.++++++|++.+ |..+..+.. . ..+.+|++.||+.+..-. .+.+ +|
T Consensus 79 ~~~~v~~~l~~~l~~~~ivv~~s~~~~~~~l~~---~-~~~~~~v~~~P~~~~~~~~~~~~~~~--------~g~l~~~~ 146 (286)
T 3c24_A 79 IIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMP---E-RADITYFIGHPCHPPLFNDETDPAAR--------TDYHGGIA 146 (286)
T ss_dssp HHHHHHHHHGGGSCTTCEEEESCSHHHHHTCSC---C-CTTSEEEEEEECCSCSSCCCCSHHHH--------TCSSSSSS
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCchhHHHHh---h-hCCCeEEecCCCCccccccccchhhc--------cCcccccc
Confidence 98889999999999999998754 344444332 2 346789999999876510 0111 34
Q ss_pred -ceEEEEeccCCCHHHHHHHHHHHHHcCCC--cEEecCch
Q 021114 259 -INSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTLE 295 (317)
Q Consensus 259 -~~~iitp~~d~~~ea~e~a~~l~~alG~~--~~~~tT~~ 295 (317)
..+++++.. .+++..+.++.+++.+|.+ +++.++.+
T Consensus 147 ~~~~i~~~~~-~~~~~~~~v~~l~~~~G~~~~~~~~v~~~ 185 (286)
T 3c24_A 147 KQAIVCALMQ-GPEEHYAIGADICETMWSPVTRTHRVTTE 185 (286)
T ss_dssp CEEEEEEEEE-SCTHHHHHHHHHHHHHTCSEEEEEECCHH
T ss_pred cceeeeeccC-CCHHHHHHHHHHHHHhcCCcceEEEeChh
Confidence 355444444 5678999999999999973 56666543
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=139.66 Aligned_cols=163 Identities=19% Similarity=0.147 Sum_probs=111.7
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc--------------cHHHHHHCCceecCCCc
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--------------SFAEARAAGFTEENGTL 169 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~--------------s~~~A~~~G~~~~~~~~ 169 (317)
....+.+ ++|||||+|+||.++|++|.+. |++|++++++.++ ..+.+.+.|... .
T Consensus 13 ~~~~~~~-~kIgiIG~G~mG~alA~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 81 (245)
T 3dtt_A 13 ENLYFQG-MKIAVLGTGTVGRTMAGALADL------GHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH----L 81 (245)
T ss_dssp ------C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE----E
T ss_pred cccccCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee----c
Confidence 4578888 9999999999999999999999 9998887765332 111122234332 4
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHH-HhcCCCCcEEEEec-Cc----------------h-hhhhhhcccCCCCCc
Q 021114 170 GDIYETISGSDLVLLLISDAAQADNYEKI-FSCMKPNSILGLSH-GF----------------L-LGHLQSIGLDFPKNI 230 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~~vl~ei-~~~lk~gaiVi~~~-Gv----------------~-l~~~~~~~~~l~~~i 230 (317)
.+++|++++||+||+++|++...+++.++ .+.+ ++++|++++ |+ . ...+++ .+|. .
T Consensus 82 ~~~~e~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~---~l~~-~ 156 (245)
T 3dtt_A 82 AAFADVAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQR---TFPE-A 156 (245)
T ss_dssp EEHHHHHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHH---HSTT-S
T ss_pred cCHHHHHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHH---HCCC-C
Confidence 58899999999999999999999988888 7777 899999776 21 1 234443 4554 6
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
++|+.+|+.+++.....-.. -.|...++.... ++++.+.++.+++.+|+..+
T Consensus 157 ~vv~~~~~~~a~v~~~~~~a-----~~g~~~~~v~g~--d~~~~~~v~~ll~~~g~~~~ 208 (245)
T 3dtt_A 157 KVVKTLNTMNASLMVDPGRA-----AGGDHSVFVSGN--DAAAKAEVATLLKSLGHQDV 208 (245)
T ss_dssp EEEECSTTSCHHHHHCGGGT-----GGGCCCEEEECS--CHHHHHHHHHHHHHTTCCCE
T ss_pred eEEEeecccCHHHhcCcccc-----CCCCeeEEEECC--CHHHHHHHHHHHHHcCCCce
Confidence 89999999988874221000 012222232332 47899999999999998653
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-16 Score=149.01 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=120.6
Q ss_pred ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
++..+++. +|+|+|.. ....++.| ++|||||+|+||+++|+.|+.+ |++|+++++...+ ..+.+.|+..
T Consensus 119 ~~~~~~~~-~~~g~w~~-~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~~ 187 (313)
T 2ekl_A 119 KMYTSMAL-AKSGIFKK-IEGLELAG-KTIGIVGFGRIGTKVGIIANAM------GMKVLAYDILDIR--EKAEKINAKA 187 (313)
T ss_dssp THHHHHHH-HHTTCCCC-CCCCCCTT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCEE
T ss_pred CHHHHHHH-HHcCCCCC-CCCCCCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCcch--hHHHhcCcee
Confidence 45667777 89999962 34579999 9999999999999999999999 9998766655432 2466778763
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl-~ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i~vV~v 235 (317)
.++++++++||+|++++|.+..+ .++ ++.++.||+|++|++++.-.+ ..+++ +......++|+..
T Consensus 188 -----~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~~ 261 (313)
T 2ekl_A 188 -----VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKK-GKVYAYATDVFWN 261 (313)
T ss_dssp -----CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHT-TCEEEEEESCCSS
T ss_pred -----cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHc-CCCcEEEEecCCC
Confidence 48999999999999999998865 466 478889999999998764321 11221 1111224688889
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
||.. ......||.. .|+++|||.. .+.+..+.+
T Consensus 262 eP~~-~~~~~~L~~~--------~nviltPH~~~~t~~~~~~~ 295 (313)
T 2ekl_A 262 EPPK-EEWELELLKH--------ERVIVTTHIGAQTKEAQKRV 295 (313)
T ss_dssp SSCC-SHHHHHHHHS--------TTEEECCSCTTCSHHHHHHH
T ss_pred CCCC-CcccchHhhC--------CCEEECCccCcCcHHHHHHH
Confidence 9954 4433467764 6899999873 345554443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.65 E-value=4e-16 Score=147.77 Aligned_cols=166 Identities=18% Similarity=0.120 Sum_probs=119.7
Q ss_pred ccccchhhhhhcCCCcc-cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLF-KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +|+|+|.. .....+|.| ++|||||+|.||.++|+.|+.+ |++|+++++...+ +.+.+.|+.
T Consensus 117 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 186 (307)
T 1wwk_A 117 KIAFADRK-MREGVWAKKEAMGIELEG-KTIGIIGFGRIGYQVAKIANAL------GMNILLYDPYPNE--ERAKEVNGK 186 (307)
T ss_dssp THHHHHHH-HTTTCCCTTTCCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HHHHHTTCE
T ss_pred CHHHHHHH-HHcCCCCccCcCCcccCC-ceEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHhhcCcc
Confidence 35566767 89999964 234579999 9999999999999999999999 9998766555332 456677876
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i~vV~ 234 (317)
..++++++++||+|++++|.+..+ .+++ +.++.||+|++|++++.-.+ ..+++ +.......+|+.
T Consensus 187 -----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~-g~i~ga~lDv~~ 260 (307)
T 1wwk_A 187 -----FVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKE-GWIAGAGLDVFE 260 (307)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEESCCS
T ss_pred -----ccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEecCC
Confidence 348999999999999999998865 4664 78899999999997764321 22222 222223577888
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
.||..+.+ .||.. .|+++|||.. .+.++.+.+
T Consensus 261 ~eP~~~~~---~L~~~--------~nviltPh~~~~t~~~~~~~ 293 (307)
T 1wwk_A 261 EEPLPKDH---PLTKF--------DNVVLTPHIGASTVEAQERA 293 (307)
T ss_dssp SSSCCTTC---GGGGC--------TTEEECSSCTTCBHHHHHHH
T ss_pred CCCCCCCC---hHHhC--------CCEEECCccccCcHHHHHHH
Confidence 89954333 35553 6899999874 345554444
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-15 Score=140.24 Aligned_cols=147 Identities=15% Similarity=0.129 Sum_probs=112.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
++|+||| +|+||.++|+.|++. |++|++.++... .+.++++++||+||+++|++.
T Consensus 22 ~~I~iIGg~G~mG~~la~~l~~~------G~~V~~~~~~~~------------------~~~~~~~~~aDvVilavp~~~ 77 (298)
T 2pv7_A 22 HKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPINL 77 (298)
T ss_dssp CCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGGG
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCeEEEEECCcc------------------cCHHHHhcCCCEEEEeCCHHH
Confidence 7899999 999999999999999 998876654421 146678899999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
..++++++.++++++++|++++|++...++......+ .+++..||. .+++. . ...|.+++++++. +
T Consensus 78 ~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~--~~~v~~hP~-~g~~~-~--------~~~g~~~~l~~~~--~ 143 (298)
T 2pv7_A 78 TLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-A--------SMAKQVVVRCDGR--F 143 (298)
T ss_dssp HHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-S--------CCTTCEEEEEEEE--C
T ss_pred HHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC--CCEEeeCCC-CCCCc-h--------hhcCCeEEEecCC--C
Confidence 8899999999999999999999986433221111223 579999994 23321 1 1245678888876 5
Q ss_pred HHHHHHHHHHHHHcCCCcEEecCchhh
Q 021114 271 GRATNVALGWSVALGSPFTFATTLEQE 297 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~~~~~tT~~~e 297 (317)
++..+.++++++.+|. +++.++.++|
T Consensus 144 ~~~~~~v~~l~~~~G~-~~~~~~~~~~ 169 (298)
T 2pv7_A 144 PERYEWLLEQIQIWGA-KIYQTNATEH 169 (298)
T ss_dssp GGGTHHHHHHHHHTTC-EEEECCHHHH
T ss_pred HHHHHHHHHHHHHcCC-EEEECCHHHH
Confidence 7889999999999995 5666676665
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=7e-16 Score=148.16 Aligned_cols=164 Identities=16% Similarity=0.088 Sum_probs=118.8
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +|+|+|... ....+|.| ++|||||+|.||+++|+.|+.+ |++|+++++...+ +.+.+.|+.
T Consensus 140 ~~~~~~~~-~~~g~W~~~~~~~~~l~g-~tvgIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~g~~ 209 (335)
T 2g76_A 140 QIPQATAS-MKDGKWERKKFMGTELNG-KTLGILGLGRIGREVATRMQSF------GMKTIGYDPIISP--EVSASFGVQ 209 (335)
T ss_dssp THHHHHHH-HHTTCCCTGGGCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSSCH--HHHHHTTCE
T ss_pred chHHHHHH-HHcCCCCccCCCCcCCCc-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcch--hhhhhcCce
Confidence 45666777 899999643 23578999 9999999999999999999998 9998766554332 356677876
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i~vV~ 234 (317)
..+++|++++||+|++++|.+..+ .+++ +.++.||+|++|++++.-.+ ..+++ +.......+|+.
T Consensus 210 -----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~-g~i~gA~lDV~~ 283 (335)
T 2g76_A 210 -----QLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQS-GQCAGAALDVFT 283 (335)
T ss_dssp -----ECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEEEESCCS
T ss_pred -----eCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHh-CCccEEEEeecC
Confidence 348999999999999999999865 4774 78999999999998764321 22222 212123467888
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
.|| .+. ..||.. .|+++|||. ..+.++.+.
T Consensus 284 ~EP-~~~---~~L~~~--------~nvilTPH~~~~t~e~~~~ 314 (335)
T 2g76_A 284 EEP-PRD---RALVDH--------ENVISCPHLGASTKEAQSR 314 (335)
T ss_dssp SSS-CSC---CHHHHS--------TTEEECSSCTTCBHHHHHH
T ss_pred CCC-CCC---chHHhC--------CCEEECCcCCCCCHHHHHH
Confidence 999 332 346664 689999986 344554443
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.7e-16 Score=139.29 Aligned_cols=145 Identities=15% Similarity=0.211 Sum_probs=108.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
|+|+|||+|+||.++|.+|.+. | ++|.+++++. +..+... +.|+.. ..+.++++ ++|+||+++|+.
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~r~~-~~~~~~~~~~g~~~----~~~~~~~~-~~D~vi~~v~~~ 68 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGA-EKRERLEKELGVET----SATLPELH-SDDVLILAVKPQ 68 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSH-HHHHHHHHHTCCEE----ESSCCCCC-TTSEEEECSCHH
T ss_pred CEEEEECchHHHHHHHHHHHHC------CCCeEEEECCCH-HHHHHHHHhcCCEE----eCCHHHHh-cCCEEEEEeCch
Confidence 5899999999999999999998 9 8887766553 3333333 347764 45677888 999999999977
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...++++++.+ + +++|+++ +|+....+.+ .++.+.++++.+|+.|... + .|... +++..+
T Consensus 69 ~~~~v~~~l~~--~-~~ivv~~~~g~~~~~l~~---~~~~~~~~v~~~~~~~~~~-------~-----~g~~~-i~~~~~ 129 (263)
T 1yqg_A 69 DMEAACKNIRT--N-GALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAE 129 (263)
T ss_dssp HHHHHHTTCCC--T-TCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTT
T ss_pred hHHHHHHHhcc--C-CCEEEEecCCCCHHHHHH---HcCCCCcEEEEcCCHHHHH-------c-----CceEE-EEcCCC
Confidence 66677776654 5 8888877 7887666654 4555678999899877554 2 34554 566666
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 021114 269 VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~ 287 (317)
.+++..+.++.+++.+|..
T Consensus 130 ~~~~~~~~~~~l~~~~g~~ 148 (263)
T 1yqg_A 130 VSETDRRIADRIMKSVGLT 148 (263)
T ss_dssp SCHHHHHHHHHHHHTTEEE
T ss_pred CCHHHHHHHHHHHHhCCCE
Confidence 6789999999999999953
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-15 Score=134.60 Aligned_cols=166 Identities=15% Similarity=0.120 Sum_probs=116.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|+|||+|+||.++|+.|.+. |++|++++ ++.+..+.+.+.|... ....+++++ +++|+||+++|++..
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~~~~~~~~~~~~g~~~--~~~~~~~~~-~~~D~vi~av~~~~~ 70 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIGVS-RQQSTCEKAVERQLVD--EAGQDLSLL-QTAKIIFLCTPIQLI 70 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTSCS--EEESCGGGG-TTCSEEEECSCHHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEE-CCHHHHHHHHhCCCCc--cccCCHHHh-CCCCEEEEECCHHHH
Confidence 5899999999999999999998 99876654 4444555566677641 113577888 999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
.++++++.+.++++++|+++++++...++.....++ +++..||.. +.... .........+.|..+++++....++
T Consensus 71 ~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~---~~~~~~p~~-g~~~~-gp~~a~~~~~~g~~~~~~~~~~~~~ 145 (279)
T 2f1k_A 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWS---GFIGGHPMA-GTAAQ-GIDGAEENLFVNAPYVLTPTEYTDP 145 (279)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHST---TCEEEEECC-CCSCS-SGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred HHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC---CEeecCccc-CCccC-CHHHHhHHHhCCCcEEEecCCCCCH
Confidence 889999999999999999887775433321111222 678888843 11100 0000111123456788888877789
Q ss_pred HHHHHHHHHHHHcCCCcEEecC
Q 021114 272 RATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 272 ea~e~a~~l~~alG~~~~~~tT 293 (317)
+..+.++++++.+|. +++.++
T Consensus 146 ~~~~~v~~l~~~~g~-~~~~~~ 166 (279)
T 2f1k_A 146 EQLACLRSVLEPLGV-KIYLCT 166 (279)
T ss_dssp HHHHHHHHHHGGGTC-EEEECC
T ss_pred HHHHHHHHHHHHcCC-EEEEcC
Confidence 999999999999996 444444
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-16 Score=149.33 Aligned_cols=166 Identities=16% Similarity=0.163 Sum_probs=116.2
Q ss_pred ccccchhhhhhcCCCc-cc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec-CCcccHHHHHH
Q 021114 85 SLANRDEFIVRGGRDL-FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARA 159 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~-f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~ 159 (317)
++..+++. +|+|+|. +. ....++.| ++|||||+|+||+++|+.|+.+ |++|+++++ ...+ ..+.+
T Consensus 118 ~~~~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~--~~~~~ 187 (320)
T 1gdh_A 118 RAGEGEKM-IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASS--SDEAS 187 (320)
T ss_dssp THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCH--HHHHH
T ss_pred cHHHHHHH-HHcCCCCccccccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcCh--hhhhh
Confidence 35566767 8999996 21 23478999 9999999999999999999998 999876665 4332 34556
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCc
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNI 230 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i 230 (317)
.|+.. ..+++|++++||+|++++|.+..+ .+++ +.++.||+|++|++++.-.+ ..+++ +.......
T Consensus 188 ~g~~~----~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~-g~i~gA~l 262 (320)
T 1gdh_A 188 YQATF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGF 262 (320)
T ss_dssp HTCEE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEE
T ss_pred cCcEE----cCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCcEEEE
Confidence 67763 348999999999999999998754 4664 68899999999997754321 12222 11212346
Q ss_pred cEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHHH
Q 021114 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNVA 277 (317)
Q Consensus 231 ~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~a 277 (317)
+|+..+| .+. ..||.. .|+++|||.. .+.++.+.+
T Consensus 263 Dv~~~eP-~~~---~~L~~~--------~nviltPH~~~~t~~~~~~~ 298 (320)
T 1gdh_A 263 DVFAGEP-NIN---EGYYDL--------PNTFLFPHIGSAATQAREDM 298 (320)
T ss_dssp SCCTTTT-SCC---TTGGGC--------TTEEECSSCTTCBHHHHHHH
T ss_pred eCCCCCC-CCC---ChhhhC--------CCEEECCcCCcCcHHHHHHH
Confidence 6777788 222 335653 6899999874 345554444
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=146.42 Aligned_cols=165 Identities=20% Similarity=0.175 Sum_probs=118.3
Q ss_pred ccccchhhhhhcCCCccc-----------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc
Q 021114 85 SLANRDEFIVRGGRDLFK-----------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-----------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s 153 (317)
++..+++. +|+|+|... ....+|.| ++|||||+|.||+++|+.|+.+ |++|+++++. . .
T Consensus 125 ~~~~~~~~-~~~g~W~~~~~~~~~~~~~~~~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~-~-~ 194 (352)
T 3gg9_A 125 RIPQYVAS-LKHGAWQQSGLKSTTMPPNFGIGRVLKG-QTLGIFGYGKIGQLVAGYGRAF------GMNVLVWGRE-N-S 194 (352)
T ss_dssp THHHHHHH-HHTTCTTCCCCCCTTSCTTTTSBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSH-H-H
T ss_pred hHHHHHHH-HHcCCCCcccccccccccccccCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEECCC-C-C
Confidence 35566777 899999642 13579999 9999999999999999999999 9998766554 2 3
Q ss_pred HHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhccc
Q 021114 154 FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGL 224 (317)
Q Consensus 154 ~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~ 224 (317)
.+.+.+.|+.. ..+++|++++||+|++++|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.
T Consensus 195 ~~~~~~~g~~~----~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~ 269 (352)
T 3gg9_A 195 KERARADGFAV----AESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNR-GR 269 (352)
T ss_dssp HHHHHHTTCEE----CSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHH-TS
T ss_pred HHHHHhcCceE----eCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHh-CC
Confidence 35566788863 4589999999999999999988765 664 7899999999999876 321 223332 22
Q ss_pred CCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 225 DFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 225 ~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
......+|+..+|..+.+. |+.. -|+++|||- ..+.++.+
T Consensus 270 i~gA~lDV~~~EPl~~~~p---L~~~--------~nvilTPHia~~t~e~~~ 310 (352)
T 3gg9_A 270 PGMAAIDVFETEPILQGHT---LLRM--------ENCICTPHIGYVERESYE 310 (352)
T ss_dssp SSEEEECCCSSSCCCSCCG---GGGC--------TTEEECCSCTTCBHHHHH
T ss_pred ccEEEecccCCCCCCCCCh---hhcC--------CCEEECCCCCCCCHHHHH
Confidence 2233567777788543333 3332 589999986 33444433
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.8e-15 Score=135.41 Aligned_cols=155 Identities=15% Similarity=0.115 Sum_probs=115.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-----------C--ceec--------CCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----------G--FTEE--------NGTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-----------G--~~~~--------~~~~ 169 (317)
+++|+|||.|.||.++|+.+... |++|++++++ ++..+.+.+. | ...+ -...
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~------G~~V~l~d~~-~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~ 76 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFH------GFAVTAYDIN-TDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYS 76 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCC-HHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEe
Confidence 47999999999999999999999 9998776554 3334444332 1 1000 0014
Q ss_pred CCHHhhcCcCCEEEEccCCch--HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~--~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
.++++++++||+||+++|++. ..++++++.+.++++++|+ .+++..+..+.. .++...++++.||..|...
T Consensus 77 ~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la~---~~~~~~~~ig~h~~~p~~~--- 150 (283)
T 4e12_A 77 DDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVG---YTGRGDKFLALHFANHVWV--- 150 (283)
T ss_dssp SCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHH---HHSCGGGEEEEEECSSTTT---
T ss_pred CCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEccCCCccc---
Confidence 688899999999999999984 4458889999999999988 466666655543 2234468999999887544
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+ ....++++..++++.++.++.+++.+|...+
T Consensus 151 ----~-------~lvevv~~~~t~~~~~~~~~~l~~~~g~~~v 182 (283)
T 4e12_A 151 ----N-------NTAEVMGTTKTDPEVYQQVVEFASAIGMVPI 182 (283)
T ss_dssp ----S-------CEEEEEECTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ----C-------ceEEEEeCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 2 4566888988999999999999999996544
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.60 E-value=4.8e-15 Score=134.52 Aligned_cols=150 Identities=15% Similarity=0.121 Sum_probs=110.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
+++|+|||+|.||.+++++|.+. |++|.+++++ .+..+... +.|+.. ..+++++++++|+|++++|+.
T Consensus 3 ~m~i~iiG~G~mG~~~a~~l~~~------g~~v~~~~~~-~~~~~~~~~~~g~~~----~~~~~~~~~~~D~Vi~~v~~~ 71 (259)
T 2ahr_A 3 AMKIGIIGVGKMASAIIKGLKQT------PHELIISGSS-LERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQ 71 (259)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTS------SCEEEEECSS-HHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGG
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEECCC-HHHHHHHHHHcCCEe----eCCHHHHHhcCCEEEEEeCcH
Confidence 37999999999999999999988 8877666554 33333333 347653 468889999999999999987
Q ss_pred hHHHHHHHHHhcCCCCcEEEEe-cCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 190 AQADNYEKIFSCMKPNSILGLS-HGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~-~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
...+++.+ +++|++|++. .|+....+++ .++.+.++++.||+.|... + +|. ..+++...
T Consensus 72 ~~~~v~~~----l~~~~~vv~~~~~~~~~~l~~---~~~~~~~~v~~~p~~~~~~-------~-----~g~-~~i~~~~~ 131 (259)
T 2ahr_A 72 LFETVLKP----LHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QSS-TALTGNAL 131 (259)
T ss_dssp GHHHHHTT----SCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CEE-EEEEECTT
T ss_pred hHHHHHHH----hccCCEEEEeCCCCCHHHHHH---hcCCCCCEEEEcCCchHHH-------c-----Cce-EEEEcCCC
Confidence 66666654 4578888866 5777666554 3344568899999877654 2 343 44667777
Q ss_pred CCHHHHHHHHHHHHHcCCCcEEecC
Q 021114 269 VDGRATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~~~~~tT 293 (317)
.+++..+.++.+++.+| .++.++
T Consensus 132 ~~~~~~~~~~~ll~~~G--~~~~~~ 154 (259)
T 2ahr_A 132 VSQELQARVRDLTDSFG--STFDIS 154 (259)
T ss_dssp CCHHHHHHHHHHHHTTE--EEEECC
T ss_pred CCHHHHHHHHHHHHhCC--CEEEec
Confidence 78899999999999999 355555
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.6e-15 Score=131.87 Aligned_cols=177 Identities=14% Similarity=0.076 Sum_probs=110.9
Q ss_pred chhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCC
Q 021114 89 RDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENG 167 (317)
Q Consensus 89 ~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~ 167 (317)
++|. +-+|-|.++..+.-..- ++|+|||+|+||.++|+.|.+. |++|++.++++.+.. +.+.+.|...
T Consensus 3 ~~~~-~~~~~~~~~~~~~~m~m-mkI~IIG~G~mG~~la~~l~~~------g~~V~~v~~r~~~~~~~l~~~~g~~~--- 71 (220)
T 4huj_A 3 HHHH-HSSGVDLGTENLYFQSM-TTYAIIGAGAIGSALAERFTAA------QIPAIIANSRGPASLSSVTDRFGASV--- 71 (220)
T ss_dssp ---------------CTTGGGS-CCEEEEECHHHHHHHHHHHHHT------TCCEEEECTTCGGGGHHHHHHHTTTE---
T ss_pred cccc-ccccccccccchhhhcC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCCHHHHHHHHHHhCCCc---
Confidence 3444 55667766532222223 7999999999999999999999 998877344444333 3445556543
Q ss_pred CcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cc--------------hhhhhhhcccCCCCCccE
Q 021114 168 TLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF--------------LLGHLQSIGLDFPKNIGV 232 (317)
Q Consensus 168 ~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv--------------~l~~~~~~~~~l~~~i~v 232 (317)
..+..+.++++|+||+++|++...++++++.+ + ++++|+++. |+ ....+++ .+| +.++
T Consensus 72 -~~~~~~~~~~aDvVilavp~~~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~---~l~-~~~v 144 (220)
T 4huj_A 72 -KAVELKDALQADVVILAVPYDSIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSE---LVP-GAKV 144 (220)
T ss_dssp -EECCHHHHTTSSEEEEESCGGGHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHH---HST-TCEE
T ss_pred -ccChHHHHhcCCEEEEeCChHHHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHH---HCC-CCCE
Confidence 23555678999999999999988889888776 5 577877654 55 3445554 455 5689
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
++.+|+.+.... ..|....+.+... +.... ++++.+.++++++.+|...+.
T Consensus 145 v~~~~~~~~~v~----~~g~~~~~~~~~v-~~~g~--~~~~~~~v~~l~~~~G~~~~~ 195 (220)
T 4huj_A 145 VKAFNTLPAAVL----AADPDKGTGSRVL-FLSGN--HSDANRQVAELISSLGFAPVD 195 (220)
T ss_dssp EEESCSSCHHHH----TSCSBCSSCEEEE-EEEES--CHHHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCCCHHHh----hhCcccCCCCeeE-EEeCC--CHHHHHHHHHHHHHhCCCeEe
Confidence 999999986653 1122222222222 33332 378999999999999966544
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-15 Score=142.68 Aligned_cols=162 Identities=19% Similarity=0.227 Sum_probs=105.5
Q ss_pred ccccchhhhhhcCCCccc--c-cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK--L-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~--~-~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +|+|+|... . ...+|.| |+|||||+|+||.++|+.|+.+ |++|+++++...+ ..+
T Consensus 144 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktiGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~------~~~ 209 (340)
T 4dgs_A 144 RVGDGDRL-VREGRWAAGEQLPLGHSPKG-KRIGVLGLGQIGRALASRAEAF------GMSVRYWNRSTLS------GVD 209 (340)
T ss_dssp THHHHHHH-HHTTCC------CCCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCT------TSC
T ss_pred ChHHHHHH-HhcCCcccccCcCccccccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCccc------ccC
Confidence 45666777 999999653 2 2479999 9999999999999999999999 9998766655332 234
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HH-HHHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl-~ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.+..++ ++ ++.++.||+|++|++++ |-.+ ..++ .+.......+|
T Consensus 210 ~~~----~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~-~g~i~gA~LDV 284 (340)
T 4dgs_A 210 WIA----HQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALK-SGTIAGAGLDV 284 (340)
T ss_dssp CEE----CSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC---------------CCSSEEEESC
T ss_pred cee----cCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHH-cCCceEEEeCC
Confidence 442 4689999999999999999888765 66 48899999999999765 4222 1222 12222235677
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
...+|..+. .|+.. -|+++|||- ..+.++.+.+
T Consensus 285 f~~EP~~~~----~L~~~--------~nvilTPHia~~t~e~~~~~ 318 (340)
T 4dgs_A 285 FVNEPAIRS----EFHTT--------PNTVLMPHQGSATVETRMAM 318 (340)
T ss_dssp CSSSSSCCS----HHHHS--------SSEEECSSCSSCCHHHHHHH
T ss_pred cCCCCCCcc----chhhC--------CCEEEcCcCCcCCHHHHHHH
Confidence 778885432 45554 589999986 4445544443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-15 Score=140.69 Aligned_cols=160 Identities=11% Similarity=0.032 Sum_probs=111.2
Q ss_pred ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
++..+++. +|+|+|....+..++.| ++|||||+|.||+++|+.|+.+ |++|+++++... + .+...
T Consensus 100 ~~~~~~~~-~~~g~w~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~dr~~~---~----~~~~~ 164 (303)
T 1qp8_A 100 RIIQYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPK---E----GPWRF 164 (303)
T ss_dssp THHHHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCC---C----SSSCC
T ss_pred CHHHHHHH-HHcCCCCCCCCCCCCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcc---c----cCccc
Confidence 35566777 89999964434468999 9999999999999999999999 999876655432 1 13331
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCccEE-E
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIGVI-A 234 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i~vV-~ 234 (317)
..++++++++||+|++++|++..+ .+++ +.++.||+|+++++++...+ ..+++ +.......++. .
T Consensus 165 ----~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~-g~i~gA~lDv~~~ 239 (303)
T 1qp8_A 165 ----TNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKE-RPQFIFASDVWWG 239 (303)
T ss_dssp ----BSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCCTT
T ss_pred ----CCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHh-CCceEEEeccCCC
Confidence 458899999999999999999765 4775 78999999999998764322 12222 11111223333 2
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEeccCC---CHHHHH
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATN 275 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~---~~ea~e 275 (317)
.+| .+....||.. .|+++|||... +.+..+
T Consensus 240 ~ep---~~~~~~L~~~--------~nviltPH~~~~~~t~e~~~ 272 (303)
T 1qp8_A 240 RND---FAKDAEFFSL--------PNVVATPWVAGGYGNERVWR 272 (303)
T ss_dssp TTC---CGGGHHHHTS--------TTEEECCSCSSSSSCHHHHH
T ss_pred CCC---CCCCChhhcC--------CCEEECCCcCCCCCCHHHHH
Confidence 344 3334557764 68999999753 566544
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-16 Score=147.20 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=112.3
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+..+++. +++|+|... +..+|.| ++|||||+|+||+++|+.|+.+ |++|+++++...+ . ..+..
T Consensus 100 ~~~~~~~-~~~g~w~~~-~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~-~-----~~~~~- 163 (290)
T 3gvx_A 100 ILENNEL-MKAGIFRQS-PTTLLYG-KALGILGYGGIGRRVAHLAKAF------GMRVIAYTRSSVD-Q-----NVDVI- 163 (290)
T ss_dssp HHHHHHH-HHTTCCCCC-CCCCCTT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSCCC-T-----TCSEE-
T ss_pred hhhhhhH-hhhcccccC-Cceeeec-chheeeccCchhHHHHHHHHhh------CcEEEEEeccccc-c-----ccccc-
Confidence 5556767 899999765 3488999 9999999999999999999999 9998766655332 1 11221
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHH-HH-HHHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEec
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~-vl-~ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vh 236 (317)
..+++|++++||+|++++|.+..++ ++ .+.++.||+|++|++++ |-. ...+++ +.......+|...+
T Consensus 164 ---~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~ga~lDV~~~E 239 (290)
T 3gvx_A 164 ---SESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKE-RSDVWYLSDVWWNE 239 (290)
T ss_dssp ---CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHH-CTTCEEEESCCTTT
T ss_pred ---cCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhh-ccceEEeeccccCC
Confidence 4589999999999999999887765 66 47899999999999876 431 122332 22223356777778
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEecc--CCCHHHHHHH
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ--DVDGRATNVA 277 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~--d~~~ea~e~a 277 (317)
|.- .++. -.|+++|||- ..+.++.+.+
T Consensus 240 P~~------pL~~--------~~nvilTPHiag~~t~e~~~~~ 268 (290)
T 3gvx_A 240 PEI------TETN--------LRNAILSPHVAGGMSGEIMDIA 268 (290)
T ss_dssp TSC------CSCC--------CSSEEECCSCSSCBTTBCCHHH
T ss_pred ccc------chhh--------hhhhhcCccccCCccchHHHHH
Confidence 851 1222 2689999993 3454544443
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-15 Score=146.73 Aligned_cols=167 Identities=14% Similarity=0.112 Sum_probs=119.1
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +++|+|... ....+|.| ++|||||+|.||.++|+.|+.+ |++|+++++. ....+.+.+.|
T Consensus 137 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIG~G~IG~~vA~~l~~~------G~~V~~~dr~-~~~~~~~~~~g 207 (351)
T 3jtm_A 137 NFVPGYNQ-VVKGEWNVAGIAYRAYDLEG-KTIGTVGAGRIGKLLLQRLKPF------GCNLLYHDRL-QMAPELEKETG 207 (351)
T ss_dssp THHHHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCEEEEECSS-CCCHHHHHHHC
T ss_pred CcHHHHHH-HHcCCCccccccCCcccccC-CEEeEEEeCHHHHHHHHHHHHC------CCEEEEeCCC-ccCHHHHHhCC
Confidence 35566666 899999753 23578999 9999999999999999999999 9997665554 33455666677
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. ...+++ +.......+|
T Consensus 208 ~~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV 282 (351)
T 3jtm_A 208 AKF----VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVES-GHIGGYSGDV 282 (351)
T ss_dssp CEE----CSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESC
T ss_pred CeE----cCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHh-CCccEEEeCC
Confidence 763 4589999999999999999887664 664 7899999999999876 321 122332 2222234667
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
...+|..+.+. ++.. -|+++|||- ..+.++.+.
T Consensus 283 ~~~EP~~~~~p---L~~~--------~nvilTPHia~~t~ea~~~ 316 (351)
T 3jtm_A 283 WDPQPAPKDHP---WRYM--------PNQAMTPHTSGTTIDAQLR 316 (351)
T ss_dssp CSSSSCCTTCG---GGTS--------TTBCCCCSCGGGSHHHHHH
T ss_pred CCCCCCCCCCh---hhcC--------CCEEECCcCCCCCHHHHHH
Confidence 77788554333 3322 578899994 445555544
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=144.36 Aligned_cols=165 Identities=19% Similarity=0.204 Sum_probs=115.3
Q ss_pred ccccchhhhhhcCCCccc----ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC
Q 021114 85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (317)
++..+++. +|+|+|... ....+|.| ++|||||+|.||+++|+.|+.+ |++|+++++... ..+.+ .
T Consensus 145 ~~~~~~~~-~r~g~W~~~~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~-~~~~~--~ 213 (345)
T 4g2n_A 145 RGYEADRM-VRSGSWPGWGPTQLLGMGLTG-RRLGIFGMGRIGRAIATRARGF------GLAIHYHNRTRL-SHALE--E 213 (345)
T ss_dssp THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEESCSHHHHHHHHHHHTT------TCEEEEECSSCC-CHHHH--T
T ss_pred CHHHHHHH-HHcCCCcccCcccccccccCC-CEEEEEEeChhHHHHHHHHHHC------CCEEEEECCCCc-chhhh--c
Confidence 45566767 899999631 23589999 9999999999999999999999 999876665432 22222 2
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021114 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG 231 (317)
Q Consensus 161 G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~ 231 (317)
|+.. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+
T Consensus 214 g~~~----~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~LD 288 (345)
T 4g2n_A 214 GAIY----HDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRS-KHLFAAGLD 288 (345)
T ss_dssp TCEE----CSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEES
T ss_pred CCeE----eCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCceEEEec
Confidence 6653 3589999999999999999987765 664 7899999999999876 421 223332 223234567
Q ss_pred EEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
|...+| .+.+. |+.. -|+++|||- ..+.++.+.+
T Consensus 289 Vf~~EP-~~~~p---L~~~--------~nvilTPHia~~t~e~~~~~ 323 (345)
T 4g2n_A 289 VFANEP-AIDPR---YRSL--------DNIFLTPHIGSATHETRDAM 323 (345)
T ss_dssp CCTTTT-SCCTT---GGGC--------TTEEECCSCTTCBHHHHHHH
T ss_pred CCCCCC-CCCch---HHhC--------CCEEEcCccCcCCHHHHHHH
Confidence 777788 33222 3432 589999986 3444444433
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.57 E-value=8e-15 Score=142.50 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=117.0
Q ss_pred ccccchhhhhhcCCCccc----ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC
Q 021114 85 SLANRDEFIVRGGRDLFK----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (317)
++..+++. +|+|+|.+. ....+|.| ++|||||+|.||+++|+.++.+ |++|+++++. . ..+.+.+.
T Consensus 148 ~~~~~~~~-~r~g~~~w~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~~f------G~~V~~~d~~-~-~~~~~~~~ 217 (365)
T 4hy3_A 148 GIVDADIA-FQEGTELWGGEGNASARLIAG-SEIGIVGFGDLGKALRRVLSGF------RARIRVFDPW-L-PRSMLEEN 217 (365)
T ss_dssp TTTHHHHH-HHHTCCCCSSSSTTSCCCSSS-SEEEEECCSHHHHHHHHHHTTS------CCEEEEECSS-S-CHHHHHHT
T ss_pred chhHHHHH-HHcCCccccccccccccccCC-CEEEEecCCcccHHHHHhhhhC------CCEEEEECCC-C-CHHHHhhc
Confidence 46666767 899995432 24689999 9999999999999999999998 9998766554 2 34556677
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021114 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG 231 (317)
Q Consensus 161 G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~ 231 (317)
|+. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. ...+++ +... ...+
T Consensus 218 g~~-----~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~-aaLD 290 (365)
T 4hy3_A 218 GVE-----PASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSS-GHIV-AASD 290 (365)
T ss_dssp TCE-----ECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHT-TSSE-EEES
T ss_pred Cee-----eCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHc-CCce-EEee
Confidence 876 3589999999999999999988765 664 8899999999999776 421 233333 2222 4567
Q ss_pred EEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
|...+|..+.+. |+.. -|+++|||- ..+.++.+.
T Consensus 291 V~~~EPl~~~~p---L~~~--------~nvilTPHia~~t~e~~~~ 325 (365)
T 4hy3_A 291 VYPEEPLPLDHP---VRSL--------KGFIRSAHRAGALDSAFKK 325 (365)
T ss_dssp CCSSSSCCTTCG---GGTC--------TTEEECCSCSSCCHHHHHH
T ss_pred CCCCCCCCCCCh---hhcC--------CCEEECCccccCHHHHHHH
Confidence 777778544333 3332 589999986 344555443
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=147.33 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=116.3
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +|+|+|+.. ....+|.| ++|||||+|.||+++|+.|+.+ |++|+++++.. ...+.+.+.|
T Consensus 164 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-~~~~~~~~~G 234 (393)
T 2nac_A 164 NYLPSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELN 234 (393)
T ss_dssp THHHHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHT
T ss_pred ccHHHHHH-HHcCCCCccccccCCccCCC-CEEEEEeECHHHHHHHHHHHhC------CCEEEEEcCCc-cchhhHhhcC
Confidence 34556666 899999642 13468999 9999999999999999999999 99987655543 3345566678
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~v 232 (317)
+.. ..+++|++++||+|++++|.+..+ .+++ +.++.||+|++|++++ |-.+ ..+++ +.......+|
T Consensus 235 ~~~----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~gA~lDV 309 (393)
T 2nac_A 235 LTW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDV 309 (393)
T ss_dssp CEE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESC
T ss_pred cee----cCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc-CCeeEEEEEe
Confidence 763 358999999999999999998765 4774 7889999999999765 3211 12222 2122234677
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
+..+|..+.+. |+.. .|+++|||. ..+.++.+
T Consensus 310 ~~~EP~~~~~p---L~~~--------~nvilTPHia~~T~e~~~ 342 (393)
T 2nac_A 310 WFPQPAPKDHP---WRTM--------PYNGMTPHISGTTLTAQA 342 (393)
T ss_dssp CSSSSCCTTCG---GGTS--------TTBCCCCSCTTCSHHHHH
T ss_pred cCCCCCCCCCh---hHcC--------CCEEECCCCCcCcHHHHH
Confidence 77888544333 3432 578899986 33444443
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.2e-15 Score=142.35 Aligned_cols=167 Identities=20% Similarity=0.276 Sum_probs=117.2
Q ss_pred ccccchhhhhhcCCCc-cc--ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVRGGRDL-FK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~-f~--~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +|+|+|. +. ....+|.| ++|||||+|+||+++|+.|+.+ |++|+++++.. ...+.+.+.|
T Consensus 118 ~~~~~~~~-~~~g~w~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~-~~~~~~~~~g 188 (330)
T 4e5n_A 118 HLRAADAF-VRSGKFRGWQPRFYGTGLDN-ATVGFLGMGAIGLAMADRLQGW------GATLQYHEAKA-LDTQTEQRLG 188 (330)
T ss_dssp THHHHHHH-HHTTCCCSCCSCCCCCCSTT-CEEEEECCSHHHHHHHHHTTTS------CCEEEEECSSC-CCHHHHHHHT
T ss_pred ChHHHHHH-HHhCCccccCccccCCccCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCCC-CcHhHHHhcC
Confidence 35556767 8999996 32 23478999 9999999999999999999998 99986655543 2345556667
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~v 232 (317)
+. ..+++|++++||+|++++|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.......+|
T Consensus 189 ~~-----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~-g~i~gA~lDV 262 (330)
T 4e5n_A 189 LR-----QVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALER-GQLGGYAADV 262 (330)
T ss_dssp EE-----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESC
T ss_pred ce-----eCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHh-CCccEEEecc
Confidence 75 3489999999999999999887664 665 8999999999999876 321 122332 2222234566
Q ss_pred EEec-------cCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 233 IAVC-------PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 233 V~vh-------Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
...+ |..+.+ .|+.. -|+++|||- ..+.++.+.+
T Consensus 263 ~~~E~~~~~~~Pl~~~~---~L~~~--------~nvilTPHia~~t~e~~~~~ 304 (330)
T 4e5n_A 263 FEMEDWARADRPQQIDP---ALLAH--------PNTLFTPHIGSAVRAVRLEI 304 (330)
T ss_dssp CGGGCTTCTTCCSSCCH---HHHTC--------SSEEECSSCTTCCHHHHHHH
T ss_pred cccccccccCCCCCCCc---hHHcC--------CCEEECCcCCCChHHHHHHH
Confidence 6667 643332 34543 589999986 3445544443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6e-15 Score=140.00 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=111.7
Q ss_pred ccccchhhhhhcCCCcc-c---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC
Q 021114 85 SLANRDEFIVRGGRDLF-K---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (317)
++..+++. +|+|+|.. . ....++.| ++|||||+|+||.++|+.|+.+ |++|+++++...+. .
T Consensus 116 ~~~~~~~~-~~~g~w~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~-~----- 181 (311)
T 2cuk_A 116 RVVEGAAY-ARDGLWKAWHPELLLGLDLQG-LTLGLVGMGRIGQAVAKRALAF------GMRVVYHARTPKPL-P----- 181 (311)
T ss_dssp THHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS-S-----
T ss_pred ChHHHHHH-HHcCCCCccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHC------CCEEEEECCCCccc-c-----
Confidence 45566767 89999952 1 23468999 9999999999999999999999 99987666553321 1
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh-h--hhhh--cccCCCCCccEE
Q 021114 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL-G--HLQS--IGLDFPKNIGVI 233 (317)
Q Consensus 161 G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l-~--~~~~--~~~~l~~~i~vV 233 (317)
+. ..+++|++++||+|++++|++..+ .+++ +.++.||+|+++++++.-.+ . .+.+ .+.......+|+
T Consensus 182 -~~-----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~g~i~ga~lDv~ 255 (311)
T 2cuk_A 182 -YP-----FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALRGHLFGAGLDVT 255 (311)
T ss_dssp -SC-----BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHTTTSSEEEESSC
T ss_pred -cc-----cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHhCcCCEEEEeeC
Confidence 11 358999999999999999998754 4775 78889999999997764322 1 1111 011112346777
Q ss_pred EeccCCCChhhHHHHhhcccccCCCceEEEEeccCC-CHHHHHH
Q 021114 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV-DGRATNV 276 (317)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~-~~ea~e~ 276 (317)
..+|..+.+ .||.. .|+++|||... +.++.+.
T Consensus 256 ~~eP~~~~~---~L~~~--------~nviltPh~~~~t~~~~~~ 288 (311)
T 2cuk_A 256 DPEPLPPGH---PLYAL--------PNAVITPHIGSAGRTTRER 288 (311)
T ss_dssp SSSSCCTTS---GGGGC--------TTEEECCSCTTCBHHHHHH
T ss_pred CCCCCCCCC---hhhhC--------CCEEECCcCCCCCHHHHHH
Confidence 788854332 35543 68999998743 3444333
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-13 Score=129.20 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=113.3
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceecC-------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN------------- 166 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~~------------- 166 (317)
+++|+|||+|.||.++|..|.+. |++|+++++. ++..+.+ .+.|...+.
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~~------G~~V~~~d~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~ 87 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQT-EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 87 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhc
Confidence 47899999999999999999999 9998766654 3333322 123421100
Q ss_pred -CCcCCHHhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 167 -~~~~~~~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
....+++|++++||+||+++|.+.. ..+++++.+.++++++|+ .++|+.+..+.. .++..-++++.||+.|..
T Consensus 88 i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~~---~~~~~~~~~g~h~~~P~~ 164 (302)
T 1f0y_A 88 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 164 (302)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred eEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCCcccEEEEecCCCcc
Confidence 0135788899999999999998764 357888989999999887 567777666654 333345799999988754
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
. + ....+++..+.+++..+.+..+++.+|...+
T Consensus 165 ~-------~-------~~~~i~~g~~~~~e~~~~~~~l~~~~G~~~v 197 (302)
T 1f0y_A 165 V-------M-------KLVEVIKTPMTSQKTFESLVDFSKALGKHPV 197 (302)
T ss_dssp T-------C-------CEEEEECCTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred c-------C-------ceEEEeCCCCCCHHHHHHHHHHHHHcCCceE
Confidence 3 2 3445677878889999999999999995443
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-15 Score=144.77 Aligned_cols=155 Identities=11% Similarity=0.081 Sum_probs=110.1
Q ss_pred cccc-hhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANR-DEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~-~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+ ++. +++|+|....+..+|.| ++|||||+|.||+++|+.|+.+ |++|+++++..... +.+ ...+.
T Consensus 113 ~~~~~~~~-~~~~~W~~~~~~~~l~g-ktvGIiGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~-~~~~~- 181 (324)
T 3evt_A 113 YHAAWLNQ-RGARQWALPMTTSTLTG-QQLLIYGTGQIGQSLAAKASAL------GMHVIGVNTTGHPA-DHF-HETVA- 181 (324)
T ss_dssp HHHHHHHH-TTTCCSSCSSCCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSCCCC-TTC-SEEEE-
T ss_pred hhHHHHHH-HhcCCcccCCCCccccC-CeEEEECcCHHHHHHHHHHHhC------CCEEEEECCCcchh-HhH-hhccc-
Confidence 3444 656 89999976545689999 9999999999999999999999 99987766653321 111 11111
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. ...+++ +.......+|...
T Consensus 182 ----~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~ 256 (324)
T 3evt_A 182 ----FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDH-HQLSMAALDVTEP 256 (324)
T ss_dssp ----GGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHT-TSCSEEEESSCSS
T ss_pred ----cCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHh-CCceEEEeCCCCC
Confidence 3578999999999999999987765 664 7899999999999876 321 223332 2222335677778
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|..+.+. |+.. -|+++|||-
T Consensus 257 EPl~~~~p---L~~~--------~nvilTPHi 277 (324)
T 3evt_A 257 EPLPTDHP---LWQR--------DDVLITPHI 277 (324)
T ss_dssp SSCCTTCG---GGGC--------SSEEECCSC
T ss_pred CCCCCCCh---hhcC--------CCEEEcCcc
Confidence 88554333 3432 589999986
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=135.00 Aligned_cols=150 Identities=13% Similarity=0.054 Sum_probs=106.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.++|++|.+. |+ +|++++++. ++..+.+.+.|+.. ..+++|++++||+||+++|+.
T Consensus 25 ~~I~iIG~G~mG~~~A~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp~~ 94 (312)
T 3qsg_A 25 MKLGFIGFGEAASAIASGLRQA------GAIDMAAYDAASAESWRPRAEELGVSC----KASVAEVAGECDVIFSLVTAQ 94 (312)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCEEEEECSSCHHHHHHHHHHTTCEE----CSCHHHHHHHCSEEEECSCTT
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCeEEEEcCCCCHHHHHHHHHCCCEE----eCCHHHHHhcCCEEEEecCch
Confidence 8999999999999999999999 99 887776652 45566777788874 568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCC-C--CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFP-K--NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~-~--~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
...++++++.+.++++++|++++++...........+. . ++.|+.. |-..+...+ .| ...+++..
T Consensus 95 ~~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~-pv~g~~~~~----~g-------~l~i~vgg 162 (312)
T 3qsg_A 95 AALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAV-AVMSAVKPH----GH-------RVPLVVDG 162 (312)
T ss_dssp THHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEE-EECSCSTTT----GG-------GSEEEEES
T ss_pred hHHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEec-cccCCchhh----cC-------CEEEEecC
Confidence 99999999999999999999988764321110000111 1 4666642 311111100 12 33445554
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021114 267 QDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~ 288 (317)
.+ + +.++.+++.+|...
T Consensus 163 ~~---~--~~~~~ll~~~g~~~ 179 (312)
T 3qsg_A 163 DG---A--RRFQAAFTLYGCRI 179 (312)
T ss_dssp TT---H--HHHHHHHHTTTCEE
T ss_pred Ch---H--HHHHHHHHHhCCCe
Confidence 43 1 78899999999643
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=7.7e-15 Score=144.22 Aligned_cols=164 Identities=19% Similarity=0.150 Sum_probs=106.3
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-c
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-F 162 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~ 162 (317)
++..+++. +++|+|... ....+|.| |+|||||+|+||..+|+.++.+ |++|+++++..... .| +
T Consensus 120 ~i~~~~~~-~~~g~W~~~~~~~~el~g-ktlGiIGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~~------~~~~ 185 (404)
T 1sc6_A 120 GVPEANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLP------LGNA 185 (404)
T ss_dssp THHHHHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC------CTTC
T ss_pred ChHHHHHH-HHcCCccccCCCccccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEEcCCchhc------cCCc
Confidence 45566777 899999653 24579999 9999999999999999999999 99987666543221 23 3
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV 233 (317)
.. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +......++|+
T Consensus 186 ~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~-g~i~gA~lDVf 260 (404)
T 1sc6_A 186 TQ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVF 260 (404)
T ss_dssp EE----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC-
T ss_pred ee----cCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHc-CCccEEEEeec
Confidence 32 4589999999999999999997664 664 7889999999999775 321 122222 22222346788
Q ss_pred EeccCCCChh-hHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 234 AVCPKGMGPS-VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 234 ~vhPn~pg~~-~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
..+|..+... ...|+.. -|+++|||- ..+.++.+
T Consensus 261 ~~EP~~~~~~~~~pL~~~--------~nvilTPHi~~~T~ea~~ 296 (404)
T 1sc6_A 261 PTEPATNSDPFTSPLAEF--------DNVLLTPHIGGSTQEAQE 296 (404)
T ss_dssp --------CTTTGGGTTC--------TTEEEECCCSCCSHHHHH
T ss_pred CCCCCCccccccchhhcC--------CCEEECCCCCCCcHHHHH
Confidence 8898543211 1123332 689999987 34455443
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-14 Score=140.88 Aligned_cols=170 Identities=16% Similarity=0.064 Sum_probs=117.5
Q ss_pred ccccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHC
Q 021114 85 SLANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~ 160 (317)
++..+++. +|+|+|.+. ....+|.| ++|||||+|+||.++|+.|+.+ |++ |+++++. ....+.+.+.
T Consensus 137 ~~~~~~~~-~~~g~W~~~~~~~~~~~l~g-~tvgIIG~G~IG~~vA~~l~~~------G~~~V~~~d~~-~~~~~~~~~~ 207 (364)
T 2j6i_A 137 NFVPAHEQ-IINHDWEVAAIAKDAYDIEG-KTIATIGAGRIGYRVLERLVPF------NPKELLYYDYQ-ALPKDAEEKV 207 (364)
T ss_dssp THHHHHHH-HHTTCCCHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHGGG------CCSEEEEECSS-CCCHHHHHHT
T ss_pred ChHHHHHH-HHhCCCCcCcccCCcccCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEECCC-ccchhHHHhc
Confidence 35566766 899999642 23579999 9999999999999999999999 997 8666544 3334556677
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCcc
Q 021114 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIG 231 (317)
Q Consensus 161 G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~ 231 (317)
|+.. ..++++++++||+|++++|++..++ +++ +.++.||+|++|++++ |-. +..+++ +.......+
T Consensus 208 g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~-g~i~gA~LD 282 (364)
T 2j6i_A 208 GARR----VENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALES-GQLRGYGGD 282 (364)
T ss_dssp TEEE----CSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEES
T ss_pred CcEe----cCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHc-CCCcEEEEe
Confidence 8763 4589999999999999999987654 664 7889999999999765 321 122332 222233567
Q ss_pred EEEeccCCCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHH
Q 021114 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRAT 274 (317)
Q Consensus 232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~ 274 (317)
|...+|..+.+... ..... .+.|+++|||- ..+.++.
T Consensus 283 Vf~~EP~~~~~pL~---~~~~~---~~~nvilTPHia~~t~e~~ 320 (364)
T 2j6i_A 283 VWFPQPAPKDHPWR---DMRNK---YGAGNAMTPHYSGTTLDAQ 320 (364)
T ss_dssp CCSSSSCCTTCHHH---HCCCT---TSCCEEECCSCGGGSHHHH
T ss_pred cCCCCCCCCCChHH---hccCC---ccCcEEECCccCcCCHHHH
Confidence 77788865544432 21000 01179999986 3344444
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.4e-15 Score=145.46 Aligned_cols=166 Identities=17% Similarity=0.131 Sum_probs=111.3
Q ss_pred ccccchhhhhhcCCCcccc-cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~-~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +++|+|.... ...++.| ++|||||+|.||.++|+.++.+ |++|+++++..... ..+..
T Consensus 131 ~i~~~~~~-~~~g~W~~~~~~~~el~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~yd~~~~~~-----~~~~~ 197 (416)
T 3k5p_A 131 RIFPRSVS-AHAGGWEKTAIGSREVRG-KTLGIVGYGNIGSQVGNLAESL------GMTVRYYDTSDKLQ-----YGNVK 197 (416)
T ss_dssp THHHHHHH-HHTTCCCCCCTTCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCCCC-----BTTBE
T ss_pred ccHHHHHh-hhcccccccCCCCccCCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECCcchhc-----ccCcE
Confidence 45566767 8999996542 4579999 9999999999999999999999 99987665542211 11233
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..+++|++++||+|++|+|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.......+|+.
T Consensus 198 ~----~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~-g~i~gAalDVf~ 272 (416)
T 3k5p_A 198 P----AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQE-GHLAGAAIDVFP 272 (416)
T ss_dssp E----CSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEECCCS
T ss_pred e----cCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCccEEEeCCCC
Confidence 2 4689999999999999999988776 664 7899999999999765 431 122332 222233566777
Q ss_pred eccCCCChhh-HHHHhhcccccCCCceEEEEec-cCCCHHHHHH
Q 021114 235 VCPKGMGPSV-RRLYVQGKEINGAGINSSFAVH-QDVDGRATNV 276 (317)
Q Consensus 235 vhPn~pg~~~-r~lf~~G~e~~g~G~~~iitp~-~d~~~ea~e~ 276 (317)
.+|..+.... ..|+. --|+++||| ...+.++.+.
T Consensus 273 ~EP~~~~~~~~~pL~~--------~~nvilTPHig~~T~ea~~~ 308 (416)
T 3k5p_A 273 VEPASNGERFSTPLQG--------LENVILTPHIGGSTEEAQER 308 (416)
T ss_dssp SCCSSTTSCCCCTTTT--------CTTEEECCSCTTCCHHHHHH
T ss_pred CCCCCcccccchhHhc--------CCCEEECCCCCCCCHHHHHH
Confidence 7776543111 11222 157999999 4556665544
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-14 Score=131.20 Aligned_cols=130 Identities=14% Similarity=0.051 Sum_probs=100.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|+||.++|++|++. |++|+.+++. ++ +++|| ||++|++.+
T Consensus 7 mkI~IIG~G~~G~sLA~~L~~~------G~~V~~~~~~-----------------------~~-~~~aD--ilavP~~ai 54 (232)
T 3dfu_A 7 LRVGIFDDGSSTVNMAEKLDSV------GHYVTVLHAP-----------------------ED-IRDFE--LVVIDAHGV 54 (232)
T ss_dssp CEEEEECCSCCCSCHHHHHHHT------TCEEEECSSG-----------------------GG-GGGCS--EEEECSSCH
T ss_pred cEEEEEeeCHHHHHHHHHHHHC------CCEEEEecCH-----------------------HH-hccCC--EEEEcHHHH
Confidence 7999999999999999999999 9987644431 12 56799 999999998
Q ss_pred HHHHHHHHhcCCCCcEEEEecC-chhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 192 ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~~G-v~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
.++++++.+++++|++|++++| ++...++. ..+.+..||+.||.. | ..+.++.. +
T Consensus 55 ~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~---~~~~g~~fvg~HPm~-----------g-------~~~~i~a~---d 110 (232)
T 3dfu_A 55 EGYVEKLSAFARRGQMFLHTSLTHGITVMDP---LETSGGIVMSAHPIG-----------Q-------DRWVASAL---D 110 (232)
T ss_dssp HHHHHHHHTTCCTTCEEEECCSSCCGGGGHH---HHHTTCEEEEEEEEE-----------T-------TEEEEEES---S
T ss_pred HHHHHHHHHhcCCCCEEEEECCcCHHHHHHH---HHhCCCcEEEeeeCC-----------C-------CceeeeCC---C
Confidence 9999999999999999999765 44433332 113467899999942 2 34555554 5
Q ss_pred HHHHHHHHHHHHHcCCCcEEecCchhhh
Q 021114 271 GRATNVALGWSVALGSPFTFATTLEQEY 298 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~~~~~tT~~~e~ 298 (317)
+++++.++.|++.+|. +++.++.++|-
T Consensus 111 ~~a~~~l~~L~~~lG~-~vv~~~~~~hd 137 (232)
T 3dfu_A 111 ELGETIVGLLVGELGG-SIVEIADDKRA 137 (232)
T ss_dssp HHHHHHHHHHHHHTTC-EECCCCGGGHH
T ss_pred HHHHHHHHHHHHHhCC-EEEEeCHHHHh
Confidence 7899999999999994 66677777663
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2e-15 Score=143.84 Aligned_cols=155 Identities=13% Similarity=0.103 Sum_probs=111.4
Q ss_pred ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
++..|++. +++|+|... +..++.| ++|||||+|.||+++|+.|+.+ |++|+++++..... .++..
T Consensus 116 ~~~~~~~~-~~~g~W~~~-~~~~l~g-~tvGIiG~G~IG~~vA~~l~~~------G~~V~~~dr~~~~~------~~~~~ 180 (315)
T 3pp8_A 116 RFDDYQAL-KNQALWKPL-PEYTREE-FSVGIMGAGVLGAKVAESLQAW------GFPLRCWSRSRKSW------PGVES 180 (315)
T ss_dssp THHHHHHH-HHTTCCCCC-CCCCSTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEEESSCCCC------TTCEE
T ss_pred CChHHHHH-HHhcccCCC-CCCCcCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCchhh------hhhhh
Confidence 35567777 899999765 5689999 9999999999999999999999 99987766653321 23321
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HH-HHHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NY-EKIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl-~ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
. ....+++|++++||+|++++|.+..++ ++ .+.++.||+|++|++++ |-. +..+++ +.......+|...
T Consensus 181 ~-~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~-g~i~gA~lDV~~~ 258 (315)
T 3pp8_A 181 Y-VGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDS-GKLKGAMLDVFSQ 258 (315)
T ss_dssp E-ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCSS
T ss_pred h-cccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHh-CCccEEEcCCCCC
Confidence 0 012478999999999999999987765 67 48899999999999776 421 223332 2222335677778
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|..+.+. |+.. -|+++|||-
T Consensus 259 EPl~~~~p---L~~~--------~nvilTPHi 279 (315)
T 3pp8_A 259 EPLPQESP---LWRH--------PRVAMTPHI 279 (315)
T ss_dssp SSCCTTCG---GGGC--------TTEEECSSC
T ss_pred CCCCCCCh---hhcC--------CCEEECCCC
Confidence 88554433 3332 578999986
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-15 Score=144.22 Aligned_cols=155 Identities=19% Similarity=0.158 Sum_probs=111.1
Q ss_pred ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
++..+++. +|+|+|... ...+|.| ++|||||+|+||+++|+.|+.+ |++|+++++..... +.. .+..
T Consensus 117 ~~~~~~~~-~~~g~W~~~-~~~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~dr~~~~~-~~~--~~~~- 183 (324)
T 3hg7_A 117 QLPLYREQ-QKQRLWQSH-PYQGLKG-RTLLILGTGSIGQHIAHTGKHF------GMKVLGVSRSGRER-AGF--DQVY- 183 (324)
T ss_dssp THHHHHHH-HHTTCCCCC-CCCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCC-TTC--SEEE-
T ss_pred ChHHHHHH-HhhCCCcCC-CCccccc-ceEEEEEECHHHHHHHHHHHhC------CCEEEEEcCChHHh-hhh--hccc-
Confidence 46667777 899999754 4579999 9999999999999999999999 99987666553221 110 1111
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~v 235 (317)
...+++|++++||+|++++|.+..++ ++. +.++.||+|++|++++ |-. +..+++ +.......+|...
T Consensus 184 ---~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~-g~i~ga~lDV~~~ 259 (324)
T 3hg7_A 184 ---QLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRT-GKLGMAVLDVFEQ 259 (324)
T ss_dssp ---CGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHT-TSSSEEEESCCSS
T ss_pred ---ccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHc-CCceEEEeccCCC
Confidence 14589999999999999999887765 665 7889999999999876 321 123332 2232345778888
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|..+.+. |+.. -|+++|||-
T Consensus 260 EPl~~~~p---L~~~--------~nvilTPHi 280 (324)
T 3hg7_A 260 EPLPADSP---LWGQ--------PNLIITPHN 280 (324)
T ss_dssp SSCCTTCT---TTTC--------TTEEECCSC
T ss_pred CCCCCCCh---hhcC--------CCEEEeCCC
Confidence 88554433 3322 589999986
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=135.25 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=116.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-------cHHHHHHCCceecC---------CCcCCHHh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-------SFAEARAAGFTEEN---------GTLGDIYE 174 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-------s~~~A~~~G~~~~~---------~~~~~~~e 174 (317)
|++|+|||+|.||.+||+.+.+. |++|++++++.++ .++.+.+.|...+. ....+++
T Consensus 54 i~kVaVIGaG~MG~~IA~~la~a------G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~- 126 (460)
T 3k6j_A 54 VNSVAIIGGGTMGKAMAICFGLA------GIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH- 126 (460)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-
Confidence 48999999999999999999999 9998877665431 12334455542100 0134664
Q ss_pred hcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhc
Q 021114 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G 251 (317)
.+++||+||+++|.+... +++.++.+.++++++|+ .++++.+..+.+ .++...+|++.||..|...+
T Consensus 127 al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia~---~~~~p~r~iG~HffnPv~~m------- 196 (460)
T 3k6j_A 127 KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISS---VLRDPSNLVGIHFFNPANVI------- 196 (460)
T ss_dssp GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHHT---TSSSGGGEEEEECCSSTTTC-------
T ss_pred HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHHH---hccCCcceEEEEecchhhhC-------
Confidence 789999999999987643 48889999999999996 567777766654 33444689999998876541
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
...-+++...++++.++.+..+++.+|...+.
T Consensus 197 -------~LvEIv~g~~Ts~e~~~~~~~l~~~lGk~~v~ 228 (460)
T 3k6j_A 197 -------RLVEIIYGSHTSSQAIATAFQACESIKKLPVL 228 (460)
T ss_dssp -------CEEEEECCSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -------CEEEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 24557788889999999999999999965544
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.3e-13 Score=130.07 Aligned_cols=146 Identities=13% Similarity=0.096 Sum_probs=111.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|+|||||+|.||.+||++|. . |++|++++++ ++..+.+.+. ++.. ..++++ +++||+||.
T Consensus 13 ~~V~vIG~G~MG~~iA~~la-a------G~~V~v~d~~-~~~~~~~~~~l~~~~~~~i~~----~~~~~~-~~~aDlVie 79 (293)
T 1zej_A 13 MKVFVIGAGLMGRGIAIAIA-S------KHEVVLQDVS-EKALEAAREQIPEELLSKIEF----TTTLEK-VKDCDIVME 79 (293)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSC-HHHHHHHHHHSCGGGGGGEEE----ESSCTT-GGGCSEEEE
T ss_pred CeEEEEeeCHHHHHHHHHHH-c------CCEEEEEECC-HHHHHHHHHHHHHHHhCCeEE----eCCHHH-HcCCCEEEE
Confidence 89999999999999999999 9 9998776655 4455566555 4543 346666 899999999
Q ss_pred ccCCchHHH--HHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceE
Q 021114 185 LISDAAQAD--NYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 185 avP~~~~~~--vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
++|.....+ ++.++.+. ++++++ +++++.+..+.+ ......++++.||--|... +...
T Consensus 80 avpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf~~Pv~~--------------~~lv 140 (293)
T 1zej_A 80 AVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHWMNPPHV--------------MPLV 140 (293)
T ss_dssp CCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT--------------CCEE
T ss_pred cCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEecCcccc--------------CCEE
Confidence 999988643 66776554 999986 677777765554 2333457999999766433 2466
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+++...++++.++.++.+++.+|...+
T Consensus 141 eiv~g~~t~~~~~~~~~~l~~~lGk~~v 168 (293)
T 1zej_A 141 EIVISRFTDSKTVAFVEGFLRELGKEVV 168 (293)
T ss_dssp EEEECTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHcCCeEE
Confidence 6888888999999999999999996543
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.5e-14 Score=138.70 Aligned_cols=161 Identities=21% Similarity=0.268 Sum_probs=111.7
Q ss_pred ccccchhhhhhcCCCcccc--cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 85 SLANRDEFIVRGGRDLFKL--LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~--~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
++..+++. +|+|+|.... ...+|.| ++|||||+|+||.++|+.|+.+ |++|+++++..... .|+
T Consensus 138 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~dr~~~~~------~g~ 203 (333)
T 3ba1_A 138 RICECDKY-VRRGAWKFGDFKLTTKFSG-KRVGIIGLGRIGLAVAERAEAF------DCPISYFSRSKKPN------TNY 203 (333)
T ss_dssp THHHHHHH-HHTTGGGGCCCCCCCCCTT-CCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSCCTT------CCS
T ss_pred CHHHHHHH-HHcCCCCccccccccccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCchhc------cCc
Confidence 35566767 8999996421 2468999 9999999999999999999998 99987766553321 255
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHH-HHH-HHHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl-~ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV 233 (317)
.. ..+++|++++||+|++++|++..+ .++ ++.++.||+|++|++++ |..+ ..+++ +.......+|+
T Consensus 204 ~~----~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~-g~i~ga~lDv~ 278 (333)
T 3ba1_A 204 TY----YGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVE-GRLGGAGLDVF 278 (333)
T ss_dssp EE----ESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHH-TSSCEEEESCC
T ss_pred ee----cCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHc-CCCeEEEEecC
Confidence 42 458999999999999999998654 566 46888999999999765 4321 12222 11112246777
Q ss_pred EeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHH
Q 021114 234 AVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (317)
Q Consensus 234 ~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~ 276 (317)
..+|.. .. .++.. .|+++|||.. .+.++.+.
T Consensus 279 ~~EP~~-~~---~L~~~--------~nviltPH~~~~t~e~~~~ 310 (333)
T 3ba1_A 279 EREPEV-PE---KLFGL--------ENVVLLPHVGSGTVETRKV 310 (333)
T ss_dssp TTTTCC-CG---GGGGC--------TTEEECSSCTTCSHHHHHH
T ss_pred CCCCCC-cc---hhhcC--------CCEEECCcCCCCCHHHHHH
Confidence 788843 22 34543 6899999863 34444433
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-14 Score=139.66 Aligned_cols=166 Identities=16% Similarity=0.063 Sum_probs=114.8
Q ss_pred ccccchhhhhh-cCCCcc--cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 85 SLANRDEFIVR-GGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 85 ~~~~~~e~~v~-~G~w~f--~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
++..+++. +| +|+|.+ .....+|.| ++|||||+|.||+++|+.|+.+ |++|+++++...+ ..+.+
T Consensus 121 ~~~~~~~~-~~~~g~~~w~~~~~~~~l~g-ktvgIiGlG~IG~~vA~~l~~~------G~~V~~~d~~~~~----~~~~~ 188 (343)
T 2yq5_A 121 KIGEFRYR-MDHDHDFTWPSNLISNEIYN-LTVGLIGVGHIGSAVAEIFSAM------GAKVIAYDVAYNP----EFEPF 188 (343)
T ss_dssp THHHHHHH-HHHHCCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCG----GGTTT
T ss_pred chHHHHHH-HHHcCCcccccCCCccccCC-CeEEEEecCHHHHHHHHHHhhC------CCEEEEECCChhh----hhhcc
Confidence 35566766 78 887644 345689999 9999999999999999999999 9998766655432 12233
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~v 232 (317)
+. ..+++|++++||+|++++|.+..++ ++. +.++.||+|++|++++ |-. ...+++ +.......+|
T Consensus 189 ~~-----~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~-g~i~gA~LDV 262 (343)
T 2yq5_A 189 LT-----YTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQD-GEIAGAGLDT 262 (343)
T ss_dssp CE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSCEEESC
T ss_pred cc-----ccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHc-CCCcEEEecc
Confidence 33 3489999999999999999987765 664 7889999999999876 321 223332 3333446778
Q ss_pred EEeccCC-CCh--------h-hHHHHhhcccccCCCceEEEEecc-CCCHHHHHH
Q 021114 233 IAVCPKG-MGP--------S-VRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (317)
Q Consensus 233 V~vhPn~-pg~--------~-~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~ 276 (317)
...+|.. +.. . ...|+.. -|+++|||- ..+.++.+.
T Consensus 263 ~~~EP~~~~~~~~~~~~l~~~~~pL~~~--------~nvilTPHia~~t~ea~~~ 309 (343)
T 2yq5_A 263 LAGESSYFGHTGLTDSEIPEDYKTLAKM--------PNVVITPHSAFYTETSIRN 309 (343)
T ss_dssp CTTGGGTTTCCSCCTTTSCHHHHHHTTC--------TTEEECSSCTTCBHHHHHH
T ss_pred cccCCCccccccccccccccchhHHhcC--------CCEEECCccccchHHHHHH
Confidence 8788831 110 0 1235543 689999986 344555443
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=130.83 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=107.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+||||||+|+||.+||++|.+. |++|++++|+ .+..+...+.|... ..++.|+++++|+||+++|+.+
T Consensus 3 M~kIgfIGlG~MG~~mA~~L~~~------G~~v~v~dr~-~~~~~~l~~~Ga~~----a~s~~e~~~~~dvv~~~l~~~~ 71 (300)
T 3obb_A 3 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 71 (300)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTTCSEEEECCSCHH
T ss_pred cCEEEEeeehHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHcCCEE----cCCHHHHHhcCCceeecCCchH
Confidence 58999999999999999999999 9998877766 44456677788876 6799999999999999999988
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 191 QAD-NYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 191 ~~~-vl~---ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+.+ ++. .+.+.+++|++|+|++-+... .+.+ ..-..++.|+- +|-.=+.. .=+.| . ..|
T Consensus 72 ~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~--~~~~~G~~~lD-aPVsGg~~---~A~~G-------~-L~i 137 (300)
T 3obb_A 72 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTA---GAAAG-------T-LTF 137 (300)
T ss_dssp HHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHH--HHHTTTCEEEE-CCEESCHH---HHHHT-------C-EEE
T ss_pred HHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCEEEe-cCCCCCHH---HHHhC-------C-EEE
Confidence 865 665 378899999999998876432 2221 11134677774 23111111 11123 2 334
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
-+..+ +++.+.++.+++.+|..
T Consensus 138 mvGG~--~~~~~~~~p~l~~~g~~ 159 (300)
T 3obb_A 138 MVGGD--AEALEKARPLFEAMGRN 159 (300)
T ss_dssp EEESC--HHHHHHHHHHHHHHEEE
T ss_pred EEeCC--HHHHHHHHHHHHHhCCC
Confidence 45554 78999999999999954
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-14 Score=140.03 Aligned_cols=166 Identities=17% Similarity=0.093 Sum_probs=114.2
Q ss_pred ccccchhhhhhcCCCcccc--------cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH
Q 021114 85 SLANRDEFIVRGGRDLFKL--------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~--------~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~ 156 (317)
++..+++. +|+|+|.... +..++.| ++|||||+|.||.++|+.|+.+ |++|+++++...+. .
T Consensus 136 ~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~~l~g-~tvGIIG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~~--~ 205 (347)
T 1mx3_A 136 RATWLHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--V 205 (347)
T ss_dssp CHHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--H
T ss_pred hHHHHHHH-HHcCCcccccccccccccCccCCCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCcchh--h
Confidence 45566666 8999994321 2368999 9999999999999999999999 99987766543332 3
Q ss_pred HHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHH-HHHHhcCCCCcEEEEecCch-------hhhhhhcccCCC
Q 021114 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFP 227 (317)
Q Consensus 157 A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl-~ei~~~lk~gaiVi~~~Gv~-------l~~~~~~~~~l~ 227 (317)
+.+.|+.. ..+++|++++||+|++++|++..+ .++ ++.++.||+|++|++++... ...+++ +....
T Consensus 206 ~~~~g~~~----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~-g~i~g 280 (347)
T 1mx3_A 206 ERALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE-GRIRG 280 (347)
T ss_dssp HHHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEE
T ss_pred HhhcCCee----cCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHh-CCCcE
Confidence 34557653 458999999999999999998765 477 47889999999999776332 122222 21222
Q ss_pred CCccEEEeccCCC-ChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHHH
Q 021114 228 KNIGVIAVCPKGM-GPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (317)
Q Consensus 228 ~~i~vV~vhPn~p-g~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~ 276 (317)
...+|+..+|... ... ++. -.|++++||-. .+.+..+.
T Consensus 281 A~lDV~~~EP~~~~~~~---L~~--------~~nvi~tPHia~~t~~~~~~ 320 (347)
T 1mx3_A 281 AALDVHESEPFSFSQGP---LKD--------APNLICTPHAAWYSEQASIE 320 (347)
T ss_dssp EEESCCSSSSCCTTSST---TTT--------CSSEEECSSCTTCCHHHHHH
T ss_pred EEEeecccCCCCCCCch---HHh--------CCCEEEEchHHHHHHHHHHH
Confidence 3467788888431 122 222 26899999864 34444433
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=135.88 Aligned_cols=163 Identities=21% Similarity=0.241 Sum_probs=111.8
Q ss_pred ccccchhhhhhcCCCc-----cc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH
Q 021114 85 SLANRDEFIVRGGRDL-----FK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE 156 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~-----f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~ 156 (317)
++..+++. +|+|+|. +. ....+|.| ++|||||+|.||.++|+.|+.+ |++|+++++.... +.
T Consensus 118 ~~~~~~~~-~~~~~w~~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~~--~~ 187 (334)
T 2dbq_A 118 HVVKGDRF-VRSGEWKKRGVAWHPKWFLGYDVYG-KTIGIIGLGRIGQAIAKRAKGF------NMRILYYSRTRKE--EV 187 (334)
T ss_dssp THHHHHHH-HHTSHHHHTTCCCCTTTTCCCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH--HH
T ss_pred CHHHHHHH-HHcCCCcccccccccccccccCCCC-CEEEEEccCHHHHHHHHHHHhC------CCEEEEECCCcch--hh
Confidence 35556666 8999995 21 12468999 9999999999999999999998 9998766655433 44
Q ss_pred HHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCC
Q 021114 157 ARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFP 227 (317)
Q Consensus 157 A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~ 227 (317)
+.+.|+. ..++++++++||+|++++|++..+ .++. ++++.||++++|++++ |..+ ..+.+ +....
T Consensus 188 ~~~~g~~-----~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~-~~i~g 261 (334)
T 2dbq_A 188 ERELNAE-----FKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKE-GWIAG 261 (334)
T ss_dssp HHHHCCE-----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSE
T ss_pred HhhcCcc-----cCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCeeE
Confidence 5556765 348899999999999999999865 4664 7889999999999765 4322 12222 11111
Q ss_pred CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHHH
Q 021114 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (317)
Q Consensus 228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e 275 (317)
...+|...+| .+ ...++.. .++++|||.. .+.+..+
T Consensus 262 a~lDv~~~EP-~~---~~~L~~~--------~~vi~tPh~~~~t~~~~~ 298 (334)
T 2dbq_A 262 AGLDVFEEEP-YY---NEELFKL--------DNVVLTPHIGSASFGARE 298 (334)
T ss_dssp EEESCCSSSS-CC---CHHHHHC--------TTEEECSSCTTCSHHHHH
T ss_pred EEecCCCCCC-CC---CchhhcC--------CCEEECCccCCCcHHHHH
Confidence 2345555556 22 2456653 6899999863 3444333
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.49 E-value=3.8e-14 Score=136.36 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=110.9
Q ss_pred ccccchhhhhhcCC---Ccc-c----ccccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccHH
Q 021114 85 SLANRDEFIVRGGR---DLF-K----LLPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFA 155 (317)
Q Consensus 85 ~~~~~~e~~v~~G~---w~f-~----~~~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~~ 155 (317)
++..+++. +|+|+ |+. . ....+|.| ++|||||+|.||.++|+.++ .+ |++|+++++.. ...+
T Consensus 131 ~~~~~~~~-~~~g~~~~w~~~~~~~~~~~~~l~g-~~vgIIG~G~IG~~vA~~l~~~~------G~~V~~~d~~~-~~~~ 201 (348)
T 2w2k_A 131 LASYSERA-ARTGDPETFNRVHLEIGKSAHNPRG-HVLGAVGLGAIQKEIARKAVHGL------GMKLVYYDVAP-ADAE 201 (348)
T ss_dssp THHHHHHH-HTTCCHHHHHHHHHHHHTTCCCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEECSSC-CCHH
T ss_pred ChHHHHHH-HHcCCCcccccccccccccCcCCCC-CEEEEEEECHHHHHHHHHHHHhc------CCEEEEECCCC-cchh
Confidence 35666777 89999 932 1 23478999 99999999999999999999 88 99886655543 3344
Q ss_pred HHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEecCchh---hhhhh---cccCCC
Q 021114 156 EARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSHGFLL---GHLQS---IGLDFP 227 (317)
Q Consensus 156 ~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~Gv~l---~~~~~---~~~~l~ 227 (317)
.+.+.|+.. ..++++++++||+|++++|++..+ .++. ++++.||+|++|++++...+ ..+.+ .+....
T Consensus 202 ~~~~~g~~~----~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~g 277 (348)
T 2w2k_A 202 TEKALGAER----VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLS 277 (348)
T ss_dssp HHHHHTCEE----CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEE
T ss_pred hHhhcCcEE----eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceE
Confidence 455567663 348899999999999999998765 4664 78889999999997764422 12211 111101
Q ss_pred CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC-CCHHHH
Q 021114 228 KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRAT 274 (317)
Q Consensus 228 ~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~ 274 (317)
...+|...+| .+ ...++.. .+++++||.. .+.+..
T Consensus 278 aglDv~~~EP-~~---~~~L~~~--------~nviltPH~~~~t~e~~ 313 (348)
T 2w2k_A 278 AGLDVHEFEP-QV---SKELIEM--------KHVTLTTHIGGVAIETF 313 (348)
T ss_dssp EEESSCTTTT-SC---CHHHHTS--------SSEEECCSCTTCSHHHH
T ss_pred EEeccCCCCC-CC---CchhhcC--------CCEEEcCcCCCCCHHHH
Confidence 1233333445 22 2345653 6899999863 344443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-13 Score=130.06 Aligned_cols=158 Identities=15% Similarity=0.042 Sum_probs=109.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..... ++|+|||+|+||.++|++|.+. |++|+++++. .+..+...+.|... ..+++|+++++|+||++
T Consensus 17 ~~~~m-~~I~iIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~~~~~~aDvvi~~ 84 (310)
T 3doj_A 17 RGSHM-MEVGFLGLGIMGKAMSMNLLKN------GFKVTVWNRT-LSKCDELVEHGASV----CESPAEVIKKCKYTIAM 84 (310)
T ss_dssp -CCCS-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-GGGGHHHHHTTCEE----CSSHHHHHHHCSEEEEC
T ss_pred ccccC-CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCeE----cCCHHHHHHhCCEEEEE
Confidence 44444 8999999999999999999999 9998776655 44455666778774 56899999999999999
Q ss_pred cCCchH-HHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 186 ISDAAQ-ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 186 vP~~~~-~~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
+|+... .+++ +++.+.+++|++|++++++.....+.....+ ..++.|+. +|-..+.. ... . |..
T Consensus 85 vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~-~pv~g~~~--~a~-~-------g~l 153 (310)
T 3doj_A 85 LSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE-GPVSGSKK--PAE-D-------GQL 153 (310)
T ss_dssp CSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH--HHH-H-------TCE
T ss_pred cCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe-CCCCCChh--HHh-c-------CCe
Confidence 998654 5577 6788999999999998876432211100011 23567776 67332222 111 2 244
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
.+++.. + ++..+.++.+++.+|...+
T Consensus 154 ~i~~gg-~--~~~~~~~~~ll~~~g~~~~ 179 (310)
T 3doj_A 154 IILAAG-D--KALFEESIPAFDVLGKRSF 179 (310)
T ss_dssp EEEEEE-C--HHHHHHHHHHHHHHEEEEE
T ss_pred EEEEcC-C--HHHHHHHHHHHHHhCCCEE
Confidence 444433 3 6899999999999995433
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.4e-13 Score=134.33 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=116.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~---------~~~~ 170 (317)
+++|+|||+|+||.++|+.|.+. |++|++++++ ++..+.+.+ .|..... ....
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~a------G~~V~l~D~~-~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 77 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASH------GHQVLLYDIS-AEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVT 77 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEEC
T ss_pred CCEEEEECcCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeC
Confidence 37899999999999999999999 9998766554 444444432 3432100 0124
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++ +.+++||+||+++|++... +++.++.+.++++++|+ +++++.+..+.. .+....+|++.||..|.+.+
T Consensus 78 ~~-~~~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i~~ia~---~~~~p~~~ig~hf~~Pa~v~--- 150 (483)
T 3mog_A 78 DI-HALAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAA---EIKNPERVAGLHFFNPAPVM--- 150 (483)
T ss_dssp CG-GGGGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TSSSGGGEEEEEECSSTTTC---
T ss_pred CH-HHhcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCHHHHHH---HccCccceEEeeecChhhhC---
Confidence 55 4689999999999998653 58899999999999985 788888766654 33445689999999887752
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.-..+++...++++.++.++.+++.+|...+.
T Consensus 151 -----------~Lvevv~g~~Ts~e~~~~~~~l~~~lGk~~v~ 182 (483)
T 3mog_A 151 -----------KLVEVVSGLATAAEVVEQLCELTLSWGKQPVR 182 (483)
T ss_dssp -----------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------CeEEEecCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 24557788889999999999999999965443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-13 Score=132.01 Aligned_cols=158 Identities=20% Similarity=0.119 Sum_probs=109.8
Q ss_pred ccccchhhhhhcCCCcc-c---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC
Q 021114 85 SLANRDEFIVRGGRDLF-K---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f-~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (317)
++..+++. +|+|+|.. . ....++.| ++|||||+|.||.++|+.|+.+ |++|++++++.. ..+.+.+.
T Consensus 127 ~~~~~~~~-~~~~~w~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~iA~~l~~~------G~~V~~~d~~~~-~~~~~~~~ 197 (330)
T 2gcg_A 127 RLPEAIEE-VKNGGWTSWKPLWLCGYGLTQ-STVGIIGLGRIGQAIARRLKPF------GVQRFLYTGRQP-RPEEAAEF 197 (330)
T ss_dssp THHHHHHH-HHTTCCCSCCTTSSCBCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCCEEEEESSSC-CHHHHHTT
T ss_pred CHHHHHHH-HHcCCCcccCcccccCcCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCc-chhHHHhc
Confidence 35556666 89999953 1 12378999 9999999999999999999998 999876665433 34445556
Q ss_pred CceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHH-HHHHhcCCCCcEEEEecCchh-------hhhhhcccCCCCCcc
Q 021114 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNY-EKIFSCMKPNSILGLSHGFLL-------GHLQSIGLDFPKNIG 231 (317)
Q Consensus 161 G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl-~ei~~~lk~gaiVi~~~Gv~l-------~~~~~~~~~l~~~i~ 231 (317)
|+.. .++++++++||+|++++|++..+ .++ +++++.||+|++|++++...+ ..+++ +.......+
T Consensus 198 g~~~-----~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~-~~i~ga~lD 271 (330)
T 2gcg_A 198 QAEF-----VSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALAS-GKIAAAGLD 271 (330)
T ss_dssp TCEE-----CCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHH-TSSSEEEES
T ss_pred Ccee-----CCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHc-CCccEEEeC
Confidence 7663 38899999999999999998764 466 478889999999997653321 12222 111112356
Q ss_pred EEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 232 vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
|+..+|..+.+. ++.. .+++++||-.
T Consensus 272 v~~~epl~~~~~---l~~~--------~nvi~tPh~~ 297 (330)
T 2gcg_A 272 VTSPEPLPTNHP---LLTL--------KNCVILPHIG 297 (330)
T ss_dssp CCSSSSCCTTCG---GGGC--------TTEEECCSCT
T ss_pred CCCCCCCCCCCh---hhcC--------CCEEECCCCC
Confidence 666666443332 3432 5788999863
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=126.71 Aligned_cols=153 Identities=18% Similarity=0.167 Sum_probs=108.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc-h
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA-A 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~-~ 190 (317)
|+|+|||+|.||.++|++|.+. |++|++++++ .+..+...+.|+.. ..+++|+++++|+||+++|+. .
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~~~~~~aDvvi~~vp~~~~ 70 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKA------GCSVTIWNRS-PEKAEELAALGAER----AATPCEVVESCPVTFAMLADPAA 70 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-GGGGHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEcCCHHH
Confidence 7999999999999999999999 9998766555 44456666778774 579999999999999999965 5
Q ss_pred HHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 191 QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
..+++ +++.+.+++|++|+++++......+.....+ ..++.|+. +|-..+... . ..| ...+++.
T Consensus 71 ~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a-~~g-------~l~~~~g- 138 (287)
T 3pef_A 71 AEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE-APVSGSKKP--A-EDG-------TLIILAA- 138 (287)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHHH--H-HHT-------CEEEEEE-
T ss_pred HHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE-CCCcCCHHH--H-hcC-------CEEEEEe-
Confidence 55677 7889999999999998876432211100011 13567776 774433321 1 222 3343433
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcE
Q 021114 267 QDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
. +++..+.++.+++.+|...+
T Consensus 139 g--~~~~~~~~~~ll~~~g~~~~ 159 (287)
T 3pef_A 139 G--DRNLYDEAMPGFEKMGKKII 159 (287)
T ss_dssp E--CHHHHHHHHHHHHHHEEEEE
T ss_pred C--CHHHHHHHHHHHHHhCCCeE
Confidence 3 36889999999999996433
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=5.8e-13 Score=121.24 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=106.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHH-HHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+.+ ++|+|||+|.||.++|+.|.+. |++ |.+++++ .+..+.. .+.|+.. ..+++++++++|+||+
T Consensus 7 ~~~~-m~i~iiG~G~mG~~~a~~l~~~------g~~~v~~~~~~-~~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~ 74 (266)
T 3d1l_A 7 SIED-TPIVLIGAGNLATNLAKALYRK------GFRIVQVYSRT-EESARELAQKVEAEY----TTDLAEVNPYAKLYIV 74 (266)
T ss_dssp CGGG-CCEEEECCSHHHHHHHHHHHHH------TCCEEEEECSS-HHHHHHHHHHTTCEE----ESCGGGSCSCCSEEEE
T ss_pred CCCC-CeEEEEcCCHHHHHHHHHHHHC------CCeEEEEEeCC-HHHHHHHHHHcCCce----eCCHHHHhcCCCEEEE
Confidence 3556 8999999999999999999998 988 5555444 3334333 3347664 4588899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec-CchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
++|+..+.++++++.+.++++++|++++ |.....+.. .++. .. ..||..|... +......+.++++
T Consensus 75 av~~~~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~l~~---~~~~-~~--~~~~~~~~~g-------~~~~~~~~~~~~v 141 (266)
T 3d1l_A 75 SLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEG---HVPH-YG--VFYPMQTFSK-------QREVDFKEIPFFI 141 (266)
T ss_dssp CCCHHHHHHHHHHHHTTCCTTCEEEECCTTSCGGGSTT---TCSS-EE--EEEECCCC----------CCCCCTTCCEEE
T ss_pred ecCHHHHHHHHHHHHhhcCCCcEEEECCCCCchHHHHH---HHHh-cc--CcCCceecCC-------CchhhcCCCeEEE
Confidence 9999988889999999999999998765 455444432 3332 11 2455444211 0001113355543
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT 293 (317)
...+++..+.++.+++.+|. .++.+.
T Consensus 142 ---~~~~~~~~~~~~~l~~~~g~-~~~~~~ 167 (266)
T 3d1l_A 142 ---EASSTEDAAFLKAIASTLSN-RVYDAD 167 (266)
T ss_dssp ---EESSHHHHHHHHHHHHTTCS-CEEECC
T ss_pred ---ecCCHHHHHHHHHHHHhcCC-cEEEeC
Confidence 23457889999999999995 444444
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=132.44 Aligned_cols=167 Identities=15% Similarity=0.054 Sum_probs=113.0
Q ss_pred ccccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 85 SLANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
++..+++. +|+|+|... ....++.| ++|||||+|.||.++|+.|+.+ |++|+++++...+. +.+ ++.
T Consensus 121 ~~~~~~~~-~~~g~w~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~~~-~~~ 188 (333)
T 1j4a_A 121 QDKAMDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNPE---LEK-KGY 188 (333)
T ss_dssp THHHHHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCHH---HHH-TTC
T ss_pred CHHHHHHH-HHcCCCccCCcccccCCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcchh---HHh-hCe
Confidence 45667777 899998542 24578999 9999999999999999999999 99987666554322 222 232
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. ...+++ +.......+|+.
T Consensus 189 ~----~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~-g~i~gA~LDV~~ 263 (333)
T 1j4a_A 189 Y----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYE 263 (333)
T ss_dssp B----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCT
T ss_pred e----cCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCceEEEEecCC
Confidence 1 2389999999999999999987654 664 6889999999999765 321 122222 222233567777
Q ss_pred eccC--CCCh--------hhHHHHhhcccccCCCceEEEEeccC-CCHHHHHH
Q 021114 235 VCPK--GMGP--------SVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (317)
Q Consensus 235 vhPn--~pg~--------~~r~lf~~G~e~~g~G~~~iitp~~d-~~~ea~e~ 276 (317)
.+|. .+.+ ....|+.. -|+++|||-- .+.++.+.
T Consensus 264 ~EP~~l~~~~~~~~~~~p~~~~L~~~--------~nvilTPHia~~t~~~~~~ 308 (333)
T 1j4a_A 264 GEVGIFNEDWEGKEFPDARLADLIAR--------PNVLVTPKTAFYTTHAVRN 308 (333)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHC--------TTEEECSSCTTCBHHHHHH
T ss_pred CCCCccccccccccCCccchhhHHhC--------CCEEECCccccCHHHHHHH
Confidence 8873 1111 11235554 5899999873 34444333
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.46 E-value=9.3e-14 Score=132.87 Aligned_cols=162 Identities=18% Similarity=0.169 Sum_probs=109.1
Q ss_pred ccccchhhhhhcCCCcc----cc---cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH
Q 021114 85 SLANRDEFIVRGGRDLF----KL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f----~~---~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A 157 (317)
++..+++. +|+|+|.. .. ++.+|.| ++|||||+|.||.++|+.|+.+ |++|+++++.... +.+
T Consensus 115 ~~~~~~~~-~~~g~w~~~~~~~~~~~~~~~l~g-~~vgIIG~G~iG~~vA~~l~~~------G~~V~~~d~~~~~--~~~ 184 (333)
T 2d0i_A 115 KIHYADKF-IRRGEWESHAKIWTGFKRIESLYG-KKVGILGMGAIGKAIARRLIPF------GVKLYYWSRHRKV--NVE 184 (333)
T ss_dssp CHHHHHHH-HHTTCCCCHHHHHTTSCCCCCSTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSCCH--HHH
T ss_pred HHHHHHHH-HHcCCCCcCcccccCCcccCCCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEECCCcch--hhh
Confidence 35666767 89999952 11 1278999 9999999999999999999999 9998766655432 455
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCC
Q 021114 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPK 228 (317)
Q Consensus 158 ~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~ 228 (317)
.+.|+.. .++++++++||+|++++|.+..+ .++. ++++.||+| +|++++ |..+ ..+++ +.....
T Consensus 185 ~~~g~~~-----~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~-~~i~ga 257 (333)
T 2d0i_A 185 KELKARY-----MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQ-GKLKGY 257 (333)
T ss_dssp HHHTEEE-----CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHT-TCBCEE
T ss_pred hhcCcee-----cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHc-CCceEE
Confidence 5567652 48899999999999999999554 4665 678899999 988765 3322 11121 111112
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCc-eEEEEecc-CCCHHHHH
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGI-NSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~-~~iitp~~-d~~~ea~e 275 (317)
..+|...+|.. .+ .+|.. . ++++|||. ..+.+..+
T Consensus 258 glDv~~~EP~~-~~---~L~~~--------~~nviltPh~~~~t~~~~~ 294 (333)
T 2d0i_A 258 ATDVFEKEPVR-EH---ELFKY--------EWETVLTPHYAGLALEAQE 294 (333)
T ss_dssp EESCCSSSSCS-CC---GGGGC--------TTTEEECCSCTTCCHHHHH
T ss_pred EecCCCCCCCC-Cc---hHHcC--------CCCEEEcCccCCCcHHHHH
Confidence 34455555632 22 24442 6 79999986 33455443
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-13 Score=131.48 Aligned_cols=168 Identities=14% Similarity=0.026 Sum_probs=113.5
Q ss_pred ccccchhhhhhcCCCcc--cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 85 SLANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f--~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
++..+++. +|+|+|.. .....++.| ++|||||+|.||.++|+.|+.+ |++|+++++...+. + +.++
T Consensus 120 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~ 187 (331)
T 1xdw_A 120 HTAYTTSR-TAKKNFKVDAFMFSKEVRN-CTVGVVGLGRIGRVAAQIFHGM------GATVIGEDVFEIKG---I-EDYC 187 (331)
T ss_dssp THHHHHHH-HTTTCCCCCSTTCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCS---C-TTTC
T ss_pred CHHHHHHH-HHcCCCccccCcCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCccHH---H-Hhcc
Confidence 45667767 89999854 234578999 9999999999999999999999 99987666554332 1 1223
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEecCch-------hhhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSHGFL-------LGHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~Gv~-------l~~~~~~~~~l~~~i~vV 233 (317)
. ..++++++++||+|++++|.+..++ +++ +.++.||+|++|++++--. ...+++ +.......+|+
T Consensus 188 ~-----~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~-g~i~gA~LDV~ 261 (331)
T 1xdw_A 188 T-----QVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVES-GKLGGYGCDVL 261 (331)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCC
T ss_pred c-----cCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHh-CCceEEEEecC
Confidence 2 3489999999999999999987654 664 7889999999999776321 122222 22223456777
Q ss_pred EeccCC-C---------ChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHH
Q 021114 234 AVCPKG-M---------GPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (317)
Q Consensus 234 ~vhPn~-p---------g~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a 277 (317)
..+|.. | .+....|+.. .-|+++|||- ..+.++.+.+
T Consensus 262 ~~EP~~~~~~~~~~~~~~~~~~~L~~~-------~~nvilTPHia~~t~~~~~~~ 309 (331)
T 1xdw_A 262 DGEASVFGKDLEGQKLENPLFEKLVDL-------YPRVLITPHLGSYTDEAVKNM 309 (331)
T ss_dssp TTGGGTTTCCCTTSCCSSHHHHHHHHT-------TTTEEECCSCTTCSHHHHHHH
T ss_pred CCCCCcccccccccccCccchHHHHhC-------CCCEEEcCccccChHHHHHHH
Confidence 788731 1 1111234443 1379999987 3345544433
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.7e-13 Score=126.57 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=107.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|+||.++|++|.+. |++|++++++ .+..+...+.|... ...+++|++++||+||+++|+...
T Consensus 8 ~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~---~~~~~~e~~~~aDvvi~~vp~~~~ 77 (303)
T 3g0o_A 8 FHVGIVGLGSMGMGAARSCLRA------GLSTWGADLN-PQACANLLAEGACG---AAASAREFAGVVDALVILVVNAAQ 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCSE---EESSSTTTTTTCSEEEECCSSHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCeEEEEECC-HHHHHHHHHcCCcc---ccCCHHHHHhcCCEEEEECCCHHH
Confidence 7899999999999999999999 9998766554 44556666677652 135888999999999999999755
Q ss_pred -HHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 192 -ADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 192 -~~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
..++ +++.+.++++++|+++++......+.....+ ..++.|+. +|...+... -. .|...+++.
T Consensus 78 ~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~~---a~-------~g~l~~~~g- 145 (303)
T 3g0o_A 78 VRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD-APVSGGAVK---AA-------QGEMTVMAS- 145 (303)
T ss_dssp HHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE-CCEESCHHH---HH-------TTCEEEEEE-
T ss_pred HHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe-CCCCCChhh---hh-------cCCeEEEeC-
Confidence 4566 6788999999999998876432211100011 23567877 884433321 11 234454443
Q ss_pred cCCCHHHHHHHHHHHHHcCCCc
Q 021114 267 QDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~ 288 (317)
. +++..+.++.+++.+|...
T Consensus 146 g--~~~~~~~~~~ll~~~g~~~ 165 (303)
T 3g0o_A 146 G--SEAAFTRLKPVLDAVASNV 165 (303)
T ss_dssp C--CHHHHHHHHHHHHHHEEEE
T ss_pred C--CHHHHHHHHHHHHHHCCCE
Confidence 3 4789999999999999643
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=120.59 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=106.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--------CCcCCHHhhcC---cC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------GTLGDIYETIS---GS 179 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--------~~~~~~~e~v~---~A 179 (317)
+|+|+|||+|+||.++|..|.+. |++|++++++ ++..+...+.|..... -...+.+++.+ ++
T Consensus 3 ~m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (316)
T 2ew2_A 3 AMKIAIAGAGAMGSRLGIMLHQG------GNDVTLIDQW-PAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQV 75 (316)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCC
T ss_pred CCeEEEECcCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCC
Confidence 37999999999999999999999 9988776654 3344455555654210 00113344444 89
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEe-cCchh-hhhhhcccCCCCCccEEEeccC------CCChhhHHHHhhc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL-GHLQSIGLDFPKNIGVIAVCPK------GMGPSVRRLYVQG 251 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~-~Gv~l-~~~~~~~~~l~~~i~vV~vhPn------~pg~~~r~lf~~G 251 (317)
|+||+++|+....++++++.+.++++++|++. .|+.. ..+.+ .+++. +++..++. +|+..
T Consensus 76 d~vi~~v~~~~~~~v~~~l~~~l~~~~~iv~~~~g~~~~~~l~~---~~~~~-~vi~g~~~~~~~~~~p~~~-------- 143 (316)
T 2ew2_A 76 DLIIALTKAQQLDAMFKAIQPMITEKTYVLCLLNGLGHEDVLEK---YVPKE-NILVGITMWTAGLEGPGRV-------- 143 (316)
T ss_dssp SEEEECSCHHHHHHHHHHHGGGCCTTCEEEECCSSSCTHHHHTT---TSCGG-GEEEEEECCCCEEEETTEE--------
T ss_pred CEEEEEeccccHHHHHHHHHHhcCCCCEEEEecCCCCcHHHHHH---HcCCc-cEEEEEeeeeeEEcCCCEE--------
Confidence 99999999988888999999999999988865 57654 34443 44443 66644431 11111
Q ss_pred ccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 252 ~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
...+.|... +++....+++..+.+..+++.+|....+
T Consensus 144 -~~~~~g~~~-i~~~~~~~~~~~~~~~~ll~~~g~~~~~ 180 (316)
T 2ew2_A 144 -KLLGDGEIE-LENIDPSGKKFALEVVDVFQKAGLNPSY 180 (316)
T ss_dssp -EECSCCCEE-EEESSGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred -EEecCCcEE-EeecCCCccHHHHHHHHHHHhCCCCcEE
Confidence 012356666 4554445678889999999999976444
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=4.8e-13 Score=117.45 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=108.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~e~v~~ADvVI 183 (317)
|+|+||| .|.||.++++.|.+. |++|++.+|+.++..+.....| +. ..+++++++++|+||
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~D~Vi 69 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDASIT-----GMKNEDAAEACDIAV 69 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-----EEEHHHHHHHCSEEE
T ss_pred CeEEEEcCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhccccccCCCC-----hhhHHHHHhcCCEEE
Confidence 5899999 999999999999998 9988777665332222222212 22 247788899999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe-cCch--------------hhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLS-HGFL--------------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~-~Gv~--------------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
+++|+....++++++.+.++ +++|++. .|+. ...+++ .++ +..+++.||+.++......
T Consensus 70 ~~~~~~~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~---~~~-~~~~v~~~~~~~~~~~~~~- 143 (212)
T 1jay_A 70 LTIPWEHAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAE---VLE-SEKVVSALHTIPAARFANL- 143 (212)
T ss_dssp ECSCHHHHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHH---HHT-CSCEEECCTTCCHHHHHCT-
T ss_pred EeCChhhHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHH---hCC-CCeEEEEccchHHHHhhCc-
Confidence 99998887788888877774 8888755 4565 344443 344 3789999998887663210
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCcEE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTF 290 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~al-G~~~~~ 290 (317)
. +.|...++++.+ ++++.+.++++++.+ |...+.
T Consensus 144 ----~--~~~~~~~~~~g~--~~~~~~~v~~l~~~~~G~~~~~ 178 (212)
T 1jay_A 144 ----D--EKFDWDVPVCGD--DDESKKVVMSLISEIDGLRPLD 178 (212)
T ss_dssp ----T--CCCCEEEEEEES--CHHHHHHHHHHHHHSTTEEEEE
T ss_pred ----C--CCCCccEEEECC--cHHHHHHHHHHHHHcCCCCcee
Confidence 0 234444455554 578999999999999 965433
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.4e-13 Score=125.62 Aligned_cols=152 Identities=18% Similarity=0.107 Sum_probs=106.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|+|||+|+||.++|++|.+. |++|++++++. +..+...+.|... ..+++|+++++|+||+++|+..
T Consensus 1 M~~I~iiG~G~mG~~~a~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~advvi~~v~~~~ 69 (287)
T 3pdu_A 1 MTTYGFLGLGIMGGPMAANLVRA------GFDVTVWNRNP-AKCAPLVALGARQ----ASSPAEVCAACDITIAMLADPA 69 (287)
T ss_dssp CCCEEEECCSTTHHHHHHHHHHH------TCCEEEECSSG-GGGHHHHHHTCEE----CSCHHHHHHHCSEEEECCSSHH
T ss_pred CCeEEEEccCHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCee----cCCHHHHHHcCCEEEEEcCCHH
Confidence 47899999999999999999999 99987776554 4455556667764 5689999999999999999974
Q ss_pred -HHHHH---HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 191 -QADNY---EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 191 -~~~vl---~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
..+++ +++.+.++++++|++++.......+.....+ ..++.|+.. |...+.. .... |...+++
T Consensus 70 ~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~-pv~g~~~---~a~~-------g~l~~~~- 137 (287)
T 3pdu_A 70 AAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA-PVSGTKK---PAED-------GTLIILA- 137 (287)
T ss_dssp HHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC-CEECCHH---HHHH-------TCEEEEE-
T ss_pred HHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC-CccCCHH---HHhc-------CCEEEEE-
Confidence 45677 6788999999999998876432211100011 135667764 5332222 1122 2334333
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021114 266 HQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.. +++..+.++.+++.+|..
T Consensus 138 gg--~~~~~~~~~~ll~~~g~~ 157 (287)
T 3pdu_A 138 AG--DQSLFTDAGPAFAALGKK 157 (287)
T ss_dssp EE--CHHHHHHTHHHHHHHEEE
T ss_pred eC--CHHHHHHHHHHHHHhCCC
Confidence 33 368999999999999954
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.43 E-value=6.4e-14 Score=134.39 Aligned_cols=135 Identities=19% Similarity=0.114 Sum_probs=98.8
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|+|... ....+|.| +++||||+|.||..+|+.++.+ |++|+++++... +...+.++.
T Consensus 116 ~~~~~~~-~~~~~~~~~~~~~~~~l~g-~tvGIiG~G~IG~~va~~~~~f------g~~v~~~d~~~~---~~~~~~~~~ 184 (334)
T 3kb6_A 116 LKRIEDR-VKKLNFSQDSEILARELNR-LTLGVIGTGRIGSRVAMYGLAF------GMKVLCYDVVKR---EDLKEKGCV 184 (334)
T ss_dssp HHHHHHH-HHTTCCCCCGGGCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCC---HHHHHTTCE
T ss_pred ccccccc-ccccccccccccccceecC-cEEEEECcchHHHHHHHhhccc------CceeeecCCccc---hhhhhcCce
Confidence 4445656 888888442 34589999 9999999999999999999999 999865554322 233455665
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCch------hhhhhhcccCCCCCccEEE
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFL------LGHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~------l~~~~~~~~~l~~~i~vV~ 234 (317)
..+++|++++||+|++|+|.+..++ +++ +.+..||+|++|+-+ .|-. +..+++ +......++|..
T Consensus 185 -----~~~l~ell~~sDivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~-g~i~gA~LDV~~ 258 (334)
T 3kb6_A 185 -----YTSLDELLKESDVISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQR-GKFSGLGLDVFE 258 (334)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCEEEEEESCCT
T ss_pred -----ecCHHHHHhhCCEEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHh-CCceEEEEeCCC
Confidence 4689999999999999999999876 675 789999999999955 4532 223332 222233466666
Q ss_pred ecc
Q 021114 235 VCP 237 (317)
Q Consensus 235 vhP 237 (317)
.+|
T Consensus 259 ~EP 261 (334)
T 3kb6_A 259 DEE 261 (334)
T ss_dssp THH
T ss_pred CCC
Confidence 666
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=9.1e-14 Score=133.04 Aligned_cols=165 Identities=17% Similarity=0.148 Sum_probs=111.0
Q ss_pred ccccchhhhhhcCCCcc--cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 85 SLANRDEFIVRGGRDLF--KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f--~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
++..+++. +|+|+|.+ .....+|.| ++|||||+|.||.++|+.|+.+ |++|+++++...+. + +.++
T Consensus 119 ~~~~~~~~-~~~g~w~~~~~~~~~~l~g-~~vgIiG~G~IG~~~A~~l~~~------G~~V~~~d~~~~~~---~-~~~~ 186 (333)
T 1dxy_A 119 NMGKVQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG---D-HPDF 186 (333)
T ss_dssp THHHHHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS---C-CTTC
T ss_pred hHHHHHHH-HHcCCcccccCCCccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCcchh---h-Hhcc
Confidence 45667777 89999853 234579999 9999999999999999999999 99987666554322 1 1222
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV 233 (317)
. ..+++|++++||+|++++|.+..++ +++ +.++.||+|++|++++ |-. ...+++ +.......+|.
T Consensus 187 ~-----~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~-g~i~gA~LDV~ 260 (333)
T 1dxy_A 187 D-----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKS-GKLAGVGIDTY 260 (333)
T ss_dssp E-----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHT-TSEEEEEESSC
T ss_pred c-----cCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCccEEEEecC
Confidence 2 3489999999999999999988664 664 7889999999999765 321 122222 22222345666
Q ss_pred EeccC----------CCChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHH
Q 021114 234 AVCPK----------GMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (317)
Q Consensus 234 ~vhPn----------~pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e 275 (317)
..+|. .+......|+.. -|+++|||- ..+.++.+
T Consensus 261 ~~EP~~~~~~~~~~~~~~~~~~pL~~~--------~nvi~TPHia~~t~e~~~ 305 (333)
T 1dxy_A 261 EYETEDLLNLAKHGSFKDPLWDELLGM--------PNVVLSPHIAYYTETAVH 305 (333)
T ss_dssp TTHHHHHHHHHHHSSCCCHHHHHHHTC--------TTEEECSSCTTCSHHHHH
T ss_pred CCCCCcccccccccccCccchhHHhcC--------CCEEECCccccChHHHHH
Confidence 66662 111111234543 589999987 33444433
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.8e-12 Score=120.94 Aligned_cols=152 Identities=16% Similarity=0.195 Sum_probs=106.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|.||.++|++|.+. |++|++++++. +..+...+.|+.. ..+++|+++ +|+||+++|+...
T Consensus 16 ~~I~vIG~G~mG~~~A~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~-aDvvi~~vp~~~~ 83 (296)
T 3qha_A 16 LKLGYIGLGNMGAPMATRMTEW------PGGVTVYDIRI-EAMTPLAEAGATL----ADSVADVAA-ADLIHITVLDDAQ 83 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHTTS------TTCEEEECSST-TTSHHHHHTTCEE----CSSHHHHTT-SSEEEECCSSHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCH-HHHHHHHHCCCEE----cCCHHHHHh-CCEEEEECCChHH
Confidence 6899999999999999999999 99987776654 4455666778774 568999999 9999999997654
Q ss_pred -HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 192 -ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 192 -~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
.++++++.+.++++++|++++.......+.....+ ..++.|+. +|...+.. ....| ...++ +..
T Consensus 84 ~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~~g-------~l~~~-~gg-- 149 (296)
T 3qha_A 84 VREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVD-APVSGGAA---AAARG-------ELATM-VGA-- 149 (296)
T ss_dssp HHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEE-CCEESCHH---HHHHT-------CEEEE-EEC--
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHH---HHhcC-------CccEE-ecC--
Confidence 56889999999999999998876432211100011 22566665 45332222 11222 33433 333
Q ss_pred CHHHHHHHHHHHHHcCCCcE
Q 021114 270 DGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~ 289 (317)
+++..+.++.+++.+|...+
T Consensus 150 ~~~~~~~~~~ll~~~g~~~~ 169 (296)
T 3qha_A 150 DREVYERIKPAFKHWAAVVI 169 (296)
T ss_dssp CHHHHHHHHHHHHHHEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCeE
Confidence 37899999999999996433
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.40 E-value=9.1e-13 Score=123.57 Aligned_cols=155 Identities=17% Similarity=0.036 Sum_probs=106.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.. ++|||||+|+||.++|++|.+. |++|++++++ .+..+.+.+.|... ..+++|+++++|+||+++|
T Consensus 7 ~~~-~~IgiIG~G~mG~~~A~~l~~~------G~~V~~~dr~-~~~~~~~~~~g~~~----~~~~~e~~~~aDvVi~~vp 74 (306)
T 3l6d_A 7 SFE-FDVSVIGLGAMGTIMAQVLLKQ------GKRVAIWNRS-PGKAAALVAAGAHL----CESVKAALSASPATIFVLL 74 (306)
T ss_dssp CCS-CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHTCEE----CSSHHHHHHHSSEEEECCS
T ss_pred cCC-CeEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEEeC
Confidence 445 8999999999999999999999 9998766554 44455566668764 5689999999999999999
Q ss_pred CchH-HHHHH--HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceE
Q 021114 188 DAAQ-ADNYE--KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 188 ~~~~-~~vl~--ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
+... .+++. .+. .+++|++|++++..... .+.. ..-..++.|+.. |..-++.. .+ .+-..
T Consensus 75 ~~~~~~~v~~~~~l~-~~~~g~ivid~st~~~~~~~~l~~--~~~~~g~~~vda-pv~g~~~~-----~~-----~~~~~ 140 (306)
T 3l6d_A 75 DNHATHEVLGMPGVA-RALAHRTIVDYTTNAQDEGLALQG--LVNQAGGHYVKG-MIVAYPRN-----VG-----HRESH 140 (306)
T ss_dssp SHHHHHHHHTSTTHH-HHTTTCEEEECCCCCTTHHHHHHH--HHHHTTCEEEEE-EEESCGGG-----TT-----CTTCE
T ss_pred CHHHHHHHhcccchh-hccCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEec-ccccCccc-----cc-----CCceE
Confidence 8874 45775 554 46799999998876432 2211 011235677764 53222111 11 22223
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCcEEec
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSPFTFAT 292 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~~~~~t 292 (317)
++ +.. ++++.+.++.+++.+|. +++.+
T Consensus 141 i~-~gg--~~~~~~~~~~ll~~lg~-~~~~~ 167 (306)
T 3l6d_A 141 SI-HTG--DREAFEQHRALLEGLAG-HTVFL 167 (306)
T ss_dssp EE-EEE--CHHHHHHHHHHHHTTCS-EEEEC
T ss_pred EE-EcC--CHHHHHHHHHHHHHhcC-CEEEe
Confidence 33 333 37899999999999986 55544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-12 Score=125.61 Aligned_cols=150 Identities=17% Similarity=0.121 Sum_probs=108.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcC---CEEEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS---DLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~A---DvVIL 184 (317)
+++ ++|||||+|.||.++|++|.+. |++|+++++. .+..+.+.+.|+.. ..+++|+++++ |+||+
T Consensus 20 m~~-mkIgiIGlG~mG~~~A~~L~~~------G~~V~v~dr~-~~~~~~l~~~g~~~----~~s~~e~~~~a~~~DvVi~ 87 (358)
T 4e21_A 20 FQS-MQIGMIGLGRMGADMVRRLRKG------GHECVVYDLN-VNAVQALEREGIAG----ARSIEEFCAKLVKPRVVWL 87 (358)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCBC----CSSHHHHHHHSCSSCEEEE
T ss_pred hcC-CEEEEECchHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHCCCEE----eCCHHHHHhcCCCCCEEEE
Confidence 456 8999999999999999999999 9988766554 44556666677764 56899999999 99999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceE
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
++|+....++++++.+.+++|++|++++.... ..+.. .....++.|+.. |-.-+.. .-+.| . +
T Consensus 88 ~vp~~~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~--~l~~~g~~~vda-pVsGg~~---~a~~G-------~-~ 153 (358)
T 4e21_A 88 MVPAAVVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRAD--QMRAQGITYVDV-GTSGGIF---GLERG-------Y-C 153 (358)
T ss_dssp CSCGGGHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHH--HHHTTTCEEEEE-EEECGGG---HHHHC-------C-E
T ss_pred eCCHHHHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHH--HHHHCCCEEEeC-CCCCCHH---HHhcC-------C-e
Confidence 99999666799999999999999999887642 11111 111346777753 5221111 11123 3 3
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCC
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGS 286 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~ 286 (317)
|.+..+ +++.+.++.+++.+|.
T Consensus 154 -im~GG~--~~a~~~~~~ll~~lg~ 175 (358)
T 4e21_A 154 -LMIGGE--KQAVERLDPVFRTLAP 175 (358)
T ss_dssp -EEEESC--HHHHHHTHHHHHHHSC
T ss_pred -eeecCC--HHHHHHHHHHHHHhcc
Confidence 445544 7899999999999994
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=126.24 Aligned_cols=151 Identities=12% Similarity=0.111 Sum_probs=101.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
+||||||+|+||.+||++|.+. |++|++++|+.+ ..+...+.|... ..++.|+++++|+||+++|+..+
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~G~~~----~~s~~e~~~~~dvvi~~l~~~~~ 74 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEA------GYELVVWNRTAS-KAEPLTKLGATV----VENAIDAITPGGIVFSVLADDAA 74 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEC--------CTTTTTTCEE----CSSGGGGCCTTCEEEECCSSHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHcCCeE----eCCHHHHHhcCCceeeeccchhh
Confidence 5899999999999999999999 999887766543 344455678775 67999999999999999999887
Q ss_pred HH-HH-HHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 192 AD-NY-EKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 192 ~~-vl-~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
.+ ++ .++.+.++++.+++|.+.+.....++....+ ..++.|+- +|-.-+.. .-..| .-. +.+..+
T Consensus 75 ~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ld-apVsGg~~---~a~~g-------~l~-im~gG~ 142 (297)
T 4gbj_A 75 VEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVG-APIFARPE---AVRAK-------VGN-ICLSGN 142 (297)
T ss_dssp HHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECCHH---HHHHT-------CCE-EEEEEC
T ss_pred HHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceec-CCcCCCcc---ccccc-------cce-eecccc
Confidence 54 54 4788999999999998876432111100011 23567764 23111111 01122 323 334444
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 021114 269 VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~ 287 (317)
+++.+.++.+++.+|..
T Consensus 143 --~~~~~~~~~~l~~~g~~ 159 (297)
T 4gbj_A 143 --AGAKERIKPIVENFVKG 159 (297)
T ss_dssp --HHHHHHHHHHHHTTCSE
T ss_pred --hhHHHHHHHHHHHhhCC
Confidence 68899999999999954
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-12 Score=121.35 Aligned_cols=147 Identities=15% Similarity=0.046 Sum_probs=100.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCc------ccHHHHHHCCceecCCCcC-CHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS------RSFAEARAAGFTEENGTLG-DIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~------~s~~~A~~~G~~~~~~~~~-~~~e~v~~ADvVI 183 (317)
++|||||+|.||.++|++|.+. | ++|+++++... +..+.+.+.|+ . . +++|++++||+||
T Consensus 25 m~IgvIG~G~mG~~lA~~L~~~------G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~-----~~s~~e~~~~aDvVi 92 (317)
T 4ezb_A 25 TTIAFIGFGEAAQSIAGGLGGR------NAARLAAYDLRFNDPAASGALRARAAELGV-E-----PLDDVAGIACADVVL 92 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECGGGGCTTTHHHHHHHHHHTTC-E-----EESSGGGGGGCSEEE
T ss_pred CeEEEECccHHHHHHHHHHHHc------CCCeEEEEeCCCccccchHHHHHHHHHCCC-C-----CCCHHHHHhcCCEEE
Confidence 7999999999999999999999 9 99887766531 23344555666 2 4 6789999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccC-CCChhhHHHHhhcccccCCCceE
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINS 261 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn-~pg~~~r~lf~~G~e~~g~G~~~ 261 (317)
+++|+....+.++++.+.++++++|++++++.....+.....+ ..++.|+.. |- +|.... .| ...
T Consensus 93 ~avp~~~~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~-pv~g~~~a~-----~g-------~l~ 159 (317)
T 4ezb_A 93 SLVVGAATKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEG-AVMARVPPY-----AE-------KVP 159 (317)
T ss_dssp ECCCGGGHHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEE-EECSCSTTT-----GG-------GSE
T ss_pred EecCCHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec-cCCCCchhh-----cC-------CEE
Confidence 9999999998889999999999999998876432111100011 224556542 31 111110 12 234
Q ss_pred EEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021114 262 SFAVHQDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 262 iitp~~d~~~ea~e~a~~l~~alG~~~ 288 (317)
+++...+ + +.++.+++.+|...
T Consensus 160 i~vgg~~---~--~~~~~ll~~~g~~v 181 (317)
T 4ezb_A 160 ILVAGRR---A--VEVAERLNALGMNL 181 (317)
T ss_dssp EEEESTT---H--HHHHHHHHTTTCEE
T ss_pred EEEeCCh---H--HHHHHHHHHhCCCe
Confidence 4444433 2 78899999999543
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.8e-14 Score=125.58 Aligned_cols=152 Identities=14% Similarity=0.069 Sum_probs=103.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.+ ++|+|||+|+||.++|++|.+. |++|+++.|..+ .+...+.|+. ..+.+++++++|+||+++|
T Consensus 17 ~~~-~~I~iIG~G~mG~~la~~L~~~------G~~V~~~~r~~~--~~~~~~~g~~-----~~~~~~~~~~aDvVilav~ 82 (201)
T 2yjz_A 17 EKQ-GVVCIFGTGDFGKSLGLKMLQC------GYSVVFGSRNPQ--VSSLLPRGAE-----VLCYSEAASRSDVIVLAVH 82 (201)
Confidence 556 8999999999999999999998 988877666533 2233334554 2377889999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEE-ecCch--------hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGL-SHGFL--------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~--------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G 258 (317)
++...+++ ++.+ ++++++|++ +.|+. ...+++ .++. ..+|+.+||++.......-..| .
T Consensus 83 ~~~~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~---~~~~-~~vvra~~n~~a~~~~~g~l~g-----~- 150 (201)
T 2yjz_A 83 REHYDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQ---LVPG-AHVVKAFNTISAWALQSGTLDA-----S- 150 (201)
Confidence 98766666 4443 457888774 55664 234433 4444 4899999999877532111111 1
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~~ 288 (317)
...++ ... ++++.+.++.+++++|...
T Consensus 151 ~~~~~-~g~--~~~~~~~v~~ll~~~G~~~ 177 (201)
T 2yjz_A 151 RQVFV-CGN--DSKAKDRVMDIARTLGLTP 177 (201)
Confidence 12323 332 3678899999999999654
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.5e-12 Score=118.97 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=104.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHHCCceecC-------CCcC--CHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-------GTLG--DIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~-------~~~~--~~~e~v~~ADv 181 (317)
|+|+|||+|+||.++|..|.+. |++|+++++. +++..+...+.|..... .... +++++++++|+
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~ 74 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCE
Confidence 5899999999999999999999 9998777661 23344445555531000 0123 67788999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cc------hhhhhhhc-ccCCCC-CccEEEeccCCCChhhHHHHhhcc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH-GF------LLGHLQSI-GLDFPK-NIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv------~l~~~~~~-~~~l~~-~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
||+++|+....++++++.+ ++++++|+++. |+ ....+.+. ...++. ....++.+|+.+.. ..
T Consensus 75 vi~~v~~~~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~~~~----~~---- 145 (335)
T 1txg_A 75 VLLGVSTDGVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIARE----VA---- 145 (335)
T ss_dssp EEECSCGGGHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHH----HH----
T ss_pred EEEcCChHHHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCcHHH----HH----
Confidence 9999999988889999999 99999988765 87 22233220 001121 11355777866321 11
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+|.+..+++.. .+++..+.++.+++..|.....
T Consensus 146 ----~g~~~~~~~~~-~~~~~~~~~~~ll~~~g~~~~~ 178 (335)
T 1txg_A 146 ----KRMPTTVVFSS-PSESSANKMKEIFETEYFGVEV 178 (335)
T ss_dssp ----TTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEE
T ss_pred ----ccCCcEEEEEe-CCHHHHHHHHHHhCCCcEEEEe
Confidence 23433344443 3478889999999988865333
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.36 E-value=5.8e-12 Score=118.79 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=105.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.... ++|+|||+|.||.++|++|.+. |++|+++++. .+..+...+.|+.. ..+++|+++++|+||+++
T Consensus 28 ~~~~-~~I~iIG~G~mG~~~a~~l~~~------G~~V~~~dr~-~~~~~~l~~~g~~~----~~~~~e~~~~aDvVi~~v 95 (320)
T 4dll_A 28 DPYA-RKITFLGTGSMGLPMARRLCEA------GYALQVWNRT-PARAASLAALGATI----HEQARAAARDADIVVSML 95 (320)
T ss_dssp -CCC-SEEEEECCTTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHTTTCEE----ESSHHHHHTTCSEEEECC
T ss_pred ccCC-CEEEEECccHHHHHHHHHHHhC------CCeEEEEcCC-HHHHHHHHHCCCEe----eCCHHHHHhcCCEEEEEC
Confidence 3345 8999999999999999999999 9998766554 44455666668764 569999999999999999
Q ss_pred CCchH-HHHHH--HHHhcCCCCcEEEEecCchhhhhhhcccCC-CCCccEEEeccCCCChhhHHHHhhcccccCCCceEE
Q 021114 187 SDAAQ-ADNYE--KIFSCMKPNSILGLSHGFLLGHLQSIGLDF-PKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (317)
Q Consensus 187 P~~~~-~~vl~--ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l-~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~i 262 (317)
|+... .+++. ++.+.++++++|++++.......+.....+ ..++.|+. +|...+.. .-..| ...+
T Consensus 96 p~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~-~pv~g~~~---~a~~g-------~l~i 164 (320)
T 4dll_A 96 ENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLD-TPVSGGTV---GAEQG-------TLVI 164 (320)
T ss_dssp SSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE-CCEECHHH---HHHHT-------CEEE
T ss_pred CCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEe-CCCcCCHh---HHhcC-------CeeE
Confidence 97654 45776 788899999999998876432111100011 23567776 36332221 11222 3343
Q ss_pred EEeccCCCHHHHHHHHHHHHHc
Q 021114 263 FAVHQDVDGRATNVALGWSVAL 284 (317)
Q Consensus 263 itp~~d~~~ea~e~a~~l~~al 284 (317)
+ +.. ++++.+.++.+++.+
T Consensus 165 ~-~gg--~~~~~~~~~~ll~~~ 183 (320)
T 4dll_A 165 M-AGG--KPADFERSLPLLKVF 183 (320)
T ss_dssp E-EES--CHHHHHHHHHHHHHH
T ss_pred E-eCC--CHHHHHHHHHHHHhc
Confidence 3 333 378999999999999
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.4e-12 Score=120.15 Aligned_cols=153 Identities=17% Similarity=0.144 Sum_probs=101.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|+|||+|.||.++|++|.+. |++|+++++. .+..+...+.|+.. ..+++++++++|+|++++|....
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~Dvvi~~vp~~~~ 69 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKH------GYPLIIYDVF-PDACKEFQDAGEQV----VSSPADVAEKADRIITMLPTSIN 69 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHT------TCCEEEECSS-THHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEeccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 5799999999999999999998 9988766554 34455555667763 46888999999999999987654
Q ss_pred -HHHHHH---HHhcCCCCcEEEEecCchhhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 192 -ADNYEK---IFSCMKPNSILGLSHGFLLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 192 -~~vl~e---i~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
.+++.+ +.+.++++++|++++|+.....+.....++ ....++ .+|...+. ..... |... +.+.
T Consensus 70 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~-~~p~~~g~---~~a~~-------~~~~-~~~~ 137 (296)
T 2gf2_A 70 AIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM-DAPVSGGV---GAARS-------GNLT-FMVG 137 (296)
T ss_dssp HHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE-ECCEESHH---HHHHH-------TCEE-EEEE
T ss_pred HHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE-EcCCCCCh---hHHhc-------CcEE-EEeC
Confidence 457764 556789999999988876533221000111 123333 23422221 12222 3334 3333
Q ss_pred cCCCHHHHHHHHHHHHHcCCCcE
Q 021114 267 QDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 267 ~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
. +++..+.++.+++.+|...+
T Consensus 138 ~--~~~~~~~v~~l~~~~g~~~~ 158 (296)
T 2gf2_A 138 G--VEDEFAAAQELLGCMGSNVV 158 (296)
T ss_dssp S--CGGGHHHHHHHHTTTEEEEE
T ss_pred C--CHHHHHHHHHHHHHHcCCeE
Confidence 3 47888999999999996543
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-11 Score=129.80 Aligned_cols=155 Identities=10% Similarity=0.062 Sum_probs=112.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceec---------CCCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE---------NGTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~---------~~~~~ 170 (317)
+++|+|||+|.||.++|..+... |++|++++++. +..+.+ .+.|...+ -....
T Consensus 314 i~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~-~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 386 (715)
T 1wdk_A 314 VKQAAVLGAGIMGGGIAYQSASK------GTPILMKDINE-HGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTL 386 (715)
T ss_dssp CSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSSH-HHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEES
T ss_pred CCEEEEECCChhhHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEEC
Confidence 58899999999999999999999 99987766553 333332 23442100 00123
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++ +.+++||+||+++|.+... .++.++.++++++++|+ .++++.+..+.+ .+...-+|++.||..|...
T Consensus 387 d~-~~~~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~~~~~ig~hf~~P~~~---- 458 (715)
T 1wdk_A 387 SY-GDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHM---- 458 (715)
T ss_dssp SS-TTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTT----
T ss_pred CH-HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHHH---HhcCccceEEEEccCCccc----
Confidence 55 6789999999999988743 47889999999999987 466776666554 3333357999999777543
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ ....+.+..+++++.++.+..+++.+|...+.
T Consensus 459 ---~-------~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~ 491 (715)
T 1wdk_A 459 ---M-------PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 491 (715)
T ss_dssp ---C-------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ---C-------ceEEEEECCCCCHHHHHHHHHHHHHhCCEeEE
Confidence 1 34556778888999999999999999965443
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-12 Score=122.63 Aligned_cols=163 Identities=15% Similarity=0.189 Sum_probs=110.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec---C-------CCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---N-------GTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~-------~~~~~~~e~v~~ADv 181 (317)
++|+|||.|+||.++|..|.+. |++|.++.+. ++..+...+.|.... + ....+++++++++|+
T Consensus 30 mkI~VIGaG~mG~alA~~La~~------G~~V~l~~r~-~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDv 102 (356)
T 3k96_A 30 HPIAILGAGSWGTALALVLARK------GQKVRLWSYE-SDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTD 102 (356)
T ss_dssp SCEEEECCSHHHHHHHHHHHTT------TCCEEEECSC-HHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCE
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCE
Confidence 7899999999999999999999 9998877665 333444444332100 0 013588899999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEE-ecCchhh------hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLG------HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEI 254 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l~------~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~ 254 (317)
||+++|.+...++++++.++++++++|+. +.|+... .+.+ .+|...-.+...|+..... .
T Consensus 103 VilaVp~~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~---~l~~~~~~vlsgP~~a~ev----~------ 169 (356)
T 3k96_A 103 ILIVVPSFAFHEVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVAT---ELGQVPMAVISGPSLATEV----A------ 169 (356)
T ss_dssp EEECCCHHHHHHHHHHHGGGCCTTCEEEECCCSCBTTTBCHHHHHHH---HHCSCCEEEEESSCCHHHH----H------
T ss_pred EEECCCHHHHHHHHHHHHHhcCCCCEEEEEeCCCCcCccCHHHHHHH---HcCCCCEEEEECccHHHHH----H------
Confidence 99999999888899999999999998774 5677542 2332 2343223466778653221 1
Q ss_pred cCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCchhhhhccchhh
Q 021114 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYKSDIFGE 305 (317)
Q Consensus 255 ~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~e~~~dl~~e 305 (317)
+|.+..++... .+.+..+.+++++...|+...+ ..|+.|.
T Consensus 170 --~g~pt~~via~-~~~~~~~~v~~lf~~~~~rv~~--------~~Di~g~ 209 (356)
T 3k96_A 170 --ANLPTAVSLAS-NNSQFSKDLIERLHGQRFRVYK--------NDDMIGV 209 (356)
T ss_dssp --TTCCEEEEEEE-SCHHHHHHHHHHHCCSSEEEEE--------ESCHHHH
T ss_pred --cCCCeEEEEec-CCHHHHHHHHHHhCCCCeeEEE--------eCCHHHH
Confidence 23455444443 3467888888998877754444 4666653
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=127.56 Aligned_cols=147 Identities=14% Similarity=0.153 Sum_probs=104.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCc---CCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~---ADvVIL 184 (317)
++|||||+|+||.++|++|.+. |++|.+++|+.++ .+...+. |+.. ..+++|++++ +|+||+
T Consensus 16 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~~r~~~~-~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil 84 (480)
T 2zyd_A 16 QQIGVVGMAVMGRNLALNIESR------GYTVSIFNRSREK-TEEVIAENPGKKLVP----YYTVKEFVESLETPRRILL 84 (480)
T ss_dssp BSEEEECCSHHHHHHHHHHHTT------TCCEEEECSSHHH-HHHHHHHSTTSCEEE----CSSHHHHHHTBCSSCEEEE
T ss_pred CeEEEEccHHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHhhCCCCCeEE----eCCHHHHHhCCCCCCEEEE
Confidence 7899999999999999999999 9998777765433 3333332 6664 5688898877 999999
Q ss_pred ccCCc-hHHHHHHHHHhcCCCCcEEEEecCch-h--hhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDA-AQADNYEKIFSCMKPNSILGLSHGFL-L--GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~-~~~~vl~ei~~~lk~gaiVi~~~Gv~-l--~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++|+. ...++++++.+.+++|++|++++... . ..+.+ .++ .++.|+. +|...+... ... |.
T Consensus 85 ~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~---~l~~~g~~~v~-~pv~gg~~~---a~~-------g~ 150 (480)
T 2zyd_A 85 MVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNR---ELSAEGFNFIG-TGVSGGEEG---ALK-------GP 150 (480)
T ss_dssp CSCSSSHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEE-EEEESHHHH---HHH-------CC
T ss_pred ECCCHHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHCCCCeeC-CccccCHhH---Hhc-------CC
Confidence 99995 56779999999999999999776432 1 22222 111 2567774 475333321 122 34
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. +.+.. ++++.+.++.+++.+|..
T Consensus 151 -~-i~~gg--~~~~~~~v~~ll~~~g~~ 174 (480)
T 2zyd_A 151 -S-IMPGG--QKEAYELVAPILTKIAAV 174 (480)
T ss_dssp -E-EEEES--CHHHHHHHHHHHHHHSCB
T ss_pred -e-EEecC--CHHHHHHHHHHHHHHhcc
Confidence 3 34444 378999999999999975
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-12 Score=121.76 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=100.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC--------------ceecCCCcCCHHhhcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETIS 177 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~~~~~~~~~e~v~ 177 (317)
++|+|||+|+||.++|.+|.+. |++|.++++. .+..+...+.| +.. ..+++++++
T Consensus 16 ~kI~iIG~G~mG~~la~~L~~~------G~~V~~~~r~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 84 (366)
T 1evy_A 16 NKAVVFGSGAFGTALAMVLSKK------CREVCVWHMN-EEEVRLVNEKRENVLFLKGVQLASNITF----TSDVEKAYN 84 (366)
T ss_dssp EEEEEECCSHHHHHHHHHHTTT------EEEEEEECSC-HHHHHHHHHHTBCTTTSTTCBCCTTEEE----ESCHHHHHT
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHcCcccccccccccccceee----eCCHHHHHc
Confidence 3899999999999999999998 9988776655 33344443332 221 357888899
Q ss_pred cCCEEEEccCCchHHHHHHH----HHhcCCC-CcEEEEec-Cchhhhh---hh-cccCCCCCccEEEeccCCCChhhHHH
Q 021114 178 GSDLVLLLISDAAQADNYEK----IFSCMKP-NSILGLSH-GFLLGHL---QS-IGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~e----i~~~lk~-gaiVi~~~-Gv~l~~~---~~-~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++|+||+++|++...+++.+ +.+.+++ +++|+++. |+..... .+ ....++.....+..+|+.+...
T Consensus 85 ~aDvVilav~~~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~---- 160 (366)
T 1evy_A 85 GAEIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEV---- 160 (366)
T ss_dssp TCSSEEECCCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHH----
T ss_pred CCCEEEECCChHHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHH----
Confidence 99999999999877889988 9888988 88888665 7643211 11 0012232223567888764321
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL 284 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~al 284 (317)
+ .|....+... ..+++..+.++.++...
T Consensus 161 ~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~ 188 (366)
T 1evy_A 161 A--------TGVFTCVSIA-SADINVARRLQRIMSTG 188 (366)
T ss_dssp H--------TTCCEEEEEE-CSSHHHHHHHHHHHSCT
T ss_pred H--------hCCceEEEEe-cCCHHHHHHHHHHhcCC
Confidence 1 2344433333 33578889999999988
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-11 Score=116.66 Aligned_cols=152 Identities=9% Similarity=0.011 Sum_probs=103.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCcc----cHHHHHHCC--------------ceecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAAG--------------FTEEN 166 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-------~~Vivg~r~~~~----s~~~A~~~G--------------~~~~~ 166 (317)
++|+|||+|+||.++|..|.+. | ++|.++++..+. ..+...+.+ +..
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~------g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-- 80 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGN------AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVA-- 80 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEE--
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEE--
Confidence 7999999999999999999998 8 788777665430 233333211 121
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe-cCchh---------hhhhhcccCCCCCccEEEec
Q 021114 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS-HGFLL---------GHLQSIGLDFPKNIGVIAVC 236 (317)
Q Consensus 167 ~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~-~Gv~l---------~~~~~~~~~l~~~i~vV~vh 236 (317)
..+++++++++|+||+++|++...++++++.+.++++++|+++ .|+.. ..+.. .++ ....++.+
T Consensus 81 --~~~~~~~~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~---~~~-~~~~v~~g 154 (354)
T 1x0v_A 81 --VPDVVQAAEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGE---RLG-IPMSVLMG 154 (354)
T ss_dssp --ESSHHHHHTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHH---HHT-CCEEEEEC
T ss_pred --EcCHHHHHcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHH---HcC-CCEEEEEC
Confidence 3578888999999999999988888999999999999988754 46642 11121 123 12457788
Q ss_pred cCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 237 Pn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
|+.+... + +|.+..++.. ..+++..+.+..++...|.....
T Consensus 155 p~~a~~v----~--------~g~~~~~~~~-~~~~~~~~~v~~ll~~~g~~~~~ 195 (354)
T 1x0v_A 155 ANIASEV----A--------DEKFCETTIG-CKDPAQGQLLKELMQTPNFRITV 195 (354)
T ss_dssp SCCHHHH----H--------TTCCEEEEEE-CSSHHHHHHHHHHHCBTTEEEEE
T ss_pred CCcHHHH----H--------hcCCceEEEE-ECCHHHHHHHHHHhCCCCEEEEE
Confidence 9775322 2 2344434443 34578888999999988864333
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.31 E-value=9.1e-12 Score=119.45 Aligned_cols=152 Identities=11% Similarity=0.001 Sum_probs=103.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-------ceEEEEecCCc----ccHHHHHHC--------------CceecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGS----RSFAEARAA--------------GFTEEN 166 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-------~~Vivg~r~~~----~s~~~A~~~--------------G~~~~~ 166 (317)
++|+|||.|+||.++|..|.+. | ++|+++++..+ +..+...+. ++..
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~------G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~-- 93 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTN------AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVA-- 93 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHH------HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEE--
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEE--
Confidence 6899999999999999999988 8 88887776543 023332221 1221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHh----cCCCCcEEEEec-Cchhh---------hhhhcccCCCCCccE
Q 021114 167 GTLGDIYETISGSDLVLLLISDAAQADNYEKIFS----CMKPNSILGLSH-GFLLG---------HLQSIGLDFPKNIGV 232 (317)
Q Consensus 167 ~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~----~lk~gaiVi~~~-Gv~l~---------~~~~~~~~l~~~i~v 232 (317)
..+++++++++|+||+++|++...++++++.+ .++++++|+++. |+... .+.+ .++. ...
T Consensus 94 --~~~~~ea~~~aDvVilav~~~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~---~~~~-~~~ 167 (375)
T 1yj8_A 94 --HSDLASVINDADLLIFIVPCQYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISD---FLNI-PCS 167 (375)
T ss_dssp --ESSTHHHHTTCSEEEECCCHHHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHH---HSSS-CEE
T ss_pred --ECCHHHHHcCCCEEEEcCCHHHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHH---HcCC-CEE
Confidence 35778889999999999999888889999998 899999888654 75431 1121 2232 235
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+..+|+.+... . +|....++... .+++..+.++.+++..|.....
T Consensus 168 v~~gp~~a~~v----~--------~g~~~~~~~~~-~~~~~~~~v~~ll~~~g~~~~~ 212 (375)
T 1yj8_A 168 ALSGANIAMDV----A--------MENFSEATIGG-NDKDSLVIWQRVFDLPYFKINC 212 (375)
T ss_dssp EEECSCCHHHH----H--------TTCCEEEEEEC-SCHHHHHHHHHHHCBTTEEEEE
T ss_pred EEeCCchHHHH----H--------hCCCeEEEEec-CCHHHHHHHHHHhCCCCeEEEE
Confidence 67888774322 1 23444343333 3567888899999988855433
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.9e-12 Score=113.23 Aligned_cols=146 Identities=17% Similarity=0.122 Sum_probs=95.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.++.+ ++|+|||+|+||.++|+.|.+. |++|+++++..+ +++++|+|+++
T Consensus 15 ~~~~~-~~I~iiG~G~mG~~la~~l~~~------g~~V~~~~~~~~-----------------------~~~~aD~vi~a 64 (209)
T 2raf_A 15 LYFQG-MEITIFGKGNMGQAIGHNFEIA------GHEVTYYGSKDQ-----------------------ATTLGEIVIMA 64 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHT------TCEEEEECTTCC-----------------------CSSCCSEEEEC
T ss_pred cccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHH-----------------------HhccCCEEEEc
Confidence 56777 9999999999999999999999 998876654321 45789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe-cCch---------------hhhhhhcccCCCCCccEEE-eccCCCChhhHHHH
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLS-HGFL---------------LGHLQSIGLDFPKNIGVIA-VCPKGMGPSVRRLY 248 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~-~Gv~---------------l~~~~~~~~~l~~~i~vV~-vhPn~pg~~~r~lf 248 (317)
+|+....++++++.+.++ +++|+++ .|+. ...+++ .+| +.+|++ .+|. .++.....-
T Consensus 65 v~~~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~---~l~-~~~vv~~~~~~-~~p~~~~~~ 138 (209)
T 2raf_A 65 VPYPALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQ---QLP-DSQVLKAFNTT-FAATLQSGQ 138 (209)
T ss_dssp SCHHHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHH---HCT-TSEEEECSTTS-CHHHHHHSE
T ss_pred CCcHHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHH---HCC-CCcEEEeeecc-cHhhccccc
Confidence 998777789988888888 8888865 4554 233443 445 467888 5552 222221110
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
+ .|.+...++. .. .++++.+.++++++.+|...+....+
T Consensus 139 --~---~g~~~~~~~~-~g-~~~~~~~~v~~ll~~~G~~~~~~~~i 177 (209)
T 2raf_A 139 --V---NGKEPTTVLV-AG-NDDSAKQRFTRALADSPLEVKDAGKL 177 (209)
T ss_dssp --E---TTTEECEEEE-EE-SCHHHHHHHHHHTTTSSCEEEEEESG
T ss_pred --c---CCCCCceeEE-cC-CCHHHHHHHHHHHHHcCCceEeCCCH
Confidence 1 1112333222 22 24788999999999999754443333
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=127.77 Aligned_cols=147 Identities=16% Similarity=0.091 Sum_probs=104.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhcCc---CCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETISG---SDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~e~v~~---ADvVI 183 (317)
++|||||+|+||.++|++|.+. |++|.+++|+.+ ..+...+ .|+.. ..+++|++++ +|+||
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~------G~~V~v~dr~~~-~~~~l~~~~~~~~gi~~----~~s~~e~v~~l~~aDvVi 79 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH------GFTVCAYNRTQS-KVDHFLANEAKGKSIIG----ATSIEDFISKLKRPRKVM 79 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSSH-HHHHHHHTTTTTSSEEC----CSSHHHHHHTSCSSCEEE
T ss_pred CCEEEEeeHHHHHHHHHHHHHC------CCEEEEEeCCHH-HHHHHHcccccCCCeEE----eCCHHHHHhcCCCCCEEE
Confidence 6899999999999999999999 999877776644 3444544 46663 5688898876 99999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCC
Q 021114 184 LLISDA-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (317)
Q Consensus 184 LavP~~-~~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G 258 (317)
+++|+. ...++++++.+.+++|++|++++.... ..+.+ .+. .++.|+. +|...+.+ .... |
T Consensus 80 l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~---~l~~~g~~~v~-~pVsgg~~---~a~~-------G 145 (497)
T 2p4q_A 80 LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYE---ELKKKGILFVG-SGVSGGEE---GARY-------G 145 (497)
T ss_dssp ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEE-EEEESHHH---HHHH-------C
T ss_pred EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHH---HHHHcCCceeC-CCcccChh---Hhhc-------C
Confidence 999996 556799999999999999998765432 22222 111 3567774 46222222 1122 3
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. . +.+.. ++++.+.++.+++.+|..
T Consensus 146 ~-~-im~gg--~~e~~~~v~~ll~~~g~~ 170 (497)
T 2p4q_A 146 P-S-LMPGG--SEEAWPHIKNIFQSISAK 170 (497)
T ss_dssp C-E-EEEEE--CGGGHHHHHHHHHHHSCE
T ss_pred C-e-EEecC--CHHHHHHHHHHHHHhcCc
Confidence 4 3 33444 368899999999999965
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.29 E-value=5.5e-11 Score=118.20 Aligned_cols=154 Identities=14% Similarity=0.126 Sum_probs=109.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceec-------CCCcCCH
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-------NGTLGDI 172 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-------~~~~~~~ 172 (317)
+++|+|||+|.||.++|..|... |++|++.+++ ++..+.+.+ .|.... .....++
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~------G~~V~l~D~~-~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~ 109 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST 109 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH
Confidence 48999999999999999999999 9998766554 333333322 121000 0012355
Q ss_pred HhhcCcCCEEEEccCCchH--HHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHh
Q 021114 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~--~~vl~ei~~~lk~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~ 249 (317)
+.+++||+||+++|.+.. .+++.++.+.++++++|+. +++..+..+.. .+....+|++.||..|...
T Consensus 110 -~~~~~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~~~~~la~---~~~~~~~~ig~hf~~P~~~------ 179 (463)
T 1zcj_A 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHV------ 179 (463)
T ss_dssp -GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTTT------
T ss_pred -HHHCCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCcCHHHHHH---HhcCCcceEEeecCCCccc------
Confidence 578999999999998754 3588889999999999875 44555555543 3333457999999766433
Q ss_pred hcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 250 ~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+....+.+....+++.++.+..+++.+|...+
T Consensus 180 --------~~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v 211 (463)
T 1zcj_A 180 --------MRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV 211 (463)
T ss_dssp --------CCEEEEEECSSCCHHHHHHHHHHHHHTTCEEE
T ss_pred --------ceeEEEeCCCCCCHHHHHHHHHHHHHhCCEEE
Confidence 13455777878899999999999999996444
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=113.48 Aligned_cols=150 Identities=17% Similarity=0.249 Sum_probs=102.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|.||..+++.|.+. |++|.++++ +.+..+...+.|+.. ..+++++++++|+|++++|...+
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~-~~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~v~~~~~ 74 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDR-NPEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 74 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred ceEEEECchHHHHHHHHHHHhC------CCEEEEEeC-CHHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 5899999999999999999998 998765554 444455556668764 56888999999999999996654
Q ss_pred -HHHH---HHHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 -ADNY---EKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 -~~vl---~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..++ +++.+.+++|++|++++... ...+.+ .++ .++.++.. |...... ....+ +. .++
T Consensus 75 ~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-pv~~~~~---~~~~~------~~-~~~ 140 (299)
T 1vpd_A 75 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD---ALKAKGVEMLDA-PVSGGEP---KAIDG------TL-SVM 140 (299)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHTTTCEEEEC-CEESHHH---HHHHT------CE-EEE
T ss_pred HHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEEe-cCCCCHh---HHhcC------CE-EEE
Confidence 4577 57888899999998765442 223332 222 25667654 5332222 11122 23 333
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+. . +++..+.++.+++.+|...+
T Consensus 141 ~~-~--~~~~~~~~~~ll~~~g~~~~ 163 (299)
T 1vpd_A 141 VG-G--DKAIFDKYYDLMKAMAGSVV 163 (299)
T ss_dssp EE-S--CHHHHHHHHHHHHTTEEEEE
T ss_pred eC-C--CHHHHHHHHHHHHHHcCCeE
Confidence 33 2 57889999999999996433
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=113.37 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=101.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|.||.++|+.|.+. |++|++++ + .+..+...+.|+.. ..+++++++++|+|++++|...+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~-~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 71 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARA------GHQLHVTT-I-GPVADELLSLGAVN----VETARQVTEFADIIFIMVPDTPQ 71 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHT------TCEEEECC-S-SCCCHHHHTTTCBC----CSSHHHHHHTCSEEEECCSSHHH
T ss_pred CEEEEEccCHHHHHHHHHHHhC------CCEEEEEc-C-HHHHHHHHHcCCcc----cCCHHHHHhcCCEEEEECCCHHH
Confidence 7999999999999999999998 99886655 3 44444555557653 46888999999999999998875
Q ss_pred -HHHHH---HHHhcCCCCcEEEEecCch---hhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 -ADNYE---KIFSCMKPNSILGLSHGFL---LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 -~~vl~---ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..++. ++.+.++++++|++.+... ...+.+ .++ .++.++. .|...+. ..... |...++
T Consensus 72 ~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~---~~a~~-------g~~~~~ 137 (295)
T 1yb4_A 72 VEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQ---RVNEMGADYLD-APVSGGE---IGARE-------GTLSIM 137 (295)
T ss_dssp HHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEE-CCEESHH---HHHHH-------TCEEEE
T ss_pred HHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCH---HHHHc-------CCeEEE
Confidence 45776 7788899999998765442 223322 222 2455553 3533221 12222 343434
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCc
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~ 288 (317)
+.. +++..+.++.+++.+|...
T Consensus 138 ~~~---~~~~~~~~~~ll~~~g~~~ 159 (295)
T 1yb4_A 138 VGG---EQKVFDRVKPLFDILGKNI 159 (295)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEE
T ss_pred ECC---CHHHHHHHHHHHHHhcCCE
Confidence 433 5788999999999999643
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-11 Score=122.43 Aligned_cols=153 Identities=16% Similarity=0.051 Sum_probs=104.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhcC---cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETIS---GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~v~---~ADvVILavP 187 (317)
++|||||+|.||.++|++|.+. |++|++++++. +..+...+.+..... ....+++|+++ ++|+|++++|
T Consensus 5 ~kIgiIGlG~MG~~lA~~L~~~------G~~V~v~dr~~-~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp 77 (484)
T 4gwg_A 5 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTV-SKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVK 77 (484)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSST-HHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSC
T ss_pred CEEEEEChhHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecC
Confidence 7899999999999999999999 99987776654 344455444321000 01358888876 5999999999
Q ss_pred Cch-HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 188 DAA-QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 188 ~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+.. ..++++++.++|++|++|+|++.... ..+.. .....++.|+.. |.. +.. ..-+.| . + |
T Consensus 78 ~~~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~--~l~~~Gi~fvd~-pVs-Gg~--~gA~~G-------~-~-i 142 (484)
T 4gwg_A 78 AGQAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCR--DLKAKGILFVGS-GVS-GGE--EGARYG-------P-S-L 142 (484)
T ss_dssp SSHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEEE-EEE-SHH--HHHHHC-------C-E-E
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHH--HHHhhccccccC-Ccc-CCH--HHHhcC-------C-e-e
Confidence 974 45689999999999999999886532 11111 111246788874 622 222 111233 3 4 4
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCc
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~ 288 (317)
.+..+ +++.+.++.+++.+|.+.
T Consensus 143 m~GG~--~ea~~~v~pll~~ig~~v 165 (484)
T 4gwg_A 143 MPGGN--KEAWPHIKTIFQGIAAKV 165 (484)
T ss_dssp EEEEC--GGGHHHHHHHHHHHSCBC
T ss_pred ecCCC--HHHHHHHHHHHHHhcCcc
Confidence 45554 689999999999999643
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=99.26 E-value=3.5e-11 Score=110.95 Aligned_cols=150 Identities=16% Similarity=0.112 Sum_probs=103.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|.||.+++++|.+. |++|+++++. .+..+...+.|+.. ..+++++++++|+|++++|...+
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~~~-~~~~~~~~~~g~~~----~~~~~~~~~~~D~vi~~vp~~~~ 73 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKE------GVTVYAFDLM-EANVAAVVAQGAQA----CENNQKVAAASDIIFTSLPNAGI 73 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHTTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCeEEEEeCC-HHHHHHHHHCCCee----cCCHHHHHhCCCEEEEECCCHHH
Confidence 7899999999999999999998 9988765544 44444555557764 56888999999999999987665
Q ss_pred -HHHHH---HHHhcCCCCcEEEEec-Cc--hhhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 -ADNYE---KIFSCMKPNSILGLSH-GF--LLGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 -~~vl~---ei~~~lk~gaiVi~~~-Gv--~l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..++. ++.+.++++++|++.+ |. ....+.+ .++ .++.++. +|...+.. .... |...++
T Consensus 74 ~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~---~~~~~g~~~~~-~p~~~~~~---~a~~-------g~~~~~ 139 (301)
T 3cky_A 74 VETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK---VAAEKGIDYVD-APVSGGTK---GAEA-------GTLTIM 139 (301)
T ss_dssp HHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHH---HHHHTTCEEEE-CCEESHHH---HHHH-------TCEEEE
T ss_pred HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEEE-ccCCCCHH---HHHc-------CCeEEE
Confidence 45775 7888899999988755 43 2233332 222 2466664 46443321 2222 343444
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. +++..+.++.+++.+|...+
T Consensus 140 ~~g---~~~~~~~v~~ll~~~g~~~~ 162 (301)
T 3cky_A 140 VGA---SEAVFEKIQPVLSVIGKDIY 162 (301)
T ss_dssp EES---CHHHHHHHHHHHHHHEEEEE
T ss_pred ECC---CHHHHHHHHHHHHHhcCCEE
Confidence 433 57889999999999996543
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=108.80 Aligned_cols=155 Identities=17% Similarity=0.144 Sum_probs=99.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
++|+|||+|.||.++++.|.+. |++|++.+|+ .+..+...+.|+.. .+.+++++++|+|++++|++..
T Consensus 29 ~~I~iiG~G~~G~~la~~l~~~------g~~V~~~~r~-~~~~~~~~~~g~~~-----~~~~~~~~~~DvVi~av~~~~~ 96 (215)
T 2vns_A 29 PKVGILGSGDFARSLATRLVGS------GFKVVVGSRN-PKRTARLFPSAAQV-----TFQEEAVSSPEVIFVAVFREHY 96 (215)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESS-HHHHHHHSBTTSEE-----EEHHHHTTSCSEEEECSCGGGS
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCce-----ecHHHHHhCCCEEEECCChHHH
Confidence 7899999999999999999998 9888766554 33334443446653 3788899999999999998765
Q ss_pred HHHHHHHHhcCCCCcEEEEe-cCchhhhhh-------hcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 192 ADNYEKIFSCMKPNSILGLS-HGFLLGHLQ-------SIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~-~Gv~l~~~~-------~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
.++++ +.+.+ ++++|+++ .|.....+. .....++ +.++++.+ |+..... +..+-. . |...++
T Consensus 97 ~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~-~~~vv~~~-n~~~~~~---~~~~~~-~--g~~~~~ 166 (215)
T 2vns_A 97 SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFP-TCTVVKAF-NVISAWT---LQAGPR-D--GNRQVP 166 (215)
T ss_dssp GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCT-TSEEEEEC-TTBCHHH---HHTCSC-S--SCCEEE
T ss_pred HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCC-CCeEEecc-ccccHhH---hccccc-C--CceeEE
Confidence 55664 44555 78888865 455443221 0001344 35788877 4433221 111211 1 222223
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
... .++++.+.++++++.+|...+.
T Consensus 167 ~~g--~~~~~~~~v~~ll~~~G~~~~~ 191 (215)
T 2vns_A 167 ICG--DQPEAKRAVSEMALAMGFMPVD 191 (215)
T ss_dssp EEE--SCHHHHHHHHHHHHHTTCEEEE
T ss_pred Eec--CCHHHHHHHHHHHHHcCCceEe
Confidence 333 2578999999999999975443
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-11 Score=115.64 Aligned_cols=145 Identities=13% Similarity=0.055 Sum_probs=95.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-----------ceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----------FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-----------~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||+|+||.++|.+|.+. |++|.+++|..+ ..+...+.| +.. ..++++ ++++|
T Consensus 15 ~kI~iIG~G~mG~ala~~L~~~------G~~V~~~~r~~~-~~~~l~~~g~~~~~~~~~~~~~~----~~~~~~-~~~aD 82 (335)
T 1z82_A 15 MRFFVLGAGSWGTVFAQMLHEN------GEEVILWARRKE-IVDLINVSHTSPYVEESKITVRA----TNDLEE-IKKED 82 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHH-HHHHHHHHSCBTTBTTCCCCSEE----ESCGGG-CCTTE
T ss_pred CcEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHhCCcccCCCCeeeEEE----eCCHHH-hcCCC
Confidence 8999999999999999999999 999887776533 333334444 222 357778 89999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec-Cchhhhhh---hc-ccCCCCCccEEEeccCCCChhhHHHHhhccccc
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLGHLQ---SI-GLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEIN 255 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~-Gv~l~~~~---~~-~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~ 255 (317)
+||+++|++...++++++.+ ++++|+++. |+.....+ +. ...++ ....++.+|+.+... +
T Consensus 83 vVil~vk~~~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~~~-------~---- 147 (335)
T 1z82_A 83 ILVIAIPVQYIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAEEV-------A---- 147 (335)
T ss_dssp EEEECSCGGGHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHHHH-------H----
T ss_pred EEEEECCHHHHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHHHH-------h----
Confidence 99999999777778876655 788877655 76432111 00 00223 234678999885443 1
Q ss_pred CCCceEEEEeccCCCHHHHHHHHHHHHHcCCCc
Q 021114 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPF 288 (317)
Q Consensus 256 g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~ 288 (317)
.|....++...+ + .+.++.+++..|...
T Consensus 148 -~g~~~~~~~g~~-~---~~~~~~ll~~~g~~~ 175 (335)
T 1z82_A 148 -KKLPTAVTLAGE-N---SKELQKRISTEYFRV 175 (335)
T ss_dssp -TTCCEEEEEEET-T---HHHHHHHHCCSSEEE
T ss_pred -CCCceEEEEEeh-h---HHHHHHHhCCCCEEE
Confidence 234332333322 1 567788888887543
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.6e-11 Score=114.48 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=101.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC-ch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD-AA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~-~~ 190 (317)
++|+|||+|.||.++|+.|.+. |++|+++++.. +..+...+.|+.. ..+.+++++++|+||+++|. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~------g~~V~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~DvVi~av~~~~~ 99 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKM------GHTVTVWNRTA-EKCDLFIQEGARL----GRTPAEVVSTCDITFACVSDPKA 99 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEECSSG-GGGHHHHHTTCEE----CSCHHHHHHHCSEEEECCSSHHH
T ss_pred CeEEEEcccHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHHcCCEE----cCCHHHHHhcCCEEEEeCCCHHH
Confidence 7899999999999999999998 99887666553 4445555677764 45888999999999999994 55
Q ss_pred HHHHHHH---HHhcCCCCcEEEEecCchh---hhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 191 QADNYEK---IFSCMKPNSILGLSHGFLL---GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 191 ~~~vl~e---i~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..+++.+ +++.++++++|++++.... ..+.+ .++ .+..|+.. |.. +... .... |...++
T Consensus 100 ~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~~~~~v~~-p~~-g~~~--~~~~-------g~~~~~ 165 (316)
T 2uyy_A 100 AKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQ---VIVSRGGRFLEA-PVS-GNQQ--LSND-------GMLVIL 165 (316)
T ss_dssp HHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEEEC-CEE-SCHH--HHHH-------TCEEEE
T ss_pred HHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEc-Ccc-CChh--HHhh-------CCEEEE
Confidence 5567764 4578899999998776532 22222 221 24567754 421 1111 1112 344434
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
+.. +++..+.+..+++.+|...+
T Consensus 166 ~~g---~~~~~~~v~~ll~~~g~~~~ 188 (316)
T 2uyy_A 166 AAG---DRGLYEDCSSCFQAMGKTSF 188 (316)
T ss_dssp EEE---CHHHHHHTHHHHHHHEEEEE
T ss_pred eCC---CHHHHHHHHHHHHHhcCCEE
Confidence 333 36888999999999995443
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.4e-11 Score=119.09 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=103.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-C---CceecCCCcCCHHhhcCc---CCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A---GFTEENGTLGDIYETISG---SDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~---G~~~~~~~~~~~~e~v~~---ADvVIL 184 (317)
++|||||+|.||.++|++|.+. |++|.++++..+ ..+...+ . |+.. ..+++|++++ +|+||+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~------G~~V~v~dr~~~-~~~~l~~~~~~~gi~~----~~s~~e~v~~l~~aDvVil 74 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESR------GYTVAIYNRTTS-KTEEVFKEHQDKNLVF----TKTLEEFVGSLEKPRRIML 74 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHH-HHHHHHHHTTTSCEEE----CSSHHHHHHTBCSSCEEEE
T ss_pred CcEEEEeeHHHHHHHHHHHHhC------CCEEEEEcCCHH-HHHHHHHhCcCCCeEE----eCCHHHHHhhccCCCEEEE
Confidence 6899999999999999999999 998877766533 3333333 2 6653 5688888876 999999
Q ss_pred ccCCc-hHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCc
Q 021114 185 LISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (317)
Q Consensus 185 avP~~-~~~~vl~ei~~~lk~gaiVi~~~-Gv~--l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~ 259 (317)
++|+. ...++++++.+.+++|++|++++ |.. ...+.+ .++ .++.|+. +|...+... ... |.
T Consensus 75 avp~~~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~---~l~~~g~~~v~-~pv~gg~~~---a~~-------g~ 140 (474)
T 2iz1_A 75 MVQAGAATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNA---ELADSGINFIG-TGVSGGEKG---ALL-------GP 140 (474)
T ss_dssp CCCTTHHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHH---HTTTSSCEEEE-EEECSHHHH---HHH-------CC
T ss_pred EccCchHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHCCCeEEC-CCCCCChhh---hcc-------CC
Confidence 99996 45678899999999999999776 432 223332 232 3567774 575433221 122 34
Q ss_pred eEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 260 ~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.++ +.. +++..+.++.+++.+|..
T Consensus 141 -~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (474)
T 2iz1_A 141 -SMM-PGG--QKEAYDLVAPIFEQIAAK 164 (474)
T ss_dssp -CEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -eEE-ecC--CHHHHHHHHHHHHHHhcc
Confidence 323 444 478999999999999975
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.22 E-value=5e-11 Score=108.06 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=70.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+|+|||+|+||.++|++|.+. |++|+++++. .++..+...+.|+. .+++++++++|+||+++|++.
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~------g~~V~~~~~~~~~~~~~~~~~~g~~------~~~~~~~~~aDvvi~~v~~~~ 68 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CeEEEEechHHHHHHHHHHHHC------CCeEEEeCCccCHHHHHHHHHCCCc------CCHHHHHhcCCEEEEECCCHH
Confidence 5899999999999999999998 9988764331 33334444455664 267788999999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
..+.+.++.+.+++ +|+++++..
T Consensus 69 ~~~~~~~~~~~~~~--~vi~~s~~~ 91 (264)
T 1i36_A 69 ALGAARRAGRHVRG--IYVDINNIS 91 (264)
T ss_dssp HHHHHHHHHTTCCS--EEEECSCCC
T ss_pred HHHHHHHHHHhcCc--EEEEccCCC
Confidence 87767788888877 778877764
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.7e-10 Score=120.79 Aligned_cols=155 Identities=12% Similarity=0.057 Sum_probs=108.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-----------HCCceecC---------CCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEEN---------GTLG 170 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~~---------~~~~ 170 (317)
+++|+|||.|.||.++|..+.+. |++|++++++. +..+.+. +.|..... ....
T Consensus 312 ~~kV~VIGaG~MG~~iA~~la~a------G~~V~l~D~~~-~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~ 384 (725)
T 2wtb_A 312 IKKVAIIGGGLMGSGIATALILS------NYPVILKEVNE-KFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSL 384 (725)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTT------TCCEEEECSSH-HHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEES
T ss_pred CcEEEEEcCCHhhHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeC
Confidence 47899999999999999999999 99987766553 3333321 12321000 0123
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
++ +.+++||+||+++|.+... .++.++.++++++++|+ .++++.+..+.+ .+...-+|++.|+--|...
T Consensus 385 d~-~~~~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~i~~la~---~~~~p~~~iG~hf~~P~~~---- 456 (725)
T 2wtb_A 385 DY-ESFRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGE---RTKSQDRIVGAHFFSPAHI---- 456 (725)
T ss_dssp SS-GGGTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHTT---TCSCTTTEEEEEECSSTTT----
T ss_pred CH-HHHCCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---HhcCCCCEEEecCCCCccc----
Confidence 55 5789999999999988753 47889999999999986 466766665543 2222347999998655432
Q ss_pred HhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+ ....+.+...++++.++.+..+++.+|...+.
T Consensus 457 ---~-------~lvevv~g~~t~~e~~~~~~~l~~~lGk~~v~ 489 (725)
T 2wtb_A 457 ---M-------PLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVV 489 (725)
T ss_dssp ---C-------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ---C-------ceEEEEECCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 1 34556777788999999999999999965443
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=112.62 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=103.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHH-CCceecC--CC-------cCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARA-AGFTEEN--GT-------LGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~-~G~~~~~--~~-------~~~~~e~v~~AD 180 (317)
|+|+|||+|+||.++|..|.+... ..-| ++|+++.| ++..+...+ .|+...+ +. ..+..+.++++|
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~-~~~g~~~V~~~~r--~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D 85 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAA-ATDGLLEVSWIAR--GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVD 85 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHH-HTTSSEEEEEECC--HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCcc-ccCCCCCEEEEEc--HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCC
Confidence 689999999999999999976400 0004 67777665 344555555 6775421 00 013345678999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEE-ecCchh-hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc-cccCC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK-EINGA 257 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l-~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~-e~~g~ 257 (317)
+||+++|+....++++++.+.++++++|++ ..|+.. ..+.+ .+++. .+++.+|+.+..... .|. +..+.
T Consensus 86 ~vil~vk~~~~~~v~~~i~~~l~~~~~iv~~~nG~~~~~~l~~---~l~~~-~v~~g~~~~~a~~~~----pg~~~~~~~ 157 (317)
T 2qyt_A 86 YILFCTKDYDMERGVAEIRPMIGQNTKILPLLNGADIAERMRT---YLPDT-VVWKGCVYISARKSA----PGLITLEAD 157 (317)
T ss_dssp EEEECCSSSCHHHHHHHHGGGEEEEEEEEECSCSSSHHHHHTT---TSCTT-TBCEEEEEEEEEEEE----TTEEEEEEE
T ss_pred EEEEecCcccHHHHHHHHHhhcCCCCEEEEccCCCCcHHHHHH---HCCCC-cEEEEEEEEEEEEcC----CCEEEEcCC
Confidence 999999999998899999999988887774 567754 34443 45543 566666654332210 000 00123
Q ss_pred CceEEEEec-cCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 258 GINSSFAVH-QDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 258 G~~~iitp~-~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
|...++... ...+.+.. .+..++...|.....
T Consensus 158 g~~~~ig~~~~~~~~~~~-~~~~ll~~~g~~~~~ 190 (317)
T 2qyt_A 158 RELFYFGSGLPEQTDDEV-RLAELLTAAGIRAYN 190 (317)
T ss_dssp EEEEEEECCSSSCCHHHH-HHHHHHHHTTCCEEC
T ss_pred CceEEEcCCCCCCcCHHH-HHHHHHHHCCCCCEE
Confidence 333334443 33445666 788999999965444
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=122.91 Aligned_cols=147 Identities=17% Similarity=0.081 Sum_probs=102.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----CCceecCCCcCCHHhhc---CcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEENGTLGDIYETI---SGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----~G~~~~~~~~~~~~e~v---~~ADvVI 183 (317)
++|||||+|.||.++|++|.+. |++|.+++|..+ ..+...+ .|+.. ..+++|++ +++|+||
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~------G~~V~v~dr~~~-~~~~l~~~~~~g~gi~~----~~~~~e~v~~l~~aDvVi 71 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVS-KVDDFLANEAKGTKVLG----AHSLEEMVSKLKKPRRII 71 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHHTTTTTSSCEE----CSSHHHHHHHBCSSCEEE
T ss_pred CeEEEEChHHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHhccccCCCeEE----eCCHHHHHhhccCCCEEE
Confidence 6899999999999999999999 999877766543 3444444 56653 46888887 4899999
Q ss_pred EccCCc-hHHHHHHHHHhcCCCCcEEEEec-Cchh--hhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCC
Q 021114 184 LLISDA-AQADNYEKIFSCMKPNSILGLSH-GFLL--GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAG 258 (317)
Q Consensus 184 LavP~~-~~~~vl~ei~~~lk~gaiVi~~~-Gv~l--~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G 258 (317)
+++|+. ...++++++.+.+++|++|++++ |... ..+.+ .++ .++.|+ .+|...+.. .... |
T Consensus 72 laVp~~~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~---~l~~~g~~~v-~~pv~g~~~---~a~~-------g 137 (482)
T 2pgd_A 72 LLVKAGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR---DLKDKGILFV-GSGVSGGED---GARY-------G 137 (482)
T ss_dssp ECSCTTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH---HHHHTTCEEE-EEEEESHHH---HHHH-------C
T ss_pred EeCCChHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH---HHHHcCCeEe-CCCCCCChh---hhcc-------C
Confidence 999997 55678899999999999999775 4321 12222 111 356777 457533222 1122 3
Q ss_pred ceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 259 INSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 259 ~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. . +.+..+ +++.+.++.+++.+|..
T Consensus 138 ~-~-i~~gg~--~e~~~~v~~ll~~~g~~ 162 (482)
T 2pgd_A 138 P-S-LMPGGN--KEAWPHIKAIFQGIAAK 162 (482)
T ss_dssp C-E-EEEEEC--TTTHHHHHHHHHHHSCB
T ss_pred C-e-EEeCCC--HHHHHHHHHHHHHhhhh
Confidence 4 3 234433 57889999999999975
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=3.2e-11 Score=110.22 Aligned_cols=146 Identities=13% Similarity=0.085 Sum_probs=99.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|++|+|||+|.||.++|+.|.+ |++|+++++.. +..+...+.|+.. .. ++++++++|+|++++|...
T Consensus 1 M~~i~iiG~G~~G~~~a~~l~~-------g~~V~~~~~~~-~~~~~~~~~g~~~----~~-~~~~~~~~D~vi~~v~~~~ 67 (289)
T 2cvz_A 1 MEKVAFIGLGAMGYPMAGHLAR-------RFPTLVWNRTF-EKALRHQEEFGSE----AV-PLERVAEARVIFTCLPTTR 67 (289)
T ss_dssp -CCEEEECCSTTHHHHHHHHHT-------TSCEEEECSST-HHHHHHHHHHCCE----EC-CGGGGGGCSEEEECCSSHH
T ss_pred CCeEEEEcccHHHHHHHHHHhC-------CCeEEEEeCCH-HHHHHHHHCCCcc----cC-HHHHHhCCCEEEEeCCChH
Confidence 4789999999999999999863 56776665553 3344444446553 23 6788899999999999886
Q ss_pred -HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEe
Q 021114 191 -QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (317)
Q Consensus 191 -~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp 265 (317)
..++++++.+.++++++|++++.... ..+.+ .++ .++.++.. |..+++. .... |...+++.
T Consensus 68 ~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~---~~~~~g~~~~~~-p~~~~~~---~~~~-------g~~~~~~~ 133 (289)
T 2cvz_A 68 EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAE---RLREKGVTYLDA-PVSGGTS---GAEA-------GTLTVMLG 133 (289)
T ss_dssp HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH---HHHTTTEEEEEC-CEESHHH---HHHH-------TCEEEEEE
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHH---HHHHcCCEEEEe-cCCCChh---HHhh-------CCeEEEEC
Confidence 55688889899999999988765432 22322 222 25677775 7544332 2223 34444443
Q ss_pred ccCCCHHHHHHHHHHHHHcCCC
Q 021114 266 HQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 266 ~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. +++..+.++.++ .+|..
T Consensus 134 -~--~~~~~~~~~~ll-~~g~~ 151 (289)
T 2cvz_A 134 -G--PEEAVERVRPFL-AYAKK 151 (289)
T ss_dssp -S--CHHHHHHHGGGC-TTEEE
T ss_pred -C--CHHHHHHHHHHH-hhcCC
Confidence 2 578889999999 99864
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=109.03 Aligned_cols=155 Identities=19% Similarity=0.136 Sum_probs=105.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC--C--------CcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~--~--------~~~~~~e~v~~ADv 181 (317)
++|+|||.|+||.++|..|.+. |++|.++.|.. .+...+.|+.... + ...+.+ .++.+|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~ 72 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRS------GEDVHFLLRRD---YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDL 72 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHT------SCCEEEECSTT---HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEEcCc---HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCE
Confidence 6899999999999999999999 99888777653 3555667764311 0 013444 4689999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEec------cCCCChhhHHHHhhccc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVC------PKGMGPSVRRLYVQGKE 253 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vh------Pn~pg~~~r~lf~~G~e 253 (317)
||+++|.....++++++.++++++++|+ ...|+. ...+.+ .+|++ ++++.+ -.+|+... .
T Consensus 73 vilavk~~~~~~~l~~l~~~l~~~~~iv~l~nGi~~~~~l~~---~~~~~-~v~~~~~~~~a~~~~p~~v~-----~--- 140 (312)
T 3hn2_A 73 VLVGLKTFANSRYEELIRPLVEEGTQILTLQNGLGNEEALAT---LFGAE-RIIGGVAFLCSNRGEPGEVH-----H--- 140 (312)
T ss_dssp EEECCCGGGGGGHHHHHGGGCCTTCEEEECCSSSSHHHHHHH---HTCGG-GEEEEEEEEECCBCSSSEEE-----E---
T ss_pred EEEecCCCCcHHHHHHHHhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEEEEeeeEEcCCcEEE-----E---
Confidence 9999999999999999999999988765 678885 445554 45543 455433 23444431 1
Q ss_pred ccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 254 ~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.|.|.. .|......+.+..+.+.+++...|....+
T Consensus 141 -~~~g~~-~ig~~~~~~~~~~~~l~~~l~~~g~~~~~ 175 (312)
T 3hn2_A 141 -LGAGRI-ILGEFLPRDTGRIEELAAMFRQAGVDCRT 175 (312)
T ss_dssp -CEEEEE-EEEESSCCCSHHHHHHHHHHHHTTCCEEE
T ss_pred -CCCCeE-EEecCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 123333 35554444456777888899998866555
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.1e-11 Score=118.94 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=101.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-------ceecCCCcCCHHhhcCc---CCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------FTEENGTLGDIYETISG---SDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-------~~~~~~~~~~~~e~v~~---ADv 181 (317)
|+|||||+|.||.++|++|.+. |++|.+++|..++..+...+.| +.. ..+++|++++ +|+
T Consensus 2 MkIgVIG~G~mG~~lA~~La~~------G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~----~~~~~e~v~~l~~aDv 71 (478)
T 1pgj_A 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTYSKSEEFMKANASAPFAGNLKA----FETMEAFAASLKKPRK 71 (478)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHTTTSTTGGGEEE----CSCHHHHHHHBCSSCE
T ss_pred CEEEEEChHHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEE----ECCHHHHHhcccCCCE
Confidence 5799999999999999999999 9998777665433222233335 432 4688888774 999
Q ss_pred EEEccCCc-hHHHHHHHHHhcCCCCcEEEEec-Cch--hhhhhhcccCCC-CCccEEEeccCCCChhhHHHHhhcccccC
Q 021114 182 VLLLISDA-AQADNYEKIFSCMKPNSILGLSH-GFL--LGHLQSIGLDFP-KNIGVIAVCPKGMGPSVRRLYVQGKEING 256 (317)
Q Consensus 182 VILavP~~-~~~~vl~ei~~~lk~gaiVi~~~-Gv~--l~~~~~~~~~l~-~~i~vV~vhPn~pg~~~r~lf~~G~e~~g 256 (317)
||+++|+. ...++++++.+.+++|++|++.+ |.. ...+.+ .++ .++.++. +|...+.. ....
T Consensus 72 VilaVp~~~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~---~l~~~g~~~v~-~pv~gg~~---~a~~------ 138 (478)
T 1pgj_A 72 ALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ---QLEAAGLRFLG-MGISGGEE---GARK------ 138 (478)
T ss_dssp EEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH---HHHTTTCEEEE-EEEESHHH---HHHH------
T ss_pred EEEecCChHHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHH---HHHHCCCeEEE-eeccCCHH---HHhc------
Confidence 99999996 55678899999999999998765 432 122222 122 3566764 46433322 1222
Q ss_pred CCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 257 ~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
|. .++ +.. ++++.+.++.+++.+|..
T Consensus 139 -g~-~i~-~gg--~~~~~~~v~~ll~~~g~~ 164 (478)
T 1pgj_A 139 -GP-AFF-PGG--TLSVWEEIRPIVEAAAAK 164 (478)
T ss_dssp -CC-EEE-EEE--CHHHHHHHHHHHHHHSCB
T ss_pred -CC-eEe-ccC--CHHHHHHHHHHHHHhccc
Confidence 34 333 443 478899999999999975
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.6e-12 Score=115.79 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=87.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEE-EEecCCcccHHHH-HHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEA-RAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|+||.+++++|.+. ++|+ +++++ .+..+.. .+.|. . ..+++++++++|+||+++|++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-------~~v~~v~~~~-~~~~~~~~~~~g~-~----~~~~~~~~~~~DvVilav~~~ 69 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-------YEIGYILSRS-IDRARNLAEVYGG-K----AATLEKHPELNGVVFVIVPDR 69 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----------CCCEECSS-HHHHHHHHHHTCC-C----CCSSCCCCC---CEEECSCTT
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-------CcEEEEEeCC-HHHHHHHHHHcCC-c----cCCHHHHHhcCCEEEEeCChH
Confidence 6899999999999999998653 3453 44444 3333333 34455 2 457778889999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEec-CchhhhhhhcccCCCCCccEEEecc-----CCCChhhHHHHhhcccccCCCceEEE
Q 021114 190 AQADNYEKIFSCMKPNSILGLSH-GFLLGHLQSIGLDFPKNIGVIAVCP-----KGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~-Gv~l~~~~~~~~~l~~~i~vV~vhP-----n~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
...+++.++. +++++|++++ +.....++. . .+...|| ++|... +.+ .+.++.+
T Consensus 70 ~~~~v~~~l~---~~~~ivi~~s~~~~~~~l~~---~-----~~~~~~p~~~~~g~~~~~--~~~--------~~~~~~~ 128 (276)
T 2i76_A 70 YIKTVANHLN---LGDAVLVHCSGFLSSEIFKK---S-----GRASIHPNFSFSSLEKAL--EMK--------DQIVFGL 128 (276)
T ss_dssp THHHHHTTTC---CSSCCEEECCSSSCGGGGCS---S-----SEEEEEECSCC--CTTGG--GCG--------GGCCEEE
T ss_pred HHHHHHHHhc---cCCCEEEECCCCCcHHHHHH---h-----hccccchhhhcCCCchhH--HHh--------CCCeEEE
Confidence 8777776654 6788888776 445544432 1 2333443 333221 111 2355544
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCcEEecCchh
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQ 296 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~~ 296 (317)
+.. ++..+.++.+++.+|. .++....++
T Consensus 129 ~~~----~~~~~~~~~l~~~lG~-~~~~v~~~~ 156 (276)
T 2i76_A 129 EGD----ERGLPIVKKIAEEISG-KYFVIPSEK 156 (276)
T ss_dssp CCC----TTTHHHHHHHHHHHCS-CEEECCGGG
T ss_pred EeC----hHHHHHHHHHHHHhCC-CEEEECHHH
Confidence 432 3568899999999995 455555333
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.19 E-value=7.5e-12 Score=122.23 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=95.4
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+|.| ++|||||+|+||.++|+.|+.+ |++|+++++.. .....|.. ..+++|++++||+|++|
T Consensus 112 ~~l~g-~tvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~-----~~~~~g~~-----~~~l~ell~~aDvV~l~ 174 (380)
T 2o4c_A 112 ADLAE-RTYGVVGAGQVGGRLVEVLRGL------GWKVLVCDPPR-----QAREPDGE-----FVSLERLLAEADVISLH 174 (380)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH-----HHHSTTSC-----CCCHHHHHHHCSEEEEC
T ss_pred cccCC-CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCCh-----hhhccCcc-----cCCHHHHHHhCCEEEEe
Confidence 58999 9999999999999999999999 99986655431 11123432 45899999999999999
Q ss_pred cCCchH----H-HHHH-HHHhcCCCCcEEEEec-Cchh------hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAAQ----A-DNYE-KIFSCMKPNSILGLSH-GFLL------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~~----~-~vl~-ei~~~lk~gaiVi~~~-Gv~l------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+.. + .+++ +.++.||+|++|++++ |-.+ ..+++ +......++|...+|. +.. .++.
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~-g~i~~A~LDV~~~EP~-~~~---~l~~--- 246 (380)
T 2o4c_A 175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG-GADLEVALDVWEGEPQ-ADP---ELAA--- 246 (380)
T ss_dssp CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTS-CCH---HHHT---
T ss_pred ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh-CCCceEEeeeeccCCC-Cch---hhcc---
Confidence 999886 4 4664 7889999999999775 3211 22222 2222334667777884 322 2332
Q ss_pred cccCCCceEEEEecc-CCCHHH
Q 021114 253 EINGAGINSSFAVHQ-DVDGRA 273 (317)
Q Consensus 253 e~~g~G~~~iitp~~-d~~~ea 273 (317)
.+.++|||- ..+.++
T Consensus 247 ------~nvi~TPHiag~t~e~ 262 (380)
T 2o4c_A 247 ------RCLIATPHIAGYSLEG 262 (380)
T ss_dssp ------TCSEECSSCTTCCHHH
T ss_pred ------CCEEEccccCcCCHHH
Confidence 367899986 344444
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.8e-11 Score=119.58 Aligned_cols=150 Identities=17% Similarity=0.144 Sum_probs=102.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+|.| ++|||||+|+||+++|+.|+.+ |++|+++++.. .....+.. ..+++|++++||+|+++
T Consensus 115 ~~l~g-ktvGIIGlG~IG~~vA~~l~a~------G~~V~~~d~~~-----~~~~~~~~-----~~sl~ell~~aDiV~l~ 177 (381)
T 3oet_A 115 FSLRD-RTIGIVGVGNVGSRLQTRLEAL------GIRTLLCDPPR-----AARGDEGD-----FRTLDELVQEADVLTFH 177 (381)
T ss_dssp CCGGG-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECHHH-----HHTTCCSC-----BCCHHHHHHHCSEEEEC
T ss_pred CccCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEECCCh-----HHhccCcc-----cCCHHHHHhhCCEEEEc
Confidence 67899 9999999999999999999999 99987665421 11112222 56899999999999999
Q ss_pred cCCchH----HH-HHH-HHHhcCCCCcEEEEec-Cch------hhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcc
Q 021114 186 ISDAAQ----AD-NYE-KIFSCMKPNSILGLSH-GFL------LGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (317)
Q Consensus 186 vP~~~~----~~-vl~-ei~~~lk~gaiVi~~~-Gv~------l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~ 252 (317)
+|.+.. ++ +++ +.++.||+|++|++++ |-. +..+++ +.......+|...+|.. .. .++..
T Consensus 178 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~-g~i~gA~LDV~e~EP~~-~~---~L~~~-- 250 (381)
T 3oet_A 178 TPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNA-GQPLSVVLDVWEGEPDL-NV---ALLEA-- 250 (381)
T ss_dssp CCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHT-TCCEEEEESCCTTTTSC-CH---HHHHH--
T ss_pred CcCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHh-CCCeEEEeeccccCCCC-cc---hhhhC--
Confidence 998876 54 664 7889999999999776 432 122332 22223356777788853 22 25532
Q ss_pred cccCCCceEEEEecc-CCCHHHHHH-----HHHHHHHcCC
Q 021114 253 EINGAGINSSFAVHQ-DVDGRATNV-----ALGWSVALGS 286 (317)
Q Consensus 253 e~~g~G~~~iitp~~-d~~~ea~e~-----a~~l~~alG~ 286 (317)
+.++|||- ..+.++.+. ++++..-++.
T Consensus 251 -------~~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~ 283 (381)
T 3oet_A 251 -------VDIGTSHIAGYTLEGKARGTTQVFEAYSAFIGR 283 (381)
T ss_dssp -------SSEECSSCTTCCHHHHHHHHHHHHHHHHHHTTC
T ss_pred -------CEEECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 35789986 334555443 3556666664
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=6.2e-11 Score=107.79 Aligned_cols=150 Identities=17% Similarity=0.118 Sum_probs=97.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---Cc--eecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GF--TEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~--~~~~~~~~~~~e~v~~ADvVILav 186 (317)
|+|+|||+|+||.++|..|.+. |++|++++|+.++. +..... |. .. .....+ .+.++++|+||+++
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~------g~~V~~~~r~~~~~-~~l~~~~~~~~~~~~-~~~~~~-~~~~~~~d~vi~~v 71 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPY-CSVNLVETDGSIFNE-SLTAND-PDFLATSDLLLVTL 71 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSE-EEEEEECTTSCEEEE-EEEESC-HHHHHTCSEEEECS
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCccce-eeEEEEcCCCceeee-eeeecC-ccccCCCCEEEEEe
Confidence 5899999999999999999999 99988776654321 111111 11 00 001223 46778999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE-ecCchh-hhhhhcccCCCCCccEEE---------eccCCCChhhHHHHhhccccc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGL-SHGFLL-GHLQSIGLDFPKNIGVIA---------VCPKGMGPSVRRLYVQGKEIN 255 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l-~~~~~~~~~l~~~i~vV~---------vhPn~pg~~~r~lf~~G~e~~ 255 (317)
|+....++++++.+.++++++|++ ..|+.. ..+.+ .+++ ++. ..| .+.. .
T Consensus 72 ~~~~~~~v~~~l~~~l~~~~~vv~~~~g~~~~~~l~~---~~~~---~~~g~~~~~~~~~~p-~~~~------------~ 132 (291)
T 1ks9_A 72 KAWQVSDAVKSLASTLPVTTPILLIHNGMGTIEELQN---IQQP---LLMGTTTHAARRDGN-VIIH------------V 132 (291)
T ss_dssp CGGGHHHHHHHHHTTSCTTSCEEEECSSSCTTGGGTT---CCSC---EEEEEECCEEEEETT-EEEE------------E
T ss_pred cHHhHHHHHHHHHhhCCCCCEEEEecCCCCcHHHHHH---hcCC---eEEEEEeEccEEcCC-EEEE------------e
Confidence 999988899999999999988774 567643 23333 3443 332 333 2111 1
Q ss_pred CCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEe
Q 021114 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFA 291 (317)
Q Consensus 256 g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~ 291 (317)
+.|.. .+++... +.+..+.++.+++.+|......
T Consensus 133 ~~g~~-~i~~~~~-~~~~~~~~~~ll~~~g~~~~~~ 166 (291)
T 1ks9_A 133 ANGIT-HIGPARQ-QDGDYSYLADILQTVLPDVAWH 166 (291)
T ss_dssp ECCCE-EEEESSG-GGTTCTHHHHHHHTTSSCEEEC
T ss_pred cccce-EEccCCC-CcchHHHHHHHHHhcCCCCeec
Confidence 24553 3555332 3566788899999999765543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=103.53 Aligned_cols=155 Identities=12% Similarity=0.134 Sum_probs=116.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-----------HHHHCCceecC----------CCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEEN----------GTL 169 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~~----------~~~ 169 (317)
+.+|+|||.|.||..+|..+... |++|++.+.. ++..+ ...+.|..... ...
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~ 78 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG------GFRVKLYDIE-PRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSC 78 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT------TCCEEEECSC-HHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEE
T ss_pred CCeEEEECCcHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccc
Confidence 37999999999999999999999 9998776644 22222 12223322100 014
Q ss_pred CCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
++++|++++||+|+=++|-+-.. +++.++-+.++++++|. -++++.+..+.+ .....-+|++.||--|.+.++
T Consensus 79 ~~l~~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~---~~~~p~r~ig~HffNP~~~m~- 154 (319)
T 3ado_A 79 TNLAEAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFT---GLAHVKQCIVAHPVNPPYYIP- 154 (319)
T ss_dssp CCHHHHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHT---TCTTGGGEEEEEECSSTTTCC-
T ss_pred cchHhHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhh---hccCCCcEEEecCCCCccccc-
Confidence 57889999999999999987764 49999999999999986 778888877765 334446899999977776631
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcE
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~ 289 (317)
-.=+.+...++++.++.+.++.+.+|.+.+
T Consensus 155 -------------LVEiv~g~~Ts~~~~~~~~~~~~~~gk~pv 184 (319)
T 3ado_A 155 -------------LVELVPHPETSPATVDRTHALMRKIGQSPV 184 (319)
T ss_dssp -------------EEEEEECTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred -------------hHHhcCCCCCcHHHHHHHHHHHHHhCCccC
Confidence 122568889999999999999999996654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.06 E-value=6.4e-10 Score=104.50 Aligned_cols=159 Identities=19% Similarity=0.157 Sum_probs=105.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC---C--------CcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---G--------TLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~--------~~~~~~e~v~~AD 180 (317)
++|+|||.|.||.++|..|.+. |++|.++.|.. .+...+.|+.... + ...+.+++.+.+|
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~------g~~V~~~~r~~---~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~D 73 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT------GHCVSVVSRSD---YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPD 73 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT------TCEEEEECSTT---HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCh---HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCC
Confidence 7999999999999999999999 99988777753 2444555643211 0 1246667766899
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCch-hhhhhhcccCCCCCccEEEecc------CCCChhhHHHHhhcc
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL-LGHLQSIGLDFPKNIGVIAVCP------KGMGPSVRRLYVQGK 252 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~-l~~~~~~~~~l~~~i~vV~vhP------n~pg~~~r~lf~~G~ 252 (317)
+||+++|..+..++++++.++++++++|+ ...|+. ...+++ .+|.+ .++.... ..|+... .+
T Consensus 74 lVilavK~~~~~~~l~~l~~~l~~~t~Iv~~~nGi~~~~~l~~---~~~~~-~vl~g~~~~~a~~~~pg~v~-----~~- 143 (320)
T 3i83_A 74 CTLLCIKVVEGADRVGLLRDAVAPDTGIVLISNGIDIEPEVAA---AFPDN-EVISGLAFIGVTRTAPGEIW-----HQ- 143 (320)
T ss_dssp EEEECCCCCTTCCHHHHHTTSCCTTCEEEEECSSSSCSHHHHH---HSTTS-CEEEEEEEEEEEEEETTEEE-----EE-
T ss_pred EEEEecCCCChHHHHHHHHhhcCCCCEEEEeCCCCChHHHHHH---HCCCC-cEEEEEEEeceEEcCCCEEE-----EC-
Confidence 99999999999899999999999888765 678885 445554 44543 4443221 2223221 11
Q ss_pred cccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecC
Q 021114 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 253 e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT 293 (317)
+.|. ..|......+.+..+.+.+++...|....+...
T Consensus 144 ---~~~~-~~ig~~~~~~~~~~~~l~~~l~~~~~~~~~~~d 180 (320)
T 3i83_A 144 ---AYGR-LMLGNYPGGVSERVKTLAAAFEEAGIDGIATEN 180 (320)
T ss_dssp ---EEEE-EEEEESSSCCCHHHHHHHHHHHHTTSCEEECSC
T ss_pred ---CCCE-EEEecCCCCccHHHHHHHHHHHhCCCCceECHH
Confidence 1222 234443333346677788889988876655333
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-09 Score=103.98 Aligned_cols=159 Identities=13% Similarity=0.140 Sum_probs=100.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (317)
|+|+|||+|.||.++|..|.+. |++|++.+ .+++..+...+ .| +.. ..+
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~------G~~V~~~d-~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~----t~~ 69 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSAR------GHEVIGVD-VSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSG----TTD 69 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEE-CCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEE----eCC
Confidence 5899999999999999999999 99876554 44433333332 23 221 457
Q ss_pred HHhhcCcCCEEEEccCCch----------HHHHHHHHHhcCCC---CcEEEEecCchhhh----h----hhc-ccCCCCC
Q 021114 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKP---NSILGLSHGFLLGH----L----QSI-GLDFPKN 229 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~----------~~~vl~ei~~~lk~---gaiVi~~~Gv~l~~----~----~~~-~~~l~~~ 229 (317)
+++++++||+||+++|... ..++++++.+++++ +++|++.+++.... + ... +.....+
T Consensus 70 ~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~ 149 (436)
T 1mv8_A 70 FKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVD 149 (436)
T ss_dssp HHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTT
T ss_pred HHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCc
Confidence 8888999999999998765 56788899999999 99988776543211 1 110 1111112
Q ss_pred ccEEEeccCC--CChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCc
Q 021114 230 IGVIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTL 294 (317)
Q Consensus 230 i~vV~vhPn~--pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~ 294 (317)
. .+...|.. ++....+++.. ...++.. .++++.+.+.++++.+|.. ++.+++
T Consensus 150 ~-~v~~~Pe~~~~G~~~~~~~~~--------~~iv~G~---~~~~~~~~~~~l~~~~~~~-v~~~~~ 203 (436)
T 1mv8_A 150 F-GVGTNPEFLRESTAIKDYDFP--------PMTVIGE---LDKQTGDLLEEIYRELDAP-IIRKTV 203 (436)
T ss_dssp B-EEEECCCCCCTTSHHHHHHSC--------SCEEEEE---SSHHHHHHHHHHHTTSSSC-EEEEEH
T ss_pred E-EEEECcccccccccchhccCC--------CEEEEEc---CCHHHHHHHHHHHhccCCC-EEcCCH
Confidence 2 34455643 33333222221 1233333 2478889999999999974 443544
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=99.01 E-value=1.7e-10 Score=115.65 Aligned_cols=110 Identities=16% Similarity=0.208 Sum_probs=83.8
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+.++.+. +++| |... +..++.| ++|||||+|.||.++|+.|+.+ |++|++.++. ......+...|+.
T Consensus 236 ~~~~~~~-l~~g-w~r~-~~~~l~G-ktVgIIG~G~IG~~vA~~l~~~------G~~Viv~d~~-~~~~~~a~~~g~~-- 302 (479)
T 1v8b_A 236 VYGCRHS-LPDG-LMRA-TDFLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEID-PICAIQAVMEGFN-- 302 (479)
T ss_dssp HHHHHHH-HHHH-HHHH-HCCCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSC-HHHHHHHHTTTCE--
T ss_pred hHhHHHH-Hhhh-hhhc-cccccCC-CEEEEEeeCHHHHHHHHHHHhC------cCEEEEEeCC-hhhHHHHHHcCCE--
Confidence 5556666 6666 8542 3368999 9999999999999999999999 9998766554 3322345667876
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
..++++++++||+|++++.. ..++. +.++.||+|++|++++-.
T Consensus 303 ---~~~l~ell~~aDiVi~~~~t---~~lI~~~~l~~MK~gailiNvgrg 346 (479)
T 1v8b_A 303 ---VVTLDEIVDKGDFFITCTGN---VDVIKLEHLLKMKNNAVVGNIGHF 346 (479)
T ss_dssp ---ECCHHHHTTTCSEEEECCSS---SSSBCHHHHTTCCTTCEEEECSST
T ss_pred ---ecCHHHHHhcCCEEEECCCh---hhhcCHHHHhhcCCCcEEEEeCCC
Confidence 45899999999999999632 23454 788899999999987644
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=101.50 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=76.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC---------CCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~~~~~~~e~v~~ADvV 182 (317)
++|+|||.|+||.++|..|.+. |++|.++ ++ ++..+...+.|..... ....+.+ .++++|+|
T Consensus 20 ~kI~IiGaGa~G~~~a~~L~~~------G~~V~l~-~~-~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~D~v 90 (318)
T 3hwr_A 20 MKVAIMGAGAVGCYYGGMLARA------GHEVILI-AR-PQHVQAIEATGLRLETQSFDEQVKVSASSDPS-AVQGADLV 90 (318)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEEE-CC-HHHHHHHHHHCEEEECSSCEEEECCEEESCGG-GGTTCSEE
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCeEEEE-Ec-HhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHH-HcCCCCEE
Confidence 8999999999999999999999 9998777 44 3445555555643210 0023444 46899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCchh-hhhhh
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGFLL-GHLQS 221 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv~l-~~~~~ 221 (317)
|+++|.....++++++.++++++++|+ ...|+.. ..+.+
T Consensus 91 ilavk~~~~~~~l~~l~~~l~~~~~iv~~~nGi~~~~~l~~ 131 (318)
T 3hwr_A 91 LFCVKSTDTQSAALAMKPALAKSALVLSLQNGVENADTLRS 131 (318)
T ss_dssp EECCCGGGHHHHHHHHTTTSCTTCEEEEECSSSSHHHHHHH
T ss_pred EEEcccccHHHHHHHHHHhcCCCCEEEEeCCCCCcHHHHHH
Confidence 999999988889999999999998766 7789865 34443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.7e-09 Score=102.23 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=74.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC---------CCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~~~~~~~e~v~~ADvV 182 (317)
+||+|||.|.||.++|..|.+. |++|.++.|. +..+...+.|..... ....+.++ ++++|+|
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~------g~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~V 74 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALA------GEAINVLARG--ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVV 74 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHT------TCCEEEECCH--HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCEEEEEECh--HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEE
Confidence 7999999999999999999999 9988877764 345556667764310 01236665 5899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv 214 (317)
|+++|.....++++++.+.++++++|+ ...|+
T Consensus 75 ilavk~~~~~~~~~~l~~~l~~~~~iv~~~nGi 107 (335)
T 3ghy_A 75 IVAVKAPALESVAAGIAPLIGPGTCVVVAMNGV 107 (335)
T ss_dssp EECCCHHHHHHHHGGGSSSCCTTCEEEECCSSS
T ss_pred EEeCCchhHHHHHHHHHhhCCCCCEEEEECCCC
Confidence 999999888889999999999998876 56785
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.6e-10 Score=114.75 Aligned_cols=110 Identities=19% Similarity=0.156 Sum_probs=81.7
Q ss_pred cccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec
Q 021114 86 LANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (317)
+.+..+. +++| |... ...++.| ++|||||+|.||.++|+.|+.+ |++|++.++. ......+...|+.
T Consensus 256 ~~~~~~~-l~~g-w~~~-~g~~L~G-ktVgIIG~G~IG~~vA~~l~~~------G~~V~v~d~~-~~~~~~a~~~G~~-- 322 (494)
T 3d64_A 256 LYGCRES-LVDG-IKRA-TDVMIAG-KIAVVAGYGDVGKGCAQSLRGL------GATVWVTEID-PICALQAAMEGYR-- 322 (494)
T ss_dssp HHHHHTT-HHHH-HHHH-HCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSC-HHHHHHHHTTTCE--
T ss_pred hHhhhhh-hhhh-hhhc-cccccCC-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCC-hHhHHHHHHcCCE--
Confidence 3344555 4455 7432 3368999 9999999999999999999998 9998766554 3222245556776
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
..+++|++++||+|++++.. ..++. +.++.||+|++|++++..
T Consensus 323 ---~~~l~ell~~aDiVi~~~~t---~~lI~~~~l~~MK~gAilINvgrg 366 (494)
T 3d64_A 323 ---VVTMEYAADKADIFVTATGN---YHVINHDHMKAMRHNAIVCNIGHF 366 (494)
T ss_dssp ---ECCHHHHTTTCSEEEECSSS---SCSBCHHHHHHCCTTEEEEECSSS
T ss_pred ---eCCHHHHHhcCCEEEECCCc---ccccCHHHHhhCCCCcEEEEcCCC
Confidence 35899999999999999832 23453 788899999999987643
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=100.08 Aligned_cols=95 Identities=20% Similarity=0.221 Sum_probs=73.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecC----------CCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEEN----------GTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~----------~~~~~~~e~v~~AD 180 (317)
++|+|||+|.||..+|..|.+. |++|++.++. ++..+...+. |....+ ....+++++++++|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~------g~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 77 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCC
Confidence 7999999999999999999998 9988766554 3334444443 331100 01457888899999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+||+++|.....++++++.+.++++++|++..|
T Consensus 78 ~vi~~v~~~~~~~~~~~l~~~l~~~~~vv~~~~ 110 (359)
T 1bg6_A 78 VILIVVPAIHHASIAANIASYISEGQLIILNPG 110 (359)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred EEEEeCCchHHHHHHHHHHHhCCCCCEEEEcCC
Confidence 999999999998899999999999998887766
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.7e-09 Score=105.90 Aligned_cols=161 Identities=14% Similarity=0.097 Sum_probs=101.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (317)
|+|+|||+|.||.++|..|.+. |++|+++++. ++..+...+ .| +.. ..+
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~------G~~V~~~D~~-~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~----t~d 71 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAEL------GANVRCIDTD-RNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF----GTE 71 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE----ESC
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CCEEEEEECC-HHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE----ECC
Confidence 7999999999999999999999 9998755544 433333322 12 221 468
Q ss_pred HHhhcCcCCEEEEccCCc----------hHHHHHHHHHhcCCCCcEEEEecCchhh---h----hhhcccCCCCCcc-EE
Q 021114 172 IYETISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSHGFLLG---H----LQSIGLDFPKNIG-VI 233 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~----------~~~~vl~ei~~~lk~gaiVi~~~Gv~l~---~----~~~~~~~l~~~i~-vV 233 (317)
+++++++||+||+++|.. ...++++++.++++++++|++.+++... . +++.+.....+.+ .+
T Consensus 72 ~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v 151 (450)
T 3gg2_A 72 IEQAVPEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDI 151 (450)
T ss_dssp HHHHGGGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHhcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeE
Confidence 889999999999999977 5667889999999999999988765321 1 1111111111122 35
Q ss_pred EeccCCCCh--hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC--cEEecCc
Q 021114 234 AVCPKGMGP--SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP--FTFATTL 294 (317)
Q Consensus 234 ~vhPn~pg~--~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~--~~~~tT~ 294 (317)
...|..... ...+... .+.++.-.. ++++.+.++.+++.++.. .+..+++
T Consensus 152 ~~~Pe~a~eG~~~~~~~~---------p~~ivvG~~--~~~~~~~~~~l~~~~~~~~~~~~~~d~ 205 (450)
T 3gg2_A 152 ASNPEFLKEGNAIDDFMK---------PDRVVVGVD--SDRARELITSLYKPMLLNNFRVLFMDI 205 (450)
T ss_dssp EECCCCCCTTSHHHHHHS---------CSCEEEEES--SHHHHHHHHHHHTTTCCSCCCEEEECH
T ss_pred EechhhhcccchhhhccC---------CCEEEEEcC--CHHHHHHHHHHHHHHhcCCCeEEecCH
Confidence 566754322 2111111 122222222 368899999999998862 3444443
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-09 Score=105.69 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=100.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH---------------HH----CCceecCCCcCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---------------RA----AGFTEENGTLGD 171 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---------------~~----~G~~~~~~~~~~ 171 (317)
+|+|+|||+|.||.++|..|.+. |.|++|+++++. ++..+.. .+ .++.. ..+
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~----g~G~~V~~~d~~-~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~----t~~ 75 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHM----CPEIRVTVVDVN-ESRINAWNSPTLPIYEPGLKEVVESCRGKNLFF----STN 75 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHH----CTTSEEEEECSC-HHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESC
T ss_pred ccEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEECC-HHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEE----ECC
Confidence 47999999999999999999876 224777655443 3333221 11 23332 357
Q ss_pred HHhhcCcCCEEEEccCCch---------------HHHHHHHHHhcCCCCcEEEEecCchhh---hhhhcc-cCCCCCcc-
Q 021114 172 IYETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIG-LDFPKNIG- 231 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~---------------~~~vl~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~-~~l~~~i~- 231 (317)
+++++++||+||+++|... ..++++++.++++++++|++.+.+... .+.... ......++
T Consensus 76 ~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~ 155 (467)
T 2q3e_A 76 IDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNL 155 (467)
T ss_dssp HHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEE
T ss_pred HHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCe
Confidence 8889999999999998544 235667888999999999887654321 111100 01111233
Q ss_pred EEEeccCC--CChhhHHHHhhcccccCCCceEEEEe-ccCCCHHHHHHHHHHHHHc-CCCcEEecCch
Q 021114 232 VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAV-HQDVDGRATNVALGWSVAL-GSPFTFATTLE 295 (317)
Q Consensus 232 vV~vhPn~--pg~~~r~lf~~G~e~~g~G~~~iitp-~~d~~~ea~e~a~~l~~al-G~~~~~~tT~~ 295 (317)
.|...|.. ++....+++.. ...++.. ....+++..+.++.+++.+ |...+..++..
T Consensus 156 ~V~~~Pe~~~~G~~~~d~~~~--------~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~ 215 (467)
T 2q3e_A 156 QVLSNPEFLAEGTAIKDLKNP--------DRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTW 215 (467)
T ss_dssp EEEECCCCCCTTSHHHHHHSC--------SCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHH
T ss_pred EEEeCHHHhhcccchhhccCC--------CEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHH
Confidence 34556643 33333333322 1232332 2113578899999999999 65555555543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-09 Score=99.12 Aligned_cols=94 Identities=17% Similarity=0.249 Sum_probs=72.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+++| ++|+|||+|.||.++|+.|+.. |++|+++++.. +..+.+.+.|+... ...+++++++++|+|+++
T Consensus 151 ~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~~ 220 (293)
T 3d4o_A 151 FTIHG-ANVAVLGLGRVGMSVARKFAAL------GAKVKVGARES-DLLARIAEMGMEPF--HISKAAQELRDVDVCINT 220 (293)
T ss_dssp SCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTSEEE--EGGGHHHHTTTCSEEEEC
T ss_pred CCCCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECCH-HHHHHHHHCCCeec--ChhhHHHHhcCCCEEEEC
Confidence 57899 9999999999999999999999 99887766653 33344456675420 124788899999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+.... ++.++.||+++++++++
T Consensus 221 ~p~~~i~---~~~l~~mk~~~~lin~a 244 (293)
T 3d4o_A 221 IPALVVT---ANVLAEMPSHTFVIDLA 244 (293)
T ss_dssp CSSCCBC---HHHHHHSCTTCEEEECS
T ss_pred CChHHhC---HHHHHhcCCCCEEEEec
Confidence 9985332 24567899999999876
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=100.48 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=73.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..+++| ++|+|||+|.||.++|+.|+.+ |++|++.++.. +..+.+.+.|+... ...+++++++++|+|++
T Consensus 152 ~~~l~g-~~v~IiG~G~iG~~~a~~l~~~------G~~V~~~d~~~-~~~~~~~~~g~~~~--~~~~l~~~l~~aDvVi~ 221 (300)
T 2rir_A 152 DYTIHG-SQVAVLGLGRTGMTIARTFAAL------GANVKVGARSS-AHLARITEMGLVPF--HTDELKEHVKDIDICIN 221 (300)
T ss_dssp SSCSTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSH-HHHHHHHHTTCEEE--EGGGHHHHSTTCSEEEE
T ss_pred CCCCCC-CEEEEEcccHHHHHHHHHHHHC------CCEEEEEECCH-HHHHHHHHCCCeEE--chhhHHHHhhCCCEEEE
Confidence 468999 9999999999999999999999 99887766653 33333445665420 12478899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++|+.... ++.++.||+++++++++
T Consensus 222 ~~p~~~i~---~~~~~~mk~g~~lin~a 246 (300)
T 2rir_A 222 TIPSMILN---QTVLSSMTPKTLILDLA 246 (300)
T ss_dssp CCSSCCBC---HHHHTTSCTTCEEEECS
T ss_pred CCChhhhC---HHHHHhCCCCCEEEEEe
Confidence 99984322 24678899999999876
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=5.4e-09 Score=104.32 Aligned_cols=166 Identities=13% Similarity=0.066 Sum_probs=98.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-------------------CceecCCCcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------GFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------------G~~~~~~~~~~~ 172 (317)
++|+|||+|.||.++|..|.+. |.|++|++++ .+++..+...+. ++.. .+++
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~----g~g~~V~~~D-~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~----t~~~ 80 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHK----CPHITVTVVD-MNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFF----SSDI 80 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH----CTTSEEEEEC-SCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEE----ESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhc----CCCCEEEEEE-CCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEE----ECCH
Confidence 7999999999999999999887 2246776554 434333332221 1111 3467
Q ss_pred HhhcCcCCEEEEccCCch---------------HHHHHHHHHhcCCCCcEEEEecCchh---hhhhhcccC-CC--CCcc
Q 021114 173 YETISGSDLVLLLISDAA---------------QADNYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLD-FP--KNIG 231 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~---------------~~~vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~-l~--~~i~ 231 (317)
.+++++||+||+++|... ..++++++.++++++++|++.+++.. ..+...... .+ ...+
T Consensus 81 ~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d 160 (481)
T 2o3j_A 81 PKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLK 160 (481)
T ss_dssp HHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CC
T ss_pred HHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCc
Confidence 788999999999987542 45577889999999999998765532 111110000 11 1233
Q ss_pred -EEEeccCC--CChhhHHHHhhcccccCCCceEEEEecc-CCCHHHHHHHHHHHHHcCC-CcEEecCc
Q 021114 232 -VIAVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVALGWSVALGS-PFTFATTL 294 (317)
Q Consensus 232 -vV~vhPn~--pg~~~r~lf~~G~e~~g~G~~~iitp~~-d~~~ea~e~a~~l~~alG~-~~~~~tT~ 294 (317)
.|..+|.. ++....+++.. ...++.... ..++++.+.++.+++.+|. ..+..+++
T Consensus 161 ~~v~~~Pe~~~~G~a~~~~~~~--------~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~ 220 (481)
T 2o3j_A 161 FQVLSNPEFLAEGTAMKDLANP--------DRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNT 220 (481)
T ss_dssp EEEEECCCCCCTTCHHHHHHSC--------SCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEH
T ss_pred eEEEeCcccccccchhhcccCC--------CEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCH
Confidence 36778853 33333333321 123332322 1123678889999999995 44444443
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=101.60 Aligned_cols=94 Identities=16% Similarity=0.099 Sum_probs=73.0
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-------C-------------ceecCCCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------G-------------FTEENGTL 169 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------G-------------~~~~~~~~ 169 (317)
|-|||+|||+|.||.++|..|.+. |++|+++++ +++..+...+. | +. ..
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~~------G~~V~~~d~-~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~----~t 75 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLADI------GHDVFCLDV-DQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLR----FS 75 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE----EE
T ss_pred CCceEEEECcCHHHHHHHHHHHhC------CCEEEEEEC-CHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEE----EE
Confidence 448999999999999999999999 999765544 34334433332 1 11 13
Q ss_pred CCHHhhcCcCCEEEEccCC----------chHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 170 GDIYETISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~----------~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.++++++++||+||+++|. +...++++++.++++++++|++.+++
T Consensus 76 td~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv 130 (478)
T 2y0c_A 76 TDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV 130 (478)
T ss_dssp CCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred CCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence 5777889999999999997 56677889999999999999887775
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=100.74 Aligned_cols=151 Identities=16% Similarity=0.153 Sum_probs=96.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------------------CC-ceecCCCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------------------AG-FTEENGTLGD 171 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------------------~G-~~~~~~~~~~ 171 (317)
-+|+|||+|.||.++|..|.+. |++|+++++.. +..+...+ .| +.. .++
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~------G~~V~~~D~~~-~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~----ttd 77 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDF------GHEVVCVDKDA-RKIELLHQNVMPIYEPGLDALVASNVKAGRLSF----TTD 77 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCS-TTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEE----ESC
T ss_pred eEEEEEcCCHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHhcCCCCccCCCHHHHHHhhcccCCEEE----ECC
Confidence 6899999999999999999999 99987666553 33333222 12 221 468
Q ss_pred HHhhcCcCCEEEEccCCch-----------HHHHHHHHHhcCCCCcEEEEecCchhh-------hhhhcccCCCCCccEE
Q 021114 172 IYETISGSDLVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSIGLDFPKNIGVI 233 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~-----------~~~vl~ei~~~lk~gaiVi~~~Gv~l~-------~~~~~~~~l~~~i~vV 233 (317)
+++++++||+||+++|... ..++++++.+++++|++|++.+++... .+.+ ..+..--.|
T Consensus 78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e---~~~~~d~~v 154 (446)
T 4a7p_A 78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAE---VAPNSGAKV 154 (446)
T ss_dssp HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH---HSTTSCCEE
T ss_pred HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH---hCCCCCceE
Confidence 8899999999999976542 556888999999999999988876321 1222 111111245
Q ss_pred EeccCCCChh--hHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 234 AVCPKGMGPS--VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 234 ~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
...|...... +.+ |.. .+.++ ... .++++.+.++.+++.++..
T Consensus 155 ~~~Pe~a~eG~a~~d-~~~--------p~~iv-vG~-~~~~~~~~~~~ly~~~~~~ 199 (446)
T 4a7p_A 155 VSNPEFLREGAAIED-FKR--------PDRVV-VGT-EDEFARQVMREIYRPLSLN 199 (446)
T ss_dssp EECCCCCCTTSHHHH-HHS--------CSCEE-EEC-SCHHHHHHHHHHHCSCC--
T ss_pred EeCcccccccchhhh-ccC--------CCEEE-EeC-CcHHHHHHHHHHHHHHhcC
Confidence 6667443221 111 111 22322 222 2367888899999888753
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-09 Score=102.87 Aligned_cols=92 Identities=16% Similarity=0.183 Sum_probs=73.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
-..|.| ++|+|||+|.||.++|+.|+.+ |++|++.++ +......+...|+. ..+++|++++||+|++
T Consensus 206 g~~L~G-ktVgIiG~G~IG~~vA~~Lka~------Ga~Viv~D~-~p~~a~~A~~~G~~-----~~sL~eal~~ADVVil 272 (436)
T 3h9u_A 206 DVMIAG-KTACVCGYGDVGKGCAAALRGF------GARVVVTEV-DPINALQAAMEGYQ-----VLLVEDVVEEAHIFVT 272 (436)
T ss_dssp CCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECS-CHHHHHHHHHTTCE-----ECCHHHHTTTCSEEEE
T ss_pred CCcccC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEECC-ChhhhHHHHHhCCe-----ecCHHHHHhhCCEEEE
Confidence 367889 9999999999999999999999 999766554 34334456678886 4599999999999998
Q ss_pred ccCCchHHHHHH-HHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~-ei~~~lk~gaiVi~~~ 212 (317)
+..... +++ +.++.||+|++|+.++
T Consensus 273 t~gt~~---iI~~e~l~~MK~gAIVINvg 298 (436)
T 3h9u_A 273 TTGNDD---IITSEHFPRMRDDAIVCNIG 298 (436)
T ss_dssp CSSCSC---SBCTTTGGGCCTTEEEEECS
T ss_pred CCCCcC---ccCHHHHhhcCCCcEEEEeC
Confidence 665332 344 6788999999999765
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.8e-08 Score=93.69 Aligned_cols=94 Identities=13% Similarity=0.060 Sum_probs=66.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee-c------------C-CCcCCHHhhcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE-E------------N-GTLGDIYETIS 177 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~-~------------~-~~~~~~~e~v~ 177 (317)
|+|+|||+|.||.++|..|.+ |++|++.+ .+++..+...+.+... + . ....+++++++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-------G~~V~~~d-~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~ 72 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-------QNEVTIVD-ILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYK 72 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEC-SCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHhC-------CCEEEEEE-CCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhc
Confidence 589999999999999999863 67776554 4444444443333210 0 0 01346778899
Q ss_pred cCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 178 GSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 178 ~ADvVILavP~~-----------~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|+||+++|.. ...++++++.+ ++++++|++.+.+
T Consensus 73 ~aDvviiavpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~ 119 (402)
T 1dlj_A 73 EAELVIIATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKSTI 119 (402)
T ss_dssp HCSEEEECCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSCC
T ss_pred CCCEEEEecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCC
Confidence 999999999987 35668888988 9999999874443
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-08 Score=100.27 Aligned_cols=96 Identities=11% Similarity=0.093 Sum_probs=69.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC------------------CceecCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA------------------GFTEENG 167 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~------------------G~~~~~~ 167 (317)
++..- |+|+|||+|.||.++|..|. . |++|++++ .+++..+...+. ++..
T Consensus 32 r~~~~-mkIaVIGlG~mG~~lA~~La-~------G~~V~~~D-~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~--- 99 (432)
T 3pid_A 32 RGSEF-MKITISGTGYVGLSNGVLIA-Q------NHEVVALD-IVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRA--- 99 (432)
T ss_dssp ---CC-CEEEEECCSHHHHHHHHHHH-T------TSEEEEEC-SCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEE---
T ss_pred cccCC-CEEEEECcCHHHHHHHHHHH-c------CCeEEEEe-cCHHHhhHHhccCCccccccHHHHHhhccCCeEE---
Confidence 34444 89999999999999999875 4 88876554 444433333221 2322
Q ss_pred CcCCHHhhcCcCCEEEEccCCc-----------hHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 168 TLGDIYETISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 168 ~~~~~~e~v~~ADvVILavP~~-----------~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
..++++++++||+||+++|.. ...++++++.+ +++|++|++.+.+.
T Consensus 100 -ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~ 156 (432)
T 3pid_A 100 -TTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIP 156 (432)
T ss_dssp -ESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCC
T ss_pred -EcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence 468889999999999999986 23457778889 99999999888764
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.2e-09 Score=98.20 Aligned_cols=94 Identities=14% Similarity=0.099 Sum_probs=70.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++| ++|+|||.|.||.++++.|.+. |++|.+++|+.++..+.+.+.|+.. ..+++++++++|+||+++
T Consensus 126 ~~~~-~~v~iiGaG~~g~aia~~L~~~------g~~V~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~aDiVi~at 194 (275)
T 2hk9_A 126 EVKE-KSILVLGAGGASRAVIYALVKE------GAKVFLWNRTKEKAIKLAQKFPLEV----VNSPEEVIDKVQVIVNTT 194 (275)
T ss_dssp TGGG-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSSHHHHHHHTTTSCEEE----CSCGGGTGGGCSEEEECS
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHcCCee----ehhHHhhhcCCCEEEEeC
Confidence 6789 9999999999999999999998 8887777665433333333445542 337888899999999999
Q ss_pred CCchHHH---HHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQAD---NYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~---vl~ei~~~lk~gaiVi~~~G 213 (317)
|+....+ .+. .+.++++++|+|+..
T Consensus 195 p~~~~~~~~~~i~--~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 195 SVGLKDEDPEIFN--YDLIKKDHVVVDIIY 222 (275)
T ss_dssp STTSSTTCCCSSC--GGGCCTTSEEEESSS
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEcCC
Confidence 9886432 221 356889999998776
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=1.3e-08 Score=98.05 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=70.0
Q ss_pred CEEEEEeccchHHHHHHHHHh-hhhhhcCCceEEEEec--CCcccHHHHHH-CCcee----cCC-----------CcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR--KGSRSFAEARA-AGFTE----ENG-----------TLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r--~~~~s~~~A~~-~G~~~----~~~-----------~~~~~ 172 (317)
|+|+|||.|.||.++|..|.+ . |++|.++.+ ++++..+.+.+ .|... .++ ...++
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~------G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRD------GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDP 76 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTST------TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCH
T ss_pred ceEEEECCCHHHHHHHHHHHhCC------CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCH
Confidence 799999999999999999976 7 888877661 22233343222 23100 000 23578
Q ss_pred HhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+++++++|+||+++|.....++++++.++++++++|+..
T Consensus 77 ~~a~~~aD~Vilav~~~~~~~v~~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 77 EIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGL 115 (404)
T ss_dssp HHHHTTCSEEEECSCGGGHHHHHHHHTTTCCTTCEEEET
T ss_pred HHHhCCCCEEEEeCchHHHHHHHHHHHhhCCCCcEEEEc
Confidence 888999999999999999989999999999999988764
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=101.92 Aligned_cols=93 Identities=25% Similarity=0.281 Sum_probs=74.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| ++++|||+|.||..+|+.++.+ |++|++.++. +.....+...|+. ..+++|++++||+|+++
T Consensus 243 ~~L~G-KTVgVIG~G~IGr~vA~~lraf------Ga~Viv~d~d-p~~a~~A~~~G~~-----vv~LeElL~~ADIVv~a 309 (464)
T 3n58_A 243 VMMAG-KVAVVCGYGDVGKGSAQSLAGA------GARVKVTEVD-PICALQAAMDGFE-----VVTLDDAASTADIVVTT 309 (464)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCE-----ECCHHHHGGGCSEEEEC
T ss_pred CcccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEeCC-cchhhHHHhcCce-----eccHHHHHhhCCEEEEC
Confidence 57899 9999999999999999999999 9998766543 3333456667876 35899999999999998
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+.. ..++. +.+..||+|++|+.++-+
T Consensus 310 tgt---~~lI~~e~l~~MK~GAILINvGRg 336 (464)
T 3n58_A 310 TGN---KDVITIDHMRKMKDMCIVGNIGHF 336 (464)
T ss_dssp CSS---SSSBCHHHHHHSCTTEEEEECSSS
T ss_pred CCC---ccccCHHHHhcCCCCeEEEEcCCC
Confidence 653 23554 788899999999977643
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.2e-07 Score=91.98 Aligned_cols=163 Identities=12% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh-------------
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET------------- 175 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~------------- 175 (317)
.| .|+.|||+|.||.++|..|.+. |++|+++++. ++..+.. ..|... .....++|+
T Consensus 10 ~~-~~~~ViGlGyvGlp~A~~La~~------G~~V~~~D~~-~~kv~~L-~~g~~p--i~epgl~~ll~~~~~~g~l~~t 78 (431)
T 3ojo_A 10 HG-SKLTVVGLGYIGLPTSIMFAKH------GVDVLGVDIN-QQTIDKL-QNGQIS--IEEPGLQEVYEEVLSSGKLKVS 78 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHH-HTTCCS--SCCTTHHHHHHHHHHTTCEEEE
T ss_pred cC-CccEEEeeCHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHH-HCCCCC--cCCCCHHHHHHhhcccCceEEe
Confidence 46 8999999999999999999999 9998655544 4333332 233211 000111111
Q ss_pred --cCcCCEEEEccCCch------------HHHHHHHHHhcCCCCcEEEEecCchhh---hh----hh-cccCCCCCccEE
Q 021114 176 --ISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLLG---HL----QS-IGLDFPKNIGVI 233 (317)
Q Consensus 176 --v~~ADvVILavP~~~------------~~~vl~ei~~~lk~gaiVi~~~Gv~l~---~~----~~-~~~~l~~~i~vV 233 (317)
+++||+||+|+|... +....+++.+++++|++|++.+++... .+ .+ .+.....+ -.+
T Consensus 79 td~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d-~~v 157 (431)
T 3ojo_A 79 TTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGED-IYL 157 (431)
T ss_dssp SSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTT-EEE
T ss_pred CchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCC-eEE
Confidence 468999999999765 234556899999999999988876321 11 11 11111112 245
Q ss_pred Eecc--CCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCch
Q 021114 234 AVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (317)
Q Consensus 234 ~vhP--n~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~ 295 (317)
...| -.++....+... .+.++ ... +++..+.++.+++.++...+..++++
T Consensus 158 ~~~Pe~~~~G~A~~~~~~---------p~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~ 209 (431)
T 3ojo_A 158 VHCPERVLPGKILEELVH---------NNRII-GGV--TKACIEAGKRVYRTFVQGEMIETDAR 209 (431)
T ss_dssp EECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHTTTCCSCEEEEEHH
T ss_pred EECCCcCCCcchhhcccC---------CCEEE-EeC--CHHHHHHHHHHHHHHhCCcEEeCCHH
Confidence 6677 334443322221 23433 232 47899999999999997655555443
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-08 Score=84.06 Aligned_cols=110 Identities=7% Similarity=-0.025 Sum_probs=77.4
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||. |.||..++++|++. |++|+..+.+. +.. .|... +.+++|+.+..|++++++|
T Consensus 15 ~~IavIGaS~~~g~~G~~~~~~L~~~------G~~V~~vnp~~-~~i-----~G~~~----~~s~~el~~~vDlvii~vp 78 (138)
T 1y81_A 15 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLPVNPNY-DEI-----EGLKC----YRSVRELPKDVDVIVFVVP 78 (138)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTTC-SEE-----TTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHC------CCEEEEeCCCC-CeE-----CCeee----cCCHHHhCCCCCEEEEEeC
Confidence 89999999 99999999999999 99854433332 111 46653 5689999999999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~ 243 (317)
+....++++++.+ ...+.++++.+++.-...+. .-..++.++ .||+++-.
T Consensus 79 ~~~v~~v~~~~~~-~g~~~i~~~~~~~~~~l~~~---a~~~Gi~~i--gpnc~g~~ 128 (138)
T 1y81_A 79 PKVGLQVAKEAVE-AGFKKLWFQPGAESEEIRRF---LEKAGVEYS--FGRCIMVE 128 (138)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCCHHHHHH---HHHHTCEEE--CSCCHHHH
T ss_pred HHHHHHHHHHHHH-cCCCEEEEcCccHHHHHHHH---HHHCCCEEE--cCCcceEE
Confidence 8878888888766 45566777777653211111 101255655 48886644
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=3.1e-07 Score=96.54 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=113.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceec-C-----CCcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE-N-----GTLGD 171 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~-~-----~~~~~ 171 (317)
+-|++|||||.|.||..+|..+... |++|++.+.. ++..+.+.+ .+.... . -...+
T Consensus 314 ~~i~~v~ViGaG~MG~gIA~~~a~a------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~ 386 (742)
T 3zwc_A 314 QPVSSVGVLGLGTMGRGIAISFARV------GISVVAVESD-PKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSS 386 (742)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS-HHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEES
T ss_pred ccccEEEEEcccHHHHHHHHHHHhC------CCchhcccch-HhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccC
Confidence 3458999999999999999999999 9998776654 222222211 110000 0 00122
Q ss_pred HHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 172 IYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
..+.+++||+||=++|-+-.. +++.++-+.+++++||. -+++..+..+.+ .....-+|++.|+--|.+.++
T Consensus 387 ~~~~l~~aDlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~---~~~~p~r~ig~HFfnP~~~m~--- 460 (742)
T 3zwc_A 387 STKELSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIAS---STDRPQLVIGTHFFSPAHVMR--- 460 (742)
T ss_dssp CGGGGGSCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEECCSSTTTCC---
T ss_pred cHHHHhhCCEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcCChHHHHh---hcCCccccccccccCCCCCCc---
Confidence 334578999999999988765 49999999999999986 678888877765 333345899999977766531
Q ss_pred hhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 249 ~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
-.=+.++..++++.++.+.++.+.+|...+.
T Consensus 461 -----------LVEvi~g~~Ts~e~~~~~~~~~~~lgK~pV~ 491 (742)
T 3zwc_A 461 -----------LLEVIPSRYSSPTTIATVMSLSKKIGKIGVV 491 (742)
T ss_dssp -----------EEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred -----------eEEEecCCCCCHHHHHHHHHHHHHhCCCCcc
Confidence 1225688899999999999999999976543
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.9e-08 Score=99.78 Aligned_cols=92 Identities=23% Similarity=0.267 Sum_probs=73.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..+.| ++++|||+|.||..+|+.|+.+ |++|++.++. +.....+...|+. ..+++|+++++|+|+++
T Consensus 216 ~~L~G-ktV~ViG~G~IGk~vA~~Lra~------Ga~Viv~D~d-p~ra~~A~~~G~~-----v~~Leeal~~ADIVi~a 282 (435)
T 3gvp_A 216 MMFGG-KQVVVCGYGEVGKGCCAALKAM------GSIVYVTEID-PICALQACMDGFR-----LVKLNEVIRQVDIVITC 282 (435)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEeCC-hhhhHHHHHcCCE-----eccHHHHHhcCCEEEEC
Confidence 57899 9999999999999999999999 9998765544 3334456677876 35899999999999996
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~G 213 (317)
+. ...++. +.+..||+|++|+.++-
T Consensus 283 -tg--t~~lI~~e~l~~MK~gailINvgr 308 (435)
T 3gvp_A 283 -TG--NKNVVTREHLDRMKNSCIVCNMGH 308 (435)
T ss_dssp -SS--CSCSBCHHHHHHSCTTEEEEECSS
T ss_pred -CC--CcccCCHHHHHhcCCCcEEEEecC
Confidence 22 223565 78889999999997653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.4e-07 Score=74.68 Aligned_cols=96 Identities=14% Similarity=0.047 Sum_probs=64.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceecCCCcCCHHh----hcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYE----TISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~~e----~v~~ADvVILav 186 (317)
|+|+|||+|.+|..+++.|.+. |++|++.++. .+..+... ..|+....+...+.+. .++++|+|++++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~ 77 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLIDID-KDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 77 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEee
Confidence 7999999999999999999998 9988766654 33333333 3464211111223322 267899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+......+.++.+.++++.+|..+.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ii~~~~~~ 105 (140)
T 1lss_A 78 GKEEVNLMSSLLAKSYGINKTIARISEI 105 (140)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEECSST
T ss_pred CCchHHHHHHHHHHHcCCCEEEEEecCH
Confidence 9876655555666667777776655443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.1e-08 Score=84.93 Aligned_cols=90 Identities=20% Similarity=0.152 Sum_probs=66.9
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
| ++|+|||.|.||..+++.|+.. |++|+++.+..++..+.+.+.|... ....+.+++++++|+||.++|..
T Consensus 21 ~-~~v~iiG~G~iG~~~a~~l~~~------g~~v~v~~r~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~Divi~at~~~ 91 (144)
T 3oj0_A 21 G-NKILLVGNGMLASEIAPYFSYP------QYKVTVAGRNIDHVRAFAEKYEYEY--VLINDIDSLIKNNDVIITATSSK 91 (144)
T ss_dssp C-CEEEEECCSHHHHHHGGGCCTT------TCEEEEEESCHHHHHHHHHHHTCEE--EECSCHHHHHHTCSEEEECSCCS
T ss_pred C-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCHHHHHHHHHHhCCce--EeecCHHHHhcCCCEEEEeCCCC
Confidence 7 9999999999999999999988 9887666665444334456666432 12468889999999999999976
Q ss_pred hHHHHHHHHHhcCCCCcEEEEec
Q 021114 190 AQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.. ++. ...+++|.++++.+
T Consensus 92 ~~--~~~--~~~l~~g~~vid~~ 110 (144)
T 3oj0_A 92 TP--IVE--ERSLMPGKLFIDLG 110 (144)
T ss_dssp SC--SBC--GGGCCTTCEEEECC
T ss_pred Cc--Eee--HHHcCCCCEEEEcc
Confidence 32 111 25678888888764
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=89.16 Aligned_cols=110 Identities=21% Similarity=0.158 Sum_probs=76.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC------cCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT------LGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~------~~~~~e~v~~ADvVILa 185 (317)
|+|+|||.|+||.++|..|. . |.+|.+..|.. ...+...+.|+...... .....+.+..+|+||++
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~------g~~V~~~~r~~-~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vila 74 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-L------YHDVTVVTRRQ-EQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVT 74 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-T------TSEEEEECSCH-HHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHh-c------CCceEEEECCH-HHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEE
Confidence 79999999999999999999 8 99887766653 33444555676531000 00013467889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchhh-hhhhcccCCCCCccEEE
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLG-HLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~-~~~~~~~~l~~~i~vV~ 234 (317)
+|+....++++++.+. .++++|.+..|+... .+++ .+|.+ +++.
T Consensus 75 vK~~~~~~~l~~l~~~-~~~~ivs~~nGi~~~e~l~~---~~~~~-~vl~ 119 (307)
T 3ego_A 75 VKQHQLQSVFSSLERI-GKTNILFLQNGMGHIHDLKD---WHVGH-SIYV 119 (307)
T ss_dssp CCGGGHHHHHHHTTSS-CCCEEEECCSSSHHHHHHHT---CCCSC-EEEE
T ss_pred eCHHHHHHHHHHhhcC-CCCeEEEecCCccHHHHHHH---hCCCC-cEEE
Confidence 9999999999888764 566666678898753 4443 45543 4443
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.6e-08 Score=92.17 Aligned_cols=93 Identities=12% Similarity=0.148 Sum_probs=68.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG--FTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+ ++|+|||+|.||.+++++|.+. .|+ +|.++++..++..+.+.+.+ +.. ..+++|+++++|+|+++
T Consensus 134 ~~-~~igiIG~G~~g~~~a~~l~~~-----~g~~~V~v~dr~~~~~~~l~~~~~~~~~~----~~~~~e~v~~aDiVi~a 203 (312)
T 2i99_A 134 SS-EVLCILGAGVQAYSHYEIFTEQ-----FSFKEVRIWNRTKENAEKFADTVQGEVRV----CSSVQEAVAGADVIITV 203 (312)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHH-----CCCSEEEEECSSHHHHHHHHHHSSSCCEE----CSSHHHHHTTCSEEEEC
T ss_pred CC-cEEEEECCcHHHHHHHHHHHHh-----CCCcEEEEEcCCHHHHHHHHHHhhCCeEE----eCCHHHHHhcCCEEEEE
Confidence 45 8999999999999999999764 155 67776665444334444445 443 56899999999999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
+|.. ..++.+ +.+++|++|+++++..
T Consensus 204 tp~~--~~v~~~--~~l~~g~~vi~~g~~~ 229 (312)
T 2i99_A 204 TLAT--EPILFG--EWVKPGAHINAVGASR 229 (312)
T ss_dssp CCCS--SCCBCG--GGSCTTCEEEECCCCS
T ss_pred eCCC--CcccCH--HHcCCCcEEEeCCCCC
Confidence 9953 223332 5789999999887653
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=95.74 Aligned_cols=92 Identities=22% Similarity=0.317 Sum_probs=74.8
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
.+.| ++|+|||+|.||..+|+.++.. |++|++.+ ++....+.+.+.|+. ..+++++++++|+|++++
T Consensus 271 ~l~G-ktV~IiG~G~IG~~~A~~lka~------Ga~Viv~d-~~~~~~~~A~~~Ga~-----~~~l~e~l~~aDvVi~at 337 (494)
T 3ce6_A 271 LIGG-KKVLICGYGDVGKGCAEAMKGQ------GARVSVTE-IDPINALQAMMEGFD-----VVTVEEAIGDADIVVTAT 337 (494)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCHHHHHHHHHTTCE-----ECCHHHHGGGCSEEEECS
T ss_pred CCCc-CEEEEEccCHHHHHHHHHHHHC------CCEEEEEe-CCHHHHHHHHHcCCE-----EecHHHHHhCCCEEEECC
Confidence 6789 9999999999999999999999 99876554 444455677888886 347889999999999999
Q ss_pred CCchHHHHHH-HHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~-ei~~~lk~gaiVi~~~Gv 214 (317)
+... ++. +.++.||+|.+|++++..
T Consensus 338 gt~~---~i~~~~l~~mk~ggilvnvG~~ 363 (494)
T 3ce6_A 338 GNKD---IIMLEHIKAMKDHAILGNIGHF 363 (494)
T ss_dssp SSSC---SBCHHHHHHSCTTCEEEECSSS
T ss_pred CCHH---HHHHHHHHhcCCCcEEEEeCCC
Confidence 7654 334 677889999999987654
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=90.37 Aligned_cols=91 Identities=19% Similarity=0.122 Sum_probs=67.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
+++| +|+|||+|.||.++++.|.+. |++|.+++|+.++..+.+.+.|.. ..+++++ +++|+||+++
T Consensus 114 ~l~~--~v~iiG~G~~g~~~a~~l~~~------g~~v~v~~r~~~~~~~l~~~~~~~-----~~~~~~~-~~~Divi~~t 179 (263)
T 2d5c_A 114 PLKG--PALVLGAGGAGRAVAFALREA------GLEVWVWNRTPQRALALAEEFGLR-----AVPLEKA-REARLLVNAT 179 (263)
T ss_dssp CCCS--CEEEECCSHHHHHHHHHHHHT------TCCEEEECSSHHHHHHHHHHHTCE-----ECCGGGG-GGCSEEEECS
T ss_pred CCCC--eEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHhccc-----hhhHhhc-cCCCEEEEcc
Confidence 5677 799999999999999999998 887777776544333444444543 3477788 9999999999
Q ss_pred CCchHH---HHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQA---DNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~---~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+.... ..+. .+.+++|++|+|++-
T Consensus 180 p~~~~~~~~~~l~--~~~l~~g~~viD~~~ 207 (263)
T 2d5c_A 180 RVGLEDPSASPLP--AELFPEEGAAVDLVY 207 (263)
T ss_dssp STTTTCTTCCSSC--GGGSCSSSEEEESCC
T ss_pred CCCCCCCCCCCCC--HHHcCCCCEEEEeec
Confidence 998542 2222 466889999988653
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.58 E-value=8e-08 Score=81.27 Aligned_cols=111 Identities=11% Similarity=0.031 Sum_probs=75.8
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+ |+||..++++|++. |++|+..+.+.. +. -.|... +.+++|+....|++++++
T Consensus 14 ~~IavIGas~~~g~~G~~~~~~L~~~------G~~v~~vnp~~~g~~-----i~G~~~----~~sl~el~~~~Dlvii~v 78 (145)
T 2duw_A 14 RTIALVGASDKPDRPSYRVMKYLLDQ------GYHVIPVSPKVAGKT-----LLGQQG----YATLADVPEKVDMVDVFR 78 (145)
T ss_dssp CCEEEESCCSCTTSHHHHHHHHHHHH------TCCEEEECSSSTTSE-----ETTEEC----CSSTTTCSSCCSEEECCS
T ss_pred CEEEEECcCCCCCChHHHHHHHHHHC------CCEEEEeCCcccccc-----cCCeec----cCCHHHcCCCCCEEEEEe
Confidence 78999999 89999999999999 988544333320 11 146653 567888888999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS 243 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~ 243 (317)
|+....++++++.+ ...+.++++.+.+.- .+.+ ..-..++.++ .||+++-.
T Consensus 79 p~~~v~~v~~~~~~-~g~~~i~i~~~~~~~-~l~~--~a~~~Gi~~i--gpnc~g~~ 129 (145)
T 2duw_A 79 NSEAAWGVAQEAIA-IGAKTLWLQLGVINE-QAAV--LAREAGLSVV--MDRCPAIE 129 (145)
T ss_dssp CSTHHHHHHHHHHH-HTCCEEECCTTCCCH-HHHH--HHHTTTCEEE--CSCCHHHH
T ss_pred CHHHHHHHHHHHHH-cCCCEEEEcCChHHH-HHHH--HHHHcCCEEE--cCCeeeEE
Confidence 99888889988766 445667766655522 2211 0112356665 48876544
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.9e-07 Score=93.53 Aligned_cols=161 Identities=20% Similarity=0.207 Sum_probs=97.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcc---cHHHHHH---------------------CCceecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR---SFAEARA---------------------AGFTEEN 166 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~---s~~~A~~---------------------~G~~~~~ 166 (317)
|||+|||+|.||.++|..|.+. .|+ +|+++++..++ ..+...+ .|...
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~-----~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~-- 91 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADA-----PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFE-- 91 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHS-----TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEE--
T ss_pred CEEEEECcCHHHHHHHHHHHHh-----CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeE--
Confidence 8999999999999999999765 168 88766655330 2222211 22221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCch------------HHHHHHHHHhcCCCCcEEEEecCchh------hh--h-hhcccC
Q 021114 167 GTLGDIYETISGSDLVLLLISDAA------------QADNYEKIFSCMKPNSILGLSHGFLL------GH--L-QSIGLD 225 (317)
Q Consensus 167 ~~~~~~~e~v~~ADvVILavP~~~------------~~~vl~ei~~~lk~gaiVi~~~Gv~l------~~--~-~~~~~~ 225 (317)
..++ .+++++||+||+++|... .....+++.+++++|++|++.+++.. .. + +..+..
T Consensus 92 -~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~ 169 (478)
T 3g79_A 92 -CTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLK 169 (478)
T ss_dssp -EESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCC
T ss_pred -EeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCC
Confidence 1234 688999999999998653 23355689999999999998887632 11 1 111211
Q ss_pred CCCCccEEEeccC--CCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHc-CCCcEEecCc
Q 021114 226 FPKNIGVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSPFTFATTL 294 (317)
Q Consensus 226 l~~~i~vV~vhPn--~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~al-G~~~~~~tT~ 294 (317)
...++ .+...|. .++....+... ...++ ... +++..+.++.+++.+ +...+..+++
T Consensus 170 ~~~d~-~v~~~Pe~~~~G~a~~~~~~---------~~~Iv-~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~ 228 (478)
T 3g79_A 170 AGEDF-ALAHAPERVMVGRLLKNIRE---------HDRIV-GGI--DEASTKRAVELYSPVLTVGQVIPMSA 228 (478)
T ss_dssp BTTTB-EEEECCCCCCTTSHHHHHHH---------SCEEE-EES--SHHHHHHHHHHHGGGCSSCCEEEEEH
T ss_pred cCCce-eEEeCCccCCccchhhhhcC---------CcEEE-EeC--CHHHHHHHHHHHhhhccCCeEEeCCH
Confidence 11222 4566773 33443322221 12333 222 357779999999999 7655544443
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.52 E-value=7.8e-09 Score=95.99 Aligned_cols=97 Identities=12% Similarity=0.141 Sum_probs=70.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
|+|+|||.|+||.++|..|.+. |++|.++.|..+. .+.....|.... ....+..+.+ +.+|+||+++|+..
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~------g~~V~~~~r~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~D~vilavk~~~ 74 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQS------LPHTTLIGRHAKT-ITYYTVPHAPAQ-DIVVKGYEDVTNTFDVIIIAVKTHQ 74 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHH------CTTCEEEESSCEE-EEEESSTTSCCE-EEEEEEGGGCCSCEEEEEECSCGGG
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeccCc-EEEEecCCeecc-ceecCchHhcCCCCCEEEEeCCccC
Confidence 7899999999999999999999 8888877776332 111112232100 0012344544 88999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCchh
Q 021114 191 QADNYEKIFSCMKPNSILG-LSHGFLL 216 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi-~~~Gv~l 216 (317)
..++++++.+.++++++|+ ...|+..
T Consensus 75 ~~~~l~~l~~~l~~~~~iv~~~nGi~~ 101 (294)
T 3g17_A 75 LDAVIPHLTYLAHEDTLIILAQNGYGQ 101 (294)
T ss_dssp HHHHGGGHHHHEEEEEEEEECCSSCCC
T ss_pred HHHHHHHHHHhhCCCCEEEEeccCccc
Confidence 9999999999998887655 6778854
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=7.6e-08 Score=93.10 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=75.4
Q ss_pred hhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCcee--cCCCcC
Q 021114 94 VRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLG 170 (317)
Q Consensus 94 v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~~~~ 170 (317)
.++|+|....+...++| ++|+|||.|.||..+++.++.. |++|++.+++ .+..+.+.+ .|... ......
T Consensus 152 ~~~g~~~~~~~~~~l~g-~~V~ViG~G~iG~~~a~~a~~~------Ga~V~~~d~~-~~~l~~~~~~~g~~~~~~~~~~~ 223 (377)
T 2vhw_A 152 TQGGRGVLMGGVPGVEP-ADVVVIGAGTAGYNAARIANGM------GATVTVLDIN-IDKLRQLDAEFCGRIHTRYSSAY 223 (377)
T ss_dssp GGTSCCCCTTCBTTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSSEEEECCHH
T ss_pred hcCCCcccccCCCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCC-HHHHHHHHHhcCCeeEeccCCHH
Confidence 44555532224457899 9999999999999999999999 9987665554 444444444 45420 000123
Q ss_pred CHHhhcCcCCEEEEccC--CchHHHH-HHHHHhcCCCCcEEEEec
Q 021114 171 DIYETISGSDLVLLLIS--DAAQADN-YEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP--~~~~~~v-l~ei~~~lk~gaiVi~~~ 212 (317)
++++.++++|+||.+++ ......+ .++.++.||+|.+|++++
T Consensus 224 ~l~~~l~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 224 ELEGAVKRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred HHHHHHcCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 56788899999999774 3222223 357788999999999876
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=92.35 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=72.8
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC---------CC---------
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---------GT--------- 168 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---------~~--------- 168 (317)
.+++ .+|+|||.|.||...++.++.. |.+|++.+++ ....+.+.+.|....+ +.
T Consensus 181 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~-~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~ 252 (381)
T 3p2y_A 181 TVKP-ASALVLGVGVAGLQALATAKRL------GAKTTGYDVR-PEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAER 252 (381)
T ss_dssp EECC-CEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS-GGGHHHHHHTTCEECCCC-------------CHHHH
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccchhhhhHHHH
Confidence 4577 8999999999999999999999 9987765555 4456677777754210 00
Q ss_pred ---cCCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 169 ---LGDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 169 ---~~~~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
..+++++++++|+||.++ |......++ ++..+.||+|++|+|++
T Consensus 253 ~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 253 AQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred hhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEe
Confidence 124678999999999885 543333444 58889999999999886
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-07 Score=81.60 Aligned_cols=80 Identities=24% Similarity=0.238 Sum_probs=59.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
++|||||+|.||..++++|.+. |++++..++++.+. + + . ..+++|++ .++|+|++++|+..
T Consensus 1 m~vgiIG~G~mG~~~~~~l~~~------g~~lv~v~d~~~~~-~---~---~-----~~~~~~l~~~~~DvVv~~~~~~~ 62 (236)
T 2dc1_A 1 MLVGLIGYGAIGKFLAEWLERN------GFEIAAILDVRGEH-E---K---M-----VRGIDEFLQREMDVAVEAASQQA 62 (236)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCCC-T---T---E-----ESSHHHHTTSCCSEEEECSCHHH
T ss_pred CEEEEECCCHHHHHHHHHHhcC------CCEEEEEEecCcch-h---h---h-----cCCHHHHhcCCCCEEEECCCHHH
Confidence 5899999999999999999877 88874444443321 1 1 2 45889998 79999999999987
Q ss_pred HHHHHHHHHhcCCCCcEEEEec
Q 021114 191 QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.+++... ++.|+.|++..
T Consensus 63 ~~~~~~~~---l~~G~~vv~~~ 81 (236)
T 2dc1_A 63 VKDYAEKI---LKAGIDLIVLS 81 (236)
T ss_dssp HHHHHHHH---HHTTCEEEESC
T ss_pred HHHHHHHH---HHCCCcEEEEC
Confidence 77766543 45687777654
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.38 E-value=3.7e-07 Score=89.84 Aligned_cols=98 Identities=18% Similarity=0.168 Sum_probs=72.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-------------CCc----
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------------GTL---- 169 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-------------~~~---- 169 (317)
.+++ .+|+|||.|.+|..+++.++.. |.+|++.+++. ...+.+.+.|..... +..
T Consensus 187 ~v~~-~kV~ViG~G~iG~~aa~~a~~l------Ga~V~v~D~~~-~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s 258 (405)
T 4dio_A 187 TVPA-AKIFVMGAGVAGLQAIATARRL------GAVVSATDVRP-AAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMS 258 (405)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSST-THHHHHHHTTCEECCCCC-----------------
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCH-HHHHHHHHcCCceeecccccccccccccchhhhcc
Confidence 4677 8999999999999999999999 99887665554 445666667753100 011
Q ss_pred --------CCHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 170 --------GDIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 170 --------~~~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+++++++++|+||.++ |......++ ++....||+|++|+|++
T Consensus 259 ~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 259 GEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 25678899999999885 544444444 48899999999999886
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.1e-06 Score=69.90 Aligned_cols=77 Identities=21% Similarity=0.264 Sum_probs=55.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh----hcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE----TISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e----~v~~ADvVILavP 187 (317)
++|.|||+|.+|..+|+.|++. |++|++.++ +++..+.+.+.|+..-.+...+.+. -+.++|+||+++|
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~-~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS------DIPLVVIET-SRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIP 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEES-CHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCS
T ss_pred CCEEEECcCHHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECC
Confidence 4799999999999999999999 998766554 4555667777786431122223321 2578999999999
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
+......+
T Consensus 81 ~~~~n~~~ 88 (140)
T 3fwz_A 81 NGYEAGEI 88 (140)
T ss_dssp CHHHHHHH
T ss_pred ChHHHHHH
Confidence 88765433
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=2e-06 Score=80.35 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=48.8
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC--ceEEEEecCCcccHHHHHHCC---------ceecCCCcCCHHhhcCcC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAG---------FTEENGTLGDIYETISGS 179 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~~G---------~~~~~~~~~~~~e~v~~A 179 (317)
|+||+|||.|.||.++|..|... | .+|++.++..++....+.+.+ ... ...+. +.+++|
T Consensus 1 m~kI~VIGaG~~G~~la~~L~~~------g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~d~-~~~~~a 70 (309)
T 1hyh_A 1 ARKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNI---VINDW-AALADA 70 (309)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEE---EESCG-GGGTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEE---EeCCH-HHhCCC
Confidence 47999999999999999999988 8 577666654322222222111 111 02466 788999
Q ss_pred CEEEEccCCch
Q 021114 180 DLVLLLISDAA 190 (317)
Q Consensus 180 DvVILavP~~~ 190 (317)
|+||+++|...
T Consensus 71 DvViiav~~~~ 81 (309)
T 1hyh_A 71 DVVISTLGNIK 81 (309)
T ss_dssp SEEEECCSCGG
T ss_pred CEEEEecCCcc
Confidence 99999999866
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-07 Score=86.48 Aligned_cols=97 Identities=20% Similarity=0.190 Sum_probs=67.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHC----CceecCCCcCCHHhhcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.. ++|+|||+|.||.+++++|.... + .+|.+++|..++..+.+.+. |+.. ....+.+++++++|+|+
T Consensus 128 ~~-~~v~iIGaG~~a~~~a~al~~~~-----~~~~V~V~~r~~~~a~~la~~~~~~~g~~~--~~~~~~~eav~~aDiVi 199 (350)
T 1x7d_A 128 NA-RKMALIGNGAQSEFQALAFHKHL-----GIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIIT 199 (350)
T ss_dssp TC-CEEEEECCSTTHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEE
T ss_pred cC-CeEEEECCcHHHHHHHHHHHHhC-----CCcEEEEEcCCHHHHHHHHHHHHhccCceE--EEeCCHHHHHhcCCEEE
Confidence 35 89999999999999999986530 3 36777776644443444332 5321 12568999999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
++||......++. .+.+++|++|++++++.
T Consensus 200 ~aTps~~~~pvl~--~~~l~~G~~V~~vgs~~ 229 (350)
T 1x7d_A 200 TVTADKAYATIIT--PDMLEPGMHLNAVGGDC 229 (350)
T ss_dssp ECCCCSSEEEEEC--GGGCCTTCEEEECSCCB
T ss_pred EeccCCCCCceec--HHHcCCCCEEEECCCCC
Confidence 9999863222332 25689999999887653
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=8e-07 Score=86.85 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=70.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCc-----------------
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL----------------- 169 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~----------------- 169 (317)
.++| ++|+|||.|.+|...++.++.. |.+|++.+++ ....+.+.+.|.....-..
T Consensus 169 ~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~v~D~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~ 240 (401)
T 1x13_A 169 KVPP-AKVMVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDA 240 (401)
T ss_dssp EECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-GGGHHHHHHTTCEECCC--------CCHHHHHHSHH
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCEEEEecccccccccccchhhccHH
Confidence 5789 9999999999999999999999 9987665554 4445566677754200000
Q ss_pred ------CCHHhhcCcCCEEEEc--cCCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 170 ------GDIYETISGSDLVLLL--ISDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 170 ------~~~~e~v~~ADvVILa--vP~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+++++++++|+||.+ +|......++ ++.+..||+|.+|++++
T Consensus 241 ~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva 292 (401)
T 1x13_A 241 FIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLA 292 (401)
T ss_dssp HHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEc
Confidence 0266788899999999 5532222344 46778899999999886
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.5e-06 Score=67.28 Aligned_cols=93 Identities=16% Similarity=0.053 Sum_probs=60.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh----cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~----v~~ADvVILavP 187 (317)
++|.|+|+|.+|.++++.|.+. |++|++.++ +++..+.+.+.|+..-.+...+.+.+ +.++|+||+++|
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~~------g~~V~~id~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTAA------GKKVLAVDK-SKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES-CHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEEEC-CHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 7899999999999999999999 998866554 44555666666764211223343322 568999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEe
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+......+-..+..+....++..+
T Consensus 80 ~~~~n~~~~~~a~~~~~~~iia~~ 103 (141)
T 3llv_A 80 DDEFNLKILKALRSVSDVYAIVRV 103 (141)
T ss_dssp CHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred CHHHHHHHHHHHHHhCCceEEEEE
Confidence 665544333433333333444433
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=70.42 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=64.1
Q ss_pred cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceecCCCcCCH---Hhh-cCc
Q 021114 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YET-ISG 178 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~---~e~-v~~ 178 (317)
.+....+ ++|.|||+|.+|..+++.|++. |++|++..+.. +..+.+. +.|...-.+...+. .++ +.+
T Consensus 13 ~~~~~~~-~~v~IiG~G~iG~~la~~L~~~------g~~V~vid~~~-~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ 84 (155)
T 2g1u_A 13 MSKKQKS-KYIVIFGCGRLGSLIANLASSS------GHSVVVVDKNE-YAFHRLNSEFSGFTVVGDAAEFETLKECGMEK 84 (155)
T ss_dssp ----CCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCG-GGGGGSCTTCCSEEEESCTTSHHHHHTTTGGG
T ss_pred hhcccCC-CcEEEECCCHHHHHHHHHHHhC------CCeEEEEECCH-HHHHHHHhcCCCcEEEecCCCHHHHHHcCccc
Confidence 3577788 9999999999999999999999 99887666543 3333333 44542111112232 223 678
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCc-EEEEecCc
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGF 214 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv 214 (317)
+|+||+++++......+.++...+.+.. ++..+.+.
T Consensus 85 ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 85 ADMVFAFTNDDSTNFFISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp CSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEECSSG
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 9999999998776665555555443333 34444443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-06 Score=80.06 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=60.2
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|||||+|.||.. ++..|++. .+.+++...+++.+. .+.+.+.|+.. ..+.++++++.|+|++++|+.
T Consensus 7 ~~igiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~~----~~~~~~ll~~~D~V~i~tp~~ 77 (308)
T 3uuw_A 7 IKMGMIGLGSIAQKAYLPILTKS-----ERFEFVGAFTPNKVKREKICSDYRIMP----FDSIESLAKKCDCIFLHSSTE 77 (308)
T ss_dssp CEEEEECCSHHHHHHTHHHHTSC-----SSSEEEEEECSCHHHHHHHHHHHTCCB----CSCHHHHHTTCSEEEECCCGG
T ss_pred CcEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHHhcCCEEEEeCCcH
Confidence 68999999999996 88888774 166766444544433 34455567653 679999999999999999999
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
.+.++..+.+.
T Consensus 78 ~h~~~~~~al~ 88 (308)
T 3uuw_A 78 THYEIIKILLN 88 (308)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 99887766544
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.23 E-value=3.1e-06 Score=79.66 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=60.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..++.+|++. .+++++...+++.... +.+.+.|... +.+++++++ +.|+|++++|+
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAAN-----PDLELVVIADPFIEGAQRLAEANGAEA----VASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHTTTCEE----ESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999875 1566654455544333 3455567543 679999998 89999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 76 ~~h~~~~~~al~ 87 (344)
T 3euw_A 76 STHVDLITRAVE 87 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhhHHHHHHHHH
Confidence 999887766554
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.6e-06 Score=84.87 Aligned_cols=97 Identities=15% Similarity=0.192 Sum_probs=70.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--------eEEEEecCCc---ccHHHHHHC---------Cceec--CCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--------VVKVGLRKGS---RSFAEARAA---------GFTEE--NGTL 169 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--------~Vivg~r~~~---~s~~~A~~~---------G~~~~--~~~~ 169 (317)
.||+|||.|+.|.++|..|.+. |+ +|.+|.|+.+ +...+.... |+.-. -...
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n------g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t 108 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN------CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVAN 108 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH------HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEE
T ss_pred CeEEEECcCHHHHHHHHHHHHc------CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEe
Confidence 4899999999999999999887 53 4777776532 112222111 11100 0014
Q ss_pred CCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE-EecCc
Q 021114 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (317)
Q Consensus 170 ~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi-~~~Gv 214 (317)
.|+++++++||+||+++|.+...++++++.++++++..++ .+.|+
T Consensus 109 ~dl~~al~~ad~ii~avPs~~~r~~l~~l~~~~~~~~~iv~~~KGi 154 (391)
T 4fgw_A 109 PDLIDSVKDVDIIVFNIPHQFLPRICSQLKGHVDSHVRAISCLKGF 154 (391)
T ss_dssp SCHHHHHTTCSEEEECSCGGGHHHHHHHHTTTSCTTCEEEECCCSC
T ss_pred CCHHHHHhcCCEEEEECChhhhHHHHHHhccccCCCceeEEecccc
Confidence 5889999999999999999999999999999999998776 45575
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.23 E-value=9.2e-06 Score=69.39 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=60.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh--cCcCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET--ISGSD 180 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~--v~~AD 180 (317)
.++.+ ++|.|||+|.||..+|+.|++. . |++|++.+++ ++..+.+.+.|+..-.+...+ +.++ +.++|
T Consensus 35 ~~~~~-~~v~IiG~G~~G~~~a~~L~~~---~--g~~V~vid~~-~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad 107 (183)
T 3c85_A 35 INPGH-AQVLILGMGRIGTGAYDELRAR---Y--GKISLGIEIR-EEAAQQHRSEGRNVISGDATDPDFWERILDTGHVK 107 (183)
T ss_dssp BCCTT-CSEEEECCSHHHHHHHHHHHHH---H--CSCEEEEESC-HHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCC
T ss_pred cCCCC-CcEEEECCCHHHHHHHHHHHhc---c--CCeEEEEECC-HHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCC
Confidence 55678 8999999999999999999863 0 6777665554 445556666776321111223 2344 77899
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~g 205 (317)
+||+++|+......+-.....+.++
T Consensus 108 ~vi~~~~~~~~~~~~~~~~~~~~~~ 132 (183)
T 3c85_A 108 LVLLAMPHHQGNQTALEQLQRRNYK 132 (183)
T ss_dssp EEEECCSSHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCChHHHHHHHHHHHHHCCC
Confidence 9999999876554333344444433
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.1e-06 Score=66.91 Aligned_cols=99 Identities=12% Similarity=0.068 Sum_probs=59.4
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-v~~ADvV 182 (317)
.+++ ++|.|+|+|.+|..+++.|++. |++|++.++. .+..+.+.+.|...-.+...+.+ ++ +.++|+|
T Consensus 3 ~~~~-~~v~I~G~G~iG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~v 74 (144)
T 2hmt_A 3 RIKN-KQFAVIGLGRFGGSIVKELHRM------GHEVLAVDIN-EEKVNAYASYATHAVIANATEENELLSLGIRNFEYV 74 (144)
T ss_dssp ---C-CSEEEECCSHHHHHHHHHHHHT------TCCCEEEESC-HHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEE
T ss_pred CCcC-CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEE
Confidence 4566 8899999999999999999998 9887666553 33333333344321111122332 22 6789999
Q ss_pred EEccCCc-hHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDA-AQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~-~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++++.. .....+.+....+.+..++..+.+
T Consensus 75 i~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 106 (144)
T 2hmt_A 75 IVAIGANIQASTLTTLLLKELDIPNIWVKAQN 106 (144)
T ss_dssp EECCCSCHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred EECCCCchHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 9999975 332333344444555555555544
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.6e-06 Score=82.31 Aligned_cols=99 Identities=13% Similarity=0.098 Sum_probs=71.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---------------
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG--------------- 170 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~--------------- 170 (317)
..++| ++|+|||.|.+|...++.++.. |.+|++.+++ ....+.+.+.|.....-...
T Consensus 168 ~~l~g-~~V~ViGaG~iG~~aa~~a~~~------Ga~V~~~d~~-~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~ 239 (384)
T 1l7d_A 168 GTVPP-ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEM 239 (384)
T ss_dssp EEECC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC------------------
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeecccccccccccccchhhc
Confidence 47899 9999999999999999999999 9987665554 34455666677542000000
Q ss_pred ----------CHHhhcCcCCEEEEcc--CCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 171 ----------DIYETISGSDLVLLLI--SDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 171 ----------~~~e~v~~ADvVILav--P~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
.+++.++++|+||.++ |......++ ++.+..||+|.+|++++
T Consensus 240 s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva 294 (384)
T 1l7d_A 240 GEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 294 (384)
T ss_dssp -----CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred CHHHHhhhHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEe
Confidence 1667889999999988 433222344 56778899999999876
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.18 E-value=3.6e-06 Score=78.75 Aligned_cols=79 Identities=20% Similarity=0.200 Sum_probs=59.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
++|||||+|.||..++..|++. .+++++...+++.+. .+.+.+.|+. ..+.+++++ +.|+|++++|+
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGN-----ADARLVAVADAFPAAAEAIAGAYGCE-----VRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCE-----ECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHHHHHHHhCCC-----cCCHHHHhcCCCCCEEEEeCCc
Confidence 6899999999999999999874 156665444544433 3445556664 468999987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 74 ~~h~~~~~~al~ 85 (331)
T 4hkt_A 74 DTHADLIERFAR 85 (331)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 999887765544
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-06 Score=78.68 Aligned_cols=81 Identities=14% Similarity=0.126 Sum_probs=60.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..+++.|++. .+.+++...+++. +..+.+.+.|+.. .+.+.++++. +.|+|++++|+
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRES-----AQAEVRGIASRRLENAQKMAKELAIPV---AYGSYEELCKDETIDIIYIPTYN 77 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHS-----SSEEEEEEBCSSSHHHHHHHHHTTCCC---CBSSHHHHHHCTTCSEEEECCCG
T ss_pred EEEEEECchHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHcCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999884 1566654444443 3334555667631 2679999987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 78 ~~h~~~~~~al~ 89 (330)
T 3e9m_A 78 QGHYSAAKLALS 89 (330)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999887765544
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.5e-06 Score=80.87 Aligned_cols=91 Identities=15% Similarity=0.210 Sum_probs=66.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||+|.||.++++.|++.. +. +|.+++|+ +..+.+.+ .|+... .. ++++++++||+|++||
T Consensus 122 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~--~a~~la~~l~~~~g~~~~--~~-~~~eav~~aDIVi~aT 191 (313)
T 3hdj_A 122 SVLGLFGAGTQGAEHAAQLSARF-----ALEAILVHDPY--ASPEILERIGRRCGVPAR--MA-APADIAAQADIVVTAT 191 (313)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECTT--CCHHHHHHHHHHHTSCEE--EC-CHHHHHHHCSEEEECC
T ss_pred cEEEEECccHHHHHHHHHHHHhC-----CCcEEEEECCc--HHHHHHHHHHHhcCCeEE--Ee-CHHHHHhhCCEEEEcc
Confidence 89999999999999999998740 33 67777776 44444432 355321 14 8999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
|... .++. .+.+++|++|++++++..
T Consensus 192 ~s~~--pvl~--~~~l~~G~~V~~vGs~~p 217 (313)
T 3hdj_A 192 RSTT--PLFA--GQALRAGAFVGAIGSSLP 217 (313)
T ss_dssp CCSS--CSSC--GGGCCTTCEEEECCCSST
T ss_pred CCCC--cccC--HHHcCCCcEEEECCCCCC
Confidence 9752 2332 356899999999987643
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=4.1e-06 Score=79.19 Aligned_cols=81 Identities=10% Similarity=0.130 Sum_probs=60.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..++.+|++. +.+.+++...+.+.+.. +.+.+.|+.. ..+.+|+++ +.|+|++++|+
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp~ 85 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKH----ADRAELIDVCDIDPAALKAAVERTGARG----HASLTDMLAQTDADIVILTTPS 85 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHHCCEE----ESCHHHHHHHCCCSEEEECSCG
T ss_pred ceEEEEcCcHHHHHHHHHHHhC----CCCeEEEEEEcCCHHHHHHHHHHcCCce----eCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999874 01566654455544333 3455567753 679999986 89999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 86 ~~h~~~~~~al~ 97 (354)
T 3q2i_A 86 GLHPTQSIECSE 97 (354)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887765443
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.2e-05 Score=67.63 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=76.5
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||. |.+|..++++|++. |++| +........ -.|... +.+++|+....|++++++|
T Consensus 23 ~~iaVVGas~~~g~~G~~~~~~l~~~------G~~v-~~Vnp~~~~-----i~G~~~----y~sl~~l~~~vDlvvi~vp 86 (144)
T 2d59_A 23 KKIALVGASPKPERDANIVMKYLLEH------GYDV-YPVNPKYEE-----VLGRKC----YPSVLDIPDKIEVVDLFVK 86 (144)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEE-EEECTTCSE-----ETTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CEEEEEccCCCCCchHHHHHHHHHHC------CCEE-EEECCCCCe-----ECCeec----cCCHHHcCCCCCEEEEEeC
Confidence 89999999 79999999999998 9974 333332211 146553 5688898889999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHH
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf 248 (317)
+....+++++....-. +.+ ++..|..-..+.+ ..-..++++++ ||+++-...+++
T Consensus 87 ~~~~~~vv~~~~~~gi-~~i-~~~~g~~~~~l~~--~a~~~Gi~vvG--pnc~gv~~~~~~ 141 (144)
T 2d59_A 87 PKLTMEYVEQAIKKGA-KVV-WFQYNTYNREASK--KADEAGLIIVA--NRCMMREHERLL 141 (144)
T ss_dssp HHHHHHHHHHHHHHTC-SEE-EECTTCCCHHHHH--HHHHTTCEEEE--SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CEE-EECCCchHHHHHH--HHHHcCCEEEc--CCchhhcchhhc
Confidence 9888889987665432 334 4455553222211 01123566654 888877655554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.5e-06 Score=80.18 Aligned_cols=101 Identities=14% Similarity=0.093 Sum_probs=69.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCcee--cCCCcCCHHhhcCcCCE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTE--ENGTLGDIYETISGSDL 181 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~--~~~~~~~~~e~v~~ADv 181 (317)
...++| ++|+|+|.|.+|..+++.++.. |++|++.+++ .+..+.+.+ .|... ......+++++++++|+
T Consensus 161 ~~~l~~-~~V~ViGaG~iG~~~a~~l~~~------Ga~V~~~d~~-~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~Dv 232 (369)
T 2eez_A 161 VPGVAP-ASVVILGGGTVGTNAAKIALGM------GAQVTILDVN-HKRLQYLDDVFGGRVITLTATEANIKKSVQHADL 232 (369)
T ss_dssp BTBBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECC-HHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCE
Confidence 357899 9999999999999999999999 9987766654 333444443 44320 00012356678899999
Q ss_pred EEEccCCch-HH-HH-HHHHHhcCCCCcEEEEecC
Q 021114 182 VLLLISDAA-QA-DN-YEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 182 VILavP~~~-~~-~v-l~ei~~~lk~gaiVi~~~G 213 (317)
||.+++... .. .+ .++.++.|++|.+|++++.
T Consensus 233 Vi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~ 267 (369)
T 2eez_A 233 LIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAV 267 (369)
T ss_dssp EEECCC-------CCSCHHHHTTSCTTCEEEECC-
T ss_pred EEECCCCCccccchhHHHHHHHhhcCCCEEEEEec
Confidence 999998653 22 23 3577889999999987763
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-06 Score=80.56 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=58.4
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| ++|+|||.|.||..+++.|+.. |+ +|++.++..++..+.+.+.|... ....++.+.+.++|+||.+
T Consensus 164 ~l~g-~~VlIiGaG~iG~~~a~~l~~~------G~~~V~v~~r~~~ra~~la~~~g~~~--~~~~~l~~~l~~aDvVi~a 234 (404)
T 1gpj_A 164 SLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVSA 234 (404)
T ss_dssp CCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEEC
T ss_pred cccC-CEEEEEChHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCce--ecHHhHHHHhcCCCEEEEc
Confidence 5789 9999999999999999999999 98 77777665443335566667542 1134677888999999999
Q ss_pred cCCchH
Q 021114 186 ISDAAQ 191 (317)
Q Consensus 186 vP~~~~ 191 (317)
+|....
T Consensus 235 t~~~~~ 240 (404)
T 1gpj_A 235 TAAPHP 240 (404)
T ss_dssp CSSSSC
T ss_pred cCCCCc
Confidence 986543
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.7e-06 Score=79.16 Aligned_cols=81 Identities=23% Similarity=0.224 Sum_probs=59.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
++|||||+|.||..++..|++. .+.+++...+.+.+. .+.+.+.|+.. .+.+++++++ +.|+|++++|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMI-----DDAILYAISDVREDRLREMKEKLGVEK---AYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGS-----TTEEEEEEECSCHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHhCCCc---eeCCHHHHhcCCCCCEEEEcCCC
Confidence 5899999999999999999874 156665444554433 33455556531 2579999987 89999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 75 ~~h~~~~~~al~ 86 (344)
T 3ezy_A 75 NTHSELVIACAK 86 (344)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHh
Confidence 998887765544
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=98.11 E-value=4.1e-05 Score=76.10 Aligned_cols=159 Identities=14% Similarity=0.172 Sum_probs=96.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-------------------HHHHCCceecCCCcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-------------------EARAAGFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-------------------~A~~~G~~~~~~~~~~~ 172 (317)
.+|+|||+|-+|..+|..|.+. |++| ++.|.+++..+ ++.+.|-.. ..++.
T Consensus 22 ~~IaViGlGYVGLp~A~~~A~~------G~~V-~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~---~tt~~ 91 (444)
T 3vtf_A 22 ASLSVLGLGYVGVVHAVGFALL------GHRV-VGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLS---FAESA 91 (444)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCEE-EEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---ECSSH
T ss_pred CEEEEEccCHHHHHHHHHHHhC------CCcE-EEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCee---EEcCH
Confidence 7999999999999999999999 9987 46665543222 223333221 14578
Q ss_pred HhhcCcCCEEEEccCCc----------hHHHHHHHHHhcCC---CCcEEEEec----Cch--h-hhhhhcccCCCCCcc-
Q 021114 173 YETISGSDLVLLLISDA----------AQADNYEKIFSCMK---PNSILGLSH----GFL--L-GHLQSIGLDFPKNIG- 231 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~----------~~~~vl~ei~~~lk---~gaiVi~~~----Gv~--l-~~~~~~~~~l~~~i~- 231 (317)
++++++||++|+|+|.. ......+.+.++|+ ++++|++-+ |++ + ..+.+. . ..+.+
T Consensus 92 ~~ai~~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~--~-~~~~~f 168 (444)
T 3vtf_A 92 EEAVAATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE--E-AGGVKF 168 (444)
T ss_dssp HHHHHTSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT--T-TTTCCC
T ss_pred HHHHhcCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH--h-CCCCCc
Confidence 89999999999998731 22345566777775 577887654 332 1 111110 1 12333
Q ss_pred EEEeccC--CCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecCch
Q 021114 232 VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLE 295 (317)
Q Consensus 232 vV~vhPn--~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT~~ 295 (317)
.|...|- -+|..+.++..-- ..++. ..++++.+.+..+.+.+....+ .++++
T Consensus 169 ~v~~~PErl~eG~a~~d~~~~~--------riViG---~~~~~a~~~~~~ly~~~~~~~~-~~~~~ 222 (444)
T 3vtf_A 169 SVASNPEFLREGSALEDFFKPD--------RIVIG---AGDERAASFLLDVYKAVDAPKL-VMKPR 222 (444)
T ss_dssp EEEECCCCCCTTSHHHHHHSCS--------CEEEE---ESSHHHHHHHHHHTTTSCSCEE-EECHH
T ss_pred eeecCcccccCCccccccccCC--------cEEEc---CCCHHHHHHHHHHHhccCCCEE-Eechh
Confidence 3566662 3455555554432 12222 2336788888888888875544 44443
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=6e-06 Score=77.78 Aligned_cols=80 Identities=18% Similarity=0.137 Sum_probs=58.9
Q ss_pred CEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcc-cHHHHHHCCc--eecCCCcCCHHhhcCc--CCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSR-SFAEARAAGF--TEENGTLGDIYETISG--SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~--~~~~~~~~~~~e~v~~--ADvVILa 185 (317)
.+|||||+|.||..++.+|+ +. .+.+++...+++.. ..+.+.+.|+ .. ..+++|++++ .|+|+++
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~-----~~~~l~av~d~~~~~~~~~~~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 73 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKL-----SGAEIVAVTDVNQEAAQKVVEQYQLNATV----YPNDDSLLADENVDAVLVT 73 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----SSEEEEEEECSSHHHHHHHHHHTTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred EEEEEECccHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEC
Confidence 58999999999999999998 42 15666544454433 3345566673 32 5799999876 9999999
Q ss_pred cCCchHHHHHHHHHh
Q 021114 186 ISDAAQADNYEKIFS 200 (317)
Q Consensus 186 vP~~~~~~vl~ei~~ 200 (317)
+|+..+.++..+.+.
T Consensus 74 tp~~~h~~~~~~al~ 88 (344)
T 3mz0_A 74 SWGPAHESSVLKAIK 88 (344)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHH
Confidence 999999887765543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.10 E-value=3e-05 Score=60.27 Aligned_cols=94 Identities=16% Similarity=0.038 Sum_probs=63.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVIL 184 (317)
.+ ++|+|+|.|.||.++++.|.+. | ++|++..++ ....+.....++........ ++.++++++|+||.
T Consensus 4 ~~-~~v~I~G~G~iG~~~~~~l~~~------g~~~v~~~~r~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~ 75 (118)
T 3ic5_A 4 MR-WNICVVGAGKIGQMIAALLKTS------SNYSVTVADHD-LAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVIS 75 (118)
T ss_dssp TC-EEEEEECCSHHHHHHHHHHHHC------SSEEEEEEESC-HHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred Cc-CeEEEECCCHHHHHHHHHHHhC------CCceEEEEeCC-HHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence 35 8999999999999999999998 9 777666654 33344444445332111122 34567889999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|......+++... +.|...++.++
T Consensus 76 ~~~~~~~~~~~~~~~---~~g~~~~~~~~ 101 (118)
T 3ic5_A 76 AAPFFLTPIIAKAAK---AAGAHYFDLTE 101 (118)
T ss_dssp CSCGGGHHHHHHHHH---HTTCEEECCCS
T ss_pred CCCchhhHHHHHHHH---HhCCCEEEecC
Confidence 998876655655443 34556665554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=98.08 E-value=9.9e-06 Score=76.36 Aligned_cols=91 Identities=21% Similarity=0.287 Sum_probs=58.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHH-HH--HCC------ceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAE-AR--AAG------FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~-A~--~~G------~~~~~~~~~~~~e~v~~AD 180 (317)
|||+|||.|.||.++|..|... |+ +|++.++. ++..+. +. ..+ ... ...+ .+.+++||
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~------g~~~~V~l~D~~-~~~~~~~~~~l~~~~~~~~~~~i---~~~d-~~~~~~aD 69 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVD-KKRAEGDALDLIHGTPFTRRANI---YAGD-YADLKGSD 69 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSS-HHHHHHHHHHHHHHGGGSCCCEE---EECC-GGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCC-hHHHHHHHHHHHhhhhhcCCcEE---EeCC-HHHhCCCC
Confidence 5899999999999999999988 88 77666554 322222 21 111 111 0234 46789999
Q ss_pred EEEEccCCchH----------------HHHHHHHHhcCCCCcEEE-EecCc
Q 021114 181 LVLLLISDAAQ----------------ADNYEKIFSCMKPNSILG-LSHGF 214 (317)
Q Consensus 181 vVILavP~~~~----------------~~vl~ei~~~lk~gaiVi-~~~Gv 214 (317)
+||+++|.... .++++++.++. |+++++ .+-++
T Consensus 70 vViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~~tNp~ 119 (319)
T 1a5z_A 70 VVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYA-PDSIVIVVTNPV 119 (319)
T ss_dssp EEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEECSSSH
T ss_pred EEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEeCCcH
Confidence 99999996441 33555566654 566655 34444
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.07 E-value=1.7e-05 Score=69.87 Aligned_cols=94 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH-HHHCCceecCCCcCC---HHhh-cCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGD---IYET-ISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~---~~e~-v~~ADvVILav 186 (317)
|+|.|||+|.+|..+|+.|.+. |++|++.++. ++..+. +...|+..-.+...+ +.++ ++++|+|++++
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~------g~~v~vid~~-~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~ 73 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSR------KYGVVIINKD-RELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILT 73 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHT------TCCEEEEESC-HHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence 5799999999999999999999 9988766654 333433 344554221122233 2333 78999999999
Q ss_pred CCchHHHHHHHHHhc-CCCCcEEEEec
Q 021114 187 SDAAQADNYEKIFSC-MKPNSILGLSH 212 (317)
Q Consensus 187 P~~~~~~vl~ei~~~-lk~gaiVi~~~ 212 (317)
++.....++..+... .....++.-+.
T Consensus 74 ~~d~~n~~~~~~a~~~~~~~~iia~~~ 100 (218)
T 3l4b_C 74 PRDEVNLFIAQLVMKDFGVKRVVSLVN 100 (218)
T ss_dssp SCHHHHHHHHHHHHHTSCCCEEEECCC
T ss_pred CCcHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 998776666555544 33334444333
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=98.07 E-value=8.9e-06 Score=75.74 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=61.4
Q ss_pred CEEEEEeccchHHHH-HHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
++|||||+|.||..+ +..|++. +.+++...+++.+.. +.+.+.|... ...+.+|+++ ++|+|++++|
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~~------~~~~vav~d~~~~~~~~~~~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 71 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRAT------GGEVVSMMSTSAERGAAYATENGIGK---SVTSVEELVGDPDVDAVYVSTT 71 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHHT------TCEEEEEECSCHHHHHHHHHHTTCSC---CBSCHHHHHTCTTCCEEEECSC
T ss_pred CeEEEEcccHHHHHhhhHHhhcC------CCeEEEEECCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999999998 8888765 787654445444333 3455667631 2568999986 5999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+..+.+++.+.+ +.|+.|+
T Consensus 72 ~~~h~~~~~~al---~~Gk~v~ 90 (332)
T 2glx_A 72 NELHREQTLAAI---RAGKHVL 90 (332)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hhHhHHHHHHHH---HCCCeEE
Confidence 999887766543 3466443
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.3e-06 Score=81.59 Aligned_cols=93 Identities=19% Similarity=0.198 Sum_probs=72.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| ++++|+|+|.||.++|+.|+.. |.+|++.++. ......+...|+. ..+.+++++.+|+|+.+
T Consensus 261 ~~L~G-KtVvVtGaGgIG~aiA~~Laa~------GA~Viv~D~~-~~~a~~Aa~~g~d-----v~~lee~~~~aDvVi~a 327 (488)
T 3ond_A 261 VMIAG-KVAVVAGYGDVGKGCAAALKQA------GARVIVTEID-PICALQATMEGLQ-----VLTLEDVVSEADIFVTT 327 (488)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCE-----ECCGGGTTTTCSEEEEC
T ss_pred CcccC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHhCCc-----cCCHHHHHHhcCEEEeC
Confidence 45899 9999999999999999999999 9988765543 3444566677775 45889999999999987
Q ss_pred cCCchHHHHH-HHHHhcCCCCcEEEEecCc
Q 021114 186 ISDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 186 vP~~~~~~vl-~ei~~~lk~gaiVi~~~Gv 214 (317)
..... ++ ++.+..||++.+|+.++..
T Consensus 328 tG~~~---vl~~e~l~~mk~gaiVvNaG~~ 354 (488)
T 3ond_A 328 TGNKD---IIMLDHMKKMKNNAIVCNIGHF 354 (488)
T ss_dssp SSCSC---SBCHHHHTTSCTTEEEEESSST
T ss_pred CCChh---hhhHHHHHhcCCCeEEEEcCCC
Confidence 75432 33 3577889999999987643
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=98.06 E-value=1e-05 Score=77.01 Aligned_cols=86 Identities=12% Similarity=0.140 Sum_probs=64.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~ 189 (317)
.+|||||+|.||...+..|++. .+.+++...+.+....+.+.+.|+.. +.+.+++++ +.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~l~av~d~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp~~ 76 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAA-----DNLEVHGVFDILAEKREAAAQKGLKI----YESYEAVLADEKVDAVLIATPND 76 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTS-----TTEEEEEEECSSHHHHHHHHTTTCCB----CSCHHHHHHCTTCCEEEECSCGG
T ss_pred CcEEEECcCHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHhcCCce----eCCHHHHhcCCCCCEEEEcCCcH
Confidence 5899999999999999998875 15666545555555555666677753 679999987 799999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 021114 190 AQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi 209 (317)
.+.++..+.+. .|+-|+
T Consensus 77 ~h~~~~~~al~---aGkhVl 93 (359)
T 3e18_A 77 SHKELAISALE---AGKHVV 93 (359)
T ss_dssp GHHHHHHHHHH---TTCEEE
T ss_pred HHHHHHHHHHH---CCCCEE
Confidence 98887765544 355443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.05 E-value=2.7e-06 Score=79.75 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=66.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~v~~ADvV 182 (317)
+++| +++.|||.|.||.+++..|.+. |. +|++++|+.++..+.+.+.+. ... ...++.+.++++|+|
T Consensus 138 ~l~~-~~vlVlGaGg~g~aia~~L~~~------G~~~V~v~nR~~~ka~~la~~~~~~~~~~~--~~~~~~~~~~~aDiv 208 (297)
T 2egg_A 138 TLDG-KRILVIGAGGGARGIYFSLLST------AAERIDMANRTVEKAERLVREGDERRSAYF--SLAEAETRLAEYDII 208 (297)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHTT------TCSEEEEECSSHHHHHHHHHHSCSSSCCEE--CHHHHHHTGGGCSEE
T ss_pred CCCC-CEEEEECcHHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhhhccCcee--eHHHHHhhhccCCEE
Confidence 5789 9999999999999999999998 97 888888775544455555443 110 012456778999999
Q ss_pred EEccCCchHHH----HHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~----vl~ei~~~lk~gaiVi~~~ 212 (317)
|.++|...... .+. ...++++.+++|+.
T Consensus 209 In~t~~~~~~~~~~~~i~--~~~l~~~~~v~D~~ 240 (297)
T 2egg_A 209 INTTSVGMHPRVEVQPLS--LERLRPGVIVSDII 240 (297)
T ss_dssp EECSCTTCSSCCSCCSSC--CTTCCTTCEEEECC
T ss_pred EECCCCCCCCCCCCCCCC--HHHcCCCCEEEEcC
Confidence 99999765321 011 13466777777654
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=98.03 E-value=7.8e-06 Score=77.29 Aligned_cols=80 Identities=10% Similarity=0.127 Sum_probs=59.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v--~~ADvVILavP~ 188 (317)
.+|||||+|.||..++.+|++. .+++++...+++.+.. +.+.+.|+.. ..+.+|++ .+.|+|++++|+
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~~l~~~~~D~V~i~tp~ 76 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKS-----EKLKLVTCYSRTEDKREKFGKRYNCAG----DATMEALLAREDVEMVIITVPN 76 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEECSSHHHHHHHHHHHTCCC----CSSHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhC-----CCcEEEEEECCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEEeCCh
Confidence 5899999999999999999875 1566654445444333 3445567653 67999999 679999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 77 ~~h~~~~~~al~ 88 (354)
T 3db2_A 77 DKHAEVIEQCAR 88 (354)
T ss_dssp TSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887665443
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.02 E-value=4.8e-06 Score=78.84 Aligned_cols=91 Identities=15% Similarity=0.094 Sum_probs=63.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||+|.||..++++|++.. +. +|.+++|..++..+.+.+.+ +.. . ..+.++++ ++|+|+++||
T Consensus 126 ~~v~iIGaG~~a~~~~~al~~~~-----~~~~V~v~~r~~~~a~~la~~~~~~~~~~--~-~~~~~e~v-~aDvVi~aTp 196 (322)
T 1omo_A 126 SVFGFIGCGTQAYFQLEALRRVF-----DIGEVKAYDVREKAAKKFVSYCEDRGISA--S-VQPAEEAS-RCDVLVTTTP 196 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHS-----CCCEEEEECSSHHHHHHHHHHHHHTTCCE--E-ECCHHHHT-SSSEEEECCC
T ss_pred CEEEEEcCcHHHHHHHHHHHHhC-----CccEEEEECCCHHHHHHHHHHHHhcCceE--E-ECCHHHHh-CCCEEEEeeC
Confidence 89999999999999999998740 33 56666665444333333322 111 1 45888999 9999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
... .++. .+.+++|++|.+.+.+.
T Consensus 197 ~~~--pv~~--~~~l~~G~~V~~ig~~~ 220 (322)
T 1omo_A 197 SRK--PVVK--AEWVEEGTHINAIGADG 220 (322)
T ss_dssp CSS--CCBC--GGGCCTTCEEEECSCCS
T ss_pred CCC--ceec--HHHcCCCeEEEECCCCC
Confidence 753 2222 25689999999887654
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.2e-05 Score=72.39 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=61.1
Q ss_pred CEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
++|||||+|.||..+++.|+ +. .+++++...+++.... +.+.+.|... ...+.+++++ ++|+|++++|
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~-----~~~~~vav~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~~D~V~i~tp 80 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKI-----QGVKLVAACALDSNQLEWAKNELGVET---TYTNYKDMIDTENIDAIFIVAP 80 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTC-----SSEEEEEEECSCHHHHHHHHHTTCCSE---EESCHHHHHTTSCCSEEEECSC
T ss_pred ceEEEEcCCHHHHHHHHHHHhcC-----CCcEEEEEecCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 68999999999999999998 43 1666554455544333 3344557621 1568999986 6999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+..+.++..+.+ +.|+.|+
T Consensus 81 ~~~h~~~~~~al---~~G~~v~ 99 (346)
T 3cea_A 81 TPFHPEMTIYAM---NAGLNVF 99 (346)
T ss_dssp GGGHHHHHHHHH---HTTCEEE
T ss_pred hHhHHHHHHHHH---HCCCEEE
Confidence 998887766543 3466444
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=73.67 Aligned_cols=96 Identities=17% Similarity=0.156 Sum_probs=59.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHH-HHH--HCCceec-CC--CcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EAR--AAGFTEE-NG--TLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~--~~G~~~~-~~--~~~~~~e~v~~ADvVI 183 (317)
+||+|||.|.||.++|..|... |+ +|++.++. ++..+ .+. ..+.... +. ...+..+.++++|+||
T Consensus 8 mkI~IiGaG~vG~~~a~~l~~~------g~~~~V~l~d~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vi 80 (319)
T 1lld_A 8 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIA-KERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVV 80 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSS-HHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCC-hhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEE
Confidence 8999999999999999999988 88 87666554 32222 122 2222100 00 0111246788999999
Q ss_pred EccCCchHH----------------HHHHHHHhcCCCCcEEE-EecCch
Q 021114 184 LLISDAAQA----------------DNYEKIFSCMKPNSILG-LSHGFL 215 (317)
Q Consensus 184 LavP~~~~~----------------~vl~ei~~~lk~gaiVi-~~~Gv~ 215 (317)
++++..... ++++++.++ .++++|+ ..-|+.
T Consensus 81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKV-APNAIYMLITNPVD 128 (319)
T ss_dssp ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-CTTSEEEECCSSHH
T ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCceEEEecCchH
Confidence 999543221 455566664 5677665 555664
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.98 E-value=2e-05 Score=73.25 Aligned_cols=86 Identities=15% Similarity=0.173 Sum_probs=59.2
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|||||+|.||.. ++..|++. .+++++...+++ ++..+.+.+.|+.. ..+.+++..+.|+|++++|+.
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~~~~~g~~~----~~~~~~l~~~~D~V~i~tp~~ 76 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 76 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCc----cCcHHHhhcCCCEEEEeCCch
Confidence 68999999999997 88888763 156665344443 33334455556542 457777767899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEE
Q 021114 190 AQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi 209 (317)
.+.++..+.+. .|+-|+
T Consensus 77 ~h~~~~~~al~---~G~~v~ 93 (319)
T 1tlt_A 77 SHFDVVSTLLN---AGVHVC 93 (319)
T ss_dssp HHHHHHHHHHH---TTCEEE
T ss_pred hHHHHHHHHHH---cCCeEE
Confidence 88877665443 465433
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=97.97 E-value=2e-05 Score=66.12 Aligned_cols=114 Identities=14% Similarity=0.147 Sum_probs=74.8
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
++|+|||. |.+|..++++|++. |++|+ ..... ... -.|... +.+++|+-...|+++++
T Consensus 14 ~~vaVvGas~~~g~~G~~~~~~l~~~------G~~v~-~vnp~~~~~~-----i~G~~~----~~sl~el~~~vDlavi~ 77 (140)
T 1iuk_A 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVL-PVNPRFQGEE-----LFGEEA----VASLLDLKEPVDILDVF 77 (140)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEE-EECGGGTTSE-----ETTEEC----BSSGGGCCSCCSEEEEC
T ss_pred CEEEEECCCCCCCChHHHHHHHHHHC------CCEEE-EeCCCcccCc-----CCCEEe----cCCHHHCCCCCCEEEEE
Confidence 89999999 89999999999999 99743 33322 111 136553 56888988899999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+|+....+++++..+.-- +.+++. .|+.-..+.+. .-..++++++ ||+++-....+
T Consensus 78 vp~~~~~~v~~~~~~~gi-~~i~~~-~g~~~~~~~~~--a~~~Gir~vg--pnc~g~~~~~~ 133 (140)
T 1iuk_A 78 RPPSALMDHLPEVLALRP-GLVWLQ-SGIRHPEFEKA--LKEAGIPVVA--DRCLMVEHKRL 133 (140)
T ss_dssp SCHHHHTTTHHHHHHHCC-SCEEEC-TTCCCHHHHHH--HHHTTCCEEE--SCCHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHcCC-CEEEEc-CCcCHHHHHHH--HHHcCCEEEc--CCccceEChhh
Confidence 999888888887665432 345544 44422122110 1023567664 88877664433
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=75.39 Aligned_cols=80 Identities=20% Similarity=0.238 Sum_probs=58.7
Q ss_pred CEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEecCC-cccHHHHHHCC--ceecCCCcCCHHhhcC--cCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKG-SRSFAEARAAG--FTEENGTLGDIYETIS--GSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G--~~~~~~~~~~~~e~v~--~ADvVILa 185 (317)
.+|||||+|.||...+..|+ .. .+.+++...+.+ ++..+.+.+.| ... +.+++|+++ +.|+|+++
T Consensus 24 ~rvgiIG~G~~g~~~~~~l~~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~----~~~~~~ll~~~~~D~V~i~ 94 (357)
T 3ec7_A 24 LKAGIVGIGMIGSDHLRRLANTV-----SGVEVVAVCDIVAGRAQAALDKYAIEAKD----YNDYHDLINDKDVEVVIIT 94 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTC-----TTEEEEEEECSSTTHHHHHHHHHTCCCEE----ESSHHHHHHCTTCCEEEEC
T ss_pred eeEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhCCCCee----eCCHHHHhcCCCCCEEEEc
Confidence 68999999999999999998 42 166665444444 33344556667 332 579999987 58999999
Q ss_pred cCCchHHHHHHHHHh
Q 021114 186 ISDAAQADNYEKIFS 200 (317)
Q Consensus 186 vP~~~~~~vl~ei~~ 200 (317)
+|+..+.++..+.+.
T Consensus 95 tp~~~h~~~~~~al~ 109 (357)
T 3ec7_A 95 ASNEAHADVAVAALN 109 (357)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999887765544
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=74.97 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=56.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..++..|++. .+.+++...+++ ++..+.+.+.|+.. .+.+.+|++. +.|+|++++|+
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~-----~~~~~~av~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLA-----GNGEVVAVSSRTLESAQAFANKYHLPK---AYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHH-----CSEEEEEEECSCSSTTCC---CCCCSC---EESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 6899999999999999999876 034554333433 33333455556531 2579999998 79999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 78 ~~h~~~~~~al~ 89 (329)
T 3evn_A 78 QDHYKVAKAALL 89 (329)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 998887765443
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.9e-05 Score=72.86 Aligned_cols=88 Identities=24% Similarity=0.180 Sum_probs=58.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHH-HHH----------C-CceecCCCcCCHHhhcCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA----------A-GFTEENGTLGDIYETISG 178 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~----------~-G~~~~~~~~~~~~e~v~~ 178 (317)
+||+|||.|.||.++|..|... |+ +|++.++..+ ..+. +.+ . .+.. ..+. +++++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~------g~~~V~l~D~~~~-~~~~~~~~l~~~~~~~~~~~~i~~----t~d~-~a~~~ 72 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD------NLADVVLFDIAEG-IPQGKALDITHSMVMFGSTSKVIG----TDDY-ADISG 72 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSS-HHHHHHHHHHHHHHHHTCCCCEEE----ESCG-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCCch-HHHHHHHHHHhhhhhcCCCcEEEE----CCCH-HHhCC
Confidence 7999999999999999999998 88 8766655433 2222 110 0 1211 2466 78899
Q ss_pred CCEEEEccC--------------Cch--HHHHHHHHHhcCCCCcEEEEec
Q 021114 179 SDLVLLLIS--------------DAA--QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 179 ADvVILavP--------------~~~--~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
||+||++++ .+. ..++++++.++. |+++++.++
T Consensus 73 aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~-~~~iii~~s 121 (317)
T 2ewd_A 73 SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYC-PNAFVICIT 121 (317)
T ss_dssp CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEECC
T ss_pred CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHC-CCcEEEEeC
Confidence 999999993 221 234666777765 577766443
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=74.02 Aligned_cols=81 Identities=19% Similarity=0.146 Sum_probs=54.7
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~ 189 (317)
++|||||+|.||. .+++.|++. .+.++++.++..++..+.+.+.|+.. ...+..+++ +++|+|++++|+.
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~-----~~~~l~v~d~~~~~~~~~a~~~g~~~---~~~~~~~~l~~~~D~V~i~tp~~ 74 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 74 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred cEEEEECCCHHHHHHHHHHHHhC-----CCceEEEEeCCHHHHHHHHHHcCCCc---cccCHHHHhhcCCCEEEEECCch
Confidence 5899999999998 599998764 15676644433333334455666541 123445555 7899999999999
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
.+.+++.+.+.
T Consensus 75 ~h~~~~~~al~ 85 (323)
T 1xea_A 75 VHSTLAAFFLH 85 (323)
T ss_dssp GHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 98887765443
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-06 Score=81.65 Aligned_cols=96 Identities=11% Similarity=0.094 Sum_probs=62.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|-+|.+++..|.+. |. +|++.+|+.++..+.+ .++.. ....+..++++++|+||.
T Consensus 113 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la--~~~~~--~~~~~~~~~~~~aDiVIn 181 (277)
T 3don_A 113 EGIED-AYILILGAGGASKGIANELYKI------VRPTLTVANRTMSRFNNWS--LNINK--INLSHAESHLDEFDIIIN 181 (277)
T ss_dssp TTGGG-CCEEEECCSHHHHHHHHHHHTT------CCSCCEEECSCGGGGTTCC--SCCEE--ECHHHHHHTGGGCSEEEE
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHH--Hhccc--ccHhhHHHHhcCCCEEEE
Confidence 35789 9999999999999999999998 98 7888887754332222 12221 013356677899999999
Q ss_pred ccCCchHHHHHHH-HHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEK-IFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~e-i~~~lk~gaiVi~~~ 212 (317)
+||.......-.. -...++++.+|+|+.
T Consensus 182 aTp~Gm~~~~~~~l~~~~l~~~~~V~D~v 210 (277)
T 3don_A 182 TTPAGMNGNTDSVISLNRLASHTLVSDIV 210 (277)
T ss_dssp CCC-------CCSSCCTTCCSSCEEEESC
T ss_pred CccCCCCCCCcCCCCHHHcCCCCEEEEec
Confidence 9997643221000 124577888888764
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=1.1e-06 Score=80.87 Aligned_cols=92 Identities=15% Similarity=0.054 Sum_probs=61.8
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.++| +++|||.|.||.+++..|.+. |. +|++.+|+.++..+.+.+.+... ..++.++++++|+||.+
T Consensus 106 ~~~~--~vliiGaGg~a~ai~~~L~~~------G~~~I~v~nR~~~ka~~la~~~~~~~----~~~~~~~~~~aDiVIna 173 (253)
T 3u62_A 106 EVKE--PVVVVGAGGAARAVIYALLQM------GVKDIWVVNRTIERAKALDFPVKIFS----LDQLDEVVKKAKSLFNT 173 (253)
T ss_dssp CCCS--SEEEECCSHHHHHHHHHHHHT------TCCCEEEEESCHHHHHTCCSSCEEEE----GGGHHHHHHTCSEEEEC
T ss_pred CCCC--eEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcccCC----HHHHHhhhcCCCEEEEC
Confidence 4566 799999999999999999998 88 78888876432222222222221 45677889999999999
Q ss_pred cCCchHHH--HHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQAD--NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~--vl~ei~~~lk~gaiVi~~~ 212 (317)
+|.....+ .+. .+.++++.+|+|+.
T Consensus 174 tp~gm~p~~~~i~--~~~l~~~~~V~Div 200 (253)
T 3u62_A 174 TSVGMKGEELPVS--DDSLKNLSLVYDVI 200 (253)
T ss_dssp SSTTTTSCCCSCC--HHHHTTCSEEEECS
T ss_pred CCCCCCCCCCCCC--HHHhCcCCEEEEee
Confidence 98643211 111 12356788888653
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=1.7e-05 Score=75.30 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=59.4
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.||. .++..|++. .+++++...+++ ++..+.+.+.|+.. ..+.+|+++ +.|+|++++|
T Consensus 28 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~~ll~~~~~D~V~i~tp 98 (350)
T 3rc1_A 28 IRVGVIGCADIAWRRALPALEAE-----PLTEVTAIASRRWDRAKRFTERFGGEP----VEGYPALLERDDVDAVYVPLP 98 (350)
T ss_dssp EEEEEESCCHHHHHTHHHHHHHC-----TTEEEEEEEESSHHHHHHHHHHHCSEE----EESHHHHHTCTTCSEEEECCC
T ss_pred eEEEEEcCcHHHHHHHHHHHHhC-----CCeEEEEEEcCCHHHHHHHHHHcCCCC----cCCHHHHhcCCCCCEEEECCC
Confidence 6899999999998 789998875 156665344443 33334555667764 479999986 5899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 99 ~~~h~~~~~~al~ 111 (350)
T 3rc1_A 99 AVLHAEWIDRALR 111 (350)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9999887766544
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.1e-06 Score=75.92 Aligned_cols=84 Identities=12% Similarity=0.114 Sum_probs=57.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~ 189 (317)
++|||||+|.||..+++.|++. .+++++...+++....+...+. +. ...+.+++++ ++|+|++++|+.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~-----~~~~~v~v~d~~~~~~~~~~~~-~~----~~~~~~~~l~~~~~D~V~i~tp~~ 80 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGL-----PGAALVRLASSNPDNLALVPPG-CV----IESDWRSVVSAPEVEAVIIATPPA 80 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHC-----TTEEEEEEEESCHHHHTTCCTT-CE----EESSTHHHHTCTTCCEEEEESCGG
T ss_pred ceEEEECCcHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHhh-Cc----ccCCHHHHhhCCCCCEEEEeCChH
Confidence 6899999999999999999875 0566554444443222211111 22 1468889885 799999999999
Q ss_pred hHHHHHHHHHhcCCCCcEE
Q 021114 190 AQADNYEKIFSCMKPNSIL 208 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiV 208 (317)
.+.+++.+.+ +.|+.|
T Consensus 81 ~h~~~~~~al---~~Gk~v 96 (315)
T 3c1a_A 81 THAEITLAAI---ASGKAV 96 (315)
T ss_dssp GHHHHHHHHH---HTTCEE
T ss_pred HHHHHHHHHH---HCCCcE
Confidence 9888776543 345533
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.7e-05 Score=72.75 Aligned_cols=91 Identities=14% Similarity=0.255 Sum_probs=67.9
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|+|||+ |.||..+++++++. |++++...++.... ....|+.. +.+++|+.+ +.|++++++|+
T Consensus 8 ~rVaViG~sG~~G~~~~~~l~~~------g~~~V~~V~p~~~g---~~~~G~~v----y~sl~el~~~~~~D~viI~tP~ 74 (288)
T 2nu8_A 8 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGG---TTHLGLPV----FNTVREAVAATGATASVIYVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCCCccc---ceeCCeec----cCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 88865555543110 01356653 568999887 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
..+.+++.+....= ...+|+.+.|+..
T Consensus 75 ~~~~~~~~ea~~~G-i~~iVi~t~G~~~ 101 (288)
T 2nu8_A 75 PFCKDSILEAIDAG-IKLIITITEGIPT 101 (288)
T ss_dssp GGHHHHHHHHHHTT-CSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCH
Confidence 99999888766532 2345667888854
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.85 E-value=3.9e-05 Score=71.77 Aligned_cols=86 Identities=17% Similarity=0.187 Sum_probs=56.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
.+|||||+|+||..+++.|++. .+++++...+++.... .+.|+.. ....++.+. .++|+|++++|+..+
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~-----~~~elvav~d~~~~~~---~~~g~~~--~~~~~l~~~-~~~DvViiatp~~~h 78 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREA-----PDFEIAGIVRRNPAEV---PFELQPF--RVVSDIEQL-ESVDVALVCSPSREV 78 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC-----TTEEEEEEECC----------CCTTS--CEESSGGGS-SSCCEEEECSCHHHH
T ss_pred CEEEEECChHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHH---HHcCCCc--CCHHHHHhC-CCCCEEEECCCchhh
Confidence 5899999999999999999874 1567653444443322 2255431 113455555 789999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021114 192 ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~ 211 (317)
.++..+.+ +.|..|++.
T Consensus 79 ~~~~~~al---~aG~~Vi~e 95 (304)
T 3bio_A 79 ERTALEIL---KKGICTADS 95 (304)
T ss_dssp HHHHHHHH---TTTCEEEEC
T ss_pred HHHHHHHH---HcCCeEEEC
Confidence 77666544 457777654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00013 Score=60.55 Aligned_cols=97 Identities=12% Similarity=-0.023 Sum_probs=61.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH---HHHHHCCceecCCCcCCH---Hhh-cCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDI---YET-ISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~~---~e~-v~~ADvVIL 184 (317)
++|.|+|+|.+|..+++.|.+. |++|++..+..++.. +.....|+..-.+...+. .++ ++++|+|++
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~------g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~ 77 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILA 77 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEE
Confidence 6899999999999999999998 998877666432222 222233432211222232 334 789999999
Q ss_pred ccCCchHHHHHHHHHhcC-CCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCM-KPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~l-k~gaiVi~~~Gv 214 (317)
++++......+......+ +...++..+.+.
T Consensus 78 ~~~~d~~n~~~~~~a~~~~~~~~ii~~~~~~ 108 (153)
T 1id1_A 78 LSDNDADNAFVVLSAKDMSSDVKTVLAVSDS 108 (153)
T ss_dssp CSSCHHHHHHHHHHHHHHTSSSCEEEECSSG
T ss_pred ecCChHHHHHHHHHHHHHCCCCEEEEEECCH
Confidence 999887655555544444 333455545443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.83 E-value=2.4e-05 Score=73.31 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=58.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..+++.|++. .+ .+++++...+++. +..+.+.+.|+.. .+.+.+|++. +.|+|++++|+
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~-~~--~~~~l~av~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTL-PR--SEHQVVAVAARDLSRAKEFAQKHDIPK---AYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-CT--TTEEEEEEECSSHHHHHHHHHHHTCSC---EESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhC-CC--CCeEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEECCCc
Confidence 5899999999999999999865 00 0245544444443 3334555667631 2579999987 69999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 77 ~~H~~~~~~al~ 88 (334)
T 3ohs_X 77 PQHKAAVMLCLA 88 (334)
T ss_dssp GGHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999887765544
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=4.5e-05 Score=71.40 Aligned_cols=89 Identities=20% Similarity=0.235 Sum_probs=54.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--Cc------eecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GF------TEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G~------~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|.||.++|..|... |+ +|++.++..++....+.+. +. .. ...+ .+.+++||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~------g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i---~~~~-~~a~~~aDv 70 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLR------GSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRV---WHGG-HSELADAQV 70 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEE---EEEC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEE---EECC-HHHhCCCCE
Confidence 5899999999999999999888 87 7766555422111122221 11 11 0124 467899999
Q ss_pred EEEccCCchH----------------HHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQ----------------ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~----------------~~vl~ei~~~lk~gaiVi~~ 211 (317)
||++++.... .++++++.++ .|+++++.+
T Consensus 71 VIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~~~vi~~ 115 (304)
T 2v6b_A 71 VILTAGANQKPGESRLDLLEKNADIFRELVPQITRA-APDAVLLVT 115 (304)
T ss_dssp EEECC------------CHHHHHHHHHHHHHHHHHH-CSSSEEEEC
T ss_pred EEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHh-CCCeEEEEe
Confidence 9999954331 2344556665 577776643
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.82 E-value=2.4e-05 Score=75.85 Aligned_cols=72 Identities=17% Similarity=0.118 Sum_probs=51.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVIL 184 (317)
.+|+| ++|+|+|+|+||..+|+.|.+. |++|++.++..++..+.+.+.|.. ..+.++++. +||+++.
T Consensus 169 ~~L~G-ktV~V~G~G~VG~~~A~~L~~~------GakVvv~D~~~~~l~~~a~~~ga~-----~v~~~~ll~~~~DIvip 236 (364)
T 1leh_A 169 DSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVNKAAVSAAVAEEGAD-----AVAPNAIYGVTCDIFAP 236 (364)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHHHHHHHHHCCE-----ECCGGGTTTCCCSEEEE
T ss_pred cCCCc-CEEEEECchHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCE-----EEChHHHhccCCcEeec
Confidence 37999 9999999999999999999999 999875554322222344444654 235556655 8999998
Q ss_pred ccCCc
Q 021114 185 LISDA 189 (317)
Q Consensus 185 avP~~ 189 (317)
|....
T Consensus 237 ~a~~~ 241 (364)
T 1leh_A 237 CALGA 241 (364)
T ss_dssp CSCSC
T ss_pred cchHH
Confidence 75433
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.1e-05 Score=71.65 Aligned_cols=92 Identities=14% Similarity=0.233 Sum_probs=70.1
Q ss_pred CEEEEE-ec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVI-GW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGII-G~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
++++|| |. |++|..++++|++. |+++++..++.... ..-.|+.. +.+++|+.+ ..|++++++|
T Consensus 14 ~siaVV~Gasg~~G~~~~~~l~~~------G~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~vD~avI~vP 80 (305)
T 2fp4_A 14 NTKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGG---KTHLGLPV----FNTVKEAKEQTGATASVIYVP 80 (305)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHHCCCEEEECCC
T ss_pred CcEEEEECCCCCHHHHHHHHHHHC------CCcEEEEeCCCcCc---ceECCeee----echHHHhhhcCCCCEEEEecC
Confidence 889999 98 99999999999999 99865566553210 01256664 568999888 8999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhh
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~ 217 (317)
+..+.+++++..+. .-..+|+.+.|+...
T Consensus 81 ~~~~~~~~~e~i~~-Gi~~iv~~t~G~~~~ 109 (305)
T 2fp4_A 81 PPFAAAAINEAIDA-EVPLVVCITEGIPQQ 109 (305)
T ss_dssp HHHHHHHHHHHHHT-TCSEEEECCCCCCHH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCChH
Confidence 99999999876553 234567889998653
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.80 E-value=4.6e-05 Score=71.53 Aligned_cols=85 Identities=16% Similarity=0.220 Sum_probs=58.7
Q ss_pred cCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcC--cCCEEE
Q 021114 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVL 183 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVI 183 (317)
++.|.||||||+|.||.. .+..+++. .+.+++...+++ ++..+.+.+.|+.. .+.|.+|+++ +.|+|+
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~-----~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~ 91 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDA-----ENCVVTAIASRDLTRAREMADRFSVPH---AFGSYEEMLASDVIDAVY 91 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHC-----SSEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCSSCSEEE
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhC-----CCeEEEEEECCCHHHHHHHHHHcCCCe---eeCCHHHHhcCCCCCEEE
Confidence 345579999999999986 46666654 145655444444 34445666777642 2579999984 589999
Q ss_pred EccCCchHHHHHHHHHh
Q 021114 184 LLISDAAQADNYEKIFS 200 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~ 200 (317)
+++|+..+.++..+.+.
T Consensus 92 I~tP~~~H~~~~~~al~ 108 (350)
T 4had_A 92 IPLPTSQHIEWSIKAAD 108 (350)
T ss_dssp ECSCGGGHHHHHHHHHH
T ss_pred EeCCCchhHHHHHHHHh
Confidence 99999999887765544
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=97.79 E-value=2.4e-05 Score=73.75 Aligned_cols=85 Identities=9% Similarity=0.167 Sum_probs=57.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
.+|+|||+|+||..+++.+.+. .+++++...+++... +.+ .|+.. ..++++++.++|+|++++|+..+
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~-----~~~elvav~d~~~~~-~~~--~gv~~----~~d~~~ll~~~DvViiatp~~~h 71 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL-DTK--TPVFD----VADVDKHADDVDVLFLCMGSATD 71 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC-SSS--SCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred CEEEEEeecHHHHHHHHHHhcC-----CCCEEEEEEcCCHHH-hhc--CCCce----eCCHHHHhcCCCEEEEcCCcHHH
Confidence 5899999999999999999875 145654444443222 111 45442 45778888899999999999877
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021114 192 ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~ 211 (317)
.+.+.. .++.|..+++.
T Consensus 72 ~~~~~~---al~aG~~Vv~e 88 (320)
T 1f06_A 72 IPEQAP---KFAQFACTVDT 88 (320)
T ss_dssp HHHHHH---HHTTTSEEECC
T ss_pred HHHHHH---HHHCCCEEEEC
Confidence 554443 34557766643
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=3.8e-05 Score=71.87 Aligned_cols=91 Identities=15% Similarity=0.242 Sum_probs=68.9
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
++|+|+|. |.||..+++++++. |++++...++.... ..-.|+.. +.+++|+.+ ++|++++++|+
T Consensus 8 ~~VaVvGasG~~G~~~~~~l~~~------g~~~v~~VnP~~~g---~~i~G~~v----y~sl~el~~~~~~Dv~Ii~vp~ 74 (288)
T 1oi7_A 8 TRVLVQGITGREGQFHTKQMLTY------GTKIVAGVTPGKGG---MEVLGVPV----YDTVKEAVAHHEVDASIIFVPA 74 (288)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT---CEETTEEE----ESSHHHHHHHSCCSEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHHc------CCeEEEEECCCCCC---ceECCEEe----eCCHHHHhhcCCCCEEEEecCH
Confidence 78999998 99999999999998 99865565543210 01246654 568999888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+++++..+. .-..+|+.+.|+..
T Consensus 75 ~~~~~~~~ea~~~-Gi~~vVi~t~G~~~ 101 (288)
T 1oi7_A 75 PAAADAALEAAHA-GIPLIVLITEGIPT 101 (288)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999988876653 22446777889854
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.78 E-value=8.3e-05 Score=65.95 Aligned_cols=94 Identities=12% Similarity=0.204 Sum_probs=63.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-v~~ADvVILavP 187 (317)
++|.|+|+|.+|..+++.|.+. |+ |++.. ++++..+.+. .|+..-.+...+.+ ++ ++++|.|+++++
T Consensus 10 ~~viI~G~G~~G~~la~~L~~~------g~-v~vid-~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (234)
T 2aef_A 10 RHVVICGWSESTLECLRELRGS------EV-FVLAE-DENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLE 80 (234)
T ss_dssp CEEEEESCCHHHHHHHHHSTTS------EE-EEEES-CGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCChHHHHHHHHHHhC------Ce-EEEEE-CCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCC
Confidence 7899999999999999999988 88 65554 4444455554 66432112233333 33 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPN-SILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~g-aiVi~~~Gv 214 (317)
+......+...+..+.++ .++..+..-
T Consensus 81 ~d~~n~~~~~~a~~~~~~~~iia~~~~~ 108 (234)
T 2aef_A 81 SDSETIHCILGIRKIDESVRIIAEAERY 108 (234)
T ss_dssp CHHHHHHHHHHHHHHCSSSEEEEECSSG
T ss_pred CcHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 886655555555556666 566666554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.78 E-value=7.9e-06 Score=76.33 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=64.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~v~~ADv 181 (317)
.+++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+.+.+- .. ..+.+++.+++|+
T Consensus 122 ~~l~~-k~vlvlGaGg~g~aia~~L~~~------G~~~v~v~~R~~~~a~~la~~~~~~~~~~----~~~~~~l~~~aDi 190 (281)
T 3o8q_A 122 VLLKG-ATILLIGAGGAARGVLKPLLDQ------QPASITVTNRTFAKAEQLAELVAAYGEVK----AQAFEQLKQSYDV 190 (281)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHTT------CCSEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCSCEEE
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHhc------CCCeEEEEECCHHHHHHHHHHhhccCCee----EeeHHHhcCCCCE
Confidence 45789 9999999999999999999998 96 888888875544444444321 11 2355666689999
Q ss_pred EEEccCCchHHHH--HHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADN--YEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~v--l~ei~~~lk~gaiVi~~~ 212 (317)
||.+||.....+. +. ...++++.+|+|+.
T Consensus 191 IInaTp~gm~~~~~~l~--~~~l~~~~~V~Dlv 221 (281)
T 3o8q_A 191 IINSTSASLDGELPAID--PVIFSSRSVCYDMM 221 (281)
T ss_dssp EEECSCCCC----CSCC--GGGEEEEEEEEESC
T ss_pred EEEcCcCCCCCCCCCCC--HHHhCcCCEEEEec
Confidence 9999998754321 11 13456666777654
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0001 Score=69.00 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=59.9
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEE-EecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Viv-g~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.+|. .++..|+.. +.+++. +++..++..+.+.+.+... .+.+.+++++ +.|+|++++|
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~------~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~~D~V~i~tp 75 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDA------GAELAGVFESDSDNRAKFTSLFPSVP---FAASAEQLITDASIDLIACAVI 75 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHT------TCEEEEEECSCTTSCHHHHHHSTTCC---BCSCHHHHHTCTTCCEEEECSC
T ss_pred cEEEEECCChHHHHHhhhhhcCC------CcEEEEEeCCCHHHHHHHHHhcCCCc---ccCCHHHHhhCCCCCEEEEeCC
Confidence 6899999999996 678888665 777654 4444444445566664321 2579999986 6899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEE
Q 021114 188 DAAQADNYEKIFSCMKPNSIL 208 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiV 208 (317)
+..+.++..+.+. .|+-|
T Consensus 76 ~~~h~~~~~~al~---aGkhV 93 (336)
T 2p2s_A 76 PCDRAELALRTLD---AGKDF 93 (336)
T ss_dssp GGGHHHHHHHHHH---TTCEE
T ss_pred hhhHHHHHHHHHH---CCCcE
Confidence 9998876665443 45533
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.74 E-value=7.2e-05 Score=70.82 Aligned_cols=90 Identities=12% Similarity=0.126 Sum_probs=61.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|||||+|.||..+++.|+.. .+++++...+++. +..+.+.+.|+........+.+++++ +.|+|++++|+
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~-----~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 81 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLA-----PNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 81 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-----TTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEECchHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCCh
Confidence 6899999999999999998874 0456544444443 33344556674100012568999986 59999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE
Q 021114 189 AAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi 209 (317)
..+.++..+. ++.|+.|+
T Consensus 82 ~~h~~~~~~a---l~aGk~V~ 99 (362)
T 1ydw_A 82 SLHVEWAIKA---AEKGKHIL 99 (362)
T ss_dssp GGHHHHHHHH---HTTTCEEE
T ss_pred HHHHHHHHHH---HHCCCeEE
Confidence 9988776654 34566544
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00017 Score=68.48 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=59.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHH-HHH-------CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA-------AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~-------~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|||.|.+|.++|..|... |+ +|.+.++.. +..+. +.. .+....-....++++++++||+|
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~------g~~~V~L~D~~~-~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiV 82 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVK-GMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCV 82 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSS-SHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCh-hHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEE
Confidence 7999999999999999999998 87 866555543 22222 111 11110000126888899999999
Q ss_pred EEcc--CCch-------------------HHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLI--SDAA-------------------QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILav--P~~~-------------------~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+++ |... ..++++++.++. |+++++.++
T Consensus 83 i~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~~t 132 (331)
T 1pzg_A 83 IVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIVVT 132 (331)
T ss_dssp EECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEECC
T ss_pred EEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEc
Confidence 9998 5321 123445565554 777776553
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00016 Score=68.50 Aligned_cols=88 Identities=19% Similarity=0.119 Sum_probs=56.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHH-HHH----------CCceecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-ARA----------AGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~~----------~G~~~~~~~~~~~~e~v~~A 179 (317)
+||+|||.|.||.++|..|... |+ +|++.+.. ++..+. +.. ..-+. ...+. +++++|
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~------g~~~V~L~Di~-~~~l~~~~~~l~~~~~~~~~~~~i~---~t~d~-~al~~a 83 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQK------DLGDVYMFDII-EGVPQGKALDLNHCMALIGSPAKIF---GENNY-EYLQNS 83 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSS-TTHHHHHHHHHHHHHHHHTCCCCEE---EESCG-GGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECC-HHHHHHHHHHHHhHhhccCCCCEEE---ECCCH-HHHCCC
Confidence 6999999999999999999988 88 86655544 322221 111 11111 12466 789999
Q ss_pred CEEEEcc--CCc-------------h-HHHHHHHHHhcCCCCcEEEEe
Q 021114 180 DLVLLLI--SDA-------------A-QADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 180 DvVILav--P~~-------------~-~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|+||+++ |.. . ..++++++.++. |+++++++
T Consensus 84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~ 130 (328)
T 2hjr_A 84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI 130 (328)
T ss_dssp SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC
T ss_pred CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe
Confidence 9999998 431 1 123445565554 77776654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.70 E-value=3.6e-05 Score=70.70 Aligned_cols=94 Identities=21% Similarity=0.095 Sum_probs=61.9
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhc-CcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETI-SGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~v-~~ADvV 182 (317)
.++| +++.|+|.|.||.++++.|.+. |.+|++.+|+.++..+.+.+.+. .. ..+.+++. .++|+|
T Consensus 116 ~l~~-k~vlViGaGg~g~a~a~~L~~~------G~~V~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~Div 184 (271)
T 1nyt_A 116 IRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDLI 184 (271)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHc------CCEEEEEECCHHHHHHHHHHhhccCCee----EecHHHhccCCCCEE
Confidence 5789 9999999999999999999999 98888887764443344444332 11 12334443 589999
Q ss_pred EEccCCchHHHHHHHH-HhcCCCCcEEEEec
Q 021114 183 LLLISDAAQADNYEKI-FSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~vl~ei-~~~lk~gaiVi~~~ 212 (317)
|.++|.....++ ..+ ...++++.+++|+.
T Consensus 185 Vn~t~~~~~~~~-~~i~~~~l~~~~~v~D~~ 214 (271)
T 1nyt_A 185 INATSSGISGDI-PAIPSSLIHPGIYCYDMF 214 (271)
T ss_dssp EECCSCGGGTCC-CCCCGGGCCTTCEEEESC
T ss_pred EECCCCCCCCCC-CCCCHHHcCCCCEEEEec
Confidence 999997654211 001 12245666666543
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0002 Score=67.14 Aligned_cols=72 Identities=18% Similarity=0.096 Sum_probs=45.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH--HCCc-----eecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--AAGF-----TEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~--~~G~-----~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|||+|||.|.||.++|..|... +.|++|++.++..++....+. ..+. ...-....+.++ +++||+||+
T Consensus 1 mkI~VIGaG~vG~~la~~la~~----~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvVii 75 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEK----QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVII 75 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT----TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC----CCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEE
Confidence 5899999999999999998874 126777666654332221211 1110 000001246666 899999999
Q ss_pred ccCC
Q 021114 185 LISD 188 (317)
Q Consensus 185 avP~ 188 (317)
++|.
T Consensus 76 av~~ 79 (310)
T 1guz_A 76 TAGL 79 (310)
T ss_dssp CCSC
T ss_pred eCCC
Confidence 9974
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.7e-05 Score=73.94 Aligned_cols=91 Identities=16% Similarity=0.030 Sum_probs=63.4
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
+.| +++.|||.|-+|.+++..|.+. |.+|.+.+|+.++..+.+ +.|+.. .+.+++ .++|+||.++|
T Consensus 116 ~~~-k~vlvlGaGGaaraia~~L~~~------G~~v~V~nRt~~ka~~la-~~~~~~-----~~~~~l-~~~DiVInaTp 181 (269)
T 3phh_A 116 KNY-QNALILGAGGSAKALACELKKQ------GLQVSVLNRSSRGLDFFQ-RLGCDC-----FMEPPK-SAFDLIINATS 181 (269)
T ss_dssp --C-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCTTHHHHH-HHTCEE-----ESSCCS-SCCSEEEECCT
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHH-HCCCeE-----ecHHHh-ccCCEEEEccc
Confidence 337 9999999999999999999999 888888888876665666 666542 233343 38999999999
Q ss_pred CchHHH-HHH-H-HHhcCCCCcEEEEec
Q 021114 188 DAAQAD-NYE-K-IFSCMKPNSILGLSH 212 (317)
Q Consensus 188 ~~~~~~-vl~-e-i~~~lk~gaiVi~~~ 212 (317)
.....+ .+. + +.+.++++.+|+|+.
T Consensus 182 ~Gm~~~~~l~~~~l~~~l~~~~~v~D~v 209 (269)
T 3phh_A 182 ASLHNELPLNKEVLKGYFKEGKLAYDLA 209 (269)
T ss_dssp TCCCCSCSSCHHHHHHHHHHCSEEEESC
T ss_pred CCCCCCCCCChHHHHhhCCCCCEEEEeC
Confidence 763221 121 1 222455677888754
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.67 E-value=1.5e-05 Score=73.46 Aligned_cols=75 Identities=13% Similarity=0.011 Sum_probs=52.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcC-cCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETIS-GSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~v~-~ADvV 182 (317)
.++| +++.|||.|.||.+++..|.+. |.+|++++|+.++..+.+.+.+. .. ..+.+++.+ ++|+|
T Consensus 116 ~~~~-~~vlvlGaGg~g~a~a~~L~~~------G~~v~v~~R~~~~a~~l~~~~~~~~~~~----~~~~~~~~~~~~Div 184 (272)
T 1p77_A 116 LRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQ----AVSMDSIPLQTYDLV 184 (272)
T ss_dssp CCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEE----EEEGGGCCCSCCSEE
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHccccCCeE----EeeHHHhccCCCCEE
Confidence 5788 9999999999999999999998 88888888875443344433221 11 123444434 89999
Q ss_pred EEccCCchHH
Q 021114 183 LLLISDAAQA 192 (317)
Q Consensus 183 ILavP~~~~~ 192 (317)
|.++|.....
T Consensus 185 In~t~~~~~~ 194 (272)
T 1p77_A 185 INATSAGLSG 194 (272)
T ss_dssp EECCCC----
T ss_pred EECCCCCCCC
Confidence 9999987653
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.64 E-value=7.9e-05 Score=69.83 Aligned_cols=75 Identities=16% Similarity=0.186 Sum_probs=60.8
Q ss_pred cCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 108 l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++| +++.|||.|. +|..+|+.|... |..|++..++ ..++++.+++||+||.++
T Consensus 148 l~G-k~vvVvG~s~iVG~plA~lL~~~------gAtVtv~~~~-------------------t~~L~~~~~~ADIVI~Av 201 (276)
T 3ngx_A 148 YHE-NTVTIVNRSPVVGRPLSMMLLNR------NYTVSVCHSK-------------------TKDIGSMTRSSKIVVVAV 201 (276)
T ss_dssp CCS-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHHSSEEEECS
T ss_pred cCC-CEEEEEcCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------cccHHHhhccCCEEEECC
Confidence 899 9999999985 899999999998 9988776542 137889999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+-.. ++. .+++|+|++|+|++-
T Consensus 202 g~p~---~I~--~~~vk~GavVIDvgi 223 (276)
T 3ngx_A 202 GRPG---FLN--REMVTPGSVVIDVGI 223 (276)
T ss_dssp SCTT---CBC--GGGCCTTCEEEECCC
T ss_pred CCCc---ccc--HhhccCCcEEEEecc
Confidence 8533 222 245799999999874
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=69.28 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| +++.|||.|. +|..+|+.|... |..|++..++ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 210 (285)
T 3l07_A 157 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 210 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHhcccCCEEEE
Confidence 57899 9999999987 699999999998 9888776532 1378899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++-.. ++. .+++|+|++|+|++-
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvgi 234 (285)
T 3l07_A 211 AVGKPN---FIT--ADMVKEGAVVIDVGI 234 (285)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred CCCCCC---CCC--HHHcCCCcEEEEecc
Confidence 998432 222 245799999999873
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00011 Score=69.27 Aligned_cols=78 Identities=18% Similarity=0.102 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|. +|..+|+.|... |..|++..++ ..++++.+++||+||.
T Consensus 156 i~l~G-k~vvVvGrs~iVG~p~A~lL~~~------gAtVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (285)
T 3p2o_A 156 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 209 (285)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhhcCCEEEE
Confidence 57899 9999999987 699999999998 9888776542 1378899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++-... +. .+.+|+|++|+|++--
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVgi~ 234 (285)
T 3p2o_A 210 AAGCVNL---LR--SDMVKEGVIVVDVGIN 234 (285)
T ss_dssp CSSCTTC---BC--GGGSCTTEEEEECCCE
T ss_pred CCCCCCc---CC--HHHcCCCeEEEEeccC
Confidence 9985322 22 2457999999998743
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.9e-05 Score=75.43 Aligned_cols=96 Identities=13% Similarity=0.078 Sum_probs=64.9
Q ss_pred ccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC----c--CCHHhhcCcC
Q 021114 107 AFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----L--GDIYETISGS 179 (317)
Q Consensus 107 ~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~----~--~~~~e~v~~A 179 (317)
+++| +++.|||.|.| |..+|+.|... |..|++.+|+..+.++.+.+.+......+ . .++++.+++|
T Consensus 174 ~l~g-k~vvVIG~G~iVG~~~A~~L~~~------gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~A 246 (320)
T 1edz_A 174 RLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDS 246 (320)
T ss_dssp TTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred CCCC-CEEEEECCCcchHHHHHHHHHHC------CCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccC
Confidence 7899 99999999976 99999999998 88888886653222222222221000000 1 3688999999
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+||.+++-... ++. .+.+|+|++|+|++-
T Consensus 247 DIVIsAtg~p~~--vI~--~e~vk~GavVIDVgi 276 (320)
T 1edz_A 247 DVVITGVPSENY--KFP--TEYIKEGAVCINFAC 276 (320)
T ss_dssp SEEEECCCCTTC--CBC--TTTSCTTEEEEECSS
T ss_pred CEEEECCCCCcc--eeC--HHHcCCCeEEEEcCC
Confidence 999999985321 121 133689999998875
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.61 E-value=3.9e-05 Score=71.31 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=62.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCc--eecCCCcCCHHhhc-CcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF--TEENGTLGDIYETI-SGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~--~~~~~~~~~~~e~v-~~ADv 181 (317)
.+++| +++.|+|.|-+|.+++..|.+. |. +|++.+|+.++..+.+.+.+. .. ..+.+++- .++|+
T Consensus 116 ~~l~~-k~~lvlGaGg~~~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~----~~~~~~l~~~~~Di 184 (272)
T 3pwz_A 116 EPLRN-RRVLLLGAGGAVRGALLPFLQA------GPSELVIANRDMAKALALRNELDHSRLR----ISRYEALEGQSFDI 184 (272)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------CCSEEEEECSCHHHHHHHHHHHCCTTEE----EECSGGGTTCCCSE
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhccCCee----EeeHHHhcccCCCE
Confidence 35788 9999999999999999999998 96 788888875554445544331 11 12333332 78999
Q ss_pred EEEccCCchHHH--HHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQAD--NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~--vl~ei~~~lk~gaiVi~~~ 212 (317)
||.+||.....+ .+. .+.++++.+|+|+.
T Consensus 185 vInaTp~gm~~~~~~i~--~~~l~~~~~V~Dlv 215 (272)
T 3pwz_A 185 VVNATSASLTADLPPLP--ADVLGEAALAYELA 215 (272)
T ss_dssp EEECSSGGGGTCCCCCC--GGGGTTCSEEEESS
T ss_pred EEECCCCCCCCCCCCCC--HHHhCcCCEEEEee
Confidence 999999765321 111 13356666766653
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00015 Score=67.89 Aligned_cols=81 Identities=10% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc----------CcC
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI----------SGS 179 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v----------~~A 179 (317)
+.+|||||+ |.||...+..+++. +.+++...+.+......+...+... ...+.++++ ++.
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~---~~~~~~~ll~~~~~l~~~~~~v 73 (312)
T 3o9z_A 3 MTRFALTGLAGYIAPRHLKAIKEV------GGVLVASLDPATNVGLVDSFFPEAE---FFTEPEAFEAYLEDLRDRGEGV 73 (312)
T ss_dssp CCEEEEECTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE---EESCHHHHHHHHHHHHHTTCCC
T ss_pred ceEEEEECCChHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc---eeCCHHHHHHHhhhhcccCCCC
Confidence 479999999 78999999999987 7776555555443322222222211 256888887 679
Q ss_pred CEEEEccCCchHHHHHHHHHh
Q 021114 180 DLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~ 200 (317)
|+|++++|+..+.++..+.+.
T Consensus 74 D~V~I~tP~~~H~~~~~~al~ 94 (312)
T 3o9z_A 74 DYLSIASPNHLHYPQIRMALR 94 (312)
T ss_dssp SEEEECSCGGGHHHHHHHHHH
T ss_pred cEEEECCCchhhHHHHHHHHH
Confidence 999999999999887766544
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.60 E-value=9.8e-05 Score=71.07 Aligned_cols=82 Identities=12% Similarity=0.108 Sum_probs=59.8
Q ss_pred CEEEEEeccc---hHHHHHHHHHhhhhhhcCC-ceEEE-EecCC-cccHHHHHHCCceecCCCcCCHHhhcCc-------
Q 021114 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV-GLRKG-SRSFAEARAAGFTEENGTLGDIYETISG------- 178 (317)
Q Consensus 112 kkIGIIG~G~---mG~AiA~~Lr~~~~~~~~G-~~Viv-g~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~------- 178 (317)
.+|||||+|. ||...+..++.. + ++++. ..+++ ++..+.+.+.|+.. ...+.+.+|++++
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 85 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRD------NTFVLVAGAFDIDPIRGSAFGEQLGVDS-ERCYADYLSMFEQEARRADG 85 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGG------GSEEEEEEECCSSHHHHHHHHHHTTCCG-GGBCSSHHHHHHHHTTCTTC
T ss_pred ceEEEEcCCccchhHHHHHHHHhhC------CCeEEEEEEeCCCHHHHHHHHHHhCCCc-ceeeCCHHHHHhcccccCCC
Confidence 5899999999 999999988776 4 56553 23443 33445566778731 0136799999865
Q ss_pred CCEEEEccCCchHHHHHHHHHh
Q 021114 179 SDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~ 200 (317)
.|+|++++|+..+.++..+.+.
T Consensus 86 vD~V~i~tp~~~H~~~~~~al~ 107 (398)
T 3dty_A 86 IQAVSIATPNGTHYSITKAALE 107 (398)
T ss_dssp CSEEEEESCGGGHHHHHHHHHH
T ss_pred CCEEEECCCcHHHHHHHHHHHH
Confidence 9999999999999887765544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.60 E-value=8.9e-05 Score=70.23 Aligned_cols=77 Identities=13% Similarity=0.112 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH--hhcCcCCEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~--e~v~~ADvV 182 (317)
.+++| +++.|||.|. +|.++|+.|... |..|++..++. .+++ +.+++||+|
T Consensus 161 i~l~G-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~~~~T-------------------~~l~l~~~~~~ADIV 214 (300)
T 4a26_A 161 IEMAG-KRAVVLGRSNIVGAPVAALLMKE------NATVTIVHSGT-------------------STEDMIDYLRTADIV 214 (300)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTTS-------------------CHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCeEEEEeCCC-------------------CCchhhhhhccCCEE
Confidence 57899 9999999887 799999999999 99888776531 1345 889999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|.+++-.. ++. .+++|+|++|+|++-
T Consensus 215 I~Avg~p~---~I~--~~~vk~GavVIDvgi 240 (300)
T 4a26_A 215 IAAMGQPG---YVK--GEWIKEGAAVVDVGT 240 (300)
T ss_dssp EECSCCTT---CBC--GGGSCTTCEEEECCC
T ss_pred EECCCCCC---CCc--HHhcCCCcEEEEEec
Confidence 99999532 222 245799999999874
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.59 E-value=7.2e-05 Score=71.77 Aligned_cols=80 Identities=13% Similarity=0.167 Sum_probs=59.5
Q ss_pred CEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
.+|||||+| .||..++.+|++. .+.+++...+.+.. ..+.+.+.|+.. +.+.+|++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~g~~~----~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHH-----PDAQIVAACDPNEDVRERFGKEYGIPV----FATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHC-----TTEEEEEEECSCHHHHHHHHHHHTCCE----ESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhC-----CCeEEEEEEeCCHHHHHHHHHHcCCCe----ECCHHHHHcCCCCCEEEEcCC
Confidence 689999999 9999999999875 15666544555433 334455667753 6799999874 999999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 74 ~~~H~~~~~~al~ 86 (387)
T 3moi_A 74 HQFHCEHVVQASE 86 (387)
T ss_dssp GGGHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9998887765544
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00022 Score=65.28 Aligned_cols=152 Identities=12% Similarity=0.074 Sum_probs=88.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+||+|+|+|.||..+++.+.+. +.+++...+++.. ...|+.. ..++++++ ++|+||-.+.|+.
T Consensus 3 MmkI~ViGaGrMG~~i~~~l~~~------~~eLva~~d~~~~-----~~~gv~v----~~dl~~l~-~~DVvIDft~p~a 66 (243)
T 3qy9_A 3 SMKILLIGYGAMNQRVARLAEEK------GHEIVGVIENTPK-----ATTPYQQ----YQHIADVK-GADVAIDFSNPNL 66 (243)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEECSSCC-------CCSCB----CSCTTTCT-TCSEEEECSCHHH
T ss_pred ceEEEEECcCHHHHHHHHHHHhC------CCEEEEEEecCcc-----ccCCCce----eCCHHHHh-CCCEEEEeCChHH
Confidence 47999999999999999999887 5555444554332 1356653 46788888 9999997777666
Q ss_pred HHHHHHHHHhcCCCCcE-EEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhh-cccccCCCceEEEEec
Q 021114 191 QADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQ-GKEINGAGINSSFAVH 266 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gai-Vi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~-G~e~~g~G~~~iitp~ 266 (317)
..+.++ ++.|.- |+-+.|+....++..... .+.+.+ -..||..--. +-.+-+. .+-..+..+ -|+--|
T Consensus 67 ~~~~~~-----l~~g~~vVigTTG~s~e~~~~l~~a-a~~~~v-~~a~N~S~Gv~l~~~~~~~aa~~l~~~di-eI~E~H 138 (243)
T 3qy9_A 67 LFPLLD-----EDFHLPLVVATTGEKEKLLNKLDEL-SQNMPV-FFSANMSYGVHALTKILAAAVPLLDDFDI-ELTEAH 138 (243)
T ss_dssp HHHHHT-----SCCCCCEEECCCSSHHHHHHHHHHH-TTTSEE-EECSSCCHHHHHHHHHHHHHHHHTTTSEE-EEEEEE
T ss_pred HHHHHH-----HhcCCceEeCCCCCCHHHHHHHHHH-HhcCCE-EEECCccHHHHHHHHHHHHHHHhcCCCCE-EEEEcC
Confidence 555443 566654 445568754322211112 234444 6778775432 0011110 000111112 223344
Q ss_pred c----C-CCHHHHHHHHHHHHHcCCC
Q 021114 267 Q----D-VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 267 ~----d-~~~ea~e~a~~l~~alG~~ 287 (317)
. | +++.++.+++.+ +.+|..
T Consensus 139 H~~K~DaPSGTA~~la~~i-~~~~~~ 163 (243)
T 3qy9_A 139 HNKKVDAPSGTLEKLYDVI-VSLKEN 163 (243)
T ss_dssp CTTCCSSSCHHHHHHHHHH-HHHSTT
T ss_pred CCCCCCCCCHHHHHHHHHH-HhcCcc
Confidence 4 2 668999999999 998853
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00017 Score=67.91 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=45.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCCceecCCC-------cCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGT-------LGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G~~~~~~~-------~~~~~e~v~~ADvV 182 (317)
+||+|||.|+||.++|..|+.. |. ++++ .+.+++ ..++...++.+.... ..+..+++++||+|
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~------~~~~ev~l-~Di~~~-~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvV 78 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ------GIADEIVL-IDANES-KAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLV 78 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEE-ECSSHH-HHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEE-EeCCcc-hHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEE
Confidence 7999999999999999999887 64 5544 444433 222222222110000 02345779999999
Q ss_pred EEccCCch
Q 021114 183 LLLISDAA 190 (317)
Q Consensus 183 ILavP~~~ 190 (317)
|++.+...
T Consensus 79 iia~~~~~ 86 (316)
T 1ldn_A 79 VICAGANQ 86 (316)
T ss_dssp EECCSCCC
T ss_pred EEcCCCCC
Confidence 99977543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00016 Score=67.79 Aligned_cols=80 Identities=9% Similarity=0.069 Sum_probs=57.3
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhc-----------C
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETI-----------S 177 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v-----------~ 177 (317)
+.+|||||+ |.||...+..+++. +.+++...+.+......+... +.. .+.+.++++ +
T Consensus 3 mirvgiIG~gG~i~~~h~~~l~~~------~~~lvav~d~~~~~~~~~~~~~~~~----~~~~~~~ll~~~~~l~~~~~~ 72 (318)
T 3oa2_A 3 MKNFALIGAAGYIAPRHMRAIKDT------GNCLVSAYDINDSVGIIDSISPQSE----FFTEFEFFLDHASNLKRDSAT 72 (318)
T ss_dssp CCEEEEETTTSSSHHHHHHHHHHT------TCEEEEEECSSCCCGGGGGTCTTCE----EESSHHHHHHHHHHHTTSTTT
T ss_pred ceEEEEECCCcHHHHHHHHHHHhC------CCEEEEEEcCCHHHHHHHhhCCCCc----EECCHHHHHHhhhhhhhccCC
Confidence 479999999 79999999999987 777655555543322222222 222 256888876 6
Q ss_pred cCCEEEEccCCchHHHHHHHHHh
Q 021114 178 GSDLVLLLISDAAQADNYEKIFS 200 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~ 200 (317)
+.|+|++++|+..+.++..+.+.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~ 95 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLR 95 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHH
Confidence 79999999999999887766544
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00014 Score=68.36 Aligned_cols=78 Identities=21% Similarity=0.135 Sum_probs=61.9
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|. .|.++|+.|... |..|++..++ ..++++.+++||+||.
T Consensus 157 i~l~G-k~vvVvGrs~iVG~plA~lL~~~------gAtVtv~hs~-------------------T~~L~~~~~~ADIVI~ 210 (286)
T 4a5o_A 157 ADLYG-MDAVVVGASNIVGRPMALELLLG------GCTVTVTHRF-------------------TRDLADHVSRADLVVV 210 (286)
T ss_dssp CCCTT-CEEEEECTTSTTHHHHHHHHHHT------TCEEEEECTT-------------------CSCHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------CcCHHHHhccCCEEEE
Confidence 57899 9999999886 799999999998 9888776432 1267889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++-.. ++. .+++|+|++|+|++-.
T Consensus 211 Avg~p~---~I~--~~~vk~GavVIDvgi~ 235 (286)
T 4a5o_A 211 AAGKPG---LVK--GEWIKEGAIVIDVGIN 235 (286)
T ss_dssp CCCCTT---CBC--GGGSCTTCEEEECCSC
T ss_pred CCCCCC---CCC--HHHcCCCeEEEEeccc
Confidence 998532 222 2457999999998743
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.54 E-value=9e-05 Score=70.44 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=55.3
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHH-HHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~-A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
.+|||||+|.||.. ++.+|++. .+.+++...+++....+. +.+.+.. ..+.+.+|++++ .|+|++++|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~~~~a~~~~~~---~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQM-----QDIRIVAACDSDLERARRVHRFISDI---PVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTC-----TTEEEEEEECSSHHHHGGGGGTSCSC---CEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhC-----CCcEEEEEEcCCHHHHHHHHHhcCCC---cccCCHHHHhcCCCCCEEEEcCC
Confidence 58999999999985 88988775 156665444544433222 2223222 125799999875 599999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 78 ~~~H~~~~~~al~ 90 (359)
T 3m2t_A 78 PQLHFEMGLLAMS 90 (359)
T ss_dssp HHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH
Confidence 9988887765544
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00012 Score=71.63 Aligned_cols=84 Identities=10% Similarity=0.102 Sum_probs=57.8
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceec-CCCcCCHHhhcC--cCCEEEEcc
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-NGTLGDIYETIS--GSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~-~~~~~~~~e~v~--~ADvVILav 186 (317)
.+|||||+|.||. .++..|++. .+.+++...+.+... .+.+.+.|+... ...+.+.+++++ +.|+|++++
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iat 158 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 158 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred eEEEEECCcHHHHHHHHHHHhhC-----CCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcC
Confidence 6899999999997 899988764 045654444444333 334555665310 002568899986 799999999
Q ss_pred CCchHHHHHHHHHh
Q 021114 187 SDAAQADNYEKIFS 200 (317)
Q Consensus 187 P~~~~~~vl~ei~~ 200 (317)
|+..+.++..+.+.
T Consensus 159 p~~~h~~~~~~al~ 172 (433)
T 1h6d_A 159 PNSLHAEFAIRAFK 172 (433)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred CchhHHHHHHHHHH
Confidence 99999887765443
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00021 Score=67.78 Aligned_cols=78 Identities=15% Similarity=0.142 Sum_probs=62.2
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|+ +|..+|+.|... |..|++..+. ..++.+.+++||+||.
T Consensus 161 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 214 (301)
T 1a4i_A 161 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 214 (301)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHhC------CCeEEEEECC-------------------cccHHHHhccCCEEEE
Confidence 47899 9999999996 699999999998 9888776422 2378899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++.... +. .+++|+|++|+|++--
T Consensus 215 Avg~p~~---I~--~~~vk~GavVIDVgi~ 239 (301)
T 1a4i_A 215 ATGQPEM---VK--GEWIKPGAIVIDCGIN 239 (301)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECCCB
T ss_pred CCCCccc---CC--HHHcCCCcEEEEccCC
Confidence 9987432 22 1346899999998753
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00021 Score=69.08 Aligned_cols=88 Identities=17% Similarity=0.185 Sum_probs=60.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVIL 184 (317)
.+|+| ++++|+|+|++|...|+.|+.. |++|++ .+.+....+.+.+.|.. ..+.++++. +||+++.
T Consensus 171 ~~L~G-ktV~I~G~GnVG~~~A~~l~~~------GakVvv-sD~~~~~~~~a~~~ga~-----~v~~~ell~~~~DIliP 237 (355)
T 1c1d_A 171 GSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLV-ADTDTERVAHAVALGHT-----AVALEDVLSTPCDVFAP 237 (355)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-ECSCHHHHHHHHHTTCE-----ECCGGGGGGCCCSEEEE
T ss_pred CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEE-EeCCccHHHHHHhcCCE-----EeChHHhhcCccceecH
Confidence 37999 9999999999999999999999 999874 44443323445556655 236677777 8999985
Q ss_pred ccCCchHHHHHH-HHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYE-KIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~-ei~~~lk~gaiVi~~ 211 (317)
|- ...+++ +.++.|+ ..+|+-.
T Consensus 238 ~A----~~~~I~~~~~~~lk-~~iVie~ 260 (355)
T 1c1d_A 238 CA----MGGVITTEVARTLD-CSVVAGA 260 (355)
T ss_dssp CS----CSCCBCHHHHHHCC-CSEECCS
T ss_pred hH----HHhhcCHHHHhhCC-CCEEEEC
Confidence 42 222333 4445565 4455533
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00025 Score=66.95 Aligned_cols=85 Identities=14% Similarity=0.149 Sum_probs=58.3
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH---CCceecCCCcCCHHhhcCc--CCEEEEc
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG--SDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~---~G~~~~~~~~~~~~e~v~~--ADvVILa 185 (317)
.+|||||+|.||. ..+..+++. .+++++...+++ ...+.+.+ .|... +.+.+|++.+ .|+|+++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~-~~~~~a~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~ 72 (349)
T 3i23_A 3 VKMGFIGFGKSANRYHLPYVMIR-----ETLEVKTIFDLH-VNEKAAAPFKEKGVNF----TADLNELLTDPEIELITIC 72 (349)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECTT-CCHHHHHHHHTTTCEE----ESCTHHHHSCTTCCEEEEC
T ss_pred eEEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEECCC-HHHHHHHhhCCCCCeE----ECCHHHHhcCCCCCEEEEe
Confidence 5899999999998 566667653 156665444444 33444444 45543 5789999975 8999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEE
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+|+..+.++..+.+. .|+-|+
T Consensus 73 tp~~~h~~~~~~al~---aGk~Vl 93 (349)
T 3i23_A 73 TPAHTHYDLAKQAIL---AGKSVI 93 (349)
T ss_dssp SCGGGHHHHHHHHHH---TTCEEE
T ss_pred CCcHHHHHHHHHHHH---cCCEEE
Confidence 999998887665443 455443
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00016 Score=68.11 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=61.5
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|. .|..+|+.|... |..|++..+. ..++.+.+++||+||.
T Consensus 155 i~l~g-k~vvVIG~s~iVG~p~A~lL~~~------gAtVtv~hs~-------------------t~~L~~~~~~ADIVI~ 208 (288)
T 1b0a_A 155 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 208 (288)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred CCCCC-CEEEEECCChHHHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 47899 9999999997 599999999998 9888776432 2378899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++.... +. .+++|+|++|+|++-
T Consensus 209 Avg~p~l---I~--~~~vk~GavVIDVgi 232 (288)
T 1b0a_A 209 AVGKPGF---IP--GDWIKEGAIVIDVGI 232 (288)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECCC
T ss_pred CCCCcCc---CC--HHHcCCCcEEEEccC
Confidence 9995432 22 134699999999874
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00015 Score=68.00 Aligned_cols=85 Identities=20% Similarity=0.200 Sum_probs=57.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhh--hhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLA--EAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~--~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
+|||||+|.||...+..++.... +...+.+++...+.+. +..+.+.+.|+.. ...|.+|+++ +.|+|++++|
T Consensus 8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~---~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWST---TETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESCHHHHTTCTTCSEEEECSC
T ss_pred cEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 78999999999999888876410 0000124544444443 3334566677642 2578999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 85 ~~~H~~~~~~al~ 97 (390)
T 4h3v_A 85 GDSHAEIAIAALE 97 (390)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999887665443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0004 Score=68.01 Aligned_cols=95 Identities=14% Similarity=0.179 Sum_probs=65.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-v~~ADvVILavP 187 (317)
++|.|||+|.+|..+++.|++. |++|++.+ .+.+..+.+++.|+..-.+...+.+ ++ +.+||+||++++
T Consensus 5 ~~viIiG~Gr~G~~va~~L~~~------g~~vvvId-~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 5 MRVIIAGFGRFGQITGRLLLSS------GVKMVVLD-HDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEE-CCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 6799999999999999999999 99876554 4456667777777632112233332 33 688999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPN-SILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~g-aiVi~~~G 213 (317)
+......+-.....+.|+ .+|.-+..
T Consensus 78 ~~~~n~~i~~~ar~~~p~~~Iiara~~ 104 (413)
T 3l9w_A 78 DPQTNLQLTEMVKEHFPHLQIIARARD 104 (413)
T ss_dssp SHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred ChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence 877655444555555555 44544543
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00051 Score=64.97 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=43.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHH-HH--HC-------CceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE-AR--AA-------GFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~-A~--~~-------G~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.||.++|..|... |+ +|++.+ .+++..+. +. +. .... ....+. +++++||
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~------g~~~v~L~D-i~~~~l~~~~~~l~~~~~~~~~~~~i--~~t~d~-~al~~aD 74 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFD-IVKNMPHGKALDTSHTNVMAYSNCKV--SGSNTY-DDLAGAD 74 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEEC-SSSSHHHHHHHHHHTHHHHHTCCCCE--EEECCG-GGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEe-CCHHHHHHHHHHHHhhhhhcCCCcEE--EECCCH-HHhCCCC
Confidence 7999999999999999999988 87 755444 33332221 11 11 1110 012466 7899999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+||+++
T Consensus 75 ~Vi~a~ 80 (322)
T 1t2d_A 75 VVIVTA 80 (322)
T ss_dssp EEEECC
T ss_pred EEEEeC
Confidence 999998
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00038 Score=68.06 Aligned_cols=89 Identities=16% Similarity=0.203 Sum_probs=59.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH----HCCceecCCCcC----CHHhhcC--cCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLG----DIYETIS--GSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~----~~G~~~~~~~~~----~~~e~v~--~ADv 181 (317)
.+|||||+|.||...+.+|++. .+.+++...+.+.+..+.+. +.|+.. ..... +.+|+++ +.|+
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~-----~~~~lvav~d~~~~~~~~~a~~~~~~g~~~-~~~~~~~~~~~~~ll~~~~vD~ 94 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARR-----DDVEIVAFADPDPYMVGRAQEILKKNGKKP-AKVFGNGNDDYKNMLKDKNIDA 94 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSCHHHHHHHHHHHHHTTCCC-CEEECSSTTTHHHHTTCTTCCE
T ss_pred ceEEEEecCHHHHHHHHHHHhC-----CCcEEEEEEeCCHHHHHHHHHHHHhcCCCC-CceeccCCCCHHHHhcCCCCCE
Confidence 6899999999999999988764 15666545555444333322 345310 00145 8999987 5899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
|++++|+..+.++..+.+. .|+-|.
T Consensus 95 V~i~tp~~~h~~~~~~al~---aGkhV~ 119 (444)
T 2ixa_A 95 VFVSSPWEWHHEHGVAAMK---AGKIVG 119 (444)
T ss_dssp EEECCCGGGHHHHHHHHHH---TTCEEE
T ss_pred EEEcCCcHHHHHHHHHHHH---CCCeEE
Confidence 9999999998876665443 455443
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00034 Score=66.53 Aligned_cols=84 Identities=17% Similarity=0.225 Sum_probs=57.7
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.||.. .+..+++. .+++++...+.+.+.. +.+. +... +.+.+|+++ +.|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~~ll~~~~~D~V~i~tp 76 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSV-----PGLNLAFVASRDEEKV--KRDLPDVTV----IASPEAAVQHPDVDLVVIASP 76 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHH--HHHCTTSEE----ESCHHHHHTCTTCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHHH--HhhCCCCcE----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 67777654 1566654455544322 2233 3432 579999998 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+..+.++..+.+. .|+-|+
T Consensus 77 ~~~H~~~~~~al~---aGk~Vl 95 (364)
T 3e82_A 77 NATHAPLARLALN---AGKHVV 95 (364)
T ss_dssp GGGHHHHHHHHHH---TTCEEE
T ss_pred hHHHHHHHHHHHH---CCCcEE
Confidence 9998887665443 455544
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00022 Score=66.90 Aligned_cols=85 Identities=19% Similarity=0.137 Sum_probs=57.6
Q ss_pred EEEEEeccchHHHHHHHHHhhhhh--hcCCceEEEEecC-CcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAE--AKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~--~~~G~~Vivg~r~-~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
+|||||+|.||..-+++++....- .-.+.+++...+. .++..+.+.+.|+.. .+.|.+|+++ +.|+|++++|
T Consensus 27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~---~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEK---ATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSE---EESCHHHHHHCTTCCEEEECSC
T ss_pred cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCe---ecCCHHHHhcCCCCcEEEECCC
Confidence 799999999999888877653100 0013455444444 344445667777642 2579999985 5799999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 104 ~~~H~~~a~~al~ 116 (393)
T 4fb5_A 104 NQFHAEMAIAALE 116 (393)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh
Confidence 9999887765544
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00015 Score=70.36 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=60.8
Q ss_pred CEEEEEeccc---hHHHHHHHHHhhhhhhcCC-ceEEE-EecCC-cccHHHHHHCCceecCCCcCCHHhhcCc-------
Q 021114 112 NQIGVIGWGS---QGPAQAQNLRDSLAEAKSD-IVVKV-GLRKG-SRSFAEARAAGFTEENGTLGDIYETISG------- 178 (317)
Q Consensus 112 kkIGIIG~G~---mG~AiA~~Lr~~~~~~~~G-~~Viv-g~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~------- 178 (317)
.+|||||+|. ||...+..++.. + ++++. ..+++ ++..+.+.+.|+.. ...+.+.+|++++
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~------~~~~lva~v~d~~~~~a~~~a~~~g~~~-~~~~~~~~~ll~~~~~~~~~ 110 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLD------DHYELVAGALSSTPEKAEASGRELGLDP-SRVYSDFKEMAIREAKLKNG 110 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHT------SCEEEEEEECCSSHHHHHHHHHHHTCCG-GGBCSCHHHHHHHHHHCTTC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhC------CCcEEEEEEeCCCHHHHHHHHHHcCCCc-ccccCCHHHHHhcccccCCC
Confidence 5899999999 999999988776 4 56553 33443 33344566677731 1126799999876
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
.|+|++++|+..+.++..+.+ +.|+-|.
T Consensus 111 vD~V~I~tp~~~H~~~~~~al---~aGkhVl 138 (417)
T 3v5n_A 111 IEAVAIVTPNHVHYAAAKEFL---KRGIHVI 138 (417)
T ss_dssp CSEEEECSCTTSHHHHHHHHH---TTTCEEE
T ss_pred CcEEEECCCcHHHHHHHHHHH---hCCCeEE
Confidence 999999999999887766554 3455443
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00042 Score=65.80 Aligned_cols=93 Identities=15% Similarity=0.137 Sum_probs=60.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceec-------------C-CCcCCHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-------------N-GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~-------------~-~~~~~~~e~v 176 (317)
.+|||||+|.||..+++.|.+. .+++++...+.+.+.. ..+...|+... + ....+.++++
T Consensus 3 irVgIiG~G~iG~~~~r~l~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~ 77 (334)
T 2czc_A 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred cEEEEEeEhHHHHHHHHHHhcC-----CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhc
Confidence 5899999999999999999875 1456544444433333 34445553210 0 0134788888
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.++|+|++++|...+.+.....+ +.|+.|++.+
T Consensus 78 ~~vDvV~~aTp~~~h~~~a~~~l---~aGk~Vi~sa 110 (334)
T 2czc_A 78 EKVDIIVDATPGGIGAKNKPLYE---KAGVKAIFQG 110 (334)
T ss_dssp TTCSEEEECCSTTHHHHHHHHHH---HHTCEEEECT
T ss_pred cCCCEEEECCCccccHHHHHHHH---HcCCceEeec
Confidence 89999999999988776655433 3456566543
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00041 Score=65.51 Aligned_cols=94 Identities=20% Similarity=0.179 Sum_probs=62.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHHHHCCceecCCCcCCHHhhc-----CcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEARAAGFTEENGTLGDIYETI-----SGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A~~~G~~~~~~~~~~~~e~v-----~~ADvVIL 184 (317)
.+|||||+|.+|..+++.|.+.. .+.+++...+.+.++ .+.+.+.|... ...+.++++ .+.|+|++
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~----~~~elvav~d~~~~~~~~~~a~~~g~~~---~~~~~e~ll~~~~~~~iDvV~~ 77 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNA----KYLEMGAMVGIDAASDGLARAQRMGVTT---TYAGVEGLIKLPEFADIDFVFD 77 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC----SSEEEEEEECSCTTCHHHHHHHHTTCCE---ESSHHHHHHHSGGGGGEEEEEE
T ss_pred CEEEEEcCcHHHHHHHHHHHhhC----cCeEEEEEEeCChhhhHHHHHHHcCCCc---ccCCHHHHHhccCCCCCcEEEE
Confidence 58999999999999999995520 156655444544333 45667777642 023566665 45899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|...+.++..+.... ++|+.|++...
T Consensus 78 atp~~~h~~~a~~al~a-~~Gk~Vi~ekp 105 (312)
T 1nvm_B 78 ATSASAHVQNEALLRQA-KPGIRLIDLTP 105 (312)
T ss_dssp CSCHHHHHHHHHHHHHH-CTTCEEEECST
T ss_pred CCChHHHHHHHHHHHHh-CCCCEEEEcCc
Confidence 99977776766554432 34777776443
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00012 Score=69.04 Aligned_cols=87 Identities=11% Similarity=0.142 Sum_probs=55.8
Q ss_pred CEEEEEeccchHHHH-HHHH-HhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCc--CCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISG--SDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai-A~~L-r~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~--ADvVILav 186 (317)
.+|||||+|.||..+ +..+ ... .+++++...+++.+..+.+.+ .|... +.+++|++.+ .|+|++++
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~-----~~~~l~av~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~i~t 73 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRK-----DSWHVAHIFRRHAKPEEQAPIYSHIHF----TSDLDEVLNDPDVKLVVVCT 73 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCT-----TTEEEEEEECSSCCGGGGSGGGTTCEE----ESCTHHHHTCTTEEEEEECS
T ss_pred eEEEEEecCHHHHHHHHHHHHhcC-----CCeEEEEEEcCCHhHHHHHHhcCCCce----ECCHHHHhcCCCCCEEEEcC
Confidence 589999999999974 4424 332 156765444443322222222 24432 5789999876 89999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
|+..+.++..+.+ +.|+.|+.
T Consensus 74 p~~~h~~~~~~al---~aGk~Vl~ 94 (345)
T 3f4l_A 74 HADSHFEYAKRAL---EAGKNVLV 94 (345)
T ss_dssp CGGGHHHHHHHHH---HTTCEEEE
T ss_pred ChHHHHHHHHHHH---HcCCcEEE
Confidence 9999888766544 34555543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00013 Score=69.85 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=68.4
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee---cCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE---ENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~---~~~~~~~~~e~v~~ADvV 182 (317)
..+++ +++.|+|.|.+|.+.++.++.. |.+|++.+++. +..+.+.+.|... .+....++.+.++++|+|
T Consensus 163 ~~l~~-~~VlViGaGgvG~~aa~~a~~~------Ga~V~v~dr~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV 234 (361)
T 1pjc_A 163 PGVKP-GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDINV-ERLSYLETLFGSRVELLYSNSAEIETAVAEADLL 234 (361)
T ss_dssp TTBCC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCH-HHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCH-HHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEE
Confidence 35778 9999999999999999999999 99877666653 3344444433210 000112455677899999
Q ss_pred EEccCCchH--HHH-HHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQ--ADN-YEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~--~~v-l~ei~~~lk~gaiVi~~~G 213 (317)
|.+++.... ..+ .++..+.|+++.+|+|++.
T Consensus 235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred EECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence 999975431 122 3456778999999998763
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00022 Score=68.59 Aligned_cols=86 Identities=19% Similarity=0.164 Sum_probs=58.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhh---hhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLA---EAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~---~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILa 185 (317)
.+|||||+|.||...+.++++... +...+.+++...+.+. +..+.+.+.|... .+.|.+|+++ +.|+|+++
T Consensus 27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~---~y~d~~~ll~~~~vD~V~I~ 103 (412)
T 4gqa_A 27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEK---AYGDWRELVNDPQVDVVDIT 103 (412)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSE---EESSHHHHHHCTTCCEEEEC
T ss_pred ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCe---EECCHHHHhcCCCCCEEEEC
Confidence 489999999999999999887510 0001235544444443 3334566667642 2579999985 68999999
Q ss_pred cCCchHHHHHHHHHh
Q 021114 186 ISDAAQADNYEKIFS 200 (317)
Q Consensus 186 vP~~~~~~vl~ei~~ 200 (317)
+|+..+.++..+.+.
T Consensus 104 tp~~~H~~~~~~al~ 118 (412)
T 4gqa_A 104 SPNHLHYTMAMAAIA 118 (412)
T ss_dssp SCGGGHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 999999887665443
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0003 Score=66.26 Aligned_cols=82 Identities=15% Similarity=0.139 Sum_probs=58.1
Q ss_pred CEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+| .+|...+..|++. +.+.+++...+.+.+ ..+.+.+.|... .+.|.+|+++ +.|+|++++|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNL----SHLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT----TTTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhC----CCceEEEEEEcCCHHHHHHHHHHhCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 689999999 8999999998764 114566444454433 334455566521 2579999985 6899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 92 ~~~H~~~~~~al~ 104 (340)
T 1zh8_A 92 VELNLPFIEKALR 104 (340)
T ss_dssp GGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 9998877665443
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00061 Score=64.80 Aligned_cols=80 Identities=9% Similarity=0.023 Sum_probs=57.8
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
.+|||||+|.+|. .++..++.. +.+++...+++.+ ..+.+.+.|... .+.+.+|++++ .|+|++++|
T Consensus 27 irvgiiG~G~~~~~~~~~~~~~~------~~~lvav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 27 LRFAAVGLNHNHIYGQVNCLLRA------GARLAGFHEKDDALAAEFSAVYADAR---RIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CEEEEECCCSTTHHHHHHHHHHT------TCEEEEEECSCHHHHHHHHHHSSSCC---EESCHHHHHTCTTCCEEEECCC
T ss_pred cEEEEECcCHHHHHHHHHHhhcC------CcEEEEEEcCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEeCC
Confidence 5899999999994 567777766 8876655555443 334556666431 25799999975 899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 98 ~~~H~~~~~~al~ 110 (361)
T 3u3x_A 98 SSERAELAIRAMQ 110 (361)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9988887665444
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00044 Score=65.57 Aligned_cols=84 Identities=11% Similarity=0.182 Sum_probs=58.0
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.||.. .+..+++. .+++++...+++.+. .+.+. +... +.+.+++++ +.|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVL-----DEYQISKIMTSRTEE--VKRDFPDAEV----VHELEEITNDPAIELVIVTTP 74 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTC-----TTEEEEEEECSCHHH--HHHHCTTSEE----ESSTHHHHTCTTCCEEEECSC
T ss_pred ceEEEEccCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHhhCCCCce----ECCHHHHhcCCCCCEEEEcCC
Confidence 58999999999997 67777654 156665445554322 33444 3432 578999997 7899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+..+.++..+.+. .|+-|+
T Consensus 75 ~~~H~~~~~~al~---aGkhVl 93 (358)
T 3gdo_A 75 SGLHYEHTMACIQ---AGKHVV 93 (358)
T ss_dssp TTTHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---cCCeEE
Confidence 9998887765443 355443
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00034 Score=65.99 Aligned_cols=78 Identities=9% Similarity=0.157 Sum_probs=53.7
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
.+|||||+|.||.. .+..+++. .+.+++...+.+....+ .+. +.. .+.+.+|++.+ .|+|++++|
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~-----~~~~l~av~d~~~~~~~--~~~~~~~----~~~~~~~ll~~~~vD~V~i~tp 76 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGT-----PGLELAGVSSSDASKVH--ADWPAIP----VVSDPQMLFNDPSIDLIVIPTP 76 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTS-----TTEEEEEEECSCHHHHH--TTCSSCC----EESCHHHHHHCSSCCEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCcEEEEEECCCHHHHH--hhCCCCc----eECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 77777764 15566544454432221 122 222 25799999865 899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 77 ~~~H~~~~~~al~ 89 (352)
T 3kux_A 77 NDTHFPLAQSALA 89 (352)
T ss_dssp TTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999887665443
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00011 Score=66.34 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=52.2
Q ss_pred CEEEEEeccchHHHHHHH--HHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQN--LRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~--Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|+|||+|++|.++++. .... |++++...|.++..... .-.|+... ...++++++++.|+|++++|..
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~------g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNN------NTKISMAFDINESKIGT-EVGGVPVY--NLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------------CCEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHCSSCCEEEECSCHH
T ss_pred CEEEEEccCHHHHHHHHHHhcccC------CcEEEEEEeCCHHHHHh-HhcCCeee--chhhHHHHHHhCCEEEEecCch
Confidence 689999999999999994 3334 77776666655432211 11233211 1457889987779999999998
Q ss_pred hHHHHHHHHHh
Q 021114 190 AQADNYEKIFS 200 (317)
Q Consensus 190 ~~~~vl~ei~~ 200 (317)
...++.+.+..
T Consensus 157 ~~~ei~~~l~~ 167 (215)
T 2vt3_A 157 AAQSITDRLVA 167 (215)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 87777777654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00075 Score=63.46 Aligned_cols=89 Identities=15% Similarity=0.102 Sum_probs=55.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc---ccHHHHHHC--CceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS---RSFAEARAA--GFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~---~s~~~A~~~--G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
+||+|||.|.||..+|..|... |+ ++++.+...+ ...+..... .+.. ..+. +.+++||+||+
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~------g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~----t~d~-~~l~~aD~Vi~ 83 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK------GIADRLVLLDLSEGTKGATMDLEIFNLPNVEI----SKDL-SASAHSKVVIF 83 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECCC-----CHHHHHHHTCTTEEE----ESCG-GGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE----eCCH-HHHCCCCEEEE
Confidence 8999999999999999999888 77 7766654432 111222111 1221 2566 77899999999
Q ss_pred ccCCch---------------HHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAA---------------QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~---------------~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.-... ..++++++.++. |+++++.++
T Consensus 84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~s 125 (303)
T 2i6t_A 84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYS-QHSVLLVAS 125 (303)
T ss_dssp CCCC----CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEECS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEEcC
Confidence 972211 122444555554 777766544
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00083 Score=63.00 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=44.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
|||+|||.|.+|.++|..|... |+ ++.+.++..+.....+.+ .+....-....+ .+++++||+|
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~------~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiV 73 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEE
Confidence 6899999999999999999988 77 676665543221101111 111000001235 7899999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
|++..
T Consensus 74 Viaag 78 (294)
T 1oju_A 74 VVTAG 78 (294)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99874
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00036 Score=66.16 Aligned_cols=78 Identities=10% Similarity=0.132 Sum_probs=54.7
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
.+|||||+|.||.. .+..+++. .+.+++...+.+.+. .+.+. +... +.+.+|++++ .|+|++++|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~-----~~~~l~av~d~~~~~--~~~~~~~~~~----~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTN-----PHFELYKIVERSKEL--SKERYPQASI----VRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHC-----TTEEEEEEECSSCCG--GGTTCTTSEE----ESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhC-----CCeEEEEEEcCCHHH--HHHhCCCCce----ECCHHHHhcCCCCCEEEEeCC
Confidence 58999999999997 67777654 156665444444332 22334 3332 5789999976 899999999
Q ss_pred CchHHHHHHHHHh
Q 021114 188 DAAQADNYEKIFS 200 (317)
Q Consensus 188 ~~~~~~vl~ei~~ 200 (317)
+..+.++..+.+.
T Consensus 75 ~~~H~~~~~~al~ 87 (362)
T 3fhl_A 75 DNTHYEYAGMALE 87 (362)
T ss_dssp GGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9998887665444
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00057 Score=64.16 Aligned_cols=79 Identities=16% Similarity=0.159 Sum_probs=59.3
Q ss_pred cccCCCCEEEEEeccch-HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~m-G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|.| |..+|+.|... +.|..|++..++ ..++.+.+++||+||.
T Consensus 154 i~l~g-k~vvVvG~s~iVG~p~A~lL~~~----g~~atVtv~h~~-------------------t~~L~~~~~~ADIVI~ 209 (281)
T 2c2x_A 154 ISIAG-AHVVVIGRGVTVGRPLGLLLTRR----SENATVTLCHTG-------------------TRDLPALTRQADIVVA 209 (281)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHTST----TTCCEEEEECTT-------------------CSCHHHHHTTCSEEEE
T ss_pred CCCCC-CEEEEECCCcHHHHHHHHHHhcC----CCCCEEEEEECc-------------------hhHHHHHHhhCCEEEE
Confidence 37899 99999999986 99999999765 113567665432 2378899999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++-... +. .+++|+|++|+|++-
T Consensus 210 Avg~p~~---I~--~~~vk~GavVIDVgi 233 (281)
T 2c2x_A 210 AVGVAHL---LT--ADMVRPGAAVIDVGV 233 (281)
T ss_dssp CSCCTTC---BC--GGGSCTTCEEEECCE
T ss_pred CCCCCcc---cC--HHHcCCCcEEEEccC
Confidence 9985432 22 234689999998874
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0017 Score=60.78 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=43.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHH-HHH--HCC-------ceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA-EAR--AAG-------FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~-~A~--~~G-------~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.||.++|..|... |+ ++.+. |.+++..+ .+. ..+ ... ....+. +.+++||
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~------g~~~v~L~-Di~~~~~~g~~~dl~~~~~~~~~~~~i--~~t~d~-~a~~~aD 72 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLL-DIVEGVPQGKALDLYEASPIEGFDVRV--TGTNNY-ADTANSD 72 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEE-CSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESCG-GGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCeEEEE-eCCccHHHHHHHhHHHhHhhcCCCeEE--EECCCH-HHHCCCC
Confidence 6999999999999999999888 86 75444 43332222 111 111 100 012466 7899999
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+||+++.
T Consensus 73 ~Vi~a~g 79 (309)
T 1ur5_A 73 VIVVTSG 79 (309)
T ss_dssp EEEECCC
T ss_pred EEEEcCC
Confidence 9999974
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0006 Score=64.87 Aligned_cols=97 Identities=14% Similarity=0.181 Sum_probs=59.2
Q ss_pred ccCCC-CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc-eecCC-CcCCHHhhcCcCCEEE
Q 021114 107 AFNGI-NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVL 183 (317)
Q Consensus 107 ~l~Gi-kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~~~~~-~~~~~~e~v~~ADvVI 183 (317)
.++|. |||.|||.|.+|..+++.|.+ .++|.++.+. .+..+.+.+..- ..-|. ...++.++++++|+||
T Consensus 11 ~~~g~~mkilvlGaG~vG~~~~~~L~~-------~~~v~~~~~~-~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi 82 (365)
T 3abi_A 11 HIEGRHMKVLILGAGNIGRAIAWDLKD-------EFDVYIGDVN-NENLEKVKEFATPLKVDASNFDKLVEVMKEFELVI 82 (365)
T ss_dssp -----CCEEEEECCSHHHHHHHHHHTT-------TSEEEEEESC-HHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred cccCCccEEEEECCCHHHHHHHHHHhc-------CCCeEEEEcC-HHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEE
Confidence 34442 689999999999999999865 4577776654 333444332211 10010 0123557889999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.++|+.....+.+... +.|+-++|.+..
T Consensus 83 ~~~p~~~~~~v~~~~~---~~g~~yvD~s~~ 110 (365)
T 3abi_A 83 GALPGFLGFKSIKAAI---KSKVDMVDVSFM 110 (365)
T ss_dssp ECCCGGGHHHHHHHHH---HHTCEEEECCCC
T ss_pred EecCCcccchHHHHHH---hcCcceEeeecc
Confidence 9999987666665433 345666666543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=65.22 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=64.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCC-----ceecCCCcCCHHhhcCcC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~~~~~~~~~e~v~~A 179 (317)
.+++| +++.|+|.|-+|.+++..|.+. |. +|++.+|+.++..+.+.+.+ .........++++.++++
T Consensus 123 ~~l~~-k~vlVlGaGG~g~aia~~L~~~------G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~ 195 (283)
T 3jyo_A 123 PNAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAA 195 (283)
T ss_dssp TTCCC-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHS
T ss_pred cCcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcC
Confidence 46789 9999999999999999999998 98 68888777544333333221 110000123777888999
Q ss_pred CEEEEccCCchHHH---HHHHHHhcCCCCcEEEEec
Q 021114 180 DLVLLLISDAAQAD---NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~---vl~ei~~~lk~gaiVi~~~ 212 (317)
|+||-+||...... .+. ...++++.+|.|+.
T Consensus 196 DiVInaTp~Gm~~~~~~pi~--~~~l~~~~~v~Dlv 229 (283)
T 3jyo_A 196 DGVVNATPMGMPAHPGTAFD--VSCLTKDHWVGDVV 229 (283)
T ss_dssp SEEEECSSTTSTTSCSCSSC--GGGCCTTCEEEECC
T ss_pred CEEEECCCCCCCCCCCCCCC--HHHhCCCCEEEEec
Confidence 99999999653321 011 23456666666653
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00023 Score=66.60 Aligned_cols=92 Identities=13% Similarity=0.039 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| +++.|||.|-+|.+++..|.+. |. +|++.+|+.++..+.+.+.+... ..++++ + ++|+||.
T Consensus 118 ~~~~~-k~vlvlGaGGaaraia~~L~~~------G~~~v~v~nRt~~ka~~La~~~~~~~----~~~l~~-l-~~DivIn 184 (282)
T 3fbt_A 118 VEIKN-NICVVLGSGGAARAVLQYLKDN------FAKDIYVVTRNPEKTSEIYGEFKVIS----YDELSN-L-KGDVIIN 184 (282)
T ss_dssp CCCTT-SEEEEECSSTTHHHHHHHHHHT------TCSEEEEEESCHHHHHHHCTTSEEEE----HHHHTT-C-CCSEEEE
T ss_pred CCccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHhcCccc----HHHHHh-c-cCCEEEE
Confidence 35788 9999999999999999999998 98 78888877544333332222121 223444 5 8999999
Q ss_pred ccCCchHHH----HHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~----vl~ei~~~lk~gaiVi~~~ 212 (317)
+||...... .+. ...++++.+|+|+.
T Consensus 185 aTp~Gm~~~~~~~pi~--~~~l~~~~~v~Dlv 214 (282)
T 3fbt_A 185 CTPKGMYPKEGESPVD--KEVVAKFSSAVDLI 214 (282)
T ss_dssp CSSTTSTTSTTCCSSC--HHHHTTCSEEEESC
T ss_pred CCccCccCCCccCCCC--HHHcCCCCEEEEEe
Confidence 999753211 111 12346778888764
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00059 Score=64.88 Aligned_cols=86 Identities=12% Similarity=0.077 Sum_probs=60.5
Q ss_pred CEEEEEe-ccchHHH-HH----HHHHhhhhhhcCC-ce----------EEEEecCCcccHHHHHHCCceecCCCcCCHHh
Q 021114 112 NQIGVIG-WGSQGPA-QA----QNLRDSLAEAKSD-IV----------VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE 174 (317)
Q Consensus 112 kkIGIIG-~G~mG~A-iA----~~Lr~~~~~~~~G-~~----------Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e 174 (317)
.+||||| +|.||.. .+ ..+++. + .. +.+..+..++..+.+.+.|+.. .+.|.+|
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~------~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~---~~~~~~~ 77 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ------GGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIAR---WTTDLDA 77 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHH------TSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCC---EESCHHH
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhc------CceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCc---ccCCHHH
Confidence 5899999 9999998 77 777765 3 22 1245555455555667778741 2579999
Q ss_pred hcCc--CCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 175 TISG--SDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 175 ~v~~--ADvVILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
++++ .|+|++++|+..+.++..+.+ +.|+-|.
T Consensus 78 ll~~~~iD~V~i~tp~~~h~~~~~~al---~~Gk~V~ 111 (383)
T 3oqb_A 78 ALADKNDTMFFDAATTQARPGLLTQAI---NAGKHVY 111 (383)
T ss_dssp HHHCSSCCEEEECSCSSSSHHHHHHHH---TTTCEEE
T ss_pred HhcCCCCCEEEECCCchHHHHHHHHHH---HCCCeEE
Confidence 9865 899999999988887766544 3455554
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00038 Score=65.27 Aligned_cols=80 Identities=10% Similarity=0.087 Sum_probs=54.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHH----HHHHCCceecCCCcCCHHhhcCc--CCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFA----EARAAGFTEENGTLGDIYETISG--SDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~----~A~~~G~~~~~~~~~~~~e~v~~--ADvVIL 184 (317)
.+|||||+|.+|...++.+ .. +.+++...+++. +..+ .+.+.|+.. ..+.|.+|++++ .|+|++
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~------~~~lvav~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll~~~~vD~V~I 73 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DE------ECSITGIAPGVPEEDLSKLEKAISEMNIKP--KKYNNWWEMLEKEKPDILVI 73 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CT------TEEEEEEECSSTTCCCHHHHHHHHTTTCCC--EECSSHHHHHHHHCCSEEEE
T ss_pred eEEEEEccchhHHHHHHhc-CC------CcEEEEEecCCchhhHHHHHHHHHHcCCCC--cccCCHHHHhcCCCCCEEEE
Confidence 6899999999999777776 44 777654454432 2222 222346521 126799999864 899999
Q ss_pred ccCCchHHHHHHHHHh
Q 021114 185 LISDAAQADNYEKIFS 200 (317)
Q Consensus 185 avP~~~~~~vl~ei~~ 200 (317)
++|+..+.++..+.+.
T Consensus 74 ~tp~~~H~~~~~~al~ 89 (337)
T 3ip3_A 74 NTVFSLNGKILLEALE 89 (337)
T ss_dssp CSSHHHHHHHHHHHHH
T ss_pred eCCcchHHHHHHHHHH
Confidence 9999988877665544
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0012 Score=62.29 Aligned_cols=93 Identities=14% Similarity=0.222 Sum_probs=53.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CCce---ecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFT---EENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~---~~~~~~~~~~e~v~~ADvVIL 184 (317)
+||+|||.|.+|.+++..|... |+ ++++.+....+....+.+ .+.. .-.-..++ .+++++||+||+
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~~------~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~a~~~aDvVii 80 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD-YSDVKDCDVIVV 80 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C-GGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECC-HHHhCCCCEEEE
Confidence 7899999999999999999887 76 665554432221112222 2210 00001223 667999999999
Q ss_pred ccCCchH----------------HHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQ----------------ADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~----------------~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.+.... .++.+++.++ .|+++|+.++
T Consensus 81 ~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (318)
T 1y6j_A 81 TAGANRKPGETRLDLAKKNVMIAKEVTQNIMKY-YNHGVILVVS 123 (318)
T ss_dssp CCCC------CHHHHHHHHHHHHHHHHHHHHHH-CCSCEEEECS
T ss_pred cCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 9875431 1233345454 5788777653
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00031 Score=65.07 Aligned_cols=85 Identities=11% Similarity=0.152 Sum_probs=56.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~ 189 (317)
.+|||||+|.||...+..+.... ...+.+++...+++. .+.+.|+. ..+.+|+++ +.|+|++++|+.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~--~~~~~~lvav~d~~~----~a~~~g~~-----~~~~~ell~~~~vD~V~i~tp~~ 76 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPR--SAAFLNLIGFVSRRE----LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH--HHTTEEEEEEECSSC----CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred ceEEEEEEcHHHHHHHHHHhccc--cCCCEEEEEEECchH----HHHHcCCC-----CCCHHHHhcCCCCCEEEEeCCcH
Confidence 68999999999999999887520 001455543333321 12234543 358999886 689999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEE
Q 021114 190 AQADNYEKIFSCMKPNS-ILGL 210 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~ga-iVi~ 210 (317)
.+.++..+.+. .|+ +++.
T Consensus 77 ~H~~~~~~al~---aGkhVl~E 95 (294)
T 1lc0_A 77 SHEDYIRQFLQ---AGKHVLVE 95 (294)
T ss_dssp GHHHHHHHHHH---TTCEEEEE
T ss_pred hHHHHHHHHHH---CCCcEEEe
Confidence 88776665443 455 4443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=62.29 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=45.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~---------~G~~~~~~~~~~~~e~v~~AD 180 (317)
|||+|||.|.||.++|..|... |+ ++++.+....+....+.+ ..... ...+..+.+++||
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v---~~~~~~~a~~~aD 71 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQ------DVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRV---TGTNDYGPTEDSD 71 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEE---EEESSSGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEE---EECCCHHHhCCCC
Confidence 6899999999999999999988 76 666555544322111111 01111 0124568899999
Q ss_pred EEEEccCCc
Q 021114 181 LVLLLISDA 189 (317)
Q Consensus 181 vVILavP~~ 189 (317)
+||++.+..
T Consensus 72 vVii~ag~~ 80 (314)
T 3nep_X 72 VCIITAGLP 80 (314)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCC
Confidence 999987543
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00057 Score=67.94 Aligned_cols=84 Identities=7% Similarity=0.127 Sum_probs=58.3
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVIL 184 (317)
.+|||||+ |.||...+..|++. ..+++++...+.+.. ..+.+.+.|+.. ...+.+.+|+++ +.|+|++
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~----~~~~~lvav~d~~~~~a~~~a~~~g~~~-~~~~~d~~ell~~~~vD~V~I 114 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 114 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999998763 016666544444433 334455667530 012578999985 6999999
Q ss_pred ccCCchHHHHHHHHHh
Q 021114 185 LISDAAQADNYEKIFS 200 (317)
Q Consensus 185 avP~~~~~~vl~ei~~ 200 (317)
++|+..+.++..+.+.
T Consensus 115 ~tp~~~H~~~~~~al~ 130 (479)
T 2nvw_A 115 SVKVPEHYEVVKNILE 130 (479)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHH
Confidence 9999988876665443
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=62.16 Aligned_cols=96 Identities=15% Similarity=0.180 Sum_probs=59.4
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceec-----------CC--C-cCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEE-----------NG--T-LGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~-----------~~--~-~~~~~e~ 175 (317)
+.||||+|+|.||..+++.|.+. .+++++...+... .+...+.+.|+... +. . ..+.+++
T Consensus 1 mikVgIiGaG~iG~~l~r~L~~~-----~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~ 75 (337)
T 1cf2_P 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (337)
T ss_dssp CEEEEEECCSTTHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEeECHHHHHHHHHHHcC-----CCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHH
Confidence 36899999999999999999763 1566544443332 22223333321100 00 0 1256677
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.++|+|+.++|.....+.....+. .|+.|++.++-
T Consensus 76 ~~~vDvV~~atp~~~~~~~a~~~l~---aG~~VId~sp~ 111 (337)
T 1cf2_P 76 LDEADIVIDCTPEGIGAKNLKMYKE---KGIKAIFQGGE 111 (337)
T ss_dssp HHTCSEEEECCSTTHHHHHHHHHHH---HTCCEEECTTS
T ss_pred hcCCCEEEECCCchhhHHHHHHHHH---cCCEEEEecCC
Confidence 7899999999999887776665443 35567776654
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00042 Score=65.79 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=61.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---CcccHHHHHH----CCceecCCCcCC---HHh
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARA----AGFTEENGTLGD---IYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~---~~~s~~~A~~----~G~~~~~~~~~~---~~e 174 (317)
.+++| +++.|+|.|-+|.+++..|.+. |. +|++.+|+ .++..+.+.+ .+....-....+ +.+
T Consensus 150 ~~l~g-k~~lVlGaGG~g~aia~~L~~~------Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~ 222 (315)
T 3tnl_A 150 HDIIG-KKMTICGAGGAATAICIQAALD------GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK 222 (315)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCccC-CEEEEECCChHHHHHHHHHHHC------CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh
Confidence 46789 9999999999999999999998 98 78888887 3332233322 121110001223 446
Q ss_pred hcCcCCEEEEccCCchHHH----HHHHHHhcCCCCcEEEEe
Q 021114 175 TISGSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~----vl~ei~~~lk~gaiVi~~ 211 (317)
.+.++|+||-+||...... .+. ....++++.+|.|+
T Consensus 223 ~l~~aDiIINaTp~Gm~~~~~~~p~~-~~~~l~~~~~V~Dl 262 (315)
T 3tnl_A 223 EIAESVIFTNATGVGMKPFEGETLLP-SADMLRPELIVSDV 262 (315)
T ss_dssp HHHTCSEEEECSSTTSTTSTTCCSCC-CGGGCCTTCEEEES
T ss_pred hhcCCCEEEECccCCCCCCCCCCCCC-cHHHcCCCCEEEEe
Confidence 6789999999999653311 010 12335666666654
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0028 Score=60.20 Aligned_cols=71 Identities=18% Similarity=0.148 Sum_probs=46.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH---------CCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---------AGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~---------~G~~~~~~~~~~~~e~v 176 (317)
..+. +||+|||.|.||.++|..|... |+ ++.+.+...++....+.+ ..... ....+. +++
T Consensus 4 ~m~~-~kI~viGaG~vG~~~a~~l~~~------~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v--~~t~d~-~a~ 73 (324)
T 3gvi_A 4 SMAR-NKIALIGSGMIGGTLAHLAGLK------ELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKF--TGANDY-AAI 73 (324)
T ss_dssp --CC-CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCE--EEESSG-GGG
T ss_pred CCcC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEE--EEeCCH-HHH
Confidence 3445 8999999999999999999988 77 776666554322111110 11111 002354 889
Q ss_pred CcCCEEEEccC
Q 021114 177 SGSDLVLLLIS 187 (317)
Q Consensus 177 ~~ADvVILavP 187 (317)
++||+||++..
T Consensus 74 ~~aDiVIiaag 84 (324)
T 3gvi_A 74 EGADVVIVTAG 84 (324)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEEccC
Confidence 99999999964
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0017 Score=61.07 Aligned_cols=90 Identities=24% Similarity=0.219 Sum_probs=54.5
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhcCcCCEE
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~e~v~~ADvV 182 (317)
||+|||.|.||.++|..|... |+ ++.+.+...++....+.+. ..... ...+. +++++||+|
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~------~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~--~t~d~-~a~~~aD~V 71 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR------GYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRIS--GSNSY-EDMRGSDIV 71 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH------TCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEE--EESCG-GGGTTCSEE
T ss_pred CEEEECcCHHHHHHHHHHHhC------CCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEE--ECCCH-HHhCCCCEE
Confidence 699999999999999999887 76 4665554432221112111 11110 11455 689999999
Q ss_pred EEccCCch----------------HHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAA----------------QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~----------------~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|++.+... ..++.+++.++ .|++++++++
T Consensus 72 i~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~t 116 (308)
T 2d4a_B 72 LVTAGIGRKPGMTREQLLEANANTMADLAEKIKAY-AKDAIVVITT 116 (308)
T ss_dssp EECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHH-CTTCEEEECC
T ss_pred EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH-CCCeEEEEeC
Confidence 99966543 22233445554 3777766553
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00068 Score=63.49 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=66.3
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+++|+|. |.||..+++++++. |++++...++.... + .-.|+.. +.+++|+.+ +.|++++++|+
T Consensus 14 ~~v~V~Gasg~~G~~~~~~l~~~------g~~~V~~VnP~~~g-~--~i~G~~v----y~sl~el~~~~~~Dv~ii~vp~ 80 (294)
T 2yv1_A 14 TKAIVQGITGRQGSFHTKKMLEC------GTKIVGGVTPGKGG-Q--NVHGVPV----FDTVKEAVKETDANASVIFVPA 80 (294)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCEEEEECTTCTT-C--EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCeEEEEeCCCCCC-c--eECCEee----eCCHHHHhhcCCCCEEEEccCH
Confidence 46788898 99999999999998 88855455543210 0 0146654 568999888 89999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+++++..+. ....+|+.+.|+..
T Consensus 81 ~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 107 (294)
T 2yv1_A 81 PFAKDAVFEAIDA-GIELIVVITEHIPV 107 (294)
T ss_dssp HHHHHHHHHHHHT-TCSEEEECCSCCCH
T ss_pred HHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 9999988876654 23345667888853
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0019 Score=61.50 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=43.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHH--HHCCcee--cC-CCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEA--RAAGFTE--EN-GTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A--~~~G~~~--~~-~~~~~~~e~v~~ADvVIL 184 (317)
+||+|||.|.||.++|..|... |+ ++++.+...++....+ ...+... .+ ....+..+++++||+||+
T Consensus 6 ~kI~ViGaG~vG~~~a~~l~~~------~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi 79 (326)
T 3pqe_A 6 NKVALIGAGFVGSSYAFALINQ------GITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCI 79 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEE
Confidence 7999999999999999999988 76 6655544322111111 1222110 00 001233568999999999
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+..
T Consensus 80 ~ag 82 (326)
T 3pqe_A 80 CAG 82 (326)
T ss_dssp CCS
T ss_pred ecc
Confidence 874
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0008 Score=65.01 Aligned_cols=71 Identities=11% Similarity=0.120 Sum_probs=52.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEE-EEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
.||+|||+| +|.-.+..+++. ..+++++ +..+..++..+.|.+.|+.. ++|.++++.+.|+|++++|...
T Consensus 8 ~rv~VvG~G-~g~~h~~a~~~~----~~~~elvav~~~~~~~a~~~a~~~gv~~----~~~~~~l~~~~D~v~i~~p~~~ 78 (372)
T 4gmf_A 8 QRVLIVGAK-FGEMYLNAFMQP----PEGLELVGLLAQGSARSRELAHAFGIPL----YTSPEQITGMPDIACIVVRSTV 78 (372)
T ss_dssp EEEEEECST-TTHHHHHTTSSC----CTTEEEEEEECCSSHHHHHHHHHTTCCE----ESSGGGCCSCCSEEEECCC--C
T ss_pred CEEEEEehH-HHHHHHHHHHhC----CCCeEEEEEECCCHHHHHHHHHHhCCCE----ECCHHHHhcCCCEEEEECCCcc
Confidence 689999999 798877777664 1146654 33444455667788889864 6799999999999999999877
Q ss_pred H
Q 021114 191 Q 191 (317)
Q Consensus 191 ~ 191 (317)
+
T Consensus 79 h 79 (372)
T 4gmf_A 79 A 79 (372)
T ss_dssp T
T ss_pred c
Confidence 6
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0012 Score=62.00 Aligned_cols=91 Identities=13% Similarity=0.255 Sum_probs=65.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--c-CCEEEEccC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--G-SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~-ADvVILavP 187 (317)
.++.|+|. |.||..+++++++. |++++....+...- + .-.|+.. +.+++|+.+ . .|++++++|
T Consensus 14 ~~vvV~Gasg~~G~~~~~~l~~~------g~~~v~~VnP~~~g-~--~i~G~~v----y~sl~el~~~~~~~DvaIi~vp 80 (297)
T 2yv2_A 14 TRVLVQGITGREGSFHAKAMLEY------GTKVVAGVTPGKGG-S--EVHGVPV----YDSVKEALAEHPEINTSIVFVP 80 (297)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTT-C--EETTEEE----ESSHHHHHHHCTTCCEEEECCC
T ss_pred CEEEEECCCCCHHHHHHHHHHhC------CCcEEEEeCCCCCC-c--eECCEee----eCCHHHHhhcCCCCCEEEEecC
Confidence 56778898 99999999999998 88855555543200 0 0146654 568888876 5 999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
+....+++++..+. .-..+|+.+.|+..
T Consensus 81 ~~~~~~~v~ea~~~-Gi~~vVi~t~G~~~ 108 (297)
T 2yv2_A 81 APFAPDAVYEAVDA-GIRLVVVITEGIPV 108 (297)
T ss_dssp GGGHHHHHHHHHHT-TCSEEEECCCCCCH
T ss_pred HHHHHHHHHHHHHC-CCCEEEEECCCCCH
Confidence 99999998876654 22346667888853
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00078 Score=65.85 Aligned_cols=83 Identities=11% Similarity=0.142 Sum_probs=57.7
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVIL 184 (317)
.+|||||+ |.||...+..|++. ..+++++...+.+... .+.+.+.|+.. ...+.+.+|+++ +.|+|++
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~----~~~~~lvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~ll~~~~vD~V~i 95 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQL----SSQFQITALYSPKIETSIATIQRLKLSN-ATAFPTLESFASSSTIDMIVI 95 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHT----TTTEEEEEEECSSHHHHHHHHHHTTCTT-CEEESSHHHHHHCSSCSEEEE
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhc----CCCeEEEEEEeCCHHHHHHHHHHcCCCc-ceeeCCHHHHhcCCCCCEEEE
Confidence 68999999 99999999999763 0166665444544433 34455566530 012568999986 6899999
Q ss_pred ccCCchHHHHHHHHH
Q 021114 185 LISDAAQADNYEKIF 199 (317)
Q Consensus 185 avP~~~~~~vl~ei~ 199 (317)
++|+..+.++..+.+
T Consensus 96 ~tp~~~H~~~~~~al 110 (438)
T 3btv_A 96 AIQVASHYEVVMPLL 110 (438)
T ss_dssp CSCHHHHHHHHHHHH
T ss_pred eCCcHHHHHHHHHHH
Confidence 999998887666443
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0012 Score=62.11 Aligned_cols=80 Identities=10% Similarity=0.125 Sum_probs=57.3
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc---CCEEEEccC
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~---ADvVILavP 187 (317)
.+|||||+|.||. ..+..|++. .+.+++...+++.+ +.|+.. +.+.+|++++ .|+|++++|
T Consensus 26 ~rvgiiG~G~ig~~~~~~~l~~~-----~~~~lvav~d~~~~------~~g~~~----~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 26 INLAIVGVGKIVRDQHLPSIAKN-----ANFKLVATASRHGT------VEGVNS----YTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp EEEEEECCSHHHHHTHHHHHHHC-----TTEEEEEEECSSCC------CTTSEE----ESSHHHHHHHCTTCCEEEECSC
T ss_pred ceEEEEecCHHHHHHHHHHHHhC-----CCeEEEEEEeCChh------hcCCCc----cCCHHHHHhCCCCCCEEEEeCC
Confidence 5899999999998 788888875 15665544444432 246653 6799998865 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+..+.++..+.+. .|+-|.
T Consensus 91 ~~~H~~~~~~al~---aGkhVl 109 (330)
T 4ew6_A 91 PQYRYEAAYKALV---AGKHVF 109 (330)
T ss_dssp HHHHHHHHHHHHH---TTCEEE
T ss_pred cHHHHHHHHHHHH---cCCcEE
Confidence 9888777665443 355444
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0017 Score=62.13 Aligned_cols=95 Identities=21% Similarity=0.199 Sum_probs=55.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHH--HCC--ceecC--CCcCCHHhhcCcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEEN--GTLGDIYETISGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~~--~~~~~~~e~v~~AD 180 (317)
.. +||+|||.|.||.++|..|... |+ ++++.+...+.....+. ..+ +.... ....+.++ +++||
T Consensus 20 ~~-~kV~ViGaG~vG~~~a~~la~~------g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daD 91 (330)
T 3ldh_A 20 SY-NKITVVGCDAVGMADAISVLMK------DLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSK 91 (330)
T ss_dssp CC-CEEEEESTTHHHHHHHHHHHHH------CCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCC
Confidence 34 8999999999999999999988 76 66555443221111111 111 10000 01245655 99999
Q ss_pred EEEEccCCch---------H---HH----HHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAA---------Q---AD----NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~---------~---~~----vl~ei~~~lk~gaiVi~~~ 212 (317)
+||++..... . .+ +.+++.++ .|+++++.++
T Consensus 92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~-~P~a~ilvvt 138 (330)
T 3ldh_A 92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKH-SPDCLKELHP 138 (330)
T ss_dssp EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHH-CTTCEEEECS
T ss_pred EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhh-CCCceEEeCC
Confidence 9999853211 1 12 33345555 6788776554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0034 Score=59.48 Aligned_cols=67 Identities=19% Similarity=0.187 Sum_probs=44.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHH--HCC-------ceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR--AAG-------FTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~--~~G-------~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|.||.++|..|... |+ ++.+.+...++....+. +.. ... ....+ .+++++||+
T Consensus 6 ~kI~iiGaG~vG~~~a~~l~~~------~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v--~~t~d-~~a~~~aDv 76 (321)
T 3p7m_A 6 KKITLVGAGNIGGTLAHLALIK------QLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKV--RGTND-YKDLENSDV 76 (321)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCE--EEESC-GGGGTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEE--EEcCC-HHHHCCCCE
Confidence 8999999999999999999988 66 76665554332211111 111 111 00124 578999999
Q ss_pred EEEccC
Q 021114 182 VLLLIS 187 (317)
Q Consensus 182 VILavP 187 (317)
||++..
T Consensus 77 VIi~ag 82 (321)
T 3p7m_A 77 VIVTAG 82 (321)
T ss_dssp EEECCS
T ss_pred EEEcCC
Confidence 999864
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0019 Score=60.84 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=54.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHH-HHHH--C-------CceecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARA--A-------GFTEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~~--~-------G~~~~~~~~~~~~e~v~~A 179 (317)
+||+|||.|.+|.+++..|... |. ++.+ .|.+++..+ .+.. . .... ..+..+++++|
T Consensus 7 ~KI~IIGaG~vG~~la~~l~~~------~~~~ei~L-~Di~~~~~~g~~~dl~~~~~~~~~~~~v----~~~~~~a~~~a 75 (317)
T 3d0o_A 7 NKVVLIGNGAVGSSYAFSLVNQ------SIVDELVI-IDLDTEKVRGDVMDLKHATPYSPTTVRV----KAGEYSDCHDA 75 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCSEEEE-ECSCHHHHHHHHHHHHHHGGGSSSCCEE----EECCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEE-EeCChhHhhhhhhhHHhhhhhcCCCeEE----EeCCHHHhCCC
Confidence 7999999999999999999887 64 5544 444332121 1111 1 1111 11446789999
Q ss_pred CEEEEccCCchH------------HHHHH----HHHhcCCCCcEEEEec
Q 021114 180 DLVLLLISDAAQ------------ADNYE----KIFSCMKPNSILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~------------~~vl~----ei~~~lk~gaiVi~~~ 212 (317)
|+||++.+.... ..++. ++.++ .|+++++.++
T Consensus 76 DvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~-~p~a~viv~t 123 (317)
T 3d0o_A 76 DLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMAS-KFDGIFLVAT 123 (317)
T ss_dssp SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-TCCSEEEECS
T ss_pred CEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh-CCCcEEEEec
Confidence 999999854321 12333 34444 6788877654
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0043 Score=59.17 Aligned_cols=94 Identities=16% Similarity=0.140 Sum_probs=59.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCC-------------CcCCHHhhcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENG-------------TLGDIYETIS 177 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~-------------~~~~~~e~v~ 177 (317)
.||||+|+|.||..+++.|.+. .+++++...+... .....+.+.|+..... ...+.+++.+
T Consensus 2 ikVgIiGaG~iG~~~~r~L~~~-----p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~ 76 (340)
T 1b7g_O 2 VNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIK 76 (340)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHH
T ss_pred eEEEEEecCHHHHHHHHHHHcC-----CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhc
Confidence 5899999999999999999765 1456544444332 2334455555432000 0113445556
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|+|+.++|.....+..+... +.|+.+++.++
T Consensus 77 ~vDvV~~aTp~~~s~~~a~~~~---~aG~kvV~~sa 109 (340)
T 1b7g_O 77 TSDIVVDTTPNGVGAQYKPIYL---QLQRNAIFQGG 109 (340)
T ss_dssp HCSEEEECCSTTHHHHHHHHHH---HTTCEEEECTT
T ss_pred CCCEEEECCCCchhHHHHHHHH---HcCCeEEEeCC
Confidence 8999999999987776665443 34666666554
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0056 Score=60.81 Aligned_cols=88 Identities=19% Similarity=0.140 Sum_probs=56.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHC-C---------------------ceecCCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAA-G---------------------FTEENGT 168 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~-G---------------------~~~~~~~ 168 (317)
.+|||||+|.||..++..+.+. .+++++...+.+.+..+.+ .+. | ... .
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~-----~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~---v 95 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARM-----QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIA---V 95 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTS-----SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEE---E
T ss_pred eEEEEECChHHHHHHHHHHhhC-----CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCce---E
Confidence 5899999999999999988764 1566654455544333333 232 4 110 2
Q ss_pred cCCHHhhcC--cCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEE
Q 021114 169 LGDIYETIS--GSDLVLLLISDAA-QADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 169 ~~~~~e~v~--~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~ 210 (317)
+.|.+++++ +.|+|++++|... +.++..+ .|+.|+-|+.
T Consensus 96 ~~D~eeLL~d~dIDaVviaTp~p~~H~e~a~~---AL~AGKHVv~ 137 (446)
T 3upl_A 96 TDDNDLILSNPLIDVIIDATGIPEVGAETGIA---AIRNGKHLVM 137 (446)
T ss_dssp ESCHHHHHTCTTCCEEEECSCCHHHHHHHHHH---HHHTTCEEEE
T ss_pred ECCHHHHhcCCCCCEEEEcCCChHHHHHHHHH---HHHcCCcEEe
Confidence 468999987 5899999998753 3444333 3445666653
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0031 Score=59.54 Aligned_cols=67 Identities=15% Similarity=0.150 Sum_probs=44.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHH-HHHH--CC------ceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARA--AG------FTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~~--~G------~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.+|.+++..|... +. ++.+.+. +.+..+ .+.+ .. ... ..+..+++++||
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di-~~~~~~g~~~dl~~~~~~~~~~~v----~~~~~~a~~~aD 74 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDV-VKDRTKGDALDLEDAQAFTAPKKI----YSGEYSDCKDAD 74 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECS-SHHHHHHHHHHHHGGGGGSCCCEE----EECCGGGGTTCS
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeC-CchHHHHHHHHHHHHHHhcCCeEE----EECCHHHhCCCC
Confidence 7999999999999999999887 65 5555544 332221 1222 11 111 124467899999
Q ss_pred EEEEccCCc
Q 021114 181 LVLLLISDA 189 (317)
Q Consensus 181 vVILavP~~ 189 (317)
+||++.+..
T Consensus 75 vVii~ag~~ 83 (318)
T 1ez4_A 75 LVVITAGAP 83 (318)
T ss_dssp EEEECCCC-
T ss_pred EEEECCCCC
Confidence 999998654
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0032 Score=59.68 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=44.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccH-HHHHH--CCcee-cCC-CcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEARA--AGFTE-ENG-TLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~~--~G~~~-~~~-~~~~~~e~v~~ADvVIL 184 (317)
+||+|||.|.+|.+++..|... ++ ++.+.+. +.+.. ..+.+ ..... .+- ...+..+++++||+||+
T Consensus 10 ~KI~IiGaG~vG~~la~~l~~~------~~~~el~L~Di-~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii 82 (326)
T 2zqz_A 10 QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDI-FKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVI 82 (326)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECS-CHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHcC------CCCCEEEEEeC-CchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEE
Confidence 7999999999999999999887 64 5555444 33222 21221 22100 000 01244678999999999
Q ss_pred ccCCc
Q 021114 185 LISDA 189 (317)
Q Consensus 185 avP~~ 189 (317)
+.+..
T Consensus 83 ~ag~~ 87 (326)
T 2zqz_A 83 TAGAP 87 (326)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0012 Score=61.06 Aligned_cols=69 Identities=16% Similarity=0.171 Sum_probs=52.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
.+ +++.|||.|-+|.+++..|.+. |. +|.+++|+.++..+.+.+.+... ..+.. +.++|+||.+||
T Consensus 118 ~~-~~vlvlGaGgaarav~~~L~~~------G~~~i~v~nRt~~ka~~la~~~~~~~----~~~~~--~~~~DivInaTp 184 (271)
T 1npy_A 118 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSLE--NQQADILVNVTS 184 (271)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCCT--TCCCSEEEECSS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCcc----chhhh--cccCCEEEECCC
Confidence 56 8999999999999999999998 87 68888887555555555555432 11222 468999999999
Q ss_pred Cch
Q 021114 188 DAA 190 (317)
Q Consensus 188 ~~~ 190 (317)
...
T Consensus 185 ~gm 187 (271)
T 1npy_A 185 IGM 187 (271)
T ss_dssp TTC
T ss_pred CCc
Confidence 765
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0023 Score=63.69 Aligned_cols=99 Identities=17% Similarity=0.202 Sum_probs=59.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDL 181 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADv 181 (317)
-..+++ ++|.|||.|.+|.+++..|.+. .|++|++..|+.++..+.+...++........ ++.++++++|+
T Consensus 18 ~~~l~~-k~VlIiGAGgiG~aia~~L~~~-----~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~Dv 91 (467)
T 2axq_A 18 EGRHMG-KNVLLLGSGFVAQPVIDTLAAN-----DDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDV 91 (467)
T ss_dssp -----C-EEEEEECCSTTHHHHHHHHHTS-----TTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSE
T ss_pred ccCCCC-CEEEEECChHHHHHHHHHHHhC-----CCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCE
Confidence 356778 9999999999999999999875 04678777776433223332223321000122 34567789999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
||.++|......+.... +++|..+++..
T Consensus 92 VIn~tp~~~~~~v~~a~---l~~g~~vvd~~ 119 (467)
T 2axq_A 92 VISLIPYTFHPNVVKSA---IRTKTDVVTSS 119 (467)
T ss_dssp EEECSCGGGHHHHHHHH---HHHTCEEEECS
T ss_pred EEECCchhhhHHHHHHH---HhcCCEEEEee
Confidence 99999987654444322 23455666554
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0083 Score=56.82 Aligned_cols=106 Identities=16% Similarity=0.259 Sum_probs=81.9
Q ss_pred CCceecCCCcCCHHhhcCcCCEEEEccCCch-HHHHHHHHHhcCCCCcEEEEecCch---h-hhhhhcccCCCCCccEEE
Q 021114 160 AGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---L-GHLQSIGLDFPKNIGVIA 234 (317)
Q Consensus 160 ~G~~~~~~~~~~~~e~v~~ADvVILavP~~~-~~~vl~ei~~~lk~gaiVi~~~Gv~---l-~~~~~~~~~l~~~i~vV~ 234 (317)
.|+.. .+|-.|+++++|++|+=+|-.. +.++++++.++++.|++|..++-+. + ..++. .. ++++.+..
T Consensus 127 aGVkV----tsDD~EAvk~AEi~IlftPfG~~t~~Iakkii~~lpEgAII~nTCTipp~~ly~~le~--l~-R~DvgIsS 199 (358)
T 2b0j_A 127 VGLKV----TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKD--LG-REDLNITS 199 (358)
T ss_dssp GTCEE----ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHH--TT-CTTSEEEE
T ss_pred cCcEe----ecchHHHhcCCCEEEEecCCCCCcHHHHHHHHhhCcCCCEEecccCCCHHHHHHHHHH--hC-cccCCeec
Confidence 57764 5688899999999999999887 6689999999999999999888763 2 22232 22 67899999
Q ss_pred eccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 235 VCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 235 vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.|| +..+.+ .| .. +.-.+.+++++++...+|.++.|..
T Consensus 200 ~HP-aaVPgt-----~G-------q~--~~g~~yAtEEqIeklveLaksa~k~ 237 (358)
T 2b0j_A 200 YHP-GCVPEM-----KG-------QV--YIAEGYASEEAVNKLYEIGKIARGK 237 (358)
T ss_dssp CBC-SSCTTT-----CC-------CE--EEEESSSCHHHHHHHHHHHHHHHSC
T ss_pred cCC-CCCCCC-----CC-------cc--ccccccCCHHHHHHHHHHHHHhCCC
Confidence 999 334443 24 23 3356788899999999999999965
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0034 Score=61.38 Aligned_cols=92 Identities=17% Similarity=0.163 Sum_probs=66.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC----Cccc--------HHHHHHCCceecCCCcCCHH
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK----GSRS--------FAEARAAGFTEENGTLGDIY 173 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~----~~~s--------~~~A~~~G~~~~~~~~~~~~ 173 (317)
.++. .+|.|+|.|.+|.++|+.|... |. +|++.+++ ..+. ...+.+.... ....+++
T Consensus 189 ~l~~-~kVVv~GAGaAG~~iAkll~~~------G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~---~~~~~L~ 258 (388)
T 1vl6_A 189 KIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPE---RLSGDLE 258 (388)
T ss_dssp CTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTT---CCCSCHH
T ss_pred CCCC-cEEEEECCCHHHHHHHHHHHhC------CCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhcc---CchhhHH
Confidence 6777 8999999999999999999998 88 67777776 3221 2334332211 1246899
Q ss_pred hhcCcCCEEEEccCCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 174 ETISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
|+++++|++|=+..+ .++ +++...|+++.+|.+.+
T Consensus 259 eav~~ADVlIG~Sap----~l~t~emVk~Ma~~pIIfalS 294 (388)
T 1vl6_A 259 TALEGADFFIGVSRG----NILKPEWIKKMSRKPVIFALA 294 (388)
T ss_dssp HHHTTCSEEEECSCS----SCSCHHHHTTSCSSCEEEECC
T ss_pred HHHccCCEEEEeCCC----CccCHHHHHhcCCCCEEEEcC
Confidence 999999999988654 333 35666688888887665
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.003 Score=59.71 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=43.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-cc-cHHHHHH---------CCceecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-SR-SFAEARA---------AGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-~~-s~~~A~~---------~G~~~~~~~~~~~~e~v~~A 179 (317)
+||+|||.|.||.++|..|... |+ ++++.++.. +. ....+.+ ..... ..++..+.+++|
T Consensus 9 ~kv~ViGaG~vG~~ia~~l~~~------g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i---~~t~d~~a~~~a 79 (315)
T 3tl2_A 9 KKVSVIGAGFTGATTAFLLAQK------ELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANI---IGTSDYADTADS 79 (315)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCE---EEESCGGGGTTC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEE---EEcCCHHHhCCC
Confidence 7999999999999999999998 88 776665542 11 1111110 01000 012235788999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+||++.
T Consensus 80 DvVIiaa 86 (315)
T 3tl2_A 80 DVVVITA 86 (315)
T ss_dssp SEEEECC
T ss_pred CEEEEeC
Confidence 9999997
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0029 Score=58.81 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=91.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH------HHH-HHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF------AEA-RAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~------~~A-~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+||+|+| .|.||..+++.+.+. .+++++...+++.... +.+ ...|+.. ..++++++.++|+||
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~-----~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v----~~dl~~ll~~~DVVI 78 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAA-----PDATLVGALDRTGSPQLGQDAGAFLGKQTGVAL----TDDIERVCAEADYLI 78 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHC-----TTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBC----BCCHHHHHHHCSEEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEEecCcccccccHHHHhCCCCCcee----cCCHHHHhcCCCEEE
Confidence 6899999 999999999998765 1667655555432110 000 0013332 468999999999999
Q ss_pred EccCCchHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhhccccc--CCC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEIN--GAG 258 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~--g~G 258 (317)
-.+++....+++...+.+ |. +|+=+.|+.-..++..... .+... +-..||..--. +-.+-+.-.... ++.
T Consensus 79 DfT~p~a~~~~~~~al~~---G~~vVigTTG~s~~~~~~L~~a-a~~~~-vv~a~N~s~Gv~l~~~~~~~aa~~l~~~~d 153 (272)
T 4f3y_A 79 DFTLPEGTLVHLDAALRH---DVKLVIGTTGFSEPQKAQLRAA-GEKIA-LVFSANMSVGVNVTMKLLEFAAKQFAQGYD 153 (272)
T ss_dssp ECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHHH-TTTSE-EEECSCCCHHHHHHHHHHHHHHHHTSSSCE
T ss_pred EcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHHH-hccCC-EEEECCCCHHHHHHHHHHHHHHHhcCcCCC
Confidence 999988877777655443 33 4444567753322210012 23444 46677765332 000000000011 122
Q ss_pred ceEEEEecc----C-CCHHHHHHHHHHHHHcCCC
Q 021114 259 INSSFAVHQ----D-VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 259 ~~~iitp~~----d-~~~ea~e~a~~l~~alG~~ 287 (317)
+- |+--|+ | +++.++.+++.+.+.+|..
T Consensus 154 ie-i~E~HH~~K~DaPSGTA~~la~~i~~~~~~~ 186 (272)
T 4f3y_A 154 IE-IIEAHHRHKVDAPSGTALMMGETIAAATGRS 186 (272)
T ss_dssp EE-EEEEECTTCCSSSCHHHHHHHHHHHHTTTCC
T ss_pred EE-EEEecCCCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 22 234444 2 4789999999998888753
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0016 Score=61.59 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=53.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC---CcccHHHHHH----CCceecCCCcCCH---Hh
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GSRSFAEARA----AGFTEENGTLGDI---YE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~---~~~s~~~A~~----~G~~~~~~~~~~~---~e 174 (317)
.+++| +++.|+|.|-+|.+++..|.+. |. +|++.+|+ .++..+.+.+ .+.........+. .+
T Consensus 144 ~~l~g-k~~lVlGAGGaaraia~~L~~~------G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~ 216 (312)
T 3t4e_A 144 FDMRG-KTMVLLGAGGAATAIGAQAAIE------GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE 216 (312)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHc------CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh
Confidence 45789 9999999999999999999998 98 78888887 3333333322 1211000012343 56
Q ss_pred hcCcCCEEEEccCCch
Q 021114 175 TISGSDLVLLLISDAA 190 (317)
Q Consensus 175 ~v~~ADvVILavP~~~ 190 (317)
.+.++|+||-+||...
T Consensus 217 ~l~~~DiIINaTp~Gm 232 (312)
T 3t4e_A 217 ALASADILTNGTKVGM 232 (312)
T ss_dssp HHHHCSEEEECSSTTS
T ss_pred hccCceEEEECCcCCC
Confidence 6889999999999764
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0078 Score=57.63 Aligned_cols=92 Identities=22% Similarity=0.148 Sum_probs=58.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHH--------------------CCceecCCCcC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARA--------------------AGFTEENGTLG 170 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~--------------------~G~~~~~~~~~ 170 (317)
.||||+|+|.||+.+++.|... .+++++...+....... .+.. .++.. ..
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~-----~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v----~~ 73 (343)
T 2yyy_A 3 AKVLINGYGSIGKRVADAVSMQ-----DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPV----EG 73 (343)
T ss_dssp EEEEEECCSHHHHHHHHHHHHS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCC----CC
T ss_pred eEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEE----CC
Confidence 5899999999999999998764 14665444332222111 1111 12221 12
Q ss_pred CHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.+++..++|+|+.|+|.....+..+ ..+++.|+.|++.++.
T Consensus 74 ~~~~~~~~vDiV~eatg~~~s~~~a~--~~~l~aG~~VI~sap~ 115 (343)
T 2yyy_A 74 TILDIIEDADIVVDGAPKKIGKQNLE--NIYKPHKVKAILQGGE 115 (343)
T ss_dssp BGGGTGGGCSEEEECCCTTHHHHHHH--HTTTTTTCEEEECTTS
T ss_pred chHHhccCCCEEEECCCccccHHHHH--HHHHHCCCEEEECCCc
Confidence 34555679999999999876555443 4577889888877654
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0033 Score=59.83 Aligned_cols=98 Identities=15% Similarity=0.193 Sum_probs=57.5
Q ss_pred CCEEEEEeccchHHHHHHHHHhh---hhhhcCCceEEEEecCCccc-----HH--HHHH--CCceecCCCcCCHHhhcC-
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRS-----FA--EARA--AGFTEENGTLGDIYETIS- 177 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~---~~~~~~G~~Vivg~r~~~~s-----~~--~A~~--~G~~~~~~~~~~~~e~v~- 177 (317)
|.+|||||+|.||..+++.|.+. ++..|.+++++...+++... .. .+.. .+... ...|++++++
T Consensus 2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~---~~~d~~~ll~~ 78 (327)
T 3do5_A 2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLR---DDAKAIEVVRS 78 (327)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCS---BCCCHHHHHHH
T ss_pred cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCcccc---CCCCHHHHhcC
Confidence 57999999999999999999764 22223366655444433211 11 1111 11110 0138888885
Q ss_pred -cCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEEe
Q 021114 178 -GSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 178 -~ADvVILavP~~~~-~~vl~ei~~~lk~gaiVi~~ 211 (317)
+.|+|+.++|+..+ .+..+-+...|+.|+-|+..
T Consensus 79 ~~iDvVv~~tp~~~h~~~a~~~~~~aL~aGkhVv~~ 114 (327)
T 3do5_A 79 ADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTS 114 (327)
T ss_dssp SCCSEEEECCCCC----CHHHHHHHHHTTTCEEEEC
T ss_pred CCCCEEEECCCCcccchhHHHHHHHHHHCCCeEEec
Confidence 58999999998865 12233344556677777655
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00097 Score=61.49 Aligned_cols=93 Identities=12% Similarity=0.106 Sum_probs=61.5
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc---------eecCCCcCCHHhhcC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---------TEENGTLGDIYETIS 177 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---------~~~~~~~~~~~e~v~ 177 (317)
+++| +++.|+|.|-||.++|..|.+. | +|++.+|+.++..+.+.+.+. .+ ..+..+.+.
T Consensus 125 ~l~~-k~vlV~GaGgiG~aia~~L~~~------G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d----~~~~~~~~~ 192 (287)
T 1nvt_A 125 RVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVK----FSGLDVDLD 192 (287)
T ss_dssp CCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEE----EECTTCCCT
T ss_pred CcCC-CEEEEECchHHHHHHHHHHHHC------C-CEEEEECCHHHHHHHHHHHhhhcccccceeEE----EeeHHHhhC
Confidence 5789 9999999999999999999999 9 988877764332223222110 11 223356778
Q ss_pred cCCEEEEccCCchHHH----HHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQAD----NYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~----vl~ei~~~lk~gaiVi~~~ 212 (317)
++|+||.++|...... .+. -.+.++++.+++|+.
T Consensus 193 ~~DilVn~ag~~~~~~~~~~~~~-~~~~l~~~~~v~Dv~ 230 (287)
T 1nvt_A 193 GVDIIINATPIGMYPNIDVEPIV-KAEKLREDMVVMDLI 230 (287)
T ss_dssp TCCEEEECSCTTCTTCCSSCCSS-CSTTCCSSSEEEECC
T ss_pred CCCEEEECCCCCCCCCCCCCCCC-CHHHcCCCCEEEEee
Confidence 9999999999754321 010 023466777777654
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0022 Score=63.74 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=46.6
Q ss_pred CCCCEEEEEeccch--HHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---------CceecCCCcCCHHhhcC
Q 021114 109 NGINQIGVIGWGSQ--GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGTLGDIYETIS 177 (317)
Q Consensus 109 ~GikkIGIIG~G~m--G~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---------G~~~~~~~~~~~~e~v~ 177 (317)
+. +||+|||.|+| |.++++.|.... .-.| +|++.+.. +...+..... .+. ...|.+|+++
T Consensus 4 ~~-~KIaVIGaGs~g~g~~la~~l~~~~--~~~g-eV~L~Di~-~e~le~~~~~~~~l~~~~~~I~----~TtD~~eAl~ 74 (450)
T 3fef_A 4 DQ-IKIAYIGGGSQGWARSLMSDLSIDE--RMSG-TVALYDLD-FEAAQKNEVIGNHSGNGRWRYE----AVSTLKKALS 74 (450)
T ss_dssp CC-EEEEEETTTCSSHHHHHHHHHHHCS--SCCE-EEEEECSS-HHHHHHHHHHHTTSTTSCEEEE----EESSHHHHHT
T ss_pred CC-CEEEEECCChhHhHHHHHHHHHhcc--ccCC-eEEEEeCC-HHHHHHHHHHHHHHhccCCeEE----EECCHHHHhc
Confidence 34 79999999998 578888887630 0015 67655544 3322222111 122 2468999999
Q ss_pred cCCEEEEccCCc
Q 021114 178 GSDLVLLLISDA 189 (317)
Q Consensus 178 ~ADvVILavP~~ 189 (317)
+||+||+++++.
T Consensus 75 dADfVI~airvG 86 (450)
T 3fef_A 75 AADIVIISILPG 86 (450)
T ss_dssp TCSEEEECCCSS
T ss_pred CCCEEEeccccC
Confidence 999999999853
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0017 Score=62.97 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=52.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCC---ceEEEEecCCcccHHHHHHC------CceecCCCc---CCHHhhcCc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARAA------GFTEENGTL---GDIYETISG 178 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G---~~Vivg~r~~~~s~~~A~~~------G~~~~~~~~---~~~~e~v~~ 178 (317)
|++|+|||.|.+|..+++.|.+. | .+|++..|+.++..+.+.+. .+....... .++++++++
T Consensus 1 M~kVlIiGaGgiG~~ia~~L~~~------g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~ 74 (405)
T 4ina_A 1 MAKVLQIGAGGVGGVVAHKMAMN------REVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINE 74 (405)
T ss_dssp -CEEEEECCSHHHHHHHHHHHTC------TTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHh
Confidence 47999999999999999999987 7 26777766544333333221 121000011 235567777
Q ss_pred --CCEEEEccCCchHHHHHHH
Q 021114 179 --SDLVLLLISDAAQADNYEK 197 (317)
Q Consensus 179 --ADvVILavP~~~~~~vl~e 197 (317)
+|+||.++|+.....+.+.
T Consensus 75 ~~~DvVin~ag~~~~~~v~~a 95 (405)
T 4ina_A 75 VKPQIVLNIALPYQDLTIMEA 95 (405)
T ss_dssp HCCSEEEECSCGGGHHHHHHH
T ss_pred hCCCEEEECCCcccChHHHHH
Confidence 8999999998776555553
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00053 Score=61.79 Aligned_cols=83 Identities=10% Similarity=0.213 Sum_probs=55.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
++++|||+|++|.++++.+... ..|++++...|.++. ....+.-.|+... ...+++++++ +.|++++++|.
T Consensus 85 ~~V~IvGaG~lG~aLa~~~~~~----~~g~~iVg~~D~dp~~kiG~~~i~GvpV~--~~~dL~~~v~~~~Id~vIIAvPs 158 (212)
T 3keo_A 85 TNVMLVGCGNIGRALLHYRFHD----RNKMQISMAFDLDSNDLVGKTTEDGIPVY--GISTINDHLIDSDIETAILTVPS 158 (212)
T ss_dssp EEEEEECCSHHHHHHTTCCCCT----TSSEEEEEEEECTTSTTTTCBCTTCCBEE--EGGGHHHHC-CCSCCEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHhhhcc----cCCeEEEEEEeCCchhccCceeECCeEEe--CHHHHHHHHHHcCCCEEEEecCc
Confidence 7899999999999999874211 127887666666543 2211011355431 1457888887 49999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
....++.+.+.+
T Consensus 159 ~~aq~v~d~lv~ 170 (212)
T 3keo_A 159 TEAQEVADILVK 170 (212)
T ss_dssp GGHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 887777776554
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0032 Score=62.09 Aligned_cols=79 Identities=20% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcC---CHHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLG---DIYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~---~~~e~v~~ADvVIL 184 (317)
++ ++|.|+|.|.||.++++.|.+. |++|++..|..++..+.+.+.+ +........ ++.++++++|+||.
T Consensus 2 ~~-k~VlViGaG~iG~~ia~~L~~~------G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn 74 (450)
T 1ff9_A 2 AT-KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVIS 74 (450)
T ss_dssp CC-CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEE
Confidence 35 8999999999999999999988 8888777765332211121122 210000122 34477889999999
Q ss_pred ccCCchHHHH
Q 021114 185 LISDAAQADN 194 (317)
Q Consensus 185 avP~~~~~~v 194 (317)
++|......+
T Consensus 75 ~a~~~~~~~i 84 (450)
T 1ff9_A 75 LIPYTFHATV 84 (450)
T ss_dssp CCC--CHHHH
T ss_pred CCccccchHH
Confidence 9998655443
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0082 Score=56.41 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=44.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCC--ceEEEEecCCcccHHHHHH--CCceec--CCC--cCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARA--AGFTEE--NGT--LGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A~~--~G~~~~--~~~--~~~~~e~v~~ADvV 182 (317)
|||+|||. |.+|.+++..|... | .++.+.+... ....+.+ ...... ..+ ..+.++++++||+|
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~------~~~~ev~L~Di~~--~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvV 72 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLYDIAH--TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEEESSS--HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCcEEEEEeCCc--cHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEE
Confidence 58999998 99999999999877 6 4665555443 2222222 221100 000 13678889999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
|++..
T Consensus 73 vi~ag 77 (314)
T 1mld_A 73 VIPAG 77 (314)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99874
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0035 Score=58.94 Aligned_cols=68 Identities=22% Similarity=0.184 Sum_probs=43.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CC------ceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG------FTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G------~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|.+|.+++..|... +. ++.+.+...++....+.+ .. ... .. +..+++++||+
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v---~~-~~~~a~~~aD~ 70 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALL------GVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWV---WA-GSYGDLEGARA 70 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEE---EE-CCGGGGTTEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEE---EE-CCHHHhCCCCE
Confidence 6899999999999999999887 53 555544432211112222 11 111 01 23678999999
Q ss_pred EEEccCCc
Q 021114 182 VLLLISDA 189 (317)
Q Consensus 182 VILavP~~ 189 (317)
||++.+..
T Consensus 71 Vii~ag~~ 78 (310)
T 2xxj_A 71 VVLAAGVA 78 (310)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99987543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0069 Score=54.78 Aligned_cols=85 Identities=14% Similarity=0.151 Sum_probs=58.7
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|..-++.|.+. |.+|++......+..+...+.| +....+.. + ++-+.++|+||
T Consensus 26 fl~L~g-k~VLVVGgG~va~~ka~~Ll~~------GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~-~-~~dL~~adLVI 96 (223)
T 3dfz_A 26 MLDLKG-RSVLVVGGGTIATRRIKGFLQE------GAAITVVAPTVSAEINEWEAKGQLRVKRKKV-G-EEDLLNVFFIV 96 (223)
T ss_dssp EECCTT-CCEEEECCSHHHHHHHHHHGGG------CCCEEEECSSCCHHHHHHHHTTSCEEECSCC-C-GGGSSSCSEEE
T ss_pred EEEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCCCHHHHHHHHcCCcEEEECCC-C-HhHhCCCCEEE
Confidence 468999 9999999999999999999999 9888776654333333333333 32211111 2 34578999999
Q ss_pred EccCCchHHHHHHHH
Q 021114 184 LLISDAAQADNYEKI 198 (317)
Q Consensus 184 LavP~~~~~~vl~ei 198 (317)
.++.+......+.+.
T Consensus 97 aAT~d~~~N~~I~~~ 111 (223)
T 3dfz_A 97 VATNDQAVNKFVKQH 111 (223)
T ss_dssp ECCCCTHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHH
Confidence 998887665555444
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00068 Score=60.80 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=54.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVILavP~~~ 190 (317)
++++|||+|++|..+++.+... . |++++...|.++..... ...|+... ...+++++++ +.|+|++++|...
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~----~-g~~iVg~~D~dp~k~g~-~i~gv~V~--~~~dl~ell~~~ID~ViIA~Ps~~ 152 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFG----E-SFELRGFFDVDPEKVGR-PVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 152 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC----S-SEEEEEEEESCTTTTTC-EETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred CEEEEECccHHHHHHHHhHhhc----C-CcEEEEEEeCCHHHHhh-hhcCCeee--cHHhHHHHHHcCCCEEEEeCCchh
Confidence 6899999999999999863322 2 67766666654432111 11233211 1457888886 5999999999988
Q ss_pred HHHHHHHHHh
Q 021114 191 QADNYEKIFS 200 (317)
Q Consensus 191 ~~~vl~ei~~ 200 (317)
..++.+.+..
T Consensus 153 ~~ei~~~l~~ 162 (211)
T 2dt5_A 153 AQKAADLLVA 162 (211)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776544
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0035 Score=56.88 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=56.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------cccHHHHHHC----
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARAA---- 160 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~~~---- 160 (317)
...|++ ++|.|||+|-+|..+|++|... |. ++++.++.. .+....+.+.
T Consensus 26 q~~l~~-~~VlVvG~Gg~G~~va~~La~~------Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n 98 (249)
T 1jw9_B 26 QEALKD-SRVLIVGLGGLGCAASQYLASA------GVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN 98 (249)
T ss_dssp HHHHHH-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhC-CeEEEEeeCHHHHHHHHHHHHc------CCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC
Confidence 466788 9999999999999999999998 87 565555442 2222111111
Q ss_pred -Cceec--CCCcC--CHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 021114 161 -GFTEE--NGTLG--DIYETISGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 161 -G~~~~--~~~~~--~~~e~v~~ADvVILavP~~~~~~vl~ei~ 199 (317)
++..+ ..... +.++.++++|+||.+++.......+.+..
T Consensus 99 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~~~~l~~~~ 142 (249)
T 1jw9_B 99 PHIAITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGC 142 (249)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHTSSEEEECCSSHHHHHHHHHHH
T ss_pred CCcEEEEEeccCCHhHHHHHHhCCCEEEEeCCCHHHHHHHHHHH
Confidence 21110 01111 34567889999999998766555666543
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0062 Score=58.09 Aligned_cols=71 Identities=23% Similarity=0.207 Sum_probs=44.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHH--HCC--ceec--CCCcCCHHhhcCcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE--NGTLGDIYETISGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~--~~~~~~~~e~v~~A 179 (317)
... +||+|||.|.||.++|..|... |. ++++.+....+....+. ... +... -....+.+ .+++|
T Consensus 17 ~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~a 88 (331)
T 4aj2_A 17 VPQ-NKITVVGVGAVGMACAISILMK------DLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANS 88 (331)
T ss_dssp CCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTE
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCC
Confidence 445 8999999999999999999887 76 66555543222222221 111 1100 00123554 68999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+||++.
T Consensus 89 DiVvi~a 95 (331)
T 4aj2_A 89 KLVIITA 95 (331)
T ss_dssp EEEEECC
T ss_pred CEEEEcc
Confidence 9999985
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0068 Score=56.52 Aligned_cols=92 Identities=11% Similarity=0.190 Sum_probs=61.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hh-cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ET-ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~-v~~ADvVILavP 187 (317)
++|.|+|+|..|..+++.|.+. |+ +++. +++++..+ +.+.|+..-.+...+.+ ++ +++||.|+++++
T Consensus 116 ~~viI~G~G~~g~~l~~~L~~~------g~-v~vi-d~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~ 186 (336)
T 1lnq_A 116 RHVVICGWSESTLECLRELRGS------EV-FVLA-EDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE 186 (336)
T ss_dssp CEEEEESCCHHHHHHHTTGGGS------CE-EEEE-SCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------Cc-EEEE-eCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence 6899999999999999999988 88 6544 45455555 65666543222233433 34 789999999999
Q ss_pred CchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 188 DAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
++...-..-..+..+.++ .++.-+.
T Consensus 187 ~d~~n~~~~~~ar~~~~~~~iiar~~ 212 (336)
T 1lnq_A 187 SDSETIHCILGIRKIDESVRIIAEAE 212 (336)
T ss_dssp SHHHHHHHHHHHHTTCTTSEEEEECS
T ss_pred ccHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 875544444555566665 4444443
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0053 Score=58.14 Aligned_cols=76 Identities=14% Similarity=0.191 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |++.|||-+ ..|..+|.-|... |..|.+...+ ..++.+.+++||+||.
T Consensus 175 i~l~G-k~vvViGRS~iVGkPla~LL~~~------~ATVTi~Hs~-------------------T~dl~~~~~~ADIvV~ 228 (303)
T 4b4u_A 175 IEIAG-KHAVVVGRSAILGKPMAMMLLQA------NATVTICHSR-------------------TQNLPELVKQADIIVG 228 (303)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHHTCSEEEE
T ss_pred CCCCC-CEEEEEeccccccchHHHHHHhc------CCEEEEecCC-------------------CCCHHHHhhcCCeEEe
Confidence 47899 999999966 5799999999988 8888765432 2378889999999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++.-... +. .+++|+|++|+|++
T Consensus 229 A~G~p~~---i~--~d~vk~GavVIDVG 251 (303)
T 4b4u_A 229 AVGKAEL---IQ--KDWIKQGAVVVDAG 251 (303)
T ss_dssp CSCSTTC---BC--GGGSCTTCEEEECC
T ss_pred ccCCCCc---cc--cccccCCCEEEEec
Confidence 9875432 22 24679999999986
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0081 Score=57.31 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=58.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC---CcccHHHHHHCCcee--------cCCCc--CCHHhhcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK---GSRSFAEARAAGFTE--------ENGTL--GDIYETIS 177 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~---~~~s~~~A~~~G~~~--------~~~~~--~~~~e~v~ 177 (317)
+||+||| .|.+|..+++.|.+. .+++++...++ ..+.... ..+... .+... .+.+++++
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~-----p~~ev~~i~~s~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADH-----PMFELTALAASERSAGKKYKD--ACYWFQDRDIPENIKDMVVIPTDPKHEEF 81 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC-----SSEEEEEEEECTTTTTSBHHH--HSCCCCSSCCCHHHHTCBCEESCTTSGGG
T ss_pred ceEEEECcCCHHHHHHHHHHhcC-----CCCEEEEEEcccccccccHHH--hcccccccccccCceeeEEEeCCHHHHhc
Confidence 5899999 899999999998765 03465444332 1122211 122100 00001 24555556
Q ss_pred -cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 178 -GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 178 -~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|+|++|+|.....++...+. +.|+.|+|.+|.
T Consensus 82 ~~~DvV~~atp~~~~~~~a~~~~---~aG~~VId~s~~ 116 (354)
T 1ys4_A 82 EDVDIVFSALPSDLAKKFEPEFA---KEGKLIFSNASA 116 (354)
T ss_dssp TTCCEEEECCCHHHHHHHHHHHH---HTTCEEEECCST
T ss_pred CCCCEEEECCCchHHHHHHHHHH---HCCCEEEECCch
Confidence 8999999999887777766654 357788888774
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.013 Score=51.13 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=52.3
Q ss_pred cccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc-e--ecCCCcCCHHhhcCcC
Q 021114 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF-T--EENGTLGDIYETISGS 179 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~-~--~~~~~~~~~~e~v~~A 179 (317)
....|+| |+|.|.|. |-+|.++++.|.+. |++|++..|+.+ ..+.....++ . ..|-+ .++.+++.+.
T Consensus 15 ~~~~l~~-~~ilVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~-~~~~~~~~~~~~~~~~Dl~-~~~~~~~~~~ 85 (236)
T 3e8x_A 15 ENLYFQG-MRVLVVGANGKVARYLLSELKNK------GHEPVAMVRNEE-QGPELRERGASDIVVANLE-EDFSHAFASI 85 (236)
T ss_dssp ------C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSGG-GHHHHHHTTCSEEEECCTT-SCCGGGGTTC
T ss_pred cccCcCC-CeEEEECCCChHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHhCCCceEEEcccH-HHHHHHHcCC
Confidence 4678999 99999996 99999999999999 999877776644 3444444455 2 11212 4567788999
Q ss_pred CEEEEccCCc
Q 021114 180 DLVLLLISDA 189 (317)
Q Consensus 180 DvVILavP~~ 189 (317)
|+||.+....
T Consensus 86 D~vi~~ag~~ 95 (236)
T 3e8x_A 86 DAVVFAAGSG 95 (236)
T ss_dssp SEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999987643
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.004 Score=59.28 Aligned_cols=74 Identities=14% Similarity=0.133 Sum_probs=45.2
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHH--HCCcee-cC-CCcCCHHhhcCcCC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAGFTE-EN-GTLGDIYETISGSD 180 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G~~~-~~-~~~~~~~e~v~~AD 180 (317)
.-.+ +||+|||.|.||.++|..|... |+ ++.+.+....+....+. ...... .+ ....+..+.+++||
T Consensus 6 ~~~~-~kV~ViGaG~vG~~~a~~l~~~------~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aD 78 (326)
T 3vku_A 6 DKDH-QKVILVGDGAVGSSYAYAMVLQ------GIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDAD 78 (326)
T ss_dssp -CCC-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCS
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCC
Confidence 3456 8999999999999999999988 76 55555443221111111 111100 00 00224457899999
Q ss_pred EEEEccC
Q 021114 181 LVLLLIS 187 (317)
Q Consensus 181 vVILavP 187 (317)
+||++..
T Consensus 79 iVvi~ag 85 (326)
T 3vku_A 79 LVVITAG 85 (326)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9999864
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0062 Score=58.13 Aligned_cols=93 Identities=11% Similarity=0.049 Sum_probs=56.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee--cCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE--ENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~--~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+||+|+| .|.+|..+.+.|.+. ..++++...++.....+.....+... .+-...+.++ +.++|+|++|+|.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~ 78 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSH-----PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPH 78 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC-----TTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCc
Confidence 6899999 799999999999865 03465444443221111110011000 0111223334 5789999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
....++..... +.|+.|+|.++
T Consensus 79 ~~s~~~a~~~~---~aG~~VId~Sa 100 (345)
T 2ozp_A 79 GVFAREFDRYS---ALAPVLVDLSA 100 (345)
T ss_dssp THHHHTHHHHH---TTCSEEEECSS
T ss_pred HHHHHHHHHHH---HCCCEEEEcCc
Confidence 88777666554 56888888877
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0053 Score=60.72 Aligned_cols=73 Identities=16% Similarity=0.208 Sum_probs=50.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceecCCCcCCHH---hh-cCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIY---ET-ISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~---e~-v~~ADvVILav 186 (317)
|+|-|+|+|.+|..+|+.|.+. |++|++-+. +++..+.+ .+.++..-.+...+.+ ++ +++||+++.++
T Consensus 4 M~iiI~G~G~vG~~la~~L~~~------~~~v~vId~-d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t 76 (461)
T 4g65_A 4 MKIIILGAGQVGGTLAENLVGE------NNDITIVDK-DGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVT 76 (461)
T ss_dssp EEEEEECCSHHHHHHHHHTCST------TEEEEEEES-CHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEEC-CHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEc
Confidence 8999999999999999999988 998866554 44445444 3455422112233332 33 78999999888
Q ss_pred CCchH
Q 021114 187 SDAAQ 191 (317)
Q Consensus 187 P~~~~ 191 (317)
.++..
T Consensus 77 ~~De~ 81 (461)
T 4g65_A 77 NTDET 81 (461)
T ss_dssp SCHHH
T ss_pred CChHH
Confidence 87654
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0058 Score=58.69 Aligned_cols=91 Identities=11% Similarity=0.034 Sum_probs=57.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCcee----cCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTE----ENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~----~~~~~~~~~e~v~~ADvVILa 185 (317)
+||+|+| .|.+|..+.+.|.+. . ++++...++.+...+.....+... .+-...+ ++...++|+||+|
T Consensus 17 ~kV~IiGAtG~iG~~llr~L~~~------p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~a 89 (359)
T 1xyg_A 17 IRIGLLGASGYTGAEIVRLLANH------PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCC 89 (359)
T ss_dssp EEEEEECCSSHHHHHHHHHHHTC------SSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEEC
T ss_pred cEEEEECcCCHHHHHHHHHHHcC------CCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEc
Confidence 6899999 899999999999876 4 465544443221111221222110 0001122 4455789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|.....+.... + +.|+.++|.++
T Consensus 90 tp~~~s~~~a~~---~-~aG~~VId~sa 113 (359)
T 1xyg_A 90 LPHGTTQEIIKE---L-PTALKIVDLSA 113 (359)
T ss_dssp CCTTTHHHHHHT---S-CTTCEEEECSS
T ss_pred CCchhHHHHHHH---H-hCCCEEEECCc
Confidence 998877655443 3 67889998877
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0087 Score=58.63 Aligned_cols=75 Identities=19% Similarity=0.162 Sum_probs=53.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc---ccHHHHHHCCceecCCCcCCHHhhcCc-CC
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SD 180 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~---~s~~~A~~~G~~~~~~~~~~~~e~v~~-AD 180 (317)
+.+++| ++|.|||.|..|.+.|+.|++. |++|.+.+++.. +..+..++.|+....+ .+.++.+.+ +|
T Consensus 4 ~~~~~~-k~v~viG~G~sG~s~A~~l~~~------G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g--~~~~~~~~~~~d 74 (451)
T 3lk7_A 4 ITTFEN-KKVLVLGLARSGEAAARLLAKL------GAIVTVNDGKPFDENPTAQSLLEEGIKVVCG--SHPLELLDEDFC 74 (451)
T ss_dssp CCTTTT-CEEEEECCTTTHHHHHHHHHHT------TCEEEEEESSCGGGCHHHHHHHHTTCEEEES--CCCGGGGGSCEE
T ss_pred hhhcCC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEeCCcccCChHHHHHHhCCCEEEEC--CChHHhhcCCCC
Confidence 356789 9999999999999999999999 999877766431 2334555678754211 133456666 89
Q ss_pred EEEEc--cCC
Q 021114 181 LVLLL--ISD 188 (317)
Q Consensus 181 vVILa--vP~ 188 (317)
+||+. +|+
T Consensus 75 ~vv~spgi~~ 84 (451)
T 3lk7_A 75 YMIKNPGIPY 84 (451)
T ss_dssp EEEECTTSCT
T ss_pred EEEECCcCCC
Confidence 99985 444
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0054 Score=57.58 Aligned_cols=158 Identities=15% Similarity=0.100 Sum_probs=91.7
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH---HHHH-----HCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.||+|+| +|.||+.+++.+.+. .+++++.+.+++.... +... ..|+.. ..++++++.++|+|
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~-----~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v----~~dl~~ll~~aDVv 92 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRR-----KDVELCAVLVRKGSSFVDKDASILIGSDFLGVRI----TDDPESAFSNTEGI 92 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTC-----SSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBC----BSCHHHHTTSCSEE
T ss_pred eEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccchHHhhccCcCCcee----eCCHHHHhcCCCEE
Confidence 6899999 999999999998764 1677665555432110 0000 134432 46899999999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCc-EEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChh-h-HHHHhh-cccc-
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPS-V-RRLYVQ-GKEI- 254 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~ga-iVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~-~-r~lf~~-G~e~- 254 (317)
|-.++|....+.+...+.+ |. +|+=+.|+.-. .+++ . .+.+. +-..||..--. + -.+-+. .+-.
T Consensus 93 IDFT~p~a~~~~~~~~l~~---Gv~vViGTTG~~~e~~~~L~~---a-a~~~~-~~~a~N~SiGv~ll~~l~~~aa~~l~ 164 (288)
T 3ijp_A 93 LDFSQPQASVLYANYAAQK---SLIHIIGTTGFSKTEEAQIAD---F-AKYTT-IVKSGNMSLGVNLLANLVKRAAKALD 164 (288)
T ss_dssp EECSCHHHHHHHHHHHHHH---TCEEEECCCCCCHHHHHHHHH---H-HTTSE-EEECSCCCHHHHHHHHHHHHHHHHSC
T ss_pred EEcCCHHHHHHHHHHHHHc---CCCEEEECCCCCHHHHHHHHH---H-hCcCC-EEEECCCcHHHHHHHHHHHHHHHhcC
Confidence 9999888776666654443 43 44445677432 2222 1 12344 46777765332 0 001111 0000
Q ss_pred cCCCceEEEEecc----C-CCHHHHHHHHHHHHHcCCC
Q 021114 255 NGAGINSSFAVHQ----D-VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 255 ~g~G~~~iitp~~----d-~~~ea~e~a~~l~~alG~~ 287 (317)
.++.+-. +--|. | +++.++.+++.+.+..|..
T Consensus 165 ~~~dieI-iE~HH~~K~DaPSGTA~~la~~i~~~~~~~ 201 (288)
T 3ijp_A 165 DDFDIEI-YEMHHANKVDSPSGTALLLGQAAAEGRNIM 201 (288)
T ss_dssp TTSEEEE-EEEECTTCCCSSCHHHHHHHHHHHHHTTSC
T ss_pred CCCCEEE-EEccCCCCCCCCCHHHHHHHHHHHHHhCCC
Confidence 1122222 33343 2 6689999999999988843
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.012 Score=56.36 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=58.8
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC---c--ccHHHHH--HCCceecCCCcC---CHHhhcCcC
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---S--RSFAEAR--AAGFTEENGTLG---DIYETISGS 179 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~---~--~s~~~A~--~~G~~~~~~~~~---~~~e~v~~A 179 (317)
|+||+||| .|.+|..+.+.|.+. .++++.....+. + +.....- -.|..+ -... +.+++++++
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~-----p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~--~~v~~~~~~~~~~~~~ 76 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRH-----PHMNITALTVSAQSNDAGKLISDLHPQLKGIVE--LPLQPMSDISEFSPGV 76 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCC--CBEEEESSGGGTCTTC
T ss_pred ceEEEEECCCChHHHHHHHHHHhC-----CCCcEEEEEecCchhhcCCchHHhCccccCccc--eeEeccCCHHHHhcCC
Confidence 47899999 699999999998874 145554333222 1 2222110 012210 0111 345555899
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+||+|+|.....++.+++. +.|+.++|.++-
T Consensus 77 Dvvf~a~p~~~s~~~~~~~~---~~g~~vIDlSa~ 108 (337)
T 3dr3_A 77 DVVFLATAHEVSHDLAPQFL---EAGCVVFDLSGA 108 (337)
T ss_dssp SEEEECSCHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CEEEECCChHHHHHHHHHHH---HCCCEEEEcCCc
Confidence 99999999887777776654 468889987763
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.013 Score=58.16 Aligned_cols=94 Identities=13% Similarity=0.147 Sum_probs=66.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc---eEEEEe----cC----Cccc---HH-----HHHHCCceecC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGL----RK----GSRS---FA-----EARAAGFTEEN 166 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~----r~----~~~s---~~-----~A~~~G~~~~~ 166 (317)
..+++ ++|.|+|.|..|.+++..|.+. |. ++++.+ |+ .... +. .+......
T Consensus 182 ~~l~~-~rvlvlGAGgAg~aia~~L~~~------G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~--- 251 (439)
T 2dvm_A 182 KKISE-ITLALFGAGAAGFATLRILTEA------GVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGE--- 251 (439)
T ss_dssp CCTTT-CCEEEECCSHHHHHHHHHHHHT------TCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTT---
T ss_pred CCccC-CEEEEECccHHHHHHHHHHHHc------CCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccc---
Confidence 46788 9999999999999999999998 87 688888 65 2211 11 01111110
Q ss_pred CCcCCHHhhcCcCCEEEEccCC--chHHHHHHHHHhcCCCCcEEEEec
Q 021114 167 GTLGDIYETISGSDLVLLLISD--AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 167 ~~~~~~~e~v~~ADvVILavP~--~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
....++.|+++++|+||-++|. ....+ +....|+++.+|.|..
T Consensus 252 ~~~~~L~e~l~~aDVlInaT~~~~G~~~~---e~v~~m~~~~iVfDLy 296 (439)
T 2dvm_A 252 NIEGGPQEALKDADVLISFTRPGPGVIKP---QWIEKMNEDAIVFPLA 296 (439)
T ss_dssp CCCSSHHHHHTTCSEEEECSCCCSSSSCH---HHHTTSCTTCEEEECC
T ss_pred cccccHHHHhccCCEEEEcCCCccCCCCh---HHHHhcCCCCEEEECC
Confidence 0134788999999999999998 44432 3456688888888884
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.016 Score=57.35 Aligned_cols=91 Identities=16% Similarity=0.248 Sum_probs=56.0
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hh-hhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~-~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILa 185 (317)
.+|||||+|.+|..+++.|++. +. ..+.+++++...+++....+.. ..+... ..++++++. +.|+|+.+
T Consensus 11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~-~~~~~~----~~d~~ell~d~diDvVve~ 85 (444)
T 3mtj_A 11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEAL-AGGLPL----TTNPFDVVDDPEIDIVVEL 85 (444)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHH-HTTCCE----ESCTHHHHTCTTCCEEEEC
T ss_pred ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhh-cccCcc----cCCHHHHhcCCCCCEEEEc
Confidence 4799999999999999888652 11 1233566554444433222211 123222 468889886 57999999
Q ss_pred cCC-chHHHHHHHHHhcCCCCcEEEE
Q 021114 186 ISD-AAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 186 vP~-~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
+|. ..+.+++.+. |+.|+-|+.
T Consensus 86 tp~~~~h~~~~~~A---L~aGKhVvt 108 (444)
T 3mtj_A 86 IGGLEPARELVMQA---IANGKHVVT 108 (444)
T ss_dssp CCSSTTHHHHHHHH---HHTTCEEEE
T ss_pred CCCchHHHHHHHHH---HHcCCEEEE
Confidence 996 6666655443 344665553
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0036 Score=57.83 Aligned_cols=78 Identities=14% Similarity=-0.021 Sum_probs=52.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|+|++||+|+||..+++. + +++++..++ ++.. +.|... +.|+++++.++|+|+-|.+..+.
T Consensus 13 ~rV~i~G~GaIG~~v~~~-~--------~leLv~v~~--~k~g----elgv~a----~~d~d~lla~pD~VVe~A~~~av 73 (253)
T 1j5p_A 13 MTVLIIGMGNIGKKLVEL-G--------NFEKIYAYD--RISK----DIPGVV----RLDEFQVPSDVSTVVECASPEAV 73 (253)
T ss_dssp CEEEEECCSHHHHHHHHH-S--------CCSEEEEEC--SSCC----CCSSSE----ECSSCCCCTTCCEEEECSCHHHH
T ss_pred ceEEEECcCHHHHHHHhc-C--------CcEEEEEEe--cccc----ccCcee----eCCHHHHhhCCCEEEECCCHHHH
Confidence 899999999999999997 2 455433333 2211 125432 46788888899999999877655
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021114 192 ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~ 211 (317)
.+.+. +.|+.|.-|+..
T Consensus 74 ~e~~~---~iL~aG~dvv~~ 90 (253)
T 1j5p_A 74 KEYSL---QILKNPVNYIII 90 (253)
T ss_dssp HHHHH---HHTTSSSEEEEC
T ss_pred HHHHH---HHHHCCCCEEEc
Confidence 44444 445667655543
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.025 Score=52.92 Aligned_cols=70 Identities=17% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEc--
Q 021114 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLL-- 185 (317)
Q Consensus 111 ikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILa-- 185 (317)
+|+|.|||.|-+|.+ +|+.|++. |++|.+.+++.. ...+..++.|+....+ .+.+++. .++|+||+.
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~------G~~V~~~D~~~~~~~~~~L~~~gi~v~~g--~~~~~l~~~~~d~vV~Spg 75 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEA------GFEVSGCDAKMYPPMSTQLEALGIDVYEG--FDAAQLDEFKADVYVIGNV 75 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHT------TCEEEEEESSCCTTHHHHHHHTTCEEEES--CCGGGGGSCCCSEEEECTT
T ss_pred CcEEEEEEECHHHHHHHHHHHHhC------CCEEEEEcCCCCcHHHHHHHhCCCEEECC--CCHHHcCCCCCCEEEECCC
Confidence 389999999999996 99999999 999887776543 2344556678754211 2445554 579999985
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
+|+
T Consensus 76 i~~ 78 (326)
T 3eag_A 76 AKR 78 (326)
T ss_dssp CCT
T ss_pred cCC
Confidence 554
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.018 Score=57.57 Aligned_cols=73 Identities=16% Similarity=0.104 Sum_probs=43.4
Q ss_pred CEEEEEeccchH--HHHHHHHHhhhhhhcC-CceEEEEecCCcccHHHHH--------HCCceecCCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQG--PAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEAR--------AAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG--~AiA~~Lr~~~~~~~~-G~~Vivg~r~~~~s~~~A~--------~~G~~~~~~~~~~~~e~v~~AD 180 (317)
+||+|||.|.|| .++|..|... .+. +.+|++.++..+ ..+... ..+....-...+|.++++++||
T Consensus 4 ~KIaVIGAGsVg~g~ala~~La~~---~~l~~~eV~L~Di~~e-~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD 79 (480)
T 1obb_A 4 VKIGIIGAGSAVFSLRLVSDLCKT---PGLSGSTVTLMDIDEE-RLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDAD 79 (480)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC---GGGTTCEEEEECSCHH-HHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred CEEEEECCCchHHHHHHHHHHHhc---CcCCCCEEEEEeCCHH-HHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCC
Confidence 799999999985 5556677532 011 557766665432 221111 1111100011357888999999
Q ss_pred EEEEccCC
Q 021114 181 LVLLLISD 188 (317)
Q Consensus 181 vVILavP~ 188 (317)
+||+++|.
T Consensus 80 ~VIiaagv 87 (480)
T 1obb_A 80 FVINTAMV 87 (480)
T ss_dssp EEEECCCT
T ss_pred EEEECCCc
Confidence 99999974
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.015 Score=55.26 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=55.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhh-hhhcCCceEEEEecCCcc---------c-HHHHHHCCceecCCCcCCHHhhcC--c
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSL-AEAKSDIVVKVGLRKGSR---------S-FAEARAAGFTEENGTLGDIYETIS--G 178 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~-~~~~~G~~Vivg~r~~~~---------s-~~~A~~~G~~~~~~~~~~~~e~v~--~ 178 (317)
.+|+|||+|.||..+++.|.+.- +..|.+++++...+++.. . .+.+.+.|... +... +.++++. +
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~-~~~~-d~~e~l~~~~ 82 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRIS-DRAF-SGPEDLMGEA 82 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSC-SSBC-CSGGGGTTSC
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCC-cccC-CHHHHhcCCC
Confidence 47999999999999999998731 111224455433333221 1 12223334221 0012 5667764 5
Q ss_pred CCEEEEccCCchHH-HHHHHHHhcCCCCcEEEEe
Q 021114 179 SDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 179 ADvVILavP~~~~~-~vl~ei~~~lk~gaiVi~~ 211 (317)
.|+|+.++|..... ..++.+...|+.|.-|+..
T Consensus 83 iDvVVe~T~~~~~~~pa~~~~~~aL~aGkhVVta 116 (325)
T 3ing_A 83 ADLLVDCTPASRDGVREYSLYRMAFESGMNVVTA 116 (325)
T ss_dssp CSEEEECCCCCSSSHHHHHHHHHHHHTTCEEEEC
T ss_pred CCEEEECCCCccccchHHHHHHHHHHCCCeEEEc
Confidence 89999999986542 2333344455667776654
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.017 Score=54.39 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=43.6
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC--ceEEEEecCCcccHHHH--HHC-Cc--eecCC-CcCCHHhhcCcCCEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEA--RAA-GF--TEENG-TLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G--~~Vivg~r~~~~s~~~A--~~~-G~--~~~~~-~~~~~~e~v~~ADvV 182 (317)
+||+||| .|.+|.+++..|... | .+|++.+.... ...+ ... .. ..... ...+.+++++++|+|
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~------g~~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvV 80 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMN------PLVSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLI 80 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHC------TTEEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEE
Confidence 7999999 899999999999887 7 56655443322 2222 111 11 10000 012567889999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
|++.+
T Consensus 81 i~~ag 85 (326)
T 1smk_A 81 IVPAG 85 (326)
T ss_dssp EECCC
T ss_pred EEcCC
Confidence 99975
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.021 Score=50.94 Aligned_cols=69 Identities=13% Similarity=0.084 Sum_probs=49.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
|+|.|+|.|.+|..+++.|.+. |++|+...|+.. ........++..-.....+++ ++++|+||.+....
T Consensus 6 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 6 GTLLSFGHGYTARVLSRALAPQ------GWRIIGTSRNPD-QMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAPD 74 (286)
T ss_dssp CEEEEETCCHHHHHHHHHHGGG------TCEEEEEESCGG-GHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCCB
T ss_pred CcEEEECCcHHHHHHHHHHHHC------CCEEEEEEcChh-hhhhHhhCCCeEEEecccccc--cCCCCEEEECCCcc
Confidence 8999999999999999999999 999877666543 333444455432112233443 78999999988654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.033 Score=47.28 Aligned_cols=70 Identities=16% Similarity=0.232 Sum_probs=46.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~e~v~~ADvVILavP~~ 189 (317)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++ .+.. ..++..-.....+ ..+++.++|+||.+....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~-~~~~-~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~ 72 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNR------GHEVTAIVRNAGK-ITQT-HKDINILQKDIFDLTLSDLSDQNVVVDAYGIS 72 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCSHH-HHHH-CSSSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred CeEEEEcCCchhHHHHHHHHHhC------CCEEEEEEcCchh-hhhc-cCCCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence 6899999 599999999999999 9998777776432 2211 1333211011111 116788999999987653
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.046 Score=52.29 Aligned_cols=72 Identities=14% Similarity=0.139 Sum_probs=52.3
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~v 176 (317)
.|+| .+|++||=| +++.|++..+... |+++.+...+. +.-.+ .+.+.|... ....+++|++
T Consensus 152 ~l~g-l~ia~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v--~~~~d~~eav 222 (333)
T 1duv_G 152 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKGV 222 (333)
T ss_dssp CGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHHH
T ss_pred CCCC-cEEEEECCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeE--EEEECHHHHh
Confidence 6788 999999986 9999999999998 99887765431 11222 233677321 0156999999
Q ss_pred CcCCEEEEccC
Q 021114 177 SGSDLVLLLIS 187 (317)
Q Consensus 177 ~~ADvVILavP 187 (317)
+++|+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (333)
T 1duv_G 223 EGADFIYTDVW 233 (333)
T ss_dssp TTCSEEEECCS
T ss_pred CCCCEEEeCCc
Confidence 99999998554
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.048 Score=52.23 Aligned_cols=72 Identities=17% Similarity=0.103 Sum_probs=52.0
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~v 176 (317)
.|+| .+|++||=| +++.|++..+... |+++.+...+. +.-.+ .+.+.|... ....+++|++
T Consensus 152 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v--~~~~d~~eav 222 (335)
T 1dxh_A 152 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL--TLTEDPKEAV 222 (335)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEE--EEESCHHHHT
T ss_pred CcCC-eEEEEecCCccchHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeE--EEEeCHHHHh
Confidence 6888 999999986 9999999999998 99887765432 11222 233566321 0156999999
Q ss_pred CcCCEEEEccC
Q 021114 177 SGSDLVLLLIS 187 (317)
Q Consensus 177 ~~ADvVILavP 187 (317)
+++|+|..-+=
T Consensus 223 ~~aDvvytd~w 233 (335)
T 1dxh_A 223 KGVDFVHTDVW 233 (335)
T ss_dssp TTCSEEEECCC
T ss_pred CCCCEEEeCCc
Confidence 99999998544
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=95.85 E-value=0.065 Score=50.83 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=51.9
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhhc
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~v 176 (317)
..|+| .+|++||= +++..|++..+... |+++.+..... +.-.+ .+.+.|... ....+++|++
T Consensus 151 g~l~g-l~va~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~--~~~~d~~eav 221 (315)
T 1pvv_A 151 GTIKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSF--ELLHDPVKAV 221 (315)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHHT
T ss_pred CCcCC-cEEEEECCCcchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEeCHHHHh
Confidence 45788 99999996 89999999999988 99887765432 11222 223566321 0156999999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-+
T Consensus 222 ~~aDvvy~~~ 231 (315)
T 1pvv_A 222 KDADVIYTDV 231 (315)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcc
Confidence 9999999854
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.033 Score=52.99 Aligned_cols=91 Identities=14% Similarity=0.122 Sum_probs=54.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC--CcccHHHHHHC----C-c-----------eecCC------
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAA----G-F-----------TEENG------ 167 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~~----G-~-----------~~~~~------ 167 (317)
.||||+|+|.||.-+++.|.+. .+++++...+. +........+. | + .. ++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~-----~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v-~g~~i~v~ 77 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNS-----GKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVI-NGNPITIF 77 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----CSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEEEE
T ss_pred eEEEEEccCHHHHHHHHHHHcC-----CCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEE-CCeEEEEE
Confidence 4899999999999999998765 15676544542 33222222221 1 0 00 00
Q ss_pred CcCCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 168 TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 168 ~~~~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
...+++++- .++|+|+.|+|.....+... .+++.|+.+++.
T Consensus 78 ~~~d~~~l~~~~~~vDvV~eatg~~~~~e~a~---~~l~aGak~V~i 121 (335)
T 1u8f_O 78 QERDPSKIKWGDAGAEYVVESTGVFTTMEKAG---AHLQGGAKRVII 121 (335)
T ss_dssp CCSSGGGCCTTTTTCCEEEECSSSCCSHHHHG---GGGGGTCSEEEE
T ss_pred ecCCHHHCccccCCCCEEEECCCchhhHHHHH---HHHhCCCeEEEe
Confidence 012455542 57999999999988766554 345567544433
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=54.86 Aligned_cols=160 Identities=14% Similarity=0.141 Sum_probs=85.8
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH---HHHHH-----CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARA-----AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~---~~A~~-----~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|+|+ |.||..+++.+.+. .|++++...+++.... +.... .++.. ..++++++.++|+|
T Consensus 6 mkV~V~Ga~G~mG~~~~~~~~~~-----~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~----~~dl~~~l~~~DvV 76 (273)
T 1dih_A 6 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 76 (273)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred cEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCchhhhhhhHHHHcCCCcCCcee----cCCHHHHhcCCCEE
Confidence 68999998 99999999987743 1677654444432110 00000 12221 34677888899999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEE-ecCchhhhhhhcccCCCCCccEEEeccCCCChh--hHHHHhhccccc--CC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGL-SHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPS--VRRLYVQGKEIN--GA 257 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~-~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~--~r~lf~~G~e~~--g~ 257 (317)
|-.++|....+++.....+ |.-++. ..|+.....+... ...+... +-..||+.--. +-.+.+.--... ++
T Consensus 77 IDft~p~~~~~~~~~a~~~---G~~vVigTtG~~~e~~~~L~-~~a~~~~-vv~a~N~siGvn~~~~l~~~aa~~~~~~~ 151 (273)
T 1dih_A 77 IDFTRPEGTLNHLAFCRQH---GKGMVIGTTGFDEAGKQAIR-DAAADIA-IVFAANFSVGVNVMLKLLEKAAKVMGDYT 151 (273)
T ss_dssp EECSCHHHHHHHHHHHHHT---TCEEEECCCCCCHHHHHHHH-HHTTTSC-EEECSCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred EEcCChHHHHHHHHHHHhC---CCCEEEECCCCCHHHHHHHH-HhcCCCC-EEEEecCcHHHHHHHHHHHHHHHhcCCCC
Confidence 9777777666666654443 443443 5577543222100 1123344 44567654322 011111100000 12
Q ss_pred CceEEEEecc-----CCCHHHHHHHHHHHHHcCC
Q 021114 258 GINSSFAVHQ-----DVDGRATNVALGWSVALGS 286 (317)
Q Consensus 258 G~~~iitp~~-----d~~~ea~e~a~~l~~alG~ 286 (317)
.+-. +-.|+ .+++.++..++.+.+..|.
T Consensus 152 diei-iE~Hh~~K~DaPSGTA~~~ae~i~~~~~~ 184 (273)
T 1dih_A 152 DIEI-IEAHHRHKVDAPSGTALAMGEAIAHALDK 184 (273)
T ss_dssp EEEE-EEEECTTCCSSSCHHHHHHHHHHHHHTTC
T ss_pred CEEE-EEeecCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 1222 33333 3678899999999988884
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.051 Score=51.80 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=52.3
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHH----HHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~----~A~~~G~~~~~~~~~~~~e~ 175 (317)
..|+| .+|++||=| ++..|++..+... |+++.+...+. +.-.+ .|.+.|... ....+++|+
T Consensus 163 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v--~~~~d~~ea 233 (325)
T 1vlv_A 163 GRLKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSV--SFTSNLEEA 233 (325)
T ss_dssp SCSTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE--EEESCHHHH
T ss_pred CCcCC-cEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 45788 999999985 9999999999998 99887765432 11222 233566321 015699999
Q ss_pred cCcCCEEEEccC
Q 021114 176 ISGSDLVLLLIS 187 (317)
Q Consensus 176 v~~ADvVILavP 187 (317)
++++|+|..-+=
T Consensus 234 v~~aDvvyt~~w 245 (325)
T 1vlv_A 234 LAGADVVYTDVW 245 (325)
T ss_dssp HTTCSEEEECCC
T ss_pred HccCCEEEeccc
Confidence 999999998543
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.072 Score=50.17 Aligned_cols=93 Identities=19% Similarity=0.224 Sum_probs=63.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~ 262 (373)
T 1p0f_A 191 PG-STCAVFGLGGVGFSAIVGCKAA------GASRII-GVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 262 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCC
Confidence 47 8999999999999999999998 98 554 45555566788888886320 1000 13333332 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+||-++... +.+++.+..++++ -.++..+
T Consensus 263 Dvvid~~g~~---~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 263 DYAVECAGRI---ETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred CEEEECCCCH---HHHHHHHHHHhcCCCEEEEEc
Confidence 9999998752 3456667778887 6655443
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.025 Score=55.59 Aligned_cols=69 Identities=22% Similarity=0.208 Sum_probs=49.3
Q ss_pred cCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+..+++|.|||+|-.|.+ +|+.|++. |++|.+.+....+..+...+.|+....+ .+. +.++++|+||+.
T Consensus 15 ~~~~~~i~viG~G~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 15 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIYIG--HAE-EHIEGASVVVVS 84 (475)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEEES--CCG-GGGTTCSEEEEC
T ss_pred cccCCEEEEEeecHHHHHHHHHHHHhC------CCEEEEECCCCCHHHHHHHhCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 445589999999999997 99999999 9998766655444334455678754211 123 456789999985
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.022 Score=46.71 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=67.5
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||. +..|..+.++|++. |++|+-.+.+... . .|... +.++.|+=. .|++++++|
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~------g~~V~pVnP~~~~-i-----~G~~~----y~sl~dlp~-vDlavi~~p 67 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSH------GHEFIPVGRKKGE-V-----LGKTI----INERPVIEG-VDTVTLYIN 67 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHH------TCCEEEESSSCSE-E-----TTEEC----BCSCCCCTT-CCEEEECSC
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHC------CCeEEEECCCCCc-C-----CCeec----cCChHHCCC-CCEEEEEeC
Confidence 78999997 56899999999999 9876544433221 1 45543 456666555 899999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEE
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV 233 (317)
+....+++++....- ... |++..|+.-..+.+ ..-..+++++
T Consensus 68 ~~~v~~~v~e~~~~g-~k~-v~~~~G~~~~e~~~--~a~~~Girvv 109 (122)
T 3ff4_A 68 PQNQLSEYNYILSLK-PKR-VIFNPGTENEELEE--ILSENGIEPV 109 (122)
T ss_dssp HHHHGGGHHHHHHHC-CSE-EEECTTCCCHHHHH--HHHHTTCEEE
T ss_pred HHHHHHHHHHHHhcC-CCE-EEECCCCChHHHHH--HHHHcCCeEE
Confidence 999999999876542 233 56788874222221 0112367777
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.022 Score=54.34 Aligned_cols=91 Identities=11% Similarity=0.121 Sum_probs=55.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEe--cC-CcccHHHHHHCCce--------ecCCCc--CCHHhhcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL--RK-GSRSFAEARAAGFT--------EENGTL--GDIYETIS 177 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~--r~-~~~s~~~A~~~G~~--------~~~~~~--~~~~e~v~ 177 (317)
+||||+| .|.+|..+.+.|.+. ..++++... ++ ..+.. ....+.. ..+... .+.++ +.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~-----p~~elvai~~s~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~ 76 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKH-----PYLELVKVSASPSKIGKKY--KDAVKWIEQGDIPEEVQDLPIVSTNYED-HK 76 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECCGGGTTSBH--HHHCCCCSSSSCCHHHHTCBEECSSGGG-GT
T ss_pred cEEEEECcCCHHHHHHHHHHHhC-----CCcEEEEEecChhhcCCCH--HHhcCcccccccccCCceeEEeeCCHHH-hc
Confidence 6899999 899999999998765 134554443 21 11222 1111110 000001 13344 47
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++|+|++|+|.....++..... +.|+.|+|.++
T Consensus 77 ~vDvVf~atp~~~s~~~a~~~~---~aG~~VId~s~ 109 (350)
T 2ep5_A 77 DVDVVLSALPNELAESIELELV---KNGKIVVSNAS 109 (350)
T ss_dssp TCSEEEECCCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCCEEEECCChHHHHHHHHHHH---HCCCEEEECCc
Confidence 8999999999887777666554 35777888775
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.038 Score=50.41 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=79.0
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCCc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVILavP~~ 189 (317)
+||+|+|+ |.||..+++.+.+. .+++++...+++ .++++++. ++|+||=.+++.
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~-----~~~elva~~d~~-------------------~dl~~~~~~~~DvvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAA-----DDLTLSAELDAG-------------------DPLSLLTDGNTEVVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHC-----TTCEEEEEECTT-------------------CCTHHHHHTTCCEEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEccC-------------------CCHHHHhccCCcEEEEccChH
Confidence 48999996 99999999998753 167776555542 13444443 789999888888
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecCchhhhhhhcccCCC--CCccEEEeccCCCChh--hHHHHhhcccccCCCceEEEE
Q 021114 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSIGLDFP--KNIGVIAVCPKGMGPS--VRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~ga-iVi~~~Gv~l~~~~~~~~~l~--~~i~vV~vhPn~pg~~--~r~lf~~G~e~~g~G~~~iit 264 (317)
...+++.....+ |. +|+-+.|+.....+....... +++.+ -..||+.--. +..+.+.--... ..+ -|+-
T Consensus 57 a~~~~~~~a~~~---g~~~VigTTG~~~e~~~~l~~aa~~~~~~~v-v~a~N~siGv~ll~~l~~~aa~~~-~di-eIiE 130 (245)
T 1p9l_A 57 VVMGNLEFLIDN---GIHAVVGTTGFTAERFQQVESWLVAKPNTSV-LIAPNFAIGAVLSMHFAKQAARFF-DSA-EVIE 130 (245)
T ss_dssp THHHHHHHHHHT---TCEEEECCCCCCHHHHHHHHHHHHTSTTCEE-EECSCCCHHHHHHHHHHHHHGGGC-SEE-EEEE
T ss_pred HHHHHHHHHHHc---CCCEEEcCCCCCHHHHHHHHHHHHhCCCCCE-EEECCccHHHHHHHHHHHHHHhhc-CCE-EEEE
Confidence 777766654433 33 444455764432211000111 13333 4466653221 111222110011 111 2233
Q ss_pred ecc----C-CCHHHHHHHHHHHHHcC
Q 021114 265 VHQ----D-VDGRATNVALGWSVALG 285 (317)
Q Consensus 265 p~~----d-~~~ea~e~a~~l~~alG 285 (317)
.|. | +++.++.+++.+.+..+
T Consensus 131 ~HH~~K~DaPSGTA~~lae~i~~~~~ 156 (245)
T 1p9l_A 131 LHHPHKADAPSGTAARTAKLIAEARK 156 (245)
T ss_dssp EECTTCCSSSCHHHHHHHHHHHHHTT
T ss_pred CcccCCCCCCCHHHHHHHHHHHHhhc
Confidence 343 3 47889999998887765
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.073 Score=50.18 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=62.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 195 PG-STCAVFGLGCVGLSAIIGCKIA------GASRII-AIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCc
Confidence 57 8999999999999999999998 98 554 45545566778888886421 1010 13333332 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+||-++... +.+++.+..++++ -.++..+
T Consensus 267 Dvvid~~G~~---~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 267 DYSLDCAGTA---QTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp SEEEESSCCH---HHHHHHHHTBCTTTCEEEECC
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCCEEEEEC
Confidence 9999998753 3456667778876 6555443
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.076 Score=50.98 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCC--ceecCCCcCCHHh
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~~~~~~~~~e 174 (317)
..|+| .||+|||= +++..|++..+... |+++.+...+. +.-.+. |.+.| +.. ..+++|
T Consensus 175 G~l~g-lkva~vGD~~nva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~----~~d~~e 243 (340)
T 4ep1_A 175 NTFKG-IKLAYVGDGNNVCHSLLLASAKV------GMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEI----LHNPEL 243 (340)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEE----ESCHHH
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEE----ECCHHH
Confidence 34889 99999994 67899999999888 99887664432 222222 23556 332 569999
Q ss_pred hcCcCCEEEEcc
Q 021114 175 TISGSDLVLLLI 186 (317)
Q Consensus 175 ~v~~ADvVILav 186 (317)
+++++|+|..-+
T Consensus 244 av~~aDVvyt~~ 255 (340)
T 4ep1_A 244 AVNEADFIYTDV 255 (340)
T ss_dssp HHTTCSEEEECC
T ss_pred HhCCCCEEEecC
Confidence 999999999865
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.065 Score=49.60 Aligned_cols=95 Identities=17% Similarity=0.115 Sum_probs=65.6
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
-+| .+|.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|.... +....+..+.+ ...|
T Consensus 159 ~~g-~~VlV~GaG~vG~~aiq~ak~~------G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d 231 (346)
T 4a2c_A 159 CEN-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQ 231 (346)
T ss_dssp CTT-SEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSE
T ss_pred CCC-CEEEEECCCCcchHHHHHHHHc------CCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcc
Confidence 467 9999999999999999999998 98776676666667788999996421 11112333332 3468
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++... ..++..+..++++..++..+
T Consensus 232 ~v~d~~G~~---~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 232 LILETAGVP---QTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp EEEECSCSH---HHHHHHHHHCCTTCEEEECC
T ss_pred ccccccccc---chhhhhhheecCCeEEEEEe
Confidence 888887643 24455566677777766554
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=56.46 Aligned_cols=89 Identities=16% Similarity=0.152 Sum_probs=55.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-----c-eEEEEecCC-c-ccHHHH----HH-CCceecCCCcCCHHhhcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-----I-VVKVGLRKG-S-RSFAEA----RA-AGFTEENGTLGDIYETIS 177 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-----~-~Vivg~r~~-~-~s~~~A----~~-~G~~~~~~~~~~~~e~v~ 177 (317)
+||+|+| .|.+|..+.+.|.+. + . +++...++. . +..... .. ...... ..+. +.+.
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~------~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~---~~~~-~~~~ 79 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGH------PAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE---PTEA-AVLG 79 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------HHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE---ECCH-HHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHcC------CCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec---cCCH-HHhc
Confidence 6999999 999999999999876 5 3 444433321 1 111100 00 011110 1233 3456
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++|+||+|+|.....++.+.+ +.|..++|.++.
T Consensus 80 ~~DvVf~alg~~~s~~~~~~~----~~G~~vIDlSa~ 112 (352)
T 2nqt_A 80 GHDAVFLALPHGHSAVLAQQL----SPETLIIDCGAD 112 (352)
T ss_dssp TCSEEEECCTTSCCHHHHHHS----CTTSEEEECSST
T ss_pred CCCEEEECCCCcchHHHHHHH----hCCCEEEEECCC
Confidence 899999999988766666544 568889987764
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.63 E-value=0.081 Score=49.81 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=63.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 192 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 192 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRII-AVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 554 45545566778888886320 1110 13444332 48
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+||-++... +.+++.+..++++ -.++..+
T Consensus 264 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 264 DFSLECVGNV---GVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCCH---HHHHHHHHHhhcCCcEEEEEc
Confidence 9999998753 3456666778876 5555443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.58 E-value=0.079 Score=49.90 Aligned_cols=93 Identities=23% Similarity=0.338 Sum_probs=62.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 191 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~ 262 (374)
T 2jhf_A 191 QG-STCAVFGLGGVGLSVIMGCKAA------GAARII-GVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGV 262 (374)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCC
Confidence 57 8999999999999999999998 98 554 45445566778888886320 1110 13333332 48
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+||-++... +.+++.+..++++ -.++..+
T Consensus 263 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 263 DFSFEVIGRL---DTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp SEEEECSCCH---HHHHHHHHHBCTTTCEEEECS
T ss_pred cEEEECCCCH---HHHHHHHHHhhcCCcEEEEec
Confidence 9999998753 2455566677777 6655443
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.05 Score=53.84 Aligned_cols=75 Identities=20% Similarity=0.124 Sum_probs=44.6
Q ss_pred CEEEEEeccch-HHHHHHHHHh--hhhhhcC-CceEEEEecCCc-ccHHH----HH----HCCceecCCCcCCHHhhcCc
Q 021114 112 NQIGVIGWGSQ-GPAQAQNLRD--SLAEAKS-DIVVKVGLRKGS-RSFAE----AR----AAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 112 kkIGIIG~G~m-G~AiA~~Lr~--~~~~~~~-G~~Vivg~r~~~-~s~~~----A~----~~G~~~~~~~~~~~~e~v~~ 178 (317)
+||+|||.|+. |.+++..|.. . ++ +.+|+++++... +..+. +. ..+....-....|..+++++
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~~~----~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~g 83 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKRYH----ELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 83 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTT----TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCC----CCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCC
Confidence 69999999998 7787766665 3 11 235655555430 21111 11 12211100113578899999
Q ss_pred CCEEEEccCCch
Q 021114 179 SDLVLLLISDAA 190 (317)
Q Consensus 179 ADvVILavP~~~ 190 (317)
||+||++++...
T Consensus 84 AD~VVitagv~~ 95 (450)
T 1s6y_A 84 ADFVTTQFRVGG 95 (450)
T ss_dssp CSEEEECCCTTH
T ss_pred CCEEEEcCCCCC
Confidence 999999999643
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.013 Score=54.91 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=41.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v~~ADvV 182 (317)
|||+|||.|.+|.++|..|... +. ++.+.+.......-.|.+. +... .-...+..+.+++||+|
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~-~i~~~~d~~~~~~aDvV 73 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYP-KIVGGADYSLLKGSEII 73 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCC-EEEEESCGGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEeCCCCcchhhhhhhhcccccCCCCC-eEecCCCHHHhCCCCEE
Confidence 6899999999999999999887 65 4544443322222222211 1100 00012234678999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
|++.
T Consensus 74 vitA 77 (294)
T 2x0j_A 74 VVTA 77 (294)
T ss_dssp EECC
T ss_pred EEec
Confidence 9976
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.09 Score=50.28 Aligned_cols=97 Identities=18% Similarity=0.162 Sum_probs=63.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |. +| ++.+.+++..+.+++.|.... +....+..+.+ ...|
T Consensus 213 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~V-i~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 213 PG-DNVVILGGGPIGLAAVAILKHA------GASKV-ILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEE-EEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEE-EEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 57 8999999999999999999998 98 55 455555666778888886321 11112333333 2599
Q ss_pred EEEEccCCch-HHH-HHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAA-QAD-NYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~-~~~-vl~ei~~~lk~gaiVi~~~G 213 (317)
+||-++.... ..+ .++-+...++++-.++.++.
T Consensus 285 ~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred EEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 9999998762 222 22233244477777766543
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.032 Score=55.37 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=51.4
Q ss_pred CCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc--cC
Q 021114 111 INQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL--IS 187 (317)
Q Consensus 111 ikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa--vP 187 (317)
+++|.|||.|-.|.+ +|+.|++. |++|.+.+.+..+..+..++.|+... .....+.+.++|+||+. +|
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~Spgi~ 92 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNSVTQHLTALGAQIY---FHHRPENVLDASVVVVSTAIS 92 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEE---SSCCGGGGTTCSEEEECTTSC
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhC------CCeEEEEECCCCHHHHHHHHCCCEEE---CCCCHHHcCCCCEEEECCCCC
Confidence 389999999999996 89999999 99987766655444555667787642 22233457789999985 55
Q ss_pred C
Q 021114 188 D 188 (317)
Q Consensus 188 ~ 188 (317)
+
T Consensus 93 ~ 93 (494)
T 4hv4_A 93 A 93 (494)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.098 Score=49.82 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=50.3
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHh
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~~~~~~~e 174 (317)
..|+| .||++|| .+++..|++..+... |+++.+..... +...+.+ .+.| +.. ..|++|
T Consensus 153 g~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~----~~d~~e 221 (323)
T 3gd5_A 153 GRLAG-LKLAYVGDGNNVAHSLLLGCAKV------GMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQI----LRDPFE 221 (323)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEE----ECCHHH
Confidence 35789 9999999 568999999999888 99887664332 2222222 2345 332 569999
Q ss_pred hcCcCCEEEEcc
Q 021114 175 TISGSDLVLLLI 186 (317)
Q Consensus 175 ~v~~ADvVILav 186 (317)
+++++|+|..-+
T Consensus 222 av~~aDvvyt~~ 233 (323)
T 3gd5_A 222 AARGAHILYTDV 233 (323)
T ss_dssp HHTTCSEEEECC
T ss_pred HhcCCCEEEEec
Confidence 999999998865
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0059 Score=53.60 Aligned_cols=94 Identities=12% Similarity=0.164 Sum_probs=55.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILav 186 (317)
|+|.|.| .|-+|.++++.|.+. | ++|++..|+.++. +.....++..-.....+ ++++++++|+||.+.
T Consensus 24 k~vlVtGatG~iG~~l~~~L~~~------G~~~V~~~~R~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a 96 (236)
T 3qvo_A 24 KNVLILGAGGQIARHVINQLADK------QTIKQTLFARQPAKI-HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANL 96 (236)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------TTEEEEEEESSGGGS-CSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEEC
T ss_pred cEEEEEeCCcHHHHHHHHHHHhC------CCceEEEEEcChhhh-cccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcC
Confidence 8899999 799999999999998 9 8887776653321 11111122110111233 456788999999877
Q ss_pred CCchHHHHHHHHHhcC---CCCcEEEEec
Q 021114 187 SDAAQADNYEKIFSCM---KPNSILGLSH 212 (317)
Q Consensus 187 P~~~~~~vl~ei~~~l---k~gaiVi~~~ 212 (317)
.........+.+++.| +.+.+|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~iV~iSS 125 (236)
T 3qvo_A 97 TGEDLDIQANSVIAAMKACDVKRLIFVLS 125 (236)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCchhHHHHHHHHHHHHcCCCEEEEEec
Confidence 6644332233344333 2234554443
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.085 Score=49.56 Aligned_cols=93 Identities=20% Similarity=0.224 Sum_probs=62.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +... .+..+.+. ..
T Consensus 190 ~g-~~VlV~GaG~vG~~avqla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~ 261 (373)
T 2fzw_A 190 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRII-GVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGV 261 (373)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCC
Confidence 47 8999999999999999999998 98 554 45445566778888886320 1000 13333332 58
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+||-++... +.+++....++++ -.++..+
T Consensus 262 D~vid~~g~~---~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 262 DYSFECIGNV---KVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCcH---HHHHHHHHhhccCCcEEEEEe
Confidence 9999998753 3456667778887 6655443
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.025 Score=53.62 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=48.5
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCC--ceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAG--FTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ 178 (317)
..|+| .||++|| .+++..|++..+... |+++.+..... +... +++.| +.. ..+++|++++
T Consensus 150 g~l~g-lkva~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~--~~~~g~~v~~----~~d~~eav~~ 216 (309)
T 4f2g_A 150 GPIRG-KTVAWVGDANNMLYTWIQAARIL------DFKLQLSTPPGYALDAKLV--DAESAPFYQV----FDDPNEACKG 216 (309)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCGGGCCCGGGS--CGGGGGGEEE----CSSHHHHTTT
T ss_pred CCCCC-CEEEEECCCcchHHHHHHHHHHc------CCEEEEECCcccCCCHHHH--HHHcCCeEEE----EcCHHHHhcC
Confidence 45889 9999999 568999999999888 99877664321 1111 11223 332 5699999999
Q ss_pred CCEEEEcc
Q 021114 179 SDLVLLLI 186 (317)
Q Consensus 179 ADvVILav 186 (317)
+|+|..-+
T Consensus 217 aDvvyt~~ 224 (309)
T 4f2g_A 217 ADLVTTDV 224 (309)
T ss_dssp CSEEEECC
T ss_pred CCEEEecc
Confidence 99999854
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.016 Score=53.00 Aligned_cols=73 Identities=22% Similarity=0.185 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CC--ceecCCCcCC---HHhhc
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AG--FTEENGTLGD---IYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G--~~~~~~~~~~---~~e~v 176 (317)
.++| +++.|+| .|-+|.+++..|.+. |.+|++..|+.++..+.+.+ .+ +...| ..+ .++++
T Consensus 116 ~l~g-k~vlVtGaaGGiG~aia~~L~~~------G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D--~~~~~~~~~~~ 186 (287)
T 1lu9_A 116 SVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAE--TADDASRAEAV 186 (287)
T ss_dssp CCTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEE--CCSHHHHHHHT
T ss_pred CCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEECCHHHHHHHHHHHHhcCCcEEEEec--CCCHHHHHHHH
Confidence 4789 9999999 999999999999999 99887777764332222221 12 11101 222 45678
Q ss_pred CcCCEEEEccCC
Q 021114 177 SGSDLVLLLISD 188 (317)
Q Consensus 177 ~~ADvVILavP~ 188 (317)
++.|+||.+++.
T Consensus 187 ~~~DvlVn~ag~ 198 (287)
T 1lu9_A 187 KGAHFVFTAGAI 198 (287)
T ss_dssp TTCSEEEECCCT
T ss_pred HhCCEEEECCCc
Confidence 889999999974
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.065 Score=50.64 Aligned_cols=93 Identities=20% Similarity=0.320 Sum_probs=63.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCC--cCCHHhhcC-----cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT--LGDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~--~~~~~e~v~-----~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +.. ..+..+.++ ..
T Consensus 193 ~g-~~VlV~GaG~vG~~a~q~a~~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~ 264 (378)
T 3uko_A 193 PG-SNVAIFGLGTVGLAVAEGAKTA------GASRII-GIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGV 264 (378)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHH------TCSCEE-EECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEE-EEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCC
Confidence 47 8999999999999999999998 98 554 45544566788888886421 100 123333332 48
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCC-cEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~g-aiVi~~~ 212 (317)
|+|+-++... +.+++.+..++++ -.++.++
T Consensus 265 D~vid~~g~~---~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 265 DYSFECIGNV---SVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp SEEEECSCCH---HHHHHHHHTBCTTTCEEEECS
T ss_pred CEEEECCCCH---HHHHHHHHHhhccCCEEEEEc
Confidence 9999998863 3456666778875 5555444
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.031 Score=48.15 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=46.7
Q ss_pred CEEEEEe-ccchHHHHHHHHH-hhhhhhcCCceEEEEecCCc-ccHHHH-HHCCceecCCCcC---CHHhhcCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGS-RSFAEA-RAAGFTEENGTLG---DIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r~~~-~s~~~A-~~~G~~~~~~~~~---~~~e~v~~ADvVIL 184 (317)
++|.|+| .|.+|.++++.|. +. |++|++..|+.+ +..+.+ ...++..-..... +++++++++|+||.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~ 79 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYT------DMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFV 79 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHC------CCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcC------CceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence 5699999 6999999999999 78 999877766533 211111 1122211011123 34567889999999
Q ss_pred ccCCc
Q 021114 185 LISDA 189 (317)
Q Consensus 185 avP~~ 189 (317)
+....
T Consensus 80 ~ag~~ 84 (221)
T 3r6d_A 80 GAMES 84 (221)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 88764
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.067 Score=50.61 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=50.6
Q ss_pred cccC-CCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHH----HCCceecCCCcCCHHhh
Q 021114 106 DAFN-GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEAR----AAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~-GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~----~~G~~~~~~~~~~~~e~ 175 (317)
..|+ | .+|++|| .+++..|++..+... |+++.+...+. +...+.+. +.|... ....+++|+
T Consensus 141 g~l~~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~--~~~~d~~ea 211 (307)
T 3tpf_A 141 KMQNGI-AKVAFIGDSNNMCNSWLITAAIL------GFEISIAMPKNYKISPEIWEFAMKQALISGAKI--SLGYDKFEA 211 (307)
T ss_dssp CCGGGC-CEEEEESCSSHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEESCHHHH
T ss_pred CCCCCC-CEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeE--EEEcCHHHH
Confidence 3577 9 9999999 467899999999888 99877664432 12222222 444321 015699999
Q ss_pred cCcCCEEEEcc
Q 021114 176 ISGSDLVLLLI 186 (317)
Q Consensus 176 v~~ADvVILav 186 (317)
++++|+|..-+
T Consensus 212 v~~aDvvyt~~ 222 (307)
T 3tpf_A 212 LKDKDVVITDT 222 (307)
T ss_dssp HTTCSEEEECC
T ss_pred hcCCCEEEecC
Confidence 99999999876
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.037 Score=52.41 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=53.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC--ceEEEEecCCc-ccHH--------HHH-HCCceecCCCcC---CHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD--IVVKVGLRKGS-RSFA--------EAR-AAGFTEENGTLG---DIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G--~~Vivg~r~~~-~s~~--------~A~-~~G~~~~~~~~~---~~~e~v 176 (317)
.+|||||+|.||..+++.|++.-+....| ++++...+++. +..+ ... ..++.. ... |.++++
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~ll 83 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDS---LEYESISASEAL 83 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGG---CCSEECCHHHHH
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCccc---ccCCCCCHHHHh
Confidence 57999999999999999997751111112 45433333322 1111 111 112210 123 788877
Q ss_pred -CcCCEEEEccCCc----hHHHHHHHHHhcCCCCcEEEEe
Q 021114 177 -SGSDLVLLLISDA----AQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 177 -~~ADvVILavP~~----~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
.+.|+|+.++|.. .+.+++.+ .|+.|+.|+.+
T Consensus 84 ~~~iDvVv~~t~~~~~~~~~~~~~~~---AL~aGkhVvta 120 (331)
T 3c8m_A 84 ARDFDIVVDATPASADGKKELAFYKE---TFENGKDVVTA 120 (331)
T ss_dssp HSSCSEEEECSCCCSSSHHHHHHHHH---HHHTTCEEEEC
T ss_pred CCCCCEEEECCCCCCccchHHHHHHH---HHHCCCeEEec
Confidence 4689999999986 33344443 34457766643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.043 Score=51.99 Aligned_cols=94 Identities=19% Similarity=0.224 Sum_probs=64.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC--------cC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS--------GS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~--------~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+. ..
T Consensus 182 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 182 AG-STVAILGGGVIGLLTVQLARLA------GATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCC
Confidence 57 8999999999999999999998 98334455555666778888886421 112234444443 37
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+|+-++... +.+++....++++-.++.++
T Consensus 255 Dvvid~~G~~---~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 255 DVVIECAGVA---ETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp EEEEECSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred CEEEECCCCH---HHHHHHHHHhccCCEEEEEe
Confidence 9999988743 34555566677777766554
|
| >1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.013 Score=56.36 Aligned_cols=88 Identities=14% Similarity=0.059 Sum_probs=49.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHhhcCc------------
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISG------------ 178 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e~v~~------------ 178 (317)
.+|||||+|.||..+++.|++.- .+.+++++...++.... .+.+. |+.. ..+.++++++
T Consensus 5 i~vgIiG~G~VG~~~~~~l~~~~--~g~~~~vvaV~d~~~~~--~~~~~~gi~~----~~~~~e~l~~~~~~~~did~v~ 76 (358)
T 1ebf_A 5 VNVAVIGAGVVGSAFLDQLLAMK--STITYNLVLLAEAERSL--ISKDFSPLNV----GSDWKAALAASTTKTLPLDDLI 76 (358)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCC--CSSEEEEEEEECSSBEE--ECSSCSCCSC----TTCHHHHHHTCCCBCCCHHHHH
T ss_pred EEEEEEecCHHHHHHHHHHHhcC--CCCCEEEEEEEECChhh--hccccCCCCc----cccHHHHHhcccCCCCCHHHHH
Confidence 57999999999999999998750 01124443333322211 01111 3221 1233443332
Q ss_pred --------CCEEEEccCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 179 --------SDLVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 179 --------ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
.|+|+.|+|...+.+.+. ..|+.|+.|+.
T Consensus 77 e~~~~~~~~DvVV~~t~~~~~a~~~~---~AL~aGkhVVt 113 (358)
T 1ebf_A 77 AHLKTSPKPVILVDNTSSAYIAGFYT---KFVENGISIAT 113 (358)
T ss_dssp HHHTTCSSCEEEEECSCCHHHHTTHH---HHHHTTCEEEC
T ss_pred HHhhhccCCcEEEEcCCChHHHHHHH---HHHHCCCeEEe
Confidence 389999999876554442 34566777665
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.28 E-value=0.063 Score=53.51 Aligned_cols=76 Identities=20% Similarity=0.084 Sum_probs=43.2
Q ss_pred CEEEEEeccch-HHHHHHHHHhhhhhhcC-CceEEEEecCCcccHHH----HH----HCCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQ-GPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAE----AR----AAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~m-G~AiA~~Lr~~~~~~~~-G~~Vivg~r~~~~s~~~----A~----~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|.. |.++|..|.... .+. +.+|+++++..+ ..+. .. ..+....-....|.++++++||+
T Consensus 29 ~KIaVIGaGsv~~~ala~~L~~~~--~~l~~~eV~L~Di~~e-~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~ 105 (472)
T 1u8x_X 29 FSIVIAGGGSTFTPGIVLMLLDHL--EEFPIRKLKLYDNDKE-RQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDF 105 (472)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTT--TTSCEEEEEEECSCHH-HHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHhCC--CCCCCCEEEEEeCCHH-HHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCE
Confidence 69999999998 555665554430 012 335665555432 1111 01 11111000013588899999999
Q ss_pred EEEccCCch
Q 021114 182 VLLLISDAA 190 (317)
Q Consensus 182 VILavP~~~ 190 (317)
||+++|...
T Consensus 106 VViaag~~~ 114 (472)
T 1u8x_X 106 VMAHIRVGK 114 (472)
T ss_dssp EEECCCTTH
T ss_pred EEEcCCCcc
Confidence 999999843
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.079 Score=51.23 Aligned_cols=71 Identities=15% Similarity=0.168 Sum_probs=52.4
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCC--ceecCCCcCCHH
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~~~~~~~~~ 173 (317)
..|+| .+|++||=| ++..|++..+... |+++.+..... +...+. +.+.| +.. ..+++
T Consensus 172 g~l~g-l~va~vGD~~~rva~Sl~~~~~~l------G~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~----~~d~~ 240 (359)
T 2w37_A 172 GKLQG-LTLTFMGDGRNNVANSLLVTGAIL------GVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVI----TDDLD 240 (359)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHH------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCccchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EeCHH
Confidence 46889 999999986 9999999999998 99887765431 112222 23556 332 56999
Q ss_pred hhcCcCCEEEEccC
Q 021114 174 ETISGSDLVLLLIS 187 (317)
Q Consensus 174 e~v~~ADvVILavP 187 (317)
|++++||+|..-+=
T Consensus 241 eav~~aDvvytd~w 254 (359)
T 2w37_A 241 EGLKGSNVVYTDVW 254 (359)
T ss_dssp HHHTTCSEEEECCS
T ss_pred HHhcCCCEEEEccc
Confidence 99999999998553
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.017 Score=55.06 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=52.7
Q ss_pred CEEEEEeccchHHHHHHHHHhh---hhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS---LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~---~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
.+|||||+|.||..+++.|++. +.+.|.+++++...+++.. .+ .++.. .....|.++++ +.|+|+.++|.
T Consensus 4 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~---~~--~~~~~-~~~~~d~~~ll-~iDvVve~t~~ 76 (332)
T 2ejw_A 4 LKIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPR---KP--RAIPQ-ELLRAEPFDLL-EADLVVEAMGG 76 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTT---SC--CSSCG-GGEESSCCCCT-TCSEEEECCCC
T ss_pred eEEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHH---Hh--hccCc-ccccCCHHHHh-CCCEEEECCCC
Confidence 5799999999999999999775 1112223454433333221 11 12210 01135778888 99999999997
Q ss_pred chH-HHHHHHHHhcCCCCcEEEE
Q 021114 189 AAQ-ADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 189 ~~~-~~vl~ei~~~lk~gaiVi~ 210 (317)
... .+...+. |+.|+-|+.
T Consensus 77 ~~~a~~~~~~A---L~aGKhVVt 96 (332)
T 2ejw_A 77 VEAPLRLVLPA---LEAGIPLIT 96 (332)
T ss_dssp SHHHHHHHHHH---HHTTCCEEE
T ss_pred cHHHHHHHHHH---HHcCCeEEE
Confidence 743 3344433 344555554
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.055 Score=50.34 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=40.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecC-CcccHHH-HHH--------CCceecCCCcCCHHhhcCc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK-GSRSFAE-ARA--------AGFTEENGTLGDIYETISG 178 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~-~~~s~~~-A~~--------~G~~~~~~~~~~~~e~v~~ 178 (317)
+||+||| .|.+|.+++..|... |+ ++.+.+.+ +.+..+. +.+ ..... ...+ .+++++
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~------~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v---~~~~-~~a~~~ 70 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRV---RQGG-YEDTAG 70 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEE---EECC-GGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEE---EeCC-HHHhCC
Confidence 5899999 999999999999877 65 45444431 2211110 111 01111 0123 678999
Q ss_pred CCEEEEccC
Q 021114 179 SDLVLLLIS 187 (317)
Q Consensus 179 ADvVILavP 187 (317)
||+||++..
T Consensus 71 aDvVi~~ag 79 (303)
T 1o6z_A 71 SDVVVITAG 79 (303)
T ss_dssp CSEEEECCC
T ss_pred CCEEEEcCC
Confidence 999999875
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.02 Score=54.78 Aligned_cols=70 Identities=16% Similarity=0.117 Sum_probs=44.2
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccH-HHHH--HCC-ceecC-CCcCCHHhhcCcCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSF-AEAR--AAG-FTEEN-GTLGDIYETISGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~-~~A~--~~G-~~~~~-~~~~~~~e~v~~AD 180 (317)
.+ +||+|||. |.+|.++|..+... |. ++++.+ .+.+.. ..+. ..+ +...+ ....+..+++++||
T Consensus 7 ~~-~KV~ViGaaG~VG~~~a~~l~~~------g~~~evvLiD-i~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dAD 78 (343)
T 3fi9_A 7 TE-EKLTIVGAAGMIGSNMAQTAAMM------RLTPNLCLYD-PFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAK 78 (343)
T ss_dssp CS-SEEEEETTTSHHHHHHHHHHHHT------TCCSCEEEEC-SCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEE
T ss_pred CC-CEEEEECCCChHHHHHHHHHHhc------CCCCEEEEEe-CCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCC
Confidence 45 89999998 99999999988887 74 565444 333211 1111 111 11000 01257788899999
Q ss_pred EEEEcc
Q 021114 181 LVLLLI 186 (317)
Q Consensus 181 vVILav 186 (317)
+||++.
T Consensus 79 vVvita 84 (343)
T 3fi9_A 79 YIVSSG 84 (343)
T ss_dssp EEEECC
T ss_pred EEEEcc
Confidence 999985
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.041 Score=51.39 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=65.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .+|.|+|.|.+|...++.++.. |.+|+... .+++..+.+++.|.... ..+.+++.+..|+|+-++..
T Consensus 176 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~~-~~~~~~~~~~~lGa~~v---~~~~~~~~~~~D~vid~~g~ 244 (348)
T 3two_A 176 KG-TKVGVAGFGGLGSMAVKYAVAM------GAEVSVFA-RNEHKKQDALSMGVKHF---YTDPKQCKEELDFIISTIPT 244 (348)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHT------TCEEEEEC-SSSTTHHHHHHTTCSEE---ESSGGGCCSCEEEEEECCCS
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEe-CCHHHHHHHHhcCCCee---cCCHHHHhcCCCEEEECCCc
Confidence 57 9999999999999999999998 99865544 44556778888887531 23444444579999999886
Q ss_pred chHHHHHHHHHhcCCCCcEEEEec
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.. .+++....++++-.++..+
T Consensus 245 ~~---~~~~~~~~l~~~G~iv~~G 265 (348)
T 3two_A 245 HY---DLKDYLKLLTYNGDLALVG 265 (348)
T ss_dssp CC---CHHHHHTTEEEEEEEEECC
T ss_pred HH---HHHHHHHHHhcCCEEEEEC
Confidence 53 3455566777777776554
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.049 Score=51.24 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=43.6
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCC----cccHH-HH--HHCC---ceecCCCcCCHH
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG----SRSFA-EA--RAAG---FTEENGTLGDIY 173 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~----~~s~~-~A--~~~G---~~~~~~~~~~~~ 173 (317)
+||+|||. |.+|.+++..|... |+ ++.+ .|.+ ++..+ .+ ...+ +...-....+..
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~------~~~~~~~~~ev~l-~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~ 78 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANG------DMLGKDQPVILQL-LEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPM 78 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEE-ECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHH
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCcCCCCCCEEEE-EcCCCccccccchhhHHHHhhhcccccCcEEEecCcH
Confidence 79999997 99999999999887 64 5554 4443 21111 11 1121 110000125778
Q ss_pred hhcCcCCEEEEccC
Q 021114 174 ETISGSDLVLLLIS 187 (317)
Q Consensus 174 e~v~~ADvVILavP 187 (317)
+++++||+||++..
T Consensus 79 ~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 79 TAFKDADVALLVGA 92 (329)
T ss_dssp HHTTTCSEEEECCC
T ss_pred HHhCCCCEEEEeCC
Confidence 99999999998754
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=95.16 E-value=0.019 Score=56.45 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.6
Q ss_pred cc-cCCCCEEEEEeccchHHHHHHHHHh-hhhhhcCCceEEEEecC
Q 021114 106 DA-FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~-l~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r~ 149 (317)
.+ |+| ++++|+|+|+||..+|+.|+. + |++|+...|+
T Consensus 207 ~~~l~g-ktvgI~G~G~VG~~vA~~l~~~~------G~kVv~~sD~ 245 (419)
T 1gtm_A 207 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSDS 245 (419)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEECS
T ss_pred CcccCC-CEEEEEcCCHHHHHHHHHHHHhc------CCEEEEEeCC
Confidence 45 999 999999999999999999999 8 9998755554
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=95.14 E-value=0.064 Score=51.14 Aligned_cols=94 Identities=13% Similarity=0.110 Sum_probs=55.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC--CcccHHHHHH----CC-----cee--cCC-----------
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARA----AG-----FTE--ENG----------- 167 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~--~~~s~~~A~~----~G-----~~~--~~~----------- 167 (317)
.||||+|+|.||.-+++.|.+. .+++++...+. +.+......+ .| ... ++.
T Consensus 4 ikVgI~G~GrIGr~l~R~l~~~-----p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v 78 (337)
T 3e5r_O 4 IKIGINGFGRIGRLVARVALQS-----EDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTV 78 (337)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEE
T ss_pred eEEEEECcCHHHHHHHHHHhCC-----CCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEE
Confidence 4899999999999999998764 14565544442 2222222211 11 110 000
Q ss_pred -CcCCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 168 -TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 168 -~~~~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
...+++++- .++|+|+.|+|.....+.....+. .|+ +|++.++
T Consensus 79 ~~~~dp~~l~w~~~~vDvV~eaTg~~~~~e~a~~~l~---aGak~VVIs~pa 127 (337)
T 3e5r_O 79 FGIRNPDEIPWAEAGAEYVVESTGVFTDKEKAAAHLK---GGAKKVVISAPS 127 (337)
T ss_dssp ECCSCGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHH---TTCSEEEESSCC
T ss_pred EecCChHHccccccCCCEEEECCCchhhHHHHHHHHH---cCCCEEEEecCC
Confidence 011455431 479999999999888776665443 455 6665543
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.13 Score=48.05 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=62.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc-CC-HHhh---c-----C
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GD-IYET---I-----S 177 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~-~~e~---v-----~ 177 (317)
+| .+|.|+|.|.+|...++.++.. |.+| ++.+.+++..+.+++.|.... +... .+ .+++ . .
T Consensus 168 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~V-i~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 168 LG-TTVLVIGAGPIGLVSVLAAKAY------GAFV-VCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEE-EEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEE-EEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCC
Confidence 57 8999999999999999999988 9885 445445556677888886310 1110 12 2222 2 3
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..|+|+-++.... .+++.+..++++..++..+
T Consensus 240 g~D~vid~~g~~~---~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 240 LPNVTIDCSGNEK---CITIGINITRTGGTLMLVG 271 (352)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred CCCEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 5899999987642 3555566777777666554
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.10 E-value=0.029 Score=53.97 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=56.7
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC--cccHHHH---HHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEA---RAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A---~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|.|||||| .|..|..+.+.|.+. . ..++....... .+..... .......+ ..+.++...++|+||+
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~h-P----~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~---~~~~~~~~~~~Dvvf~ 84 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENSILS---EFDPEKVSKNCDVLFT 84 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCCBCB---CCCHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCHHHHHHHHHHHcC-C----CcEEEEEeCcccccCChHHhChhhccCceEE---eCCHHHhhcCCCEEEE
Confidence 37899998 799999999999876 0 23443322221 1222211 00112210 1245565578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+|.....++..++ .|+.|+|.++-
T Consensus 85 alp~~~s~~~~~~~-----~g~~VIDlSsd 109 (351)
T 1vkn_A 85 ALPAGASYDLVREL-----KGVKIIDLGAD 109 (351)
T ss_dssp CCSTTHHHHHHTTC-----CSCEEEESSST
T ss_pred CCCcHHHHHHHHHh-----CCCEEEECChh
Confidence 99987766655443 68999998873
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.029 Score=53.55 Aligned_cols=96 Identities=16% Similarity=0.172 Sum_probs=63.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCH-HhhcC------cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETIS------GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~-~e~v~------~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|...-+....+. .+.+. ..|
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PG-SHVYIAGAGPVGRCAAAGARLL------GAACVI-VGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEE-EEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 57 8999999999999999999988 98 665 444445556788888863111111222 33221 589
Q ss_pred EEEEccCCch-----------HHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAA-----------QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~-----------~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||-++.... ....+++.+..++++-.++.++
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 9999997542 1235666677777777666444
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.071 Score=48.32 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=54.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------------------cccHHHHH---H--
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---A-- 159 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-------------------~~s~~~A~---~-- 159 (317)
...|++ ++|.|||+|-+|..++++|... |. ++.+.++.. .+....+. +
T Consensus 23 q~~l~~-~~VlvvG~GglG~~va~~La~~------Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n 95 (251)
T 1zud_1 23 QQKLLD-SQVLIIGLGGLGTPAALYLAGA------GVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN 95 (251)
T ss_dssp HHHHHT-CEEEEECCSTTHHHHHHHHHHT------TCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC
T ss_pred HHHHhc-CcEEEEccCHHHHHHHHHHHHc------CCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC
Confidence 466888 9999999999999999999998 87 454543221 11111111 1
Q ss_pred CCceec--CCCc--CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 021114 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 160 ~G~~~~--~~~~--~~~~e~v~~ADvVILavP~~~~~~vl~ei~ 199 (317)
.++..+ +... .+.++.++++|+||.++........+++..
T Consensus 96 p~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~ 139 (251)
T 1zud_1 96 PDIQLTALQQRLTGEALKDAVARADVVLDCTDNMATRQEINAAC 139 (251)
T ss_dssp TTSEEEEECSCCCHHHHHHHHHHCSEEEECCSSHHHHHHHHHHH
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 121110 0001 134567889999999998665555666544
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.06 E-value=0.07 Score=49.97 Aligned_cols=93 Identities=12% Similarity=0.081 Sum_probs=61.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhc-----Cc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI-----SG 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~e~v-----~~ 178 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ +.+.+++..+.+++.|.... +.. ..+..+.+ ..
T Consensus 171 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi-~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g 242 (356)
T 1pl8_A 171 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVV-VTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCK 242 (356)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEE-EEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEE-EECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCC
Confidence 57 8999999999999999999988 98 665 44444555678888886320 100 00111122 35
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.|+||-++... ..+++.+..++++-.++..+
T Consensus 243 ~D~vid~~g~~---~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 243 PEVTIECTGAE---ASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp CSEEEECSCCH---HHHHHHHHHSCTTCEEEECS
T ss_pred CCEEEECCCCh---HHHHHHHHHhcCCCEEEEEe
Confidence 89999998753 23455566778877766554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.01 E-value=0.041 Score=51.37 Aligned_cols=94 Identities=18% Similarity=0.158 Sum_probs=63.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC------cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~------~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+...+ +++..+.+++.|.... +....+..+.+. ..|
T Consensus 167 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D 238 (348)
T 2d8a_A 167 SG-KSVLITGAGPLGLLGIAVAKAS------GAYPVIVSEP-SDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVD 238 (348)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEECS-CHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECC-CHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCC
Confidence 78 9999999999999999999998 98 7755444 4555667777775310 111123333332 589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+||-++... +.+++..+.++++..++..+.
T Consensus 239 ~vid~~g~~---~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 239 VFLEFSGAP---KALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEECSCCH---HHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCCH---HHHHHHHHHHhcCCEEEEEcc
Confidence 999998853 345555666777766665543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.091 Score=45.04 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=46.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC----HHhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD----IYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~----~~e~v~~ADvVILav 186 (317)
|+|.|+| .|.+|..+++.|.+. |++|++..|+..+..+ . .++..-.....+ +.+++++.|+||.+.
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~-~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~a 71 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTT------DYQIYAGARKVEQVPQ-Y--NNVKAVHFDVDWTPEEMAKQLHGMDAIINVS 71 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTS------SCEEEEEESSGGGSCC-C--TTEEEEECCTTSCHHHHHTTTTTCSEEEECC
T ss_pred CeEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCccchhh-c--CCceEEEecccCCHHHHHHHHcCCCEEEECC
Confidence 5899999 899999999999999 9998777766432111 0 222111112333 456788999999988
Q ss_pred CCc
Q 021114 187 SDA 189 (317)
Q Consensus 187 P~~ 189 (317)
...
T Consensus 72 g~~ 74 (219)
T 3dqp_A 72 GSG 74 (219)
T ss_dssp CCT
T ss_pred cCC
Confidence 654
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.036 Score=52.18 Aligned_cols=94 Identities=17% Similarity=0.203 Sum_probs=62.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhc----CcCC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETI----SGSD 180 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v----~~AD 180 (317)
.++| ++|.|+|.|.+|...++.++.. |.+|++..++.. +..+.+++.|....+ .. +..+.+ ...|
T Consensus 178 ~~~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 178 TLNC-RKVLVVGTGPIGVLFTLLFRTY------GLEVWMANRREPTEVEQTVIEETKTNYYN-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp SSTT-CEEEEESCHHHHHHHHHHHHHH------TCEEEEEESSCCCHHHHHHHHHHTCEEEE-CT-TCSHHHHHHHCCEE
T ss_pred cCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCCccchHHHHHHHHhCCceec-hH-HHHHHHHHhCCCCC
Confidence 4559 9999999999999999999998 998766555430 345677777765311 11 222222 3589
Q ss_pred EEEEccCCchHHHHH-HHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNY-EKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl-~ei~~~lk~gaiVi~~~ 212 (317)
+||-++.... .+ ++..+.|+++..++..+
T Consensus 249 ~vid~~g~~~---~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 249 VIIDATGADV---NILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp EEEECCCCCT---HHHHHHGGGEEEEEEEEECS
T ss_pred EEEECCCChH---HHHHHHHHHHhcCCEEEEEe
Confidence 9999887643 33 55667777766555443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.98 E-value=0.053 Score=51.53 Aligned_cols=97 Identities=22% Similarity=0.233 Sum_probs=64.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhc------CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETI------SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~e~v------~~ADv 181 (317)
+| .+|.|+|.|.+|...++.++.. |...+++.+.+++..+.+++.|...-+....+ ..+.+ ...|+
T Consensus 185 ~g-~~VlV~GaG~vG~~aiqlAk~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dv 257 (398)
T 1kol_A 185 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 257 (398)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHC------CCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCE
Confidence 57 8999999999999999999988 98434455555566778888886321111112 33322 25799
Q ss_pred EEEccCCch------------HHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAA------------QADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~------------~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
||-++.... ....+++.+..++++-.++..+
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 258 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 999987542 1135666667777776666544
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.068 Score=49.59 Aligned_cols=93 Identities=17% Similarity=0.198 Sum_probs=63.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC----cCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~----~ADvVI 183 (317)
+| .+|.|+|.|.+|...++.++.. |.+|+.. +.+++..+.+++.|.... +....+..+.+. ..|+|+
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~Vi~~-~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 166 PG-QWVVISGIGGLGHVAVQYARAM------GLRVAAV-DIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TT-SEEEEECCSTTHHHHHHHHHHT------TCEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEE-eCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 57 8999999999999999999998 9987544 444556778888885320 111124444333 579999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.++... +.+++....++++-.++..+
T Consensus 238 d~~g~~---~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 238 VTAVSP---KAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEECS
T ss_pred EeCCCH---HHHHHHHHHhccCCEEEEeC
Confidence 887643 34556666777777666553
|
| >4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.1 Score=50.07 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=56.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cCC-cccHHHH-------------HHCCceecCCCcCCHHhh
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG-SRSFAEA-------------RAAGFTEENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~-r~~-~~s~~~A-------------~~~G~~~~~~~~~~~~e~ 175 (317)
.+||||| .|..|.-+.+.|.+. . ..++.... ++. .+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpk_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 799999999987765 0 23443222 221 1223221 111111 1133 34
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.++|+||+|+|.....++..++. +.|+.++|.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpk_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999988777777654 458889987763
|
| >4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.1 Score=50.07 Aligned_cols=89 Identities=12% Similarity=0.092 Sum_probs=56.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cCC-cccHHHH-------------HHCCceecCCCcCCHHhh
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RKG-SRSFAEA-------------RAAGFTEENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~-r~~-~~s~~~A-------------~~~G~~~~~~~~~~~~e~ 175 (317)
.+||||| .|..|.-+.+.|.+. . ..++.... ++. .+..... .+.-+. ..+. +.
T Consensus 8 ~kVaIvGATGyvG~eLlrlL~~h-P----~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~-----~~~~-~~ 76 (359)
T 4dpl_A 8 LKAAILGATGLVGIEYVRMLSNH-P----YIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIK-----PTDP-KL 76 (359)
T ss_dssp EEEEETTTTSTTHHHHHHHHTTC-S----SEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCE-----ECCG-GG
T ss_pred CeEEEECCCCHHHHHHHHHHHhC-C----CceEEEEECchhcCCChhHhcccccccccccccccceEE-----eCCH-HH
Confidence 5899999 799999999987765 0 23443222 221 1223221 111111 1133 34
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+.++|+||+|+|.....++..++. +.|+.++|.++-
T Consensus 77 ~~~vDvvf~a~p~~~s~~~a~~~~---~~G~~vIDlSa~ 112 (359)
T 4dpl_A 77 MDDVDIIFSPLPQGAAGPVEEQFA---KEGFPVISNSPD 112 (359)
T ss_dssp CTTCCEEEECCCTTTHHHHHHHHH---HTTCEEEECSST
T ss_pred hcCCCEEEECCChHHHHHHHHHHH---HCCCEEEEcCCC
Confidence 579999999999988777777654 468889987763
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.046 Score=51.45 Aligned_cols=94 Identities=12% Similarity=0.099 Sum_probs=61.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |...+++.+.+++..+.+++.|...- +....+..+.+. ..|+|
T Consensus 190 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 190 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEE
Confidence 46 8999999999999999999988 98433455445556677777775310 111123333332 47999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+-++... +.+++....++++-.++..+
T Consensus 263 id~~g~~---~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 263 LESTGSP---EILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp EECSCCH---HHHHHHHHTEEEEEEEEECC
T ss_pred EECCCCH---HHHHHHHHHHhcCCEEEEeC
Confidence 9888753 34556667777776666544
|
| >2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.065 Score=52.94 Aligned_cols=69 Identities=14% Similarity=0.133 Sum_probs=49.0
Q ss_pred cCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 108 FNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+..+++|.|||+|-.|.+ +|+.|++. |++|.+.+.......+...+.|+....+ .+. +.++.+|+||+.
T Consensus 16 ~~~~~~v~viGiG~sG~s~~A~~l~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~~g--~~~-~~~~~a~~vv~s 85 (491)
T 2f00_A 16 MRRVRHIHFVGIGGAGMGGIAEVLANE------GYQISGSDLAPNPVTQQLMNLGATIYFN--HRP-ENVRDASVVVVS 85 (491)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCEEESS--CCG-GGGTTCSEEEEC
T ss_pred cccCCEEEEEEcCHHHHHHHHHHHHhC------CCeEEEECCCCCHHHHHHHHCCCEEECC--CCH-HHcCCCCEEEEC
Confidence 344589999999999998 99999999 9998766655443334455678764221 133 446789999985
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.87 E-value=0.2 Score=47.16 Aligned_cols=71 Identities=14% Similarity=0.040 Sum_probs=50.8
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
..|+| .+|++||= +++..|++..+... |+++.+...+.- ...+.....++.. ..+++|+++++|+|.
T Consensus 150 g~l~g-l~ia~vGD~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~----~~d~~eav~~aDvvy 218 (301)
T 2ef0_A 150 GGLAG-LEVAWVGDGNNVLNSLLEVAPLA------GLKVRVATPKGYEPDPGLLKRANAFF----THDPKEAALGAHALY 218 (301)
T ss_dssp SCCTT-CEEEEESCCCHHHHHHHHHHHHH------TCEEEEECCTTCCCCHHHHHHHTCEE----ESCHHHHHTTCSEEE
T ss_pred CCcCC-cEEEEECCCchhHHHHHHHHHHc------CCEEEEECCchhcCCHHHHhhceeEE----ECCHHHHhcCCCEEE
Confidence 45889 99999996 89999999999998 998877654321 1111111112443 569999999999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
.-+=
T Consensus 219 ~~~~ 222 (301)
T 2ef0_A 219 TDVW 222 (301)
T ss_dssp ECCC
T ss_pred ecCc
Confidence 8554
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.14 Score=50.29 Aligned_cols=79 Identities=14% Similarity=0.083 Sum_probs=53.2
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+++| ++|.|||.|..|.+-++.|.+. |.+|++......+..+...+ .++....+.. + ++-+.++|+||
T Consensus 7 ~~~l~~-~~vlVvGgG~va~~k~~~L~~~------ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~-~-~~~l~~~~lVi 77 (457)
T 1pjq_A 7 FCQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGPF-D-ETLLDSCWLAI 77 (457)
T ss_dssp EECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESSC-C-GGGGTTCSEEE
T ss_pred EEECCC-CEEEEECCCHHHHHHHHHHHhC------cCEEEEEcCCCCHHHHHHHhcCCEEEEECCC-C-ccccCCccEEE
Confidence 457899 9999999999999999999999 99887766543333332222 2332211111 2 23467899999
Q ss_pred EccCCchHH
Q 021114 184 LLISDAAQA 192 (317)
Q Consensus 184 LavP~~~~~ 192 (317)
.++.+....
T Consensus 78 ~at~~~~~n 86 (457)
T 1pjq_A 78 AATDDDTVN 86 (457)
T ss_dssp ECCSCHHHH
T ss_pred EcCCCHHHH
Confidence 987776543
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.73 E-value=0.17 Score=43.15 Aligned_cols=70 Identities=20% Similarity=0.107 Sum_probs=45.5
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC-HHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~-~~e~v~~ADvVILavP~ 188 (317)
|||.|+|. |.+|..+++.|.+. |++|++..|+.. ........++..-.....+ ..+++.++|+||.+...
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~-~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRR------GHEVLAVVRDPQ-KAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH-HHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHC------CCEEEEEEeccc-ccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 57999996 99999999999999 999877766532 2222212333211011111 11678899999998754
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.086 Score=49.66 Aligned_cols=72 Identities=21% Similarity=0.124 Sum_probs=41.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CC-c--eecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AG-F--TEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G-~--~~~~~~~~~~~e~v~~ADvVILa 185 (317)
|||+||| .|.+|.+++..|.... ++..++.+.+... .....+.+ .. . ........+..+.+++||+||++
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~---~~~~el~L~Di~~-~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ 76 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTEEEEEECSST-THHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCC---CCCceEEEEecCC-CchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEe
Confidence 6899999 9999999999986530 1123554444432 22222221 11 1 11000002556789999999998
Q ss_pred cC
Q 021114 186 IS 187 (317)
Q Consensus 186 vP 187 (317)
..
T Consensus 77 ag 78 (312)
T 3hhp_A 77 AG 78 (312)
T ss_dssp CS
T ss_pred CC
Confidence 74
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.095 Score=46.99 Aligned_cols=72 Identities=24% Similarity=0.302 Sum_probs=48.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--HHHH------HHCCceecCCCcCC---HHhhcCcC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--FAEA------RAAGFTEENGTLGD---IYETISGS 179 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~~~A------~~~G~~~~~~~~~~---~~e~v~~A 179 (317)
++|.|+|. |.+|.++++.|.+. |++|++..|..... .+.+ ...|+..-.....+ +.++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~ 78 (308)
T 1qyc_A 5 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 78 (308)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCC
Confidence 78999995 99999999999999 99887766653211 1111 22454321122333 45678899
Q ss_pred CEEEEccCCc
Q 021114 180 DLVLLLISDA 189 (317)
Q Consensus 180 DvVILavP~~ 189 (317)
|+||.+....
T Consensus 79 d~vi~~a~~~ 88 (308)
T 1qyc_A 79 DVVISTVGSL 88 (308)
T ss_dssp SEEEECCCGG
T ss_pred CEEEECCcch
Confidence 9999988754
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.075 Score=50.24 Aligned_cols=70 Identities=21% Similarity=0.244 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCC--ceecCCCcCCHH
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAG--FTEENGTLGDIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G--~~~~~~~~~~~~ 173 (317)
..|+| .+|++||=| ++..|++..+... |+++.+...+. ..-.+. +.+.| +.. ..+++
T Consensus 144 g~l~g-l~va~vGD~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~ 212 (307)
T 2i6u_A 144 GALRG-LRLSYFGDGANNMAHSLLLGGVTA------GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTV----TADAH 212 (307)
T ss_dssp SCCTT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEE----ESCHH
T ss_pred CCcCC-eEEEEECCCCcCcHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHH
Confidence 46788 999999986 9999999999998 99887765432 112122 23556 332 56999
Q ss_pred hhcCcCCEEEEcc
Q 021114 174 ETISGSDLVLLLI 186 (317)
Q Consensus 174 e~v~~ADvVILav 186 (317)
|+++++|+|..-+
T Consensus 213 eav~~aDvvy~~~ 225 (307)
T 2i6u_A 213 AAAAGADVLVTDT 225 (307)
T ss_dssp HHHTTCSEEEECC
T ss_pred HHhcCCCEEEecc
Confidence 9999999999854
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.16 Score=47.76 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=59.9
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----CceecCCCcCCHHhh-cCcCCEE
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYET-ISGSDLV 182 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~~~~~~~~~e~-v~~ADvV 182 (317)
-+| ++|..||+|..|.+.....+.. |.+| ++.+.++...+.|++. |...-.-...+..+. -...|+|
T Consensus 121 ~~g-~rVLDIGcG~G~~ta~~lA~~~------ga~V-~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~d~~FDvV 192 (298)
T 3fpf_A 121 RRG-ERAVFIGGGPLPLTGILLSHVY------GMRV-NVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVIDGLEFDVL 192 (298)
T ss_dssp CTT-CEEEEECCCSSCHHHHHHHHTT------CCEE-EEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGGGCCCSEE
T ss_pred CCc-CEEEEECCCccHHHHHHHHHcc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCCCCCcCEE
Confidence 356 9999999999765543333334 6665 5777766666666543 430000001233332 2467999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
++..-.....++++++...||||..|+.
T Consensus 193 ~~~a~~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 193 MVAALAEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp EECTTCSCHHHHHHHHHHHCCTTCEEEE
T ss_pred EECCCccCHHHHHHHHHHHcCCCcEEEE
Confidence 9876544556789999999999988763
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.12 Score=49.77 Aligned_cols=68 Identities=16% Similarity=0.114 Sum_probs=47.7
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHC--------CceecCCCcCCHHh
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAA--------GFTEENGTLGDIYE 174 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~--------G~~~~~~~~~~~~e 174 (317)
|+| .+|+|||=+ ++..|++..+... |+++.+..... +.-.+.+.+. ++.. ..+++|
T Consensus 186 l~g-lkva~vGD~~nva~Sl~~~l~~l------G~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~----~~d~~e 254 (353)
T 3sds_A 186 LEG-LKIAWVGDANNVLFDLAIAATKM------GVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQ----TTVPEV 254 (353)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEE----ESCHHH
T ss_pred cCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEE----ECCHHH
Confidence 589 999999965 6888888888888 99887664432 2222333321 2332 569999
Q ss_pred hcCcCCEEEEcc
Q 021114 175 TISGSDLVLLLI 186 (317)
Q Consensus 175 ~v~~ADvVILav 186 (317)
+++++|+|+.-+
T Consensus 255 av~~aDVvytd~ 266 (353)
T 3sds_A 255 AVKDADVIVTDT 266 (353)
T ss_dssp HTTTCSEEEECC
T ss_pred HhcCCCEEEeCC
Confidence 999999998754
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.13 Score=50.54 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=65.5
Q ss_pred cccCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCC--ceecCCCcCCH
Q 021114 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAG--FTEENGTLGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G--~~~~~~~~~~~ 172 (317)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++ +... +.++ ..| +.. ..+.
T Consensus 314 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~D-P~~~--~~~~~~~~~~~~~----~~~~ 379 (450)
T 3gg2_A 314 GNVQG-RCVAIWGLSFKPGTDDMREAPSLVLIEKLLEV------GCRVRVYD-PVAM--KEAQKRLGDKVEY----TTDM 379 (450)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEEC-SSCH--HHHHHHHGGGSEE----CSSH
T ss_pred ccCCC-CEEEEEeeeeCCCCcccccChHHHHHHHHHHC------CCEEEEEC-CCCc--HHHHHhcCcccee----cCCH
Confidence 46789 999999973 3367788888888 99876654 3221 2222 223 332 4588
Q ss_pred HhhcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCc
Q 021114 173 YETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+|+++++|.|+++|.-.+..+ -++++...|+ +.+|+|..++
T Consensus 380 ~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~-~~~i~D~r~~ 421 (450)
T 3gg2_A 380 YDAVRGAEALFHVTEWKEFRMPDWSALSQAMA-ASLVIDGRNV 421 (450)
T ss_dssp HHHTTTCSCEEECSCCGGGSSCCHHHHHHHSS-SCEEEESSCC
T ss_pred HHHhcCCCEEEEccCCHHHhhcCHHHHHHhcC-CCEEEECCCC
Confidence 899999999999999877654 2456666675 5688888775
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=94.47 E-value=0.094 Score=48.93 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=63.8
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc------CcCCE
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v------~~ADv 181 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+.. ++ ++..+.+++.|...-+ ...+..+.+ ...|+
T Consensus 150 ~g-~~VlV~Ga~g~iG~~~~q~a~~~------Ga~Vi~~-~~-~~~~~~~~~lGa~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 150 DG-QTVLIQGGGGGVGHVAIQIALAR------GARVFAT-AR-GSDLEYVRDLGATPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEE-EC-HHHHHHHHHHTSEEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEE-eC-HHHHHHHHHcCCCEec-cCCCHHHHHHHHhcCCCceE
Confidence 57 8999999 799999999999998 9987655 43 4456777777765311 122344333 25899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+-++.. +.++..+..++++-.++.+++.
T Consensus 220 vid~~g~----~~~~~~~~~l~~~G~iv~~g~~ 248 (343)
T 3gaz_A 220 VYDTLGG----PVLDASFSAVKRFGHVVSCLGW 248 (343)
T ss_dssp EEESSCT----HHHHHHHHHEEEEEEEEESCCC
T ss_pred EEECCCc----HHHHHHHHHHhcCCeEEEEccc
Confidence 9998875 3455556677777776665543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=94.46 E-value=0.14 Score=46.42 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=49.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH---HHHCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE---ARAAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~---A~~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
++|.|+| .|.+|.++++.|.+. |++|++..|+.....+. ....|+........+ +.++++++|+||.
T Consensus 12 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~ 85 (318)
T 2r6j_A 12 SKILIFGGTGYIGNHMVKGSLKL------GHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVIS 85 (318)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred CeEEEECCCchHHHHHHHHHHHC------CCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEE
Confidence 5899999 599999999999999 99887777764322221 123454321122333 4567889999999
Q ss_pred ccCCc
Q 021114 185 LISDA 189 (317)
Q Consensus 185 avP~~ 189 (317)
+....
T Consensus 86 ~a~~~ 90 (318)
T 2r6j_A 86 ALAFP 90 (318)
T ss_dssp CCCGG
T ss_pred CCchh
Confidence 88753
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.08 Score=44.95 Aligned_cols=93 Identities=13% Similarity=0.082 Sum_probs=60.4
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+| .|.+|.++++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 38 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 109 (198)
T 1pqw_A 38 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 109 (198)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEeeCCChHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCe
Confidence 57 9999999 699999999999998 9887655544 444455666664210 11111222222 2479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+-++.. +.+++..+.|+++..++..+.
T Consensus 110 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g~ 138 (198)
T 1pqw_A 110 VVLNSLAG----EAIQRGVQILAPGGRFIELGK 138 (198)
T ss_dssp EEEECCCT----HHHHHHHHTEEEEEEEEECSC
T ss_pred EEEECCch----HHHHHHHHHhccCCEEEEEcC
Confidence 99988753 345666777888777766554
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.081 Score=52.26 Aligned_cols=87 Identities=16% Similarity=0.183 Sum_probs=64.4
Q ss_pred CEEEEEecc----chHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWG----SQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G----~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||.+ .+|..+.++|++. | ..| +...+..... .|... +.++.|+-...|++++++
T Consensus 9 ~siAVvGas~~~~~~g~~v~~~l~~~------g~~~v-~pVnP~~~~i-----~G~~~----y~sl~~lp~~~Dlavi~v 72 (457)
T 2csu_A 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKV-YPVNIKEEEV-----QGVKA----YKSVKDIPDEIDLAIIVV 72 (457)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEE-EEECSSCSEE-----TTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEECcCCCCCchHHHHHHHHHHc------CCCEE-EEECCCCCeE-----CCEec----cCCHHHcCCCCCEEEEec
Confidence 899999998 7899999999887 5 444 4444432211 46653 567888878899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|+....+++++.... .-..+|+++.|+.
T Consensus 73 p~~~~~~~v~e~~~~-Gi~~vv~~s~G~~ 100 (457)
T 2csu_A 73 PKRFVKDTLIQCGEK-GVKGVVIITAGFG 100 (457)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCCSST
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 999999999876654 2345677888873
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.16 Score=47.10 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc----CcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v----~~ADvVI 183 (317)
+| ++|.|+|.|.+|...++.++.. |.+|+.. .++++..+.+++.|.... +....+..+.+ ...|+||
T Consensus 164 ~g-~~VlV~GaG~vG~~~~~~a~~~------Ga~Vi~~-~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vi 235 (339)
T 1rjw_A 164 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 235 (339)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEE-eCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEE
Confidence 57 8999999999999999999998 9976544 444555677778885320 11112333322 4689999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
-++... ..+++..+.++++..++..+
T Consensus 236 d~~g~~---~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 236 VTAVSK---PAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEec
Confidence 988753 24455566677766665543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.2 Score=45.27 Aligned_cols=74 Identities=23% Similarity=0.218 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------CCce---ecCC-CcCCHH
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFT---EENG-TLGDIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~---~~~~-~~~~~~ 173 (317)
..++| |+|.|.|. |-+|..+++.|.+. |++|++..|...+ .+...+ .++. ..|- ...+++
T Consensus 7 ~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~ 78 (342)
T 1y1p_A 7 VLPEG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASK-LANLQKRWDAKYPGRFETAVVEDMLKQGAYD 78 (342)
T ss_dssp SSCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHH-HHHHHHHHHHHSTTTEEEEECSCTTSTTTTT
T ss_pred cCCCC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCCccc-HHHHHHHhhccCCCceEEEEecCCcChHHHH
Confidence 44678 99999996 99999999999999 9988766665322 111111 1221 1010 012355
Q ss_pred hhcCcCCEEEEccC
Q 021114 174 ETISGSDLVLLLIS 187 (317)
Q Consensus 174 e~v~~ADvVILavP 187 (317)
+++++.|+||-+..
T Consensus 79 ~~~~~~d~vih~A~ 92 (342)
T 1y1p_A 79 EVIKGAAGVAHIAS 92 (342)
T ss_dssp TTTTTCSEEEECCC
T ss_pred HHHcCCCEEEEeCC
Confidence 67778999998764
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.13 Score=42.95 Aligned_cols=71 Identities=23% Similarity=0.315 Sum_probs=46.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILavP 187 (317)
|+|.|+|. |.+|..+++.|.+. |++|++..|+..+. ......++..-..... ++.++++++|+||.+..
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~~------g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~ 76 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRL-PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLG 76 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGS-CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEEcCCcHHHHHHHHHHHHC------CCeEEEEEeChhhc-ccccCCceEEEEecCCCHHHHHHHHcCCCEEEECcc
Confidence 78999997 99999999999999 99887776653321 1100112211011122 34567889999998876
Q ss_pred Cc
Q 021114 188 DA 189 (317)
Q Consensus 188 ~~ 189 (317)
..
T Consensus 77 ~~ 78 (206)
T 1hdo_A 77 TR 78 (206)
T ss_dssp CT
T ss_pred CC
Confidence 43
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=0.032 Score=53.03 Aligned_cols=68 Identities=22% Similarity=0.159 Sum_probs=44.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCC---HHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvV 182 (317)
.++| ++|+|||.|.+|..+++.+++. |+++++.+.... .....+ ..... ....+ +.++++++|+|
T Consensus 11 ~~~~-k~IlIlG~G~~g~~la~aa~~~------G~~vi~~d~~~~~~~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvI 79 (389)
T 3q2o_A 11 ILPG-KTIGIIGGGQLGRMMALAAKEM------GYKIAVLDPTKNSPCAQVA--DIEIV--ASYDDLKAIQHLAEISDVV 79 (389)
T ss_dssp CCTT-SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSTTCTTTTTC--SEEEE--CCTTCHHHHHHHHHTCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchHHhC--CceEe--cCcCCHHHHHHHHHhCCEe
Confidence 4688 9999999999999999999999 999876654321 111111 11111 11223 55677889988
Q ss_pred EEc
Q 021114 183 LLL 185 (317)
Q Consensus 183 ILa 185 (317)
...
T Consensus 80 ~~~ 82 (389)
T 3q2o_A 80 TYE 82 (389)
T ss_dssp EES
T ss_pred eec
Confidence 653
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.099 Score=51.62 Aligned_cols=94 Identities=16% Similarity=0.236 Sum_probs=68.2
Q ss_pred cccCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-C-CceecCCCcCCHH
Q 021114 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A-GFTEENGTLGDIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~-G~~~~~~~~~~~~ 173 (317)
..++| ++|+|.|+- +-...+++.|.+. |.+|.+++ +.. .+.+.+ . ++.. ..+++
T Consensus 318 ~~~~~-~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~------g~~v~~~D-P~~--~~~~~~~~~~~~~----~~~~~ 383 (446)
T 4a7p_A 318 GDVRG-KTVGILGLTFKPNTDDMRDAPSLSIIAALQDA------GATVKAYD-PEG--VEQASKMLTDVEF----VENPY 383 (446)
T ss_dssp SCCTT-CEEEEECCSSSTTSCCCTTCSHHHHHHHHHHT------SCEEEEEC-SSC--HHHHGGGCSSCCB----CSCHH
T ss_pred ccCCC-CEEEEEEEEeCCCCcccccChHHHHHHHHHHC------CCEEEEEC-CCC--CHhHHHhcCCceE----ecChh
Confidence 45789 999999997 6788999999998 99876654 322 223322 1 3331 45888
Q ss_pred hhcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCc
Q 021114 174 ETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|+++++|+|++++.-.+..+ -++++...|+. .+|+|..++
T Consensus 384 ~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~-~~i~D~r~~ 424 (446)
T 4a7p_A 384 AAADGADALVIVTEWDAFRALDLTRIKNSLKS-PVLVDLRNI 424 (446)
T ss_dssp HHHTTBSEEEECSCCTTTTSCCHHHHHTTBSS-CBEECSSCC
T ss_pred HHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCC-CEEEECCCC
Confidence 99999999999998776644 24567777754 678888876
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=94.37 E-value=0.079 Score=50.06 Aligned_cols=66 Identities=20% Similarity=0.197 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..|+| .||++||=| ++..|++..+... |+++.+...+.-.. + ..+.|. ..+++|+++++|+|
T Consensus 143 g~l~g-lkva~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~-~-~~~~g~------~~d~~eav~~aDvv 207 (304)
T 3r7f_A 143 NTFKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSEWQD-E-ENTFGT------YVSMDEAVESSDVV 207 (304)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSC-T-TCSSCE------ECCHHHHHHHCSEE
T ss_pred CCCCC-CEEEEEcCCCCcchHHHHHHHHHHc------CCEEEEECCCccCc-c-hhhcCc------cCCHHHHhCCCCEE
Confidence 45889 999999975 5999999999998 99877664332111 1 012232 35899999999999
Q ss_pred EEcc
Q 021114 183 LLLI 186 (317)
Q Consensus 183 ILav 186 (317)
....
T Consensus 208 yt~~ 211 (304)
T 3r7f_A 208 MLLR 211 (304)
T ss_dssp EECC
T ss_pred Eecc
Confidence 8853
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.32 E-value=0.043 Score=51.33 Aligned_cols=93 Identities=25% Similarity=0.293 Sum_probs=62.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC------cCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~------~AD 180 (317)
+| .+|.|+|.|.+|...++.++.. |. +|+ ..+.+++..+.+++.|...- +....+..+.+. ..|
T Consensus 166 ~g-~~VlV~GaG~vG~~a~qla~~~------Ga~~Vi-~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D 237 (352)
T 3fpc_A 166 LG-DTVCVIGIGPVGLMSVAGANHL------GAGRIF-AVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVD 237 (352)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSSEE-EECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEE-EECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCC
Confidence 57 8999999999999999999988 98 564 45555556778888886421 111123333221 489
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++.... .+++.+..++++-.++..+
T Consensus 238 ~v~d~~g~~~---~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 238 KVVIAGGDVH---TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp EEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCChH---HHHHHHHHHhcCCEEEEec
Confidence 9999887643 3455556677777666554
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.11 Score=49.32 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=48.9
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHH----HHCC--ceecCCCcCCHHh
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAG--FTEENGTLGDIYE 174 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A----~~~G--~~~~~~~~~~~~e 174 (317)
..|+| .+|++||=|+ +..|++..+... |+++.+..... +.-.+.+ .+.| +.. ..+++|
T Consensus 151 g~l~g-l~va~vGD~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~----~~d~~e 219 (321)
T 1oth_A 151 SSLKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLL----TNDPLE 219 (321)
T ss_dssp SCCTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEE----ESCHHH
T ss_pred CCcCC-cEEEEECCchhhHHHHHHHHHHc------CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEE----EECHHH
Confidence 45788 9999999764 777777777777 99887765432 1112222 2345 332 569999
Q ss_pred hcCcCCEEEEcc
Q 021114 175 TISGSDLVLLLI 186 (317)
Q Consensus 175 ~v~~ADvVILav 186 (317)
+++++|+|..-+
T Consensus 220 av~~aDvvy~d~ 231 (321)
T 1oth_A 220 AAHGGNVLITDT 231 (321)
T ss_dssp HHTTCSEEEECC
T ss_pred HhccCCEEEEec
Confidence 999999999954
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.078 Score=50.21 Aligned_cols=92 Identities=17% Similarity=0.224 Sum_probs=61.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
+| .+|.|+|.|.+|...++.++.. |.+|+... .+++..+.+++.|...- -...+ .+++....|+||-+
T Consensus 194 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~Vi~~~-~~~~~~~~a~~lGa~~v-i~~~~~~~~~~~~~g~Dvvid~ 264 (369)
T 1uuf_A 194 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFT-TSEAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILNT 264 (369)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SSGGGHHHHHHHTCSEE-EETTCHHHHHTTTTCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe-CCHHHHHHHHHcCCcEE-eccccHHHHHHhhcCCCEEEEC
Confidence 57 8999999999999999999998 98865444 44556777888785320 00112 22233568999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.... .+++..+.++++..++..+
T Consensus 265 ~g~~~---~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 265 VAAPH---NLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp CSSCC---CHHHHHTTEEEEEEEEECC
T ss_pred CCCHH---HHHHHHHHhccCCEEEEec
Confidence 88543 2345556777776666554
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=0.081 Score=50.05 Aligned_cols=73 Identities=18% Similarity=0.196 Sum_probs=53.8
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..|+| .+|++||= |++..|++..+... |+++.+...+ ++...+.+++.|...+ ...+++|++++
T Consensus 151 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (308)
T 1ml4_A 151 GRIDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKVV--ETTTLEDVIGK 221 (308)
T ss_dssp SCSSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCEE--EESCTHHHHTT
T ss_pred CCCCC-eEEEEeCCCCcCchHHHHHHHHHHC------CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 45788 89999997 48999999999988 9988776543 2223355566664310 14689999999
Q ss_pred CCEEEEccC
Q 021114 179 SDLVLLLIS 187 (317)
Q Consensus 179 ADvVILavP 187 (317)
+|+|..-.=
T Consensus 222 aDvvyt~~~ 230 (308)
T 1ml4_A 222 LDVLYVTRI 230 (308)
T ss_dssp CSEEEECCC
T ss_pred CCEEEECCc
Confidence 999998653
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.17 Score=45.75 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=48.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC-c----ccHHH---HHHCCceecCCCcCC---HHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S----RSFAE---ARAAGFTEENGTLGD---IYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~----~s~~~---A~~~G~~~~~~~~~~---~~e~v~~A 179 (317)
|+|.|+| .|.+|.++++.|.+. |++|++..|+. . ...+. ....|+..-.....+ +.++++++
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~ 78 (321)
T 3c1o_A 5 EKIIIYGGTGYIGKFMVRASLSF------SHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQV 78 (321)
T ss_dssp CCEEEETTTSTTHHHHHHHHHHT------TCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTC
T ss_pred cEEEEEcCCchhHHHHHHHHHhC------CCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCC
Confidence 7899999 599999999999998 99887777764 1 11111 123454221112333 55678899
Q ss_pred CEEEEccCCc
Q 021114 180 DLVLLLISDA 189 (317)
Q Consensus 180 DvVILavP~~ 189 (317)
|+||.+....
T Consensus 79 d~vi~~a~~~ 88 (321)
T 3c1o_A 79 DIVISALPFP 88 (321)
T ss_dssp SEEEECCCGG
T ss_pred CEEEECCCcc
Confidence 9999987653
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.2 Score=42.80 Aligned_cols=71 Identities=18% Similarity=0.258 Sum_probs=46.9
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEcc
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILav 186 (317)
+|+|.|+| .|.+|..+++.|.+. |++|++..|...+.... ..++..-.....+ +.++++++|+||.+.
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a 75 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNR------GFEVTAVVRHPEKIKIE--NEHLKVKKADVSSLDEVCEVCKGADAVISAF 75 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTT------TCEEEEECSCGGGCCCC--CTTEEEECCCTTCHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC------CCEEEEEEcCcccchhc--cCceEEEEecCCCHHHHHHHhcCCCEEEEeC
Confidence 47999999 699999999999999 99887776653321110 0122110111223 456788999999987
Q ss_pred CCc
Q 021114 187 SDA 189 (317)
Q Consensus 187 P~~ 189 (317)
...
T Consensus 76 ~~~ 78 (227)
T 3dhn_A 76 NPG 78 (227)
T ss_dssp CC-
T ss_pred cCC
Confidence 654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.2 Score=44.76 Aligned_cols=72 Identities=18% Similarity=0.193 Sum_probs=48.3
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC-c-----ccHH---HHHHCCceecCCCcCC---HHhhcCc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-S-----RSFA---EARAAGFTEENGTLGD---IYETISG 178 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~-----~s~~---~A~~~G~~~~~~~~~~---~~e~v~~ 178 (317)
++|.|+|. |.+|.++++.|.+. |++|++..|+. . ...+ .....|+..-.....+ +.+++++
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~ 76 (307)
T 2gas_A 3 NKILILGPTGAIGRHIVWASIKA------GNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQ 76 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHH------TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTT
T ss_pred cEEEEECCCchHHHHHHHHHHhC------CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhC
Confidence 78999995 99999999999999 99887776654 1 1111 1123454221112333 4567889
Q ss_pred CCEEEEccCCc
Q 021114 179 SDLVLLLISDA 189 (317)
Q Consensus 179 ADvVILavP~~ 189 (317)
+|+||.+....
T Consensus 77 ~d~vi~~a~~~ 87 (307)
T 2gas_A 77 VDIVICAAGRL 87 (307)
T ss_dssp CSEEEECSSSS
T ss_pred CCEEEECCccc
Confidence 99999988753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=93.95 E-value=0.06 Score=49.09 Aligned_cols=91 Identities=21% Similarity=0.184 Sum_probs=60.8
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~~~e~v~~ADvVILa 185 (317)
+| ++|.|+|. |.+|...++.++.. |.+|+...++ ++..+.+++.|.... +... .+..+.+...|+|+-
T Consensus 125 ~g-~~vlV~Ga~G~vG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid- 195 (302)
T 1iz0_A 125 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE- 195 (302)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-
Confidence 57 99999998 99999999999998 9987655543 444567777775320 0000 122334467899998
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.. +.+++....++++..++..+
T Consensus 196 ~g~----~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 196 VRG----KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp CSC----TTHHHHHTTEEEEEEEEEC-
T ss_pred CCH----HHHHHHHHhhccCCEEEEEe
Confidence 765 24556667777776666544
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.14 Score=47.92 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=60.7
Q ss_pred cCCCCEEEEEeccchHHHH-HHHH-HhhhhhhcCCce-EEEEecCCcc---cHHHHHHCCceecCCCcCCHHhhcC----
Q 021114 108 FNGINQIGVIGWGSQGPAQ-AQNL-RDSLAEAKSDIV-VKVGLRKGSR---SFAEARAAGFTEENGTLGDIYETIS---- 177 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~Ai-A~~L-r~~~~~~~~G~~-Vivg~r~~~~---s~~~A~~~G~~~~~~~~~~~~e~v~---- 177 (317)
+.+ .+|.|+|.|.+|... ++.+ +.. |.+ |+...+ +++ ..+.+++.|....+....+..+ +.
T Consensus 171 ~~~-~~VlV~GaG~vG~~a~iqla~k~~------Ga~~Vi~~~~-~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~g 241 (357)
T 2b5w_A 171 WDP-SSAFVLGNGSLGLLTLAMLKVDDK------GYENLYCLGR-RDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYE 241 (357)
T ss_dssp CCC-CEEEEECCSHHHHHHHHHHHHCTT------CCCEEEEEEC-CCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSC
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHHHc------CCcEEEEEeC-CcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCC
Confidence 345 899999999999999 9998 888 986 655444 344 5678888887531111123333 32
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..|+||-++.... .+++....++++-.++..+
T Consensus 242 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 242 QMDFIYEATGFPK---HAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp CEEEEEECSCCHH---HHHHHHHHEEEEEEEEECC
T ss_pred CCCEEEECCCChH---HHHHHHHHHhcCCEEEEEe
Confidence 4799998887532 3455556667766665444
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=93.94 E-value=0.058 Score=49.76 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=49.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH------HHHCCceecCCCcCC---HHhhcC--cC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE------ARAAGFTEENGTLGD---IYETIS--GS 179 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~------A~~~G~~~~~~~~~~---~~e~v~--~A 179 (317)
++|.|+|. |.+|..+++.|.+. |++|++..|......+. ....++..-.+...+ +.++++ ++
T Consensus 11 ~~IlVtGatG~iG~~l~~~L~~~------g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~ 84 (346)
T 3i6i_A 11 GRVLIAGATGFIGQFVATASLDA------HRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEI 84 (346)
T ss_dssp CCEEEECTTSHHHHHHHHHHHHT------TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTC
T ss_pred CeEEEECCCcHHHHHHHHHHHHC------CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCC
Confidence 78999997 99999999999998 99888777764221111 123444321122333 446777 99
Q ss_pred CEEEEccCCc
Q 021114 180 DLVLLLISDA 189 (317)
Q Consensus 180 DvVILavP~~ 189 (317)
|+||.+....
T Consensus 85 d~Vi~~a~~~ 94 (346)
T 3i6i_A 85 DIVVSTVGGE 94 (346)
T ss_dssp CEEEECCCGG
T ss_pred CEEEECCchh
Confidence 9999988764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.059 Score=50.74 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=59.5
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~ADv 181 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++.. .+++..+.+++.|.... +....+..+.+ ...|+
T Consensus 189 ~g-~~VlV~G~G~vG~~a~qla~~~------Ga~Vi~~~-~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 189 AG-DRVVVQGTGGVALFGLQIAKAT------GAEVIVTS-SSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp TT-CEEEEESSBHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEe-cCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceE
Confidence 46 8999999999999999999998 99876554 44455677777775320 11112333322 15788
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++.... +++.+..++++-.++.++
T Consensus 261 vid~~g~~~----~~~~~~~l~~~G~iv~~G 287 (363)
T 3uog_A 261 ILEIAGGAG----LGQSLKAVAPDGRISVIG 287 (363)
T ss_dssp EEEETTSSC----HHHHHHHEEEEEEEEEEC
T ss_pred EEECCChHH----HHHHHHHhhcCCEEEEEe
Confidence 888887432 344445566666665544
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.081 Score=50.93 Aligned_cols=91 Identities=13% Similarity=0.093 Sum_probs=52.2
Q ss_pred CCEEEEEe-ccchHHHHHH-HHHhhhhhhcCCc---eEEEE-ecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 111 INQIGVIG-WGSQGPAQAQ-NLRDSLAEAKSDI---VVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~-~Lr~~~~~~~~G~---~Vivg-~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|+||+|+| .|.+|..+.+ .|.+. ++ .+... .++..+............. ...+.++ ++++|+||.
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~------~~~~v~i~~~~~~s~G~~v~~~~g~~i~~~--~~~~~~~-~~~~DvVf~ 71 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEER------DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ--DAFDLEA-LKALDIIVT 71 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT------GGGGSEEEEEESSSTTSBCCGGGTCCCBCE--ETTCHHH-HHTCSEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcC------CCCeEEEEEEEeCCCCCCccccCCCceEEE--ecCChHH-hcCCCEEEE
Confidence 47999999 9999999999 45444 33 33222 2211111100000111110 0123444 578999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
|+|.....++.+.+.+ .|+ +|+|.++
T Consensus 72 a~g~~~s~~~a~~~~~---~G~k~vVID~ss 99 (367)
T 1t4b_A 72 CQGGDYTNEIYPKLRE---SGWQGYWIDAAS 99 (367)
T ss_dssp CSCHHHHHHHHHHHHH---TTCCCEEEECSS
T ss_pred CCCchhHHHHHHHHHH---CCCCEEEEcCCh
Confidence 9997777677766544 454 7888765
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.29 Score=46.84 Aligned_cols=78 Identities=10% Similarity=0.137 Sum_probs=42.6
Q ss_pred ccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCC----ceEEEEecCCc-ccH-HHHHH--C-C--ceecCCCcCCH
Q 021114 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGS-RSF-AEARA--A-G--FTEENGTLGDI 172 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G----~~Vivg~r~~~-~s~-~~A~~--~-G--~~~~~~~~~~~ 172 (317)
+..... -||+|||. |.+|++++..|.... =+| .++.+.+.... +.. -.+.+ . . ....-....+.
T Consensus 19 ~~s~~~-vKVaViGAaG~IG~~la~~la~~~---l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~~~~ 94 (345)
T 4h7p_A 19 PGSMSA-VKVAVTGAAGQIGYALVPLIARGA---LLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVTADP 94 (345)
T ss_dssp ---CCC-EEEEEESTTSHHHHHHHHHHHHTT---TTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEESCH
T ss_pred CCCCCC-CEEEEECcCcHHHHHHHHHHHhcc---ccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEcCCh
Confidence 345555 69999996 999999999888750 002 13444433221 111 11111 1 1 10000113577
Q ss_pred HhhcCcCCEEEEcc
Q 021114 173 YETISGSDLVLLLI 186 (317)
Q Consensus 173 ~e~v~~ADvVILav 186 (317)
.+++++||+||++-
T Consensus 95 ~~a~~~advVvi~a 108 (345)
T 4h7p_A 95 RVAFDGVAIAIMCG 108 (345)
T ss_dssp HHHTTTCSEEEECC
T ss_pred HHHhCCCCEEEECC
Confidence 88999999999965
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.074 Score=50.16 Aligned_cols=92 Identities=20% Similarity=0.169 Sum_probs=59.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~e~v~~ADvVIL 184 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++..++ ++..+.+. +.|.... -...+ ..++....|+||-
T Consensus 187 ~g-~~VlV~GaG~vG~~~~q~a~~~------Ga~Vi~~~~~-~~~~~~~~~~lGa~~v-~~~~~~~~~~~~~~~~D~vid 257 (366)
T 1yqd_A 187 PG-KHIGIVGLGGLGHVAVKFAKAF------GSKVTVISTS-PSKKEEALKNFGADSF-LVSRDQEQMQAAAGTLDGIID 257 (366)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-GGGHHHHHHTSCCSEE-EETTCHHHHHHTTTCEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHhcCCceE-EeccCHHHHHHhhCCCCEEEE
Confidence 68 9999999999999999999998 9987655544 44455655 6775310 00122 2233456899999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++..... +++.++.|+++..++..+
T Consensus 258 ~~g~~~~---~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 258 TVSAVHP---LLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp CCSSCCC---SHHHHHHEEEEEEEEECC
T ss_pred CCCcHHH---HHHHHHHHhcCCEEEEEc
Confidence 9885432 233345566666655444
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.12 Score=51.50 Aligned_cols=91 Identities=16% Similarity=0.154 Sum_probs=57.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC-CHH-hhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIY-ETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~-~~~-e~v~~ADvVILavP~~ 189 (317)
++|.|||+|.+|..+|+.|.+. |+++++.+...+. .+.+. -+...|.+-. .++ .-++++|.++.+++++
T Consensus 349 ~~viIiG~G~~G~~la~~L~~~------g~~v~vid~d~~~-~~~~~--~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d 419 (565)
T 4gx0_A 349 ELIFIIGHGRIGCAAAAFLDRK------PVPFILIDRQESP-VCNDH--VVVYGDATVGQTLRQAGIDRASGIIVTTNDD 419 (565)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEESSCCS-SCCSS--CEEESCSSSSTHHHHHTTTSCSEEEECCSCH
T ss_pred CCEEEECCCHHHHHHHHHHHHC------CCCEEEEECChHH-HhhcC--CEEEeCCCCHHHHHhcCccccCEEEEECCCc
Confidence 6799999999999999999999 9988766654332 22221 2332121111 122 2378999999999987
Q ss_pred hHHHHHHHHHhcCCCC-cEEEEe
Q 021114 190 AQADNYEKIFSCMKPN-SILGLS 211 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~g-aiVi~~ 211 (317)
...-+.-..+..+.+. .++.-+
T Consensus 420 ~~ni~~~~~ak~l~~~~~iiar~ 442 (565)
T 4gx0_A 420 STNIFLTLACRHLHSHIRIVARA 442 (565)
T ss_dssp HHHHHHHHHHHHHCSSSEEEEEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEEE
Confidence 5443444555555555 444433
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.81 E-value=0.16 Score=47.20 Aligned_cols=93 Identities=17% Similarity=0.047 Sum_probs=62.1
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCC-cCCHHhhcC-----cCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETIS-----GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~-~~~~~e~v~-----~AD 180 (317)
+| ++|.|+|. |.+|..+++.++.. |.+|++..++. +..+.+++.|.... |.. ..+..+.+. ..|
T Consensus 169 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------Ga~V~~~~~~~-~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D 240 (347)
T 2hcy_A 169 AG-HWVAISGAAGGLGSLAVQYAKAM------GYRVLGIDGGE-GKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAH 240 (347)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECST-THHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEE
T ss_pred CC-CEEEEECCCchHHHHHHHHHHHC------CCcEEEEcCCH-HHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCC
Confidence 57 89999999 89999999999998 99876665543 44567777775210 111 124444443 479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||-++... +.+++..+.|+++..++..+
T Consensus 241 ~vi~~~g~~---~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 241 GVINVSVSE---AAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp EEEECSSCH---HHHHHHTTSEEEEEEEEECC
T ss_pred EEEECCCcH---HHHHHHHHHHhcCCEEEEEe
Confidence 999887642 34566677777766665544
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.11 Score=48.23 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=32.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
..+|+| ++|.|||.|..|..-++.|.+. |.+|++...
T Consensus 8 ~~~l~~-k~VLVVGgG~va~rka~~Ll~~------Ga~VtViap 44 (274)
T 1kyq_A 8 AHQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVSP 44 (274)
T ss_dssp EECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEEE
T ss_pred EEEcCC-CEEEEECCcHHHHHHHHHHHhC------CCEEEEEcC
Confidence 467899 9999999999999999999999 998766654
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.77 E-value=0.13 Score=47.91 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=62.8
Q ss_pred CCCCEEEEE-eccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-----CcCCEE
Q 021114 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (317)
Q Consensus 109 ~GikkIGII-G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-----~~ADvV 182 (317)
+| .+|.|+ |.|.+|...++.++.. |.+|+... .+++..+.+++.|....-....+..+.+ ...|+|
T Consensus 150 ~g-~~VlV~gg~G~vG~~a~qla~~~------Ga~Vi~~~-~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv 221 (346)
T 3fbg_A 150 EG-KTLLIINGAGGVGSIATQIAKAY------GLRVITTA-SRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYV 221 (346)
T ss_dssp TT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEC-CSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEe-CCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEE
Confidence 68 999999 7999999999999998 99865544 4455677788877532101112333333 247999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+-++... ..++..+..++++-.++..++
T Consensus 222 ~d~~g~~---~~~~~~~~~l~~~G~iv~~~~ 249 (346)
T 3fbg_A 222 FCTFNTD---MYYDDMIQLVKPRGHIATIVA 249 (346)
T ss_dssp EESSCHH---HHHHHHHHHEEEEEEEEESSC
T ss_pred EECCCch---HHHHHHHHHhccCCEEEEECC
Confidence 9887743 244555666777776665554
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.023 Score=55.63 Aligned_cols=79 Identities=15% Similarity=0.052 Sum_probs=58.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc---eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
.++.|||. |..|..-++.++.. |. +|.+++++. ...|.. . +.+.++|+||-++.
T Consensus 215 ~kV~ViG~~G~vG~~A~~~a~~l------Ga~~~~V~v~D~~~-------~~~g~~--------~-~~i~~aDivIn~vl 272 (394)
T 2qrj_A 215 PTVLIIGALGRCGSGAIDLLHKV------GIPDANILKWDIKE-------TSRGGP--------F-DEIPQADIFINCIY 272 (394)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCGGGEEEECHHH-------HTTCSC--------C-THHHHSSEEEECCC
T ss_pred CeEEEEcCCCHHHHHHHHHHHhC------CCCcCceEEeeccc-------cccCCc--------h-hhHhhCCEEEECcC
Confidence 58999999 99999999999988 97 777665431 111322 1 34669999999999
Q ss_pred CchH-HHHH-HHHHhcC-CCCcEEEEec
Q 021114 188 DAAQ-ADNY-EKIFSCM-KPNSILGLSH 212 (317)
Q Consensus 188 ~~~~-~~vl-~ei~~~l-k~gaiVi~~~ 212 (317)
...- ..++ ++....| |+|++|+|++
T Consensus 273 ig~~aP~Lvt~e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 273 LSKPIAPFTNMEKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp CCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred cCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence 6332 2455 4777889 9999999885
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.047 Score=51.27 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=61.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcC-CHHhhc-CcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLG-DIYETI-SGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~-~~~e~v-~~ADvVILa 185 (317)
+| .+|.|+|.|.+|...++.++.. |.+|+...++ ++..+.+++.|.... +.... +..+.+ ...|+||-+
T Consensus 179 ~g-~~VlV~GaG~vG~~~~qlak~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~ 250 (360)
T 1piw_A 179 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISRS-SRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 250 (360)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEEC
Confidence 57 8999999999999999999998 9986554443 455677777775320 10111 333333 478999999
Q ss_pred cCC--chHHHHHHHHHhcCCCCcEEEEec
Q 021114 186 ISD--AAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 186 vP~--~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+.. .. .+++.++.++++..++..+
T Consensus 251 ~g~~~~~---~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 251 ASSLTDI---DFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp CSCSTTC---CTTTGGGGEEEEEEEEECC
T ss_pred CCCCcHH---HHHHHHHHhcCCCEEEEec
Confidence 976 22 2344556677776666544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.15 Score=47.43 Aligned_cols=94 Identities=17% Similarity=0.205 Sum_probs=61.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc------CcCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI------SGSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v------~~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |-..+++.+.+++..+.+++.|....-....+..+.+ ...|+|
T Consensus 171 ~g-~~vlv~GaG~vG~~a~qla~~~------g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v 243 (345)
T 3jv7_A 171 PG-STAVVIGVGGLGHVGIQILRAV------SAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAV 243 (345)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEE
Confidence 57 8999999999999999998876 5433445555566678888888642100011232222 168999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+-++.... .+++....++++-.++.++
T Consensus 244 ~d~~G~~~---~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 244 FDFVGAQS---TIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp EESSCCHH---HHHHHHHHEEEEEEEEECS
T ss_pred EECCCCHH---HHHHHHHHHhcCCEEEEEC
Confidence 99988643 4555566677777666554
|
| >3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP complex, amino-acid biosynthesis; HET: NAP; 2.20A {Candida albicans} | Back alignment and structure |
|---|
Probab=93.64 E-value=0.17 Score=49.09 Aligned_cols=88 Identities=15% Similarity=0.182 Sum_probs=55.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEE-EE-ecC-CcccHHHH-------------HHCCceecCCCcCCHH
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVK-VG-LRK-GSRSFAEA-------------RAAGFTEENGTLGDIY 173 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vi-vg-~r~-~~~s~~~A-------------~~~G~~~~~~~~~~~~ 173 (317)
.|||||| .|..|..+.+.|.+. . .++. +. .++ ..+..... .+.-+.+ .+.+
T Consensus 20 ~kVaIvGAtG~vG~ell~lL~~h------p~~el~~l~aS~~saGk~~~~~~~~~~~~~~p~~~~~~~v~~-----~~~~ 88 (381)
T 3hsk_A 20 KKAGVLGATGSVGQRFILLLSKH------PEFEIHALGASSRSAGKKYKDAASWKQTETLPETEQDIVVQE-----CKPE 88 (381)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTC------SSEEEEEEEECTTTTTSBHHHHCCCCCSSCCCHHHHTCBCEE-----SSSC
T ss_pred cEEEEECCCChHHHHHHHHHHcC------CCceEEEeeccccccCCCHHHhcccccccccccccccceEEe-----Cchh
Confidence 6899999 799999999988765 3 3443 22 222 12223211 1111211 1222
Q ss_pred hhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+.++++|+||+|+|.....++.+++. +.|+.|+|.++
T Consensus 89 ~~~~~~Dvvf~alp~~~s~~~~~~~~---~~G~~VIDlSa 125 (381)
T 3hsk_A 89 GNFLECDVVFSGLDADVAGDIEKSFV---EAGLAVVSNAK 125 (381)
T ss_dssp TTGGGCSEEEECCCHHHHHHHHHHHH---HTTCEEEECCS
T ss_pred hhcccCCEEEECCChhHHHHHHHHHH---hCCCEEEEcCC
Confidence 14678999999999887777777664 35888998776
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.28 Score=44.84 Aligned_cols=76 Identities=18% Similarity=0.101 Sum_probs=50.4
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH---HH-------CCceecCCCcCC---
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA---RA-------AGFTEENGTLGD--- 171 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A---~~-------~G~~~~~~~~~~--- 171 (317)
..+++ |+|.|.| .|-+|..+++.|.+. |++|++..|......... .. .++..-.....+
T Consensus 21 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 93 (351)
T 3ruf_A 21 LIFSP-KTWLITGVAGFIGSNLLEKLLKL------NQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTT 93 (351)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHH
T ss_pred CCCCC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHH
Confidence 34567 9999999 699999999999999 999877776543222221 11 232211112233
Q ss_pred HHhhcCcCCEEEEccCC
Q 021114 172 IYETISGSDLVLLLISD 188 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~ 188 (317)
+.++++++|+||-+...
T Consensus 94 ~~~~~~~~d~Vih~A~~ 110 (351)
T 3ruf_A 94 CEQVMKGVDHVLHQAAL 110 (351)
T ss_dssp HHHHTTTCSEEEECCCC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 45678899999988753
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.23 Score=47.82 Aligned_cols=97 Identities=19% Similarity=0.122 Sum_probs=54.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec-C-CcccHHHHHHC----Cc----ee-c------CC----
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-K-GSRSFAEARAA----GF----TE-E------NG---- 167 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r-~-~~~s~~~A~~~----G~----~~-~------~~---- 167 (317)
..+.||||+|+|.+|.-+.+.|.+. .+++++...+ . +........+. |. .. + ++
T Consensus 15 ~~~ikVgI~G~G~iGr~llR~l~~~-----p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~ 89 (354)
T 3cps_A 15 YFQGTLGINGFGRIGRLVLRACMER-----NDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVK 89 (354)
T ss_dssp ---CEEEEECCSHHHHHHHHHHHTC-----SSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEE
T ss_pred CcceEEEEECCCHHHHHHHHHHHcC-----CCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEE
Confidence 3336999999999999999998764 1466655454 2 21111111111 10 00 0 00
Q ss_pred --CcCCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 168 --TLGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 168 --~~~~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
...+++++- .++|+||.++|.....+..+ .+++.|+ +|++.++
T Consensus 90 v~~~~dp~~i~w~~~~vDvV~eatg~~~s~e~a~---~~l~~GakkvVId~pa 139 (354)
T 3cps_A 90 VFQAKDPAEIPWGASGAQIVCESTGVFTTEEKAS---LHLKGGAKKVIISAPP 139 (354)
T ss_dssp EECCSCGGGCCHHHHTCCEEEECSSSCCSHHHHG---GGGTTTCSEEEESSCC
T ss_pred EEecCChHHCCcccCCCCEEEECCCchhhHHHHH---HHHHcCCcEEEEeCCC
Confidence 011444432 47999999999877655444 4456677 7777654
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.59 E-value=0.18 Score=45.28 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=48.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc----cHHH---HHHCCceecCCCcCC---HHhhcCcCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAE---ARAAGFTEENGTLGD---IYETISGSD 180 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~----s~~~---A~~~G~~~~~~~~~~---~~e~v~~AD 180 (317)
|+|.|+| .|.+|.++++.|.+. |++|++..|+... ..+. ....|+..-.....+ +.++++++|
T Consensus 5 ~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d 78 (313)
T 1qyd_A 5 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 78 (313)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC------CCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCC
Confidence 7899999 599999999999998 9988776665321 1111 112354321122333 456788999
Q ss_pred EEEEccCCc
Q 021114 181 LVLLLISDA 189 (317)
Q Consensus 181 vVILavP~~ 189 (317)
+||.+....
T Consensus 79 ~vi~~a~~~ 87 (313)
T 1qyd_A 79 VVISALAGG 87 (313)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999987653
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.16 Score=47.82 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=63.0
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCCE
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v-----~~ADv 181 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+...+ +++..+.+++.|.... +....+..+.+ ...|+
T Consensus 163 ~g-~~VlV~Ga~G~iG~~~~q~a~~~------Ga~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 163 EG-KKVLVTAAAGGTGQFAMQLSKKA------KCHVIGTCS-SDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp TT-CEEEETTTTBTTHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CC-CEEEEeCCCcHHHHHHHHHHHhC------CCEEEEEEC-CHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCE
Confidence 57 8999999 799999999999998 998655444 4455667777775320 11112343433 24799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
||-++.. ..++...+.++++..++..+.
T Consensus 235 vid~~g~----~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 235 VYESVGG----AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EEECSCT----HHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCH----HHHHHHHHHHhcCCEEEEEeC
Confidence 9999875 355566677777766665554
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.21 Score=49.83 Aligned_cols=75 Identities=21% Similarity=0.091 Sum_probs=50.2
Q ss_pred cccCCCCEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
-.+++ ++|-|||.|-.|.+ +|+.|++. |++|.+.+.+.. ...+..++.|+....+ .+.+++..++|+||
T Consensus 15 ~~~~~-~~i~~iGiGg~Gms~lA~~l~~~------G~~V~~sD~~~~~~~~~~L~~~gi~~~~G--~~~~~~~~~~d~vV 85 (524)
T 3hn7_A 15 LYFQG-MHIHILGICGTFMGSLALLARAL------GHTVTGSDANIYPPMSTQLEQAGVTIEEG--YLIAHLQPAPDLVV 85 (524)
T ss_dssp ----C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCCCTTHHHHHHHTTCEEEES--CCGGGGCSCCSEEE
T ss_pred eeecC-CEEEEEEecHhhHHHHHHHHHhC------CCEEEEECCCCCcHHHHHHHHCCCEEECC--CCHHHcCCCCCEEE
Confidence 34567 99999999999997 79889999 999876665532 2334556678764211 24455556899999
Q ss_pred Ec--cCCc
Q 021114 184 LL--ISDA 189 (317)
Q Consensus 184 La--vP~~ 189 (317)
+. +|++
T Consensus 86 ~Spgi~~~ 93 (524)
T 3hn7_A 86 VGNAMKRG 93 (524)
T ss_dssp ECTTCCTT
T ss_pred ECCCcCCC
Confidence 84 5543
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.2 Score=50.11 Aligned_cols=93 Identities=15% Similarity=0.138 Sum_probs=58.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCcccHHHHHHCCceec--CCCcCCH----HhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEE--NGTLGDI----YETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~--~~~~~~~----~e~v~~ADvV 182 (317)
++|.|||+|.||..++..|.+. .++ +|++.+..... .+.....|+... +-+..+. ++++++.|+|
T Consensus 14 ~rVlIIGaGgVG~~va~lla~~-----~dv~~~~I~vaD~~~~~-~~~~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvV 87 (480)
T 2ph5_A 14 NRFVILGFGCVGQALMPLIFEK-----FDIKPSQVTIIAAEGTK-VDVAQQYGVSFKLQQITPQNYLEVIGSTLEENDFL 87 (480)
T ss_dssp SCEEEECCSHHHHHHHHHHHHH-----BCCCGGGEEEEESSCCS-CCHHHHHTCEEEECCCCTTTHHHHTGGGCCTTCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhC-----CCCceeEEEEeccchhh-hhHHhhcCCceeEEeccchhHHHHHHHHhcCCCEE
Confidence 5799999999999999999876 134 46666543322 122333343211 1112222 3466677999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|.+.++.....+++.... .|...+|.+.
T Consensus 88 IN~s~~~~~l~Im~acle---aGv~YlDTa~ 115 (480)
T 2ph5_A 88 IDVSIGISSLALIILCNQ---KGALYINAAT 115 (480)
T ss_dssp EECCSSSCHHHHHHHHHH---HTCEEEESSC
T ss_pred EECCccccCHHHHHHHHH---cCCCEEECCC
Confidence 999988877777664433 4777887764
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=93.55 E-value=0.3 Score=43.72 Aligned_cols=71 Identities=23% Similarity=0.303 Sum_probs=48.1
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccH-HHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSF-AEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
|+|.|.|. |.+|.++++.|.+. | ++|++..|+..+.. +.....|+..-.....+ +.++++++|+||.+
T Consensus 6 ~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~ 79 (299)
T 2wm3_A 6 KLVVVFGGTGAQGGSVARTLLED------GTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIV 79 (299)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------CSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCchHHHHHHHHHHhc------CCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEe
Confidence 78999996 99999999999998 8 88877776643321 12223454221112333 44678899999998
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
...
T Consensus 80 a~~ 82 (299)
T 2wm3_A 80 TNY 82 (299)
T ss_dssp CCH
T ss_pred CCC
Confidence 753
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=93.52 E-value=0.17 Score=43.75 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=48.8
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHH-HCCceecCC-CcCCHHhhcCcCCEE
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR-AAGFTEENG-TLGDIYETISGSDLV 182 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~-~~G~~~~~~-~~~~~~e~v~~ADvV 182 (317)
++| |+|.|.| .|-+|.++++.|.+. |+ +|++..|+..+..+... ..-+...|- ...++++++++.|+|
T Consensus 16 m~~-~~vlVtGasg~iG~~l~~~L~~~------G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 88 (242)
T 2bka_A 16 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 88 (242)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred hcC-CeEEEECCCcHHHHHHHHHHHcC------CCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEE
Confidence 568 9999999 699999999999999 98 88777765432111100 111111010 012455678899999
Q ss_pred EEccCCc
Q 021114 183 LLLISDA 189 (317)
Q Consensus 183 ILavP~~ 189 (317)
|.+....
T Consensus 89 i~~ag~~ 95 (242)
T 2bka_A 89 FCCLGTT 95 (242)
T ss_dssp EECCCCC
T ss_pred EECCCcc
Confidence 9987653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.12 Score=47.64 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+...+ +++..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 140 PG-EIILFHAAAGGVGSLACQWAKAL------GAKLIGTVS-SPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEES-SHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEEcCCcHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCce
Confidence 57 8999999 899999999999999 998765554 3455667777774210 11112333322 2578
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++.. +.++...+.++++..++..+
T Consensus 212 vvid~~g~----~~~~~~~~~l~~~G~iv~~g 239 (325)
T 3jyn_A 212 VVYDGVGQ----DTWLTSLDSVAPRGLVVSFG 239 (325)
T ss_dssp EEEESSCG----GGHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHhcCCCEEEEEe
Confidence 88888775 24455666777777666554
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.49 E-value=0.1 Score=48.71 Aligned_cols=91 Identities=15% Similarity=0.180 Sum_probs=60.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+|. |.+|...++.++.. |.+|+...++ .+..+.+++.|.... +.. .+..+.+ ...|
T Consensus 159 ~g-~~VlV~Gasg~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~ga~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 159 AG-ETVLVLGAAGGIGTAAIQIAKGM------GAKVIAVVNR-TAATEFVKSVGADIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCcEEecCc-hhHHHHHHHHhCCCCce
Confidence 57 89999998 99999999999998 9987655544 455677777775321 111 2333332 1589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++... .+++....++++-.++.++
T Consensus 230 vvid~~g~~----~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 230 MVVDPIGGP----AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEEESCC------CHHHHHHTEEEEEEEEEC-
T ss_pred EEEECCchh----HHHHHHHhhcCCCEEEEEE
Confidence 999888753 3555666777777666554
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.14 Score=45.94 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=33.3
Q ss_pred ccccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 105 PDAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+..|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 1 M~~l~g-K~alVTGaa~~~GIG~aiA~~la~~------Ga~Vvi~~r~~ 42 (256)
T 4fs3_A 1 MLNLEN-KTYVIMGIANKRSIAFGVAKVLDQL------GAKLVFTYRKE 42 (256)
T ss_dssp CCCCTT-CEEEEECCCSTTCHHHHHHHHHHHT------TCEEEEEESSG
T ss_pred CcCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 357899 999999975 4999999999999 99998877764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.26 Score=47.59 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=62.2
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCC---------------
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--------------- 171 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~--------------- 171 (317)
+| ++|.|+|. |.+|...++.++.. |.+|++..+ +++..+.+++.|.... +....+
T Consensus 220 ~g-~~VlV~GasG~iG~~a~qla~~~------Ga~vi~~~~-~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~ 291 (447)
T 4a0s_A 220 QG-DIVLIWGASGGLGSYAIQFVKNG------GGIPVAVVS-SAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVET 291 (447)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHH
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeC-CHHHHHHHHhcCCCEEEecccccccccccccccccchh
Confidence 56 89999998 99999999999998 998766654 4555677888886320 000000
Q ss_pred ----HHh---h-cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 172 ----IYE---T-ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 172 ----~~e---~-v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.++ . -...|+||-++.. ..++.....++++-.++.++
T Consensus 292 ~~~~~~~v~~~~g~g~Dvvid~~G~----~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 292 GRKLAKLVVEKAGREPDIVFEHTGR----VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHHSSCCSEEEECSCH----HHHHHHHHHSCTTCEEEESC
T ss_pred hhHHHHHHHHHhCCCceEEEECCCc----hHHHHHHHHHhcCCEEEEEe
Confidence 011 1 1358999998875 24566667788887777655
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.024 Score=51.96 Aligned_cols=70 Identities=26% Similarity=0.162 Sum_probs=43.9
Q ss_pred cccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcC
Q 021114 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGS 179 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~A 179 (317)
+...+++ |+|.|.|. |-+|..+++.|.+. |++|++..|.... ...-+.. ....+ +.++++++
T Consensus 13 ~~~~~~~-~~vlVtGatG~iG~~l~~~L~~~------G~~V~~~~r~~~~-----~~~~~~~--~Dl~d~~~~~~~~~~~ 78 (347)
T 4id9_A 13 GLVPRGS-HMILVTGSAGRVGRAVVAALRTQ------GRTVRGFDLRPSG-----TGGEEVV--GSLEDGQALSDAIMGV 78 (347)
T ss_dssp ---------CEEEETTTSHHHHHHHHHHHHT------TCCEEEEESSCCS-----SCCSEEE--SCTTCHHHHHHHHTTC
T ss_pred cccccCC-CEEEEECCCChHHHHHHHHHHhC------CCEEEEEeCCCCC-----CCccEEe--cCcCCHHHHHHHHhCC
Confidence 4577888 99999996 99999999999999 9998777665432 1111221 11223 45678899
Q ss_pred CEEEEccC
Q 021114 180 DLVLLLIS 187 (317)
Q Consensus 180 DvVILavP 187 (317)
|+||-+..
T Consensus 79 d~vih~A~ 86 (347)
T 4id9_A 79 SAVLHLGA 86 (347)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 99998754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.57 Score=39.58 Aligned_cols=92 Identities=14% Similarity=0.061 Sum_probs=58.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCc---eecCCCcCCHHhh---cCc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGF---TEENGTLGDIYET---ISG 178 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~---~~~~~~~~~~~e~---v~~ 178 (317)
+| .+|.-||+|. |. ++..+.+. +.+.++ ++.+.++...+.+++ .|+ ... ..+..+. ...
T Consensus 40 ~~-~~vLDiG~G~-G~-~~~~la~~----~~~~~v-~~vD~s~~~~~~a~~~~~~~~~~~v~~~---~~d~~~~~~~~~~ 108 (204)
T 3e05_A 40 DD-LVMWDIGAGS-AS-VSIEASNL----MPNGRI-FALERNPQYLGFIRDNLKKFVARNVTLV---EAFAPEGLDDLPD 108 (204)
T ss_dssp TT-CEEEEETCTT-CH-HHHHHHHH----CTTSEE-EEEECCHHHHHHHHHHHHHHTCTTEEEE---ECCTTTTCTTSCC
T ss_pred CC-CEEEEECCCC-CH-HHHHHHHH----CCCCEE-EEEeCCHHHHHHHHHHHHHhCCCcEEEE---eCChhhhhhcCCC
Confidence 56 8999999997 43 44445444 002454 567766655555543 222 110 1233222 356
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
.|+|++..+.....++++++...||||..+++.
T Consensus 109 ~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 141 (204)
T 3e05_A 109 PDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLN 141 (204)
T ss_dssp CSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEE
Confidence 899999887776677999999999998887644
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.36 E-value=0.11 Score=48.03 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=63.2
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+...+ +++..+.+++.|.... +....+..+.+ ...|
T Consensus 148 ~g-~~vlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~-~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 148 KG-DYVLLFAAAGGVGLILNQLLKMK------GAHTIAVAS-TDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEES-SHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeC-CHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCce
Confidence 57 9999999 899999999999998 998765554 4455677888885310 11112333322 2479
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+-++.. +.++...+.++++-.++..+.
T Consensus 220 ~vid~~g~----~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 220 ASFDSVGK----DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp EEEECCGG----GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCh----HHHHHHHHHhccCCEEEEEcC
Confidence 99998875 245555667777777766553
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.2 Score=47.72 Aligned_cols=70 Identities=14% Similarity=0.075 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCCc------ccHHHHH----H--CCceecCCCcCCH
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS------RSFAEAR----A--AGFTEENGTLGDI 172 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~------~s~~~A~----~--~G~~~~~~~~~~~ 172 (317)
.|+| .+|++||=+ ++..|++..+... |+++.+.....- ...+.++ + .|... ....++
T Consensus 158 ~l~g-l~va~vGD~~~~va~Sl~~~~~~~------G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v--~~~~d~ 228 (328)
T 3grf_A 158 GFKG-IKFAYCGDSMNNVTYDLMRGCALL------GMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSI--KIFHDC 228 (328)
T ss_dssp TGGG-CCEEEESCCSSHHHHHHHHHHHHH------TCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEE--EEESSH
T ss_pred ccCC-cEEEEeCCCCcchHHHHHHHHHHc------CCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeE--EEEcCH
Confidence 6889 999999975 8899999999888 998876644321 1222232 3 45321 015699
Q ss_pred HhhcCcCCEEEEc
Q 021114 173 YETISGSDLVLLL 185 (317)
Q Consensus 173 ~e~v~~ADvVILa 185 (317)
+|+++++|+|..-
T Consensus 229 ~eav~~aDvvytd 241 (328)
T 3grf_A 229 KKGCEGVDVVYTD 241 (328)
T ss_dssp HHHHTTCSEEEEC
T ss_pred HHHhcCCCEEEec
Confidence 9999999999874
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.32 Score=44.61 Aligned_cols=76 Identities=18% Similarity=0.086 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCccc---HHHHH-------HCCceecCCCcCC---
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEAR-------AAGFTEENGTLGD--- 171 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~-------~~G~~~~~~~~~~--- 171 (317)
..+++ |+|.|.|. |-+|..+++.|.+. |++|++..|..... .+... ..++..-.....+
T Consensus 23 ~~~~~-~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 95 (352)
T 1sb8_A 23 LPAQP-KVWLITGVAGFIGSNLLETLLKL------DQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDD 95 (352)
T ss_dssp HHHSC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHH
T ss_pred cCccC-CeEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHH
Confidence 44678 99999996 99999999999999 99887776654321 11111 1233211111233
Q ss_pred HHhhcCcCCEEEEccCC
Q 021114 172 IYETISGSDLVLLLISD 188 (317)
Q Consensus 172 ~~e~v~~ADvVILavP~ 188 (317)
+.+++++.|+||.+...
T Consensus 96 ~~~~~~~~d~vih~A~~ 112 (352)
T 1sb8_A 96 CNNACAGVDYVLHQAAL 112 (352)
T ss_dssp HHHHHTTCSEEEECCSC
T ss_pred HHHHhcCCCEEEECCcc
Confidence 44678899999988754
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.2 Score=48.48 Aligned_cols=70 Identities=13% Similarity=0.016 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecCC------cccHH----HHHHCCceecCCCcCCHHh
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFA----EARAAGFTEENGTLGDIYE 174 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~------~~s~~----~A~~~G~~~~~~~~~~~~e 174 (317)
.|+| .||++||=+ ++..|++..+... |+++.+...+. +.-.+ .+.+.|...+ ...+++|
T Consensus 177 ~l~g-lkva~vGD~~nnva~Sl~~~~~~l------G~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~--~~~d~~e 247 (365)
T 4amu_A 177 NLKN-KKIVFIGDYKNNVGVSTMIGAAFN------GMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLR--FSTDKIL 247 (365)
T ss_dssp SCTT-CEEEEESSTTSHHHHHHHHHHHHT------TCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEE--EESCHHH
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHHc------CCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEE--EECCHHH
Confidence 4789 999999987 7889999999888 99887664321 11112 2344553210 1569999
Q ss_pred hcCcCCEEEEc
Q 021114 175 TISGSDLVLLL 185 (317)
Q Consensus 175 ~v~~ADvVILa 185 (317)
++++||+|..-
T Consensus 248 av~~aDVVytd 258 (365)
T 4amu_A 248 AAQDADVIYTD 258 (365)
T ss_dssp HTTTCSEEEEC
T ss_pred HhcCCCEEEec
Confidence 99999999984
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=93.27 E-value=0.043 Score=52.14 Aligned_cols=67 Identities=22% Similarity=0.192 Sum_probs=43.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCC---HHhhcCcCCEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvV 182 (317)
.+.| ++|+|||.|.+|..+++.+++. |+++++.+.... .....+ ..+.. ....| +.++++++|+|
T Consensus 9 ~~~~-~~IlIlG~G~lg~~la~aa~~l------G~~viv~d~~~~~p~~~~a--d~~~~--~~~~d~~~l~~~~~~~dvi 77 (377)
T 3orq_A 9 LKFG-ATIGIIGGGQLGKMMAQSAQKM------GYKVVVLDPSEDCPCRYVA--HEFIQ--AKYDDEKALNQLGQKCDVI 77 (377)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESCTTCTTGGGS--SEEEE--CCTTCHHHHHHHHHHCSEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECCCCChhhhhC--CEEEE--CCCCCHHHHHHHHHhCCcc
Confidence 3567 9999999999999999999999 998876654321 111111 11221 11223 44567788987
Q ss_pred EE
Q 021114 183 LL 184 (317)
Q Consensus 183 IL 184 (317)
..
T Consensus 78 ~~ 79 (377)
T 3orq_A 78 TY 79 (377)
T ss_dssp EE
T ss_pred ee
Confidence 65
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.26 E-value=0.54 Score=44.17 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=62.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHh-hhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-----cCCE
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-----GSDL 181 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-----~ADv 181 (317)
+| .+|.|+| .|.+|...++.++. . |.+|+ +.+.+++..+.+++.|...--....+..+.+. ..|+
T Consensus 171 ~g-~~VlV~Ga~G~vG~~a~qlak~~~------g~~Vi-~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dv 242 (363)
T 4dvj_A 171 AA-PAILIVGGAGGVGSIAVQIARQRT------DLTVI-ATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAF 242 (363)
T ss_dssp SE-EEEEEESTTSHHHHHHHHHHHHHC------CSEEE-EECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHhc------CCEEE-EEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceE
Confidence 57 8999999 99999999999987 5 67765 44444556778888886321011123333332 5799
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++... ..+++....++++-.++.++
T Consensus 243 vid~~g~~---~~~~~~~~~l~~~G~iv~~g 270 (363)
T 4dvj_A 243 VFSTTHTD---KHAAEIADLIAPQGRFCLID 270 (363)
T ss_dssp EEECSCHH---HHHHHHHHHSCTTCEEEECS
T ss_pred EEECCCch---hhHHHHHHHhcCCCEEEEEC
Confidence 99887743 34556667788877776553
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.11 Score=48.03 Aligned_cols=93 Identities=15% Similarity=0.154 Sum_probs=63.0
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceec-CCCcCCHHhhcC-----cCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEE-NGTLGDIYETIS-----GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~-~~~~~~~~e~v~-----~AD 180 (317)
+| ++|.|+|. |.+|...++.++.. |.+|+...++ ++..+.+ ++.|.... +....+..+.+. ..|
T Consensus 149 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d 220 (336)
T 4b7c_A 149 NG-ETVVISGAAGAVGSVAGQIARLK------GCRVVGIAGG-AEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGID 220 (336)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCce
Confidence 56 89999998 99999999999998 9987655544 4445566 66775310 111123333332 489
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+-++.. +.++...+.++++-.++.++.
T Consensus 221 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 221 VFFDNVGG----EILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCc----chHHHHHHHHhhCCEEEEEee
Confidence 99988773 356677778888777776554
|
| >3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.18 Score=48.15 Aligned_cols=87 Identities=21% Similarity=0.201 Sum_probs=53.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCc--ccHHHHHHCCceecCCCcCC-HHhhcCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGS--RSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~-~~e~v~~ADvVIL 184 (317)
++|+||| .|..|.-+.+.|.+. .+ ++.....+.+ +... -.|... ...+ ..+.++++|+||+
T Consensus 2 ~~VaIvGatG~vG~el~~lL~~h------~fp~~el~~~~s~~~aG~~~~---~~~~~~---~~~~~~~~~~~~~Dvvf~ 69 (344)
T 3tz6_A 2 LSIGIVGATGQVGQVMRTLLDER------DFPASAVRFFASARSQGRKLA---FRGQEI---EVEDAETADPSGLDIALF 69 (344)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TCCEEEEEEEECTTTSSCEEE---ETTEEE---EEEETTTSCCTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCceEEEEEECcccCCCcee---ecCCce---EEEeCCHHHhccCCEEEE
Confidence 7899999 899999999988775 43 2322221111 1110 001100 0111 1234678999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
|+|.....+..+++. +.|+.|+|.++
T Consensus 70 a~~~~~s~~~a~~~~---~~G~~vID~Sa 95 (344)
T 3tz6_A 70 SAGSAMSKVQAPRFA---AAGVTVIDNSS 95 (344)
T ss_dssp CSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCC
Confidence 999877777776654 45888998776
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.11 Score=50.85 Aligned_cols=93 Identities=17% Similarity=0.185 Sum_probs=64.0
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC-------c--cc--HHHHHHCCceecCCCcCCHHh
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------S--RS--FAEARAAGFTEENGTLGDIYE 174 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~-------~--~s--~~~A~~~G~~~~~~~~~~~~e 174 (317)
.++. .||.|+|.|.-|.++|+.|... |. +|++.++++ . .. ...+..... .....+++|
T Consensus 185 ~l~d-~kVVi~GAGaAG~~iA~ll~~~------Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~---~~~~~~L~e 254 (398)
T 2a9f_A 185 SLDE-VSIVVNGGGSAGLSITRKLLAA------GATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR---EFKSGTLED 254 (398)
T ss_dssp CTTS-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC---TTCCCSCSH
T ss_pred CCCc-cEEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcccCCccccchHHHHHHhhccCc---ccchhhHHH
Confidence 4555 7999999999999999999998 88 777776652 1 01 112222110 011357999
Q ss_pred hcCcCCEEEEccCCchHHHHH-HHHHhcCCCCcEEEEecC
Q 021114 175 TISGSDLVLLLISDAAQADNY-EKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 175 ~v~~ADvVILavP~~~~~~vl-~ei~~~lk~gaiVi~~~G 213 (317)
+++++|++|=+..+ .++ +++...|+++.+|...+-
T Consensus 255 av~~ADV~IG~Sap----gl~T~EmVk~Ma~~pIIfalsN 290 (398)
T 2a9f_A 255 ALEGADIFIGVSAP----GVLKAEWISKMAARPVIFAMAN 290 (398)
T ss_dssp HHHTTCSEEECCST----TCCCHHHHHTSCSSCEEEECCS
T ss_pred HhccCCEEEecCCC----CCCCHHHHHhhCCCCEEEECCC
Confidence 99999998877543 334 367778999999997764
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.15 E-value=0.11 Score=47.84 Aligned_cols=94 Identities=17% Similarity=0.140 Sum_probs=66.5
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCC-HHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~-~~e~v~~ADvVIL 184 (317)
-+| .+|.|+| .|.+|...++.++.. |.+|+... +. +..+.+++.|.... +....+ ..+.+...|+|+-
T Consensus 151 ~~g-~~vlV~Ga~G~vG~~a~q~a~~~------Ga~vi~~~-~~-~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d 221 (321)
T 3tqh_A 151 KQG-DVVLIHAGAGGVGHLAIQLAKQK------GTTVITTA-SK-RNHAFLKALGAEQCINYHEEDFLLAISTPVDAVID 221 (321)
T ss_dssp CTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEE-CH-HHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEE
T ss_pred CCC-CEEEEEcCCcHHHHHHHHHHHHc------CCEEEEEe-cc-chHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEE
Confidence 357 8999997 999999999999998 99876554 32 33677888886420 112234 6677788999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
++.... +++.+..++++-.++..+..
T Consensus 222 ~~g~~~----~~~~~~~l~~~G~iv~~g~~ 247 (321)
T 3tqh_A 222 LVGGDV----GIQSIDCLKETGCIVSVPTI 247 (321)
T ss_dssp SSCHHH----HHHHGGGEEEEEEEEECCST
T ss_pred CCCcHH----HHHHHHhccCCCEEEEeCCC
Confidence 987532 25667778887777766543
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.06 Score=51.13 Aligned_cols=88 Identities=16% Similarity=0.091 Sum_probs=51.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecC-Cc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRK-GS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~-~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+||+|+| .|.+|..+.+.|.+. ++ +++...++ .. +... -.|.... ....+. +.+.++|+|++|
T Consensus 7 ~kV~IiGAtG~iG~~llr~L~~~------~~~~~elv~i~s~~~~g~~~~---~~g~~i~-~~~~~~-~~~~~~DvV~~a 75 (340)
T 2hjs_A 7 LNVAVVGATGSVGEALVGLLDER------DFPLHRLHLLASAESAGQRMG---FAESSLR-VGDVDS-FDFSSVGLAFFA 75 (340)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCCSCEEEEECTTTTTCEEE---ETTEEEE-CEEGGG-CCGGGCSEEEEC
T ss_pred cEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEEecCCCCCCccc---cCCcceE-EecCCH-HHhcCCCEEEEc
Confidence 6899999 899999999998854 33 44333322 11 1000 0111100 000122 235789999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|.....+..+... +.|+.++|.++
T Consensus 76 ~g~~~s~~~a~~~~---~aG~kvId~Sa 100 (340)
T 2hjs_A 76 AAAEVSRAHAERAR---AAGCSVIDLSG 100 (340)
T ss_dssp SCHHHHHHHHHHHH---HTTCEEEETTC
T ss_pred CCcHHHHHHHHHHH---HCCCEEEEeCC
Confidence 99877666666544 34777777665
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.8 Score=43.05 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=63.5
Q ss_pred cCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCC
Q 021114 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSD 180 (317)
Q Consensus 108 l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~AD 180 (317)
-+| .+|.|+|. |.+|...++.++.. |.+|+.. . +++..+.+++.|...- +....+..+.+. ..|
T Consensus 163 ~~g-~~VlV~Ga~G~vG~~a~qla~~~------Ga~Vi~~-~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d 233 (371)
T 3gqv_A 163 SKP-VYVLVYGGSTATATVTMQMLRLS------GYIPIAT-C-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLR 233 (371)
T ss_dssp SSC-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEE-E-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCC
T ss_pred CCC-cEEEEECCCcHHHHHHHHHHHHC------CCEEEEE-e-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCcc
Confidence 468 99999999 89999999999998 9987544 3 3566788899986320 111223333332 389
Q ss_pred EEEEccCCchHHHHHHHHHhcC-CCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCM-KPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~l-k~gaiVi~~~G 213 (317)
+|+-++.... .++.....+ +++-.++.++.
T Consensus 234 ~v~d~~g~~~---~~~~~~~~l~~~~G~iv~~g~ 264 (371)
T 3gqv_A 234 YALDCITNVE---STTFCFAAIGRAGGHYVSLNP 264 (371)
T ss_dssp EEEESSCSHH---HHHHHHHHSCTTCEEEEESSC
T ss_pred EEEECCCchH---HHHHHHHHhhcCCCEEEEEec
Confidence 9999988643 344445556 56666665553
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.22 Score=45.83 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=60.7
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc-CCHHhhcC-----cCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-GDIYETIS-----GSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~~~~e~v~-----~AD 180 (317)
+| +++.|+|. |.+|...++.++.. |.+|++..++ ++..+.+++.|.... |... .+..+.+. ..|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~~~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d 216 (333)
T 1v3u_A 145 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 216 (333)
T ss_dssp SS-CEEEEESTTBHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEecCCCcHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCe
Confidence 57 89999997 99999999999998 9987665544 444556666664210 1111 23333332 478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||-++.. ..+++....++++..++..+
T Consensus 217 ~vi~~~g~----~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 217 CYFDNVGG----EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred EEEECCCh----HHHHHHHHHHhcCCEEEEEe
Confidence 88888764 23566667777776666554
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.49 Score=47.09 Aligned_cols=90 Identities=11% Similarity=0.108 Sum_probs=56.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHh----hcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYE----TISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e----~v~~ADvVILav 186 (317)
++|.|+|+|..|..+++.|.+. |+++++.+ .+++..+.+.+. |+..-.+...+.+. -+++||.|++ +
T Consensus 128 ~hviI~G~g~~g~~la~~L~~~------~~~vvvid-~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~-t 199 (565)
T 4gx0_A 128 GHILIFGIDPITRTLIRKLESR------NHLFVVVT-DNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA-N 199 (565)
T ss_dssp SCEEEESCCHHHHHHHHHTTTT------TCCEEEEE-SCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE-C
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE-e
Confidence 6799999999999999999998 98876554 445556667666 75432222333332 2678999998 5
Q ss_pred CCchHHHHHHHHHhcCCCCcEEE
Q 021114 187 SDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi 209 (317)
+++...-.+-..+..+..-.++.
T Consensus 200 ~~D~~n~~~~~~ar~~~~~~iia 222 (565)
T 4gx0_A 200 LSDPDNANLCLTVRSLCQTPIIA 222 (565)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEE
T ss_pred CCcHHHHHHHHHHHHhcCceEEE
Confidence 65544322223344444333443
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=93.06 E-value=0.14 Score=46.24 Aligned_cols=69 Identities=19% Similarity=0.207 Sum_probs=45.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
|+|.|.| .|.+|..+++.|.+. |++|++..|. ....+ ....-+...|-...++.++++++|+||.+...
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~-~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~d~Vih~a~~ 72 (311)
T 3m2p_A 3 LKIAVTGGTGFLGQYVVESIKND------GNTPIILTRS-IGNKA-INDYEYRVSDYTLEDLINQLNDVDAVVHLAAT 72 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC-CC------CCEEEECCCCHHHHHHHTTTCSEEEECCCC
T ss_pred CEEEEECCCcHHHHHHHHHHHhC------CCEEEEEeCC-CCccc-CCceEEEEccccHHHHHHhhcCCCEEEEcccc
Confidence 7999999 799999999999999 9998777766 32222 11111221111112355678899999987643
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.052 Score=52.43 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=53.3
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEe-cCC-cccHHHHHHCC--ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGL-RKG-SRSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~-r~~-~~s~~~A~~~G--~~~~~~~~~~~~e~v~~ADvVI 183 (317)
++|+||| .|..|.-+.+.|.+. ++ ++.... ++. .+... -.| ...+ ..+ .+.++++|+||
T Consensus 3 ~kVaIvGATG~vG~eLlrlL~~~------~~p~~el~~~as~~saG~~~~---~~~~~~~~~---~~~-~~~~~~~Dvvf 69 (366)
T 3pwk_A 3 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLASARSAGKSLK---FKDQDITIE---ETT-ETAFEGVDIAL 69 (366)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CCCEEEEEEEECTTTTTCEEE---ETTEEEEEE---ECC-TTTTTTCSEEE
T ss_pred cEEEEECCCChHHHHHHHHHhcC------CCCcEEEEEEEccccCCCcce---ecCCCceEe---eCC-HHHhcCCCEEE
Confidence 6899999 899999999988876 54 222222 111 11110 011 1110 012 23467899999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+|.....+...++. +.|+.++|.++
T Consensus 70 ~a~~~~~s~~~a~~~~---~~G~~vIDlSa 96 (366)
T 3pwk_A 70 FSAGSSTSAKYAPYAV---KAGVVVVDNTS 96 (366)
T ss_dssp ECSCHHHHHHHHHHHH---HTTCEEEECSS
T ss_pred ECCChHhHHHHHHHHH---HCCCEEEEcCC
Confidence 9999777666666654 45888898776
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.02 E-value=0.098 Score=49.12 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=52.9
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
..|+| .+|++||= +++..|++..+... |+++.+...+.-.... ..+.|+.. ..+++|+++++|+|
T Consensus 142 g~l~g-l~va~vGDl~~~rva~Sl~~~~~~~------g~~v~~~~P~~~~p~~-~~~~g~~~----~~d~~eav~~aDvv 209 (291)
T 3d6n_B 142 GEVKD-LRVLYVGDIKHSRVFRSGAPLLNMF------GAKIGVCGPKTLIPRD-VEVFKVDV----FDDVDKGIDWADVV 209 (291)
T ss_dssp SCCTT-CEEEEESCCTTCHHHHHHHHHHHHT------TCEEEEESCGGGSCTT-GGGGCEEE----ESSHHHHHHHCSEE
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHHC------CCEEEEECCchhCCch-HHHCCCEE----EcCHHHHhCCCCEE
Confidence 45889 99999997 89999999999998 9988766543210000 11346543 57999999999999
Q ss_pred EEccCCch
Q 021114 183 LLLISDAA 190 (317)
Q Consensus 183 ILavP~~~ 190 (317)
.. +-.+.
T Consensus 210 y~-~~~q~ 216 (291)
T 3d6n_B 210 IW-LRLQK 216 (291)
T ss_dssp EE-CCCCT
T ss_pred EE-eCccc
Confidence 99 66543
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.13 Score=47.10 Aligned_cols=77 Identities=14% Similarity=0.067 Sum_probs=50.8
Q ss_pred cccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhcC-
Q 021114 104 LPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETIS- 177 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~e~v~- 177 (317)
++..++| |+|.|.|. |-+|..+++.|.+. |++|++..|......+...+ .++..-.....+ ++++++
T Consensus 14 ~~~~~~~-~~vlVTGasG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~ 86 (330)
T 2pzm_A 14 LVPRGSH-MRILITGGAGCLGSNLIEHWLPQ------GHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDS 86 (330)
T ss_dssp CCSTTTC-CEEEEETTTSHHHHHHHHHHGGG------TCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHH
T ss_pred CcccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhh
Confidence 5789999 99999996 99999999999999 99987776643221100000 122100111333 445677
Q ss_pred -cCCEEEEccC
Q 021114 178 -GSDLVLLLIS 187 (317)
Q Consensus 178 -~ADvVILavP 187 (317)
+.|+||.+..
T Consensus 87 ~~~D~vih~A~ 97 (330)
T 2pzm_A 87 FKPTHVVHSAA 97 (330)
T ss_dssp HCCSEEEECCC
T ss_pred cCCCEEEECCc
Confidence 8999998764
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.26 Score=49.07 Aligned_cols=92 Identities=12% Similarity=0.239 Sum_probs=65.6
Q ss_pred ccCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v 176 (317)
.++| ++|+|.|+- +-...+++.|.+. |.+|.+++.. .... .++. ...++++++
T Consensus 350 ~~~~-~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~------g~~V~~~DP~-~~~~-----~~~~----~~~~~~~~~ 412 (478)
T 3g79_A 350 KMDG-SKVAMLGWAFIKDSDDARNTPSEPYRDLCLKA------GASVMVHDPY-VVNY-----PGVE----ISDNLEEVV 412 (478)
T ss_dssp CSTT-CEEEEECSSSSTTCSCCTTCTHHHHHHHHHHH------TCEEEEECSS-CCCB-----TTBC----EESCHHHHH
T ss_pred CCCC-CEEEEEeeecCCCCcchhcCcHHHHHHHHHHC------CCEEEEECCC-cccc-----cCcc----eecCHHHHH
Confidence 5789 999999963 3367788888888 9987665432 2211 1111 135889999
Q ss_pred CcCCEEEEccCCchHHH-HHHHHHhcCC-CCcEEEEecCch
Q 021114 177 SGSDLVLLLISDAAQAD-NYEKIFSCMK-PNSILGLSHGFL 215 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~-vl~ei~~~lk-~gaiVi~~~Gv~ 215 (317)
+++|+|+++|.-.+..+ -++++...|+ ++.+|+|..++.
T Consensus 413 ~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~~i~D~rn~~ 453 (478)
T 3g79_A 413 RNADAIVVLAGHSAYSSLKADWAKKVSAKANPVIIDGRNVI 453 (478)
T ss_dssp TTCSEEEECSCCHHHHSCCHHHHHHHHCCSSCEEEESSSCS
T ss_pred hcCCEEEEecCCHHHHhhhHHHHHHHhccCCCEEEECCCCC
Confidence 99999999999877654 2456777787 478999998863
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=92.95 E-value=0.12 Score=47.42 Aligned_cols=89 Identities=15% Similarity=0.142 Sum_probs=59.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+| .+|.|+|.|.+|...++.++.. |.+|+... +++..+.+++.|...- ..|.+++-...|+|+-++..
T Consensus 142 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~--~~~~~~~~~~lGa~~v---~~d~~~v~~g~Dvv~d~~g~ 209 (315)
T 3goh_A 142 KQ-REVLIVGFGAVNNLLTQMLNNA------GYVVDLVS--ASLSQALAAKRGVRHL---YREPSQVTQKYFAIFDAVNS 209 (315)
T ss_dssp SC-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEC--SSCCHHHHHHHTEEEE---ESSGGGCCSCEEEEECC---
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEE--ChhhHHHHHHcCCCEE---EcCHHHhCCCccEEEECCCc
Confidence 57 9999999999999999999999 99876554 4566788888887531 22323333568999988765
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
... .+....++++-.++..++
T Consensus 210 ~~~----~~~~~~l~~~G~~v~~g~ 230 (315)
T 3goh_A 210 QNA----AALVPSLKANGHIICIQD 230 (315)
T ss_dssp --------TTGGGEEEEEEEEEECC
T ss_pred hhH----HHHHHHhcCCCEEEEEeC
Confidence 332 445667777776665544
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=92.91 E-value=0.11 Score=51.92 Aligned_cols=73 Identities=22% Similarity=0.198 Sum_probs=43.0
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~v~~ADvVILa 185 (317)
.++| +++.|+|.|-+|.+++..|.+. |.+|++.+|+.++..+.+.+.+.... ...+.++ .....|+||.+
T Consensus 361 ~l~~-k~vlV~GaGGig~aia~~L~~~------G~~V~i~~R~~~~a~~la~~~~~~~~--~~~dl~~~~~~~~DilVN~ 431 (523)
T 2o7s_A 361 PLAS-KTVVVIGAGGAGKALAYGAKEK------GAKVVIANRTYERALELAEAIGGKAL--SLTDLDNYHPEDGMVLANT 431 (523)
T ss_dssp ------CEEEECCSHHHHHHHHHHHHH------CC-CEEEESSHHHHHHHHHHTTC-CE--ETTTTTTC--CCSEEEEEC
T ss_pred ccCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHcCCcee--eHHHhhhccccCceEEEEC
Confidence 5678 8999999999999999999999 98888887764444444444432100 0122222 12346888877
Q ss_pred cCC
Q 021114 186 ISD 188 (317)
Q Consensus 186 vP~ 188 (317)
++.
T Consensus 432 agv 434 (523)
T 2o7s_A 432 TSM 434 (523)
T ss_dssp SST
T ss_pred CCC
Confidence 764
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.076 Score=50.36 Aligned_cols=90 Identities=11% Similarity=0.063 Sum_probs=53.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcC-CceEEEEecCCc--ccHHHHHHCCceecCCCcCCH-HhhcCcCCEEEEcc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~-G~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~-~e~v~~ADvVILav 186 (317)
+||+|+| .|.+|..+.+.|.+. ++ .++++...+... +... -.|... ...+. .+.+.++|+|++|+
T Consensus 4 ~kV~I~GAtG~iG~~llr~L~~~----~~p~~elv~i~s~~~~G~~~~---~~~~~i---~~~~~~~~~~~~vDvVf~a~ 73 (336)
T 2r00_A 4 FNVAIFGATGAVGETMLEVLQER----EFPVDELFLLASERSEGKTYR---FNGKTV---RVQNVEEFDWSQVHIALFSA 73 (336)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT----TCCEEEEEEEECTTTTTCEEE---ETTEEE---EEEEGGGCCGGGCSEEEECS
T ss_pred cEEEEECCCCHHHHHHHHHHhcC----CCCCEEEEEEECCCCCCCcee---ecCcee---EEecCChHHhcCCCEEEECC
Confidence 7899999 999999999988765 00 234443333211 1000 001100 01111 12346899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....+..+... +.|+.++|.++.
T Consensus 74 g~~~s~~~a~~~~---~~G~~vId~s~~ 98 (336)
T 2r00_A 74 GGELSAKWAPIAA---EAGVVVIDNTSH 98 (336)
T ss_dssp CHHHHHHHHHHHH---HTTCEEEECSST
T ss_pred CchHHHHHHHHHH---HcCCEEEEcCCc
Confidence 9877666666544 458888887764
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.065 Score=52.10 Aligned_cols=70 Identities=14% Similarity=0.207 Sum_probs=47.6
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+++| |+|.|||.|-.|.+.|+.|.+. |++|+..+.+.... ..... .|+....+. ...+.++.+|+||+.
T Consensus 2 ~~~~-~~v~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~--~~~~~~~~~d~vV~s 71 (439)
T 2x5o_A 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERHTGS--LNDEWLMAADLIVAS 71 (439)
T ss_dssp CCTT-CCEEEECCHHHHHHHHHHHHTT------TCCCEEEESSSSCTTGGGSC-TTSCEEESS--CCHHHHHTCSEEEEC
T ss_pred CCCC-CEEEEEeecHHHHHHHHHHHhC------CCEEEEEECCCCcchhHHhh-CCCEEEECC--CcHHHhccCCEEEeC
Confidence 4678 9999999999999999999998 99987766553321 11122 465431111 125566689999997
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 72 ~ 72 (439)
T 2x5o_A 72 P 72 (439)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.39 Score=45.77 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=53.1
Q ss_pred CEEEEEeccchHHHHHHHHHh---hhhhhcCCceEEEEecC-CcccHHHHHH----CC------------ceecCCC---
Q 021114 112 NQIGVIGWGSQGPAQAQNLRD---SLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENGT--- 168 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~---~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~~--- 168 (317)
.||||+|+|.+|..+.+.|.+ . .+++++...+. +.+......+ .| +.. ++.
T Consensus 3 ikVgI~G~G~iGr~l~r~l~~~~~~-----~~~eivai~~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v-~g~~i~ 76 (339)
T 2x5j_O 3 VRVAINGFGRIGRNVVRALYESGRR-----AEITVVAINELADAAGMAHLLKYDTSHGRFAWEVRQERDQLFV-GDDAIR 76 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTSGG-----GTEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEE-TTEEEE
T ss_pred eEEEEECcCHHHHHHHHHHHcCCCC-----CCEEEEEEeCCCCHHHHHHHhcccccCCCCCceEEEcCCeeEE-CCEEEE
Confidence 589999999999999999876 3 04565433332 2222222221 00 000 000
Q ss_pred ---cCCHHhhc-C--cCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 169 ---LGDIYETI-S--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 169 ---~~~~~e~v-~--~ADvVILavP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
..+++++- . ++|+|+.|+|.....+.....++ .|+ +|++.++
T Consensus 77 v~~~~dp~~l~~~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~a 126 (339)
T 2x5j_O 77 VLHERSLQSLPWRELGVDVVLDCTGVYGSREHGEAHIA---AGAKKVLFSHPG 126 (339)
T ss_dssp EECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHHHHHH---TTCSEEEESSCC
T ss_pred EEecCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCCEEEEeccc
Confidence 12333321 1 79999999998877776665443 344 4666665
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.17 Score=47.17 Aligned_cols=76 Identities=16% Similarity=0.095 Sum_probs=49.1
Q ss_pred cccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHH-HCCceecCCCcCC---HHhhcCcC
Q 021114 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEAR-AAGFTEENGTLGD---IYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~---~~e~v~~A 179 (317)
..+++ |+|.|.| .|.+|..+++.|.+. | ++|++..|......+... ..++..-.....+ ++++++++
T Consensus 28 ~~~~~-~~ilVtGatG~iG~~l~~~L~~~------g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~ 100 (377)
T 2q1s_A 28 SKLAN-TNVMVVGGAGFVGSNLVKRLLEL------GVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEY 100 (377)
T ss_dssp GGGTT-CEEEEETTTSHHHHHHHHHHHHT------TCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCC
T ss_pred HHhCC-CEEEEECCccHHHHHHHHHHHHc------CCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCC
Confidence 45788 9999999 599999999999999 9 988776665332111110 1122110111233 44577899
Q ss_pred CEEEEccCC
Q 021114 180 DLVLLLISD 188 (317)
Q Consensus 180 DvVILavP~ 188 (317)
|+||-+...
T Consensus 101 d~Vih~A~~ 109 (377)
T 2q1s_A 101 DYVFHLATY 109 (377)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCc
Confidence 999987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=92.77 E-value=0.63 Score=45.80 Aligned_cols=94 Identities=19% Similarity=0.171 Sum_probs=60.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHH----hhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIY----ETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~----e~v~~ADvVILav 186 (317)
++|.|+|.|++|..+|+.|.+ +++|.+-....++....+.+.. ...-++...+.+ +-+.++|+++.+|
T Consensus 236 ~~v~I~GgG~ig~~lA~~L~~-------~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T 308 (461)
T 4g65_A 236 RRIMIVGGGNIGASLAKRLEQ-------TYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALT 308 (461)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-------TSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECC
T ss_pred cEEEEEcchHHHHHHHHHhhh-------cCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcc
Confidence 899999999999999999854 5677777665544444555532 211123333432 3478999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
.++..-=+..-++..+....++..+.
T Consensus 309 ~~De~Ni~~~llAk~~gv~kvIa~vn 334 (461)
T 4g65_A 309 NEDETNIMSAMLAKRMGAKKVMVLIQ 334 (461)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred cCcHHHHHHHHHHHHcCCcccccccc
Confidence 88764334445555565555665443
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.37 Score=44.97 Aligned_cols=94 Identities=10% Similarity=-0.019 Sum_probs=58.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC--ceecCCCc---CCHHhhc------C
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--FTEENGTL---GDIYETI------S 177 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G--~~~~~~~~---~~~~e~v------~ 177 (317)
+| .+|.|+|.|.+|...++.++.. |.+.++..+.+++..+.+++.+ ..+..... .+..+.+ .
T Consensus 179 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~ 251 (363)
T 3m6i_A 179 LG-DPVLICGAGPIGLITMLCAKAA------GACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGI 251 (363)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHHT------TCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSC
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCC
Confidence 57 8999999999999999999998 9873344444455566666652 11100000 1122222 2
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..|+|+-++.... .++.....++++-.++..+
T Consensus 252 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 252 EPAVALECTGVES---SIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp CCSEEEECSCCHH---HHHHHHHHSCTTCEEEECC
T ss_pred CCCEEEECCCChH---HHHHHHHHhcCCCEEEEEc
Confidence 5899999887542 4455566777777766554
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.18 Score=44.86 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=44.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCc-CCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISG-SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~-ADvVILavP 187 (317)
|+|.|.|.|.+|..+++.|.+. |++|++..|..++. . ...-+.. .... ++++++++ +|+||-+..
T Consensus 4 ~~ilVtGaG~iG~~l~~~L~~~------g~~V~~~~r~~~~~-~--~~~~~~~--~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 4 SKILIAGCGDLGLELARRLTAQ------GHEVTGLRRSAQPM-P--AGVQTLI--ADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCEEEEECTTSCC-C--TTCCEEE--CCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CcEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcccc-c--cCCceEE--ccCCChHHHHHhhcCCCCEEEEeCC
Confidence 8999999999999999999999 99987777654321 0 1111221 1122 23445666 999998764
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.74 E-value=0.15 Score=47.65 Aligned_cols=92 Identities=18% Similarity=0.227 Sum_probs=61.8
Q ss_pred CCCCEEEEE-eccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCE
Q 021114 109 NGINQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (317)
Q Consensus 109 ~GikkIGII-G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~ADv 181 (317)
+| ++|.|+ |.|.+|...++.++.. |.+|++..++ ++..+.+++.|.... +....+..+.+. ..|+
T Consensus 167 ~g-~~VlV~Gg~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 167 EG-ESVLIHGGTSGIGTTAIQLARAF------GAEVYATAGS-TGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CC-CEEEEEcCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceE
Confidence 56 899999 6899999999999998 9987655544 455667777775310 111223434332 5899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+-++... .+++.+..++++..++.++
T Consensus 239 vid~~g~~----~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 239 ILDMIGAA----YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp EEESCCGG----GHHHHHHTEEEEEEEEECC
T ss_pred EEECCCHH----HHHHHHHHhccCCEEEEEE
Confidence 99988764 3455566777776666554
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=92.66 E-value=0.71 Score=41.89 Aligned_cols=92 Identities=16% Similarity=0.232 Sum_probs=57.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhhcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e~v~~ADvVI 183 (317)
+| .+|.-||+|. |.-....++.. |.+| ++.+.++...+.+++. |.... .....+..+.-...|+|+
T Consensus 90 ~~-~~vLDiGcG~-G~~~~~la~~~------~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~fD~v~ 160 (318)
T 2fk8_A 90 PG-MTLLDIGCGW-GTTMRRAVERF------DVNV-IGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFAEPVDRIV 160 (318)
T ss_dssp TT-CEEEEESCTT-SHHHHHHHHHH------CCEE-EEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCCCCCSEEE
T ss_pred Cc-CEEEEEcccc-hHHHHHHHHHC------CCEE-EEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCCCCcCEEE
Confidence 57 8999999998 44433334444 6654 5666666555555442 32100 001234444436789999
Q ss_pred Ec-----cCCchHHHHHHHHHhcCCCCcEEE
Q 021114 184 LL-----ISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 184 La-----vP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
.. +++....++++++...||||..++
T Consensus 161 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 191 (318)
T 2fk8_A 161 SIEAFEHFGHENYDDFFKRCFNIMPADGRMT 191 (318)
T ss_dssp EESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred EeChHHhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence 87 555556678999999999988765
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.28 Score=48.31 Aligned_cols=70 Identities=14% Similarity=0.126 Sum_probs=49.5
Q ss_pred cCCCCEEEEEe-----cc---chHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCC
Q 021114 108 FNGINQIGVIG-----WG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGD 171 (317)
Q Consensus 108 l~GikkIGIIG-----~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~ 171 (317)
|+| .+|+||| .| ++..|++..+... |++|.+....+ +...+. +.+.|... ....+
T Consensus 186 l~G-lkva~vgd~~~s~Gd~nnVa~Sli~~l~~l------G~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v--~~~~d 256 (418)
T 2yfk_A 186 LKG-KKVAMTWAYSPSYGKPLSVPQGIVGLMTRL------GMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNF--TKTNS 256 (418)
T ss_dssp GTT-CEEEEECCCCSSSCCCSHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEE--EEESC
T ss_pred cCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCEE--EEEcC
Confidence 788 9999997 24 3999999999988 99987765442 122222 33456311 01568
Q ss_pred HHhhcCcCCEEEEcc
Q 021114 172 IYETISGSDLVLLLI 186 (317)
Q Consensus 172 ~~e~v~~ADvVILav 186 (317)
++|+++++|+|..-+
T Consensus 257 ~~eav~~ADVVytd~ 271 (418)
T 2yfk_A 257 MAEAFKDADVVYPKS 271 (418)
T ss_dssp HHHHHTTCSEEEECC
T ss_pred HHHHhcCCCEEEEcc
Confidence 999999999999865
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=92.52 E-value=0.54 Score=46.13 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=66.5
Q ss_pred cccCCCCEEEEEeccc----------hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-------------Cc
Q 021114 106 DAFNGINQIGVIGWGS----------QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------GF 162 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~----------mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-------------G~ 162 (317)
..++| ++|+|.|+-- -...+++.|.+. |.+|.+++.. ....+..... ++
T Consensus 325 ~~~~~-~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~------g~~v~~~DP~-~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (467)
T 2q3e_A 325 NTVTD-KKIAILGFAFKKDTGDTRESSSIYISKYLMDE------GAHLHIYDPK-VPREQIVVDLSHPGVSEDDQVSRLV 396 (467)
T ss_dssp TCCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSS-SCHHHHHHHHCC------CHHHHHE
T ss_pred cccCC-CEEEEEeeccCCCCcchhhChHHHHHHHHHHC------CCEEEEEcCc-cCHHHHhhhhccccccccccccCce
Confidence 35789 9999999853 677788888888 9987665433 1111110110 22
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCc
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv 214 (317)
.. ..+..|+++++|+|++++.-.+..++ ++++...|+...+|+|..++
T Consensus 397 ~~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~ 445 (467)
T 2q3e_A 397 TI----SKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRV 445 (467)
T ss_dssp EE----CSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCT
T ss_pred ee----cCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCc
Confidence 21 24788899999999999998876552 55777778776668888876
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.57 Score=43.69 Aligned_cols=94 Identities=10% Similarity=0.046 Sum_probs=61.4
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc---cHHHHHHCCceec-CCC---cCCHHhhcC---
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR---SFAEARAAGFTEE-NGT---LGDIYETIS--- 177 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~---s~~~A~~~G~~~~-~~~---~~~~~e~v~--- 177 (317)
+| .+|.|+|. |.+|...++.++.. |.++++..+..+. ..+.+++.|...- +.. ..+..+...
T Consensus 167 ~g-~~VlV~Ga~G~vG~~aiqlak~~------Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PG-DSVIQNASNSGVGQAVIQIAAAL------GLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSC
T ss_pred CC-CEEEEeCCcCHHHHHHHHHHHHc------CCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCC
Confidence 57 89999998 99999999999998 9887766655432 3456778886420 000 011222222
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
..|+|+-++..... .+....++++-.++..++
T Consensus 240 ~~Dvvid~~g~~~~----~~~~~~l~~~G~iv~~G~ 271 (357)
T 1zsy_A 240 QPRLALNCVGGKSS----TELLRQLARGGTMVTYGG 271 (357)
T ss_dssp CCSEEEESSCHHHH----HHHHTTSCTTCEEEECCC
T ss_pred CceEEEECCCcHHH----HHHHHhhCCCCEEEEEec
Confidence 37999988874322 345677888777776654
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.7 Score=43.41 Aligned_cols=95 Identities=15% Similarity=0.138 Sum_probs=62.5
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc---CcCCEEE
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---SGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v---~~ADvVI 183 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+... + ++..+.+++.|.... +....+..+.+ ...|+||
T Consensus 183 ~g-~~VlV~Ga~G~vG~~~~qla~~~------Ga~Vi~~~-~-~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 183 TG-KRVLILGASGGVGTFAIQVMKAW------DAHVTAVC-S-QDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEE-C-GGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEe-C-hHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEE
Confidence 57 8999999 799999999999998 98876544 3 355677888885320 11112333333 3589999
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
-++.... ..+++....++++-.++.+++.
T Consensus 254 d~~g~~~--~~~~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 254 DNVGGST--ETWAPDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ESSCTTH--HHHGGGGBCSSSCCEEEESCCS
T ss_pred ECCCChh--hhhHHHHHhhcCCcEEEEeCCC
Confidence 8887542 1234555667777777666543
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.54 Score=44.78 Aligned_cols=95 Identities=19% Similarity=0.137 Sum_probs=52.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHH----CC------------ceecCC------C
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENG------T 168 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~------~ 168 (317)
.||||+|+|.+|..+.+.|.+.. +.+++++..++. +.+......+ .| +.. ++ .
T Consensus 3 ikVgI~G~G~IGr~v~r~l~~~~---~~~~evvaInd~~~~~~~~~l~~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~~ 78 (339)
T 3b1j_A 3 IRVAINGFGRIGRNFLRCWFGRQ---NTDLEVVAINNTSDARTAAHLLEYDSVLGRFNADISYDENSITV-NGKTMKIVC 78 (339)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCS---CCSEEEEEEECSSCHHHHHHHHHCCTTTCCCCSCEEEETTEEEE-TTEEEEEEC
T ss_pred eEEEEECCCHHHHHHHHHHHhcC---CCCeEEEEEecCCCHHHHHHHhccccccCCCCCcEEEcCCeeee-cCceEEEEe
Confidence 58999999999999999987640 014665433332 2111111111 10 000 00 0
Q ss_pred cCCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCcE--EEEecC
Q 021114 169 LGDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNSI--LGLSHG 213 (317)
Q Consensus 169 ~~~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~gai--Vi~~~G 213 (317)
..+++++- .++|+|+.|++.....+.....++ .|+. |++.++
T Consensus 79 ~~dp~~l~w~~~~vDvV~e~tg~~~s~e~a~~~l~---~GakkVVId~~~ 125 (339)
T 3b1j_A 79 DRNPLNLPWKEWDIDLVIESTGVFVTAEGASKHIQ---AGAKKVLITAPG 125 (339)
T ss_dssp CSCGGGSCTTTTTCCEEEECSSSCCBHHHHHHHHH---TTCSEEEESSCC
T ss_pred cCChHHCcccccCCCEEEECCCccccHHHHHHHHH---cCCcEEEEeCCC
Confidence 22444542 278999999998777666665443 3433 555443
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=92.31 E-value=0.095 Score=50.82 Aligned_cols=68 Identities=21% Similarity=0.130 Sum_probs=44.1
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEE
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVL 183 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVI 183 (317)
-++| ++|+|||-|.+|..+++.+++. |+++++.+ .+.............. ....| +.++++++|+|+
T Consensus 32 ~~~~-~~IlIlG~G~lg~~~~~aa~~l------G~~v~v~d-~~~~~p~~~~ad~~~~--~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPG-AWLGMVGGGQLGRMFCFAAQSM------GYRVAVLD-PDPASPAGAVADRHLR--AAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEC-SCTTCHHHHHSSEEEC--CCTTCHHHHHHHHHHCSEEE
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEC-CCCcCchhhhCCEEEE--CCcCCHHHHHHHHhcCCEEE
Confidence 5688 9999999999999999999999 99876654 3222222222222221 11223 334566888887
Q ss_pred E
Q 021114 184 L 184 (317)
Q Consensus 184 L 184 (317)
.
T Consensus 102 ~ 102 (419)
T 4e4t_A 102 T 102 (419)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.75 Score=45.48 Aligned_cols=95 Identities=9% Similarity=0.115 Sum_probs=65.3
Q ss_pred cccCCCCEEEEEecc----------chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-C------------Cc
Q 021114 106 DAFNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-A------------GF 162 (317)
Q Consensus 106 ~~l~GikkIGIIG~G----------~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~------------G~ 162 (317)
..++| ++|+|.|+- +=...+++.|.+. |.+|.+++.. .. +.+.+ . .+
T Consensus 324 ~~~~~-~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~------g~~v~~~DP~-~~--~~~~~~~~~~~~~~~~~~~~~ 393 (478)
T 2y0c_A 324 EDLTG-RTFAIWGLAFKPNTDDMREAPSRELIAELLSR------GARIAAYDPV-AQ--EEARRVIALDLADHPSWLERL 393 (478)
T ss_dssp SCCTT-CEEEEECCSSSSSCCCCTTCHHHHHHHHHHHT------TCEEEEECTT-TH--HHHHHHHHHHTTTCHHHHTTE
T ss_pred ccCCC-CEEEEEecccCCCCCccccChHHHHHHHHHHC------CCEEEEECCC-cc--HHHHHhhccccccccccccce
Confidence 36789 999999973 2455677777777 9887665433 21 22211 1 23
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHHHHHhcCCCCcEEEEecCch
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
.. ..+.+++++++|+|++++.-.+... -++++...|+. .+|+|..++.
T Consensus 394 ~~----~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~-~~i~D~r~~~ 442 (478)
T 2y0c_A 394 SF----VDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKT-PVIFDGRNLY 442 (478)
T ss_dssp EE----CSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSS-CEEEESSCCS
T ss_pred ee----cCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCC-CEEEECCCCC
Confidence 32 3578899999999999999877654 34567777764 7888998863
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=92.27 E-value=0.36 Score=45.61 Aligned_cols=73 Identities=11% Similarity=0.071 Sum_probs=51.9
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHHHHCCceecCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
..|+| .+|++||= +++..|++..+... .|+++.+...+ ++...+.+++.|...+ ...+++|++++
T Consensus 150 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~~ 221 (310)
T 3csu_A 150 GRLDN-LHVAMVGDLKYGRTVHSLTQALAKF-----DGNRFYFIAPDALAMPQYILDMLDEKGIAWS--LHSSIEEVMAE 221 (310)
T ss_dssp SCSSS-CEEEEESCTTTCHHHHHHHHHHHTS-----SSCEEEEECCGGGCCCHHHHHHHHHTTCCEE--ECSCGGGTTTT
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCcccccCHHHHHHHHHcCCeEE--EEcCHHHHhcC
Confidence 46889 99999997 58999999988654 17887766433 2223355666674310 14689999999
Q ss_pred CCEEEEcc
Q 021114 179 SDLVLLLI 186 (317)
Q Consensus 179 ADvVILav 186 (317)
||+|..-.
T Consensus 222 aDvvyt~~ 229 (310)
T 3csu_A 222 VDILYMTR 229 (310)
T ss_dssp CSEEEECC
T ss_pred CCEEEECC
Confidence 99999864
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=92.26 E-value=0.35 Score=47.89 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=29.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vi 144 (317)
.+|+| ++|+|.|+|++|...|+.|.+. |.+|+
T Consensus 231 ~~l~g-~~vaVqGfGnVG~~~a~~L~e~------GakvV 262 (440)
T 3aog_A 231 LQVEG-ARVAIQGFGNVGNAAARAFHDH------GARVV 262 (440)
T ss_dssp CCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEE
T ss_pred CCccC-CEEEEeccCHHHHHHHHHHHHC------CCEEE
Confidence 37899 9999999999999999999998 98876
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=92.19 E-value=1.1 Score=41.66 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=47.0
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHH-CCceecCCC-cCC---HHhhcCcCCEE
Q 021114 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARA-AGFTEENGT-LGD---IYETISGSDLV 182 (317)
Q Consensus 110 GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~-~G~~~~~~~-~~~---~~e~v~~ADvV 182 (317)
+ |+|.|.| .|.+|.++++.|.+. |++|++..|+.++.. +.... .++..-... ..+ +.++++++|+|
T Consensus 5 ~-~~ilVtGatG~iG~~l~~~L~~~------g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~V 77 (352)
T 1xgk_A 5 K-KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLA 77 (352)
T ss_dssp C-CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred C-CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEE
Confidence 5 8899999 699999999999998 998877666544321 11111 133211111 223 55678999999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|.+...
T Consensus 78 i~~a~~ 83 (352)
T 1xgk_A 78 FINTTS 83 (352)
T ss_dssp EECCCS
T ss_pred EEcCCC
Confidence 977653
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.16 E-value=0.54 Score=40.87 Aligned_cols=45 Identities=22% Similarity=0.168 Sum_probs=36.4
Q ss_pred CcccccccccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 99 DLFKLLPDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 99 w~f~~~~~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|.+...+..++| |++.|.|. |-||.++|+.|.+. |++|++..|+.
T Consensus 3 ~~~~~~~~~l~~-k~vlITGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 48 (247)
T 3i1j_A 3 FDYSAHPELLKG-RVILVTGAARGIGAAAARAYAAH------GASVVLLGRTE 48 (247)
T ss_dssp CCCCCCTTTTTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCCCCCccCCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEecCH
Confidence 444445678999 99999995 78999999999999 99987776653
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.24 Score=45.88 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=61.3
Q ss_pred CCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+|.| .+|...++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 144 ~g-~~VlV~Ga~g~iG~~~~~~a~~~------Ga~Vi~~~~~-~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~D 215 (340)
T 3gms_A 144 RN-DVLLVNACGSAIGHLFAQLSQIL------NFRLIAVTRN-NKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGAD 215 (340)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHH------TCEEEEEESS-STTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CC-CEEEEeCCccHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCc
Confidence 57 999999998 8999999999998 9987665544 445677777775310 11112333332 2589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++...... +....++++-.++.++
T Consensus 216 vvid~~g~~~~~----~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 216 AAIDSIGGPDGN----ELAFSLRPNGHFLTIG 243 (340)
T ss_dssp EEEESSCHHHHH----HHHHTEEEEEEEEECC
T ss_pred EEEECCCChhHH----HHHHHhcCCCEEEEEe
Confidence 999988754432 3335677777766554
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.56 Score=45.43 Aligned_cols=69 Identities=23% Similarity=0.183 Sum_probs=41.2
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc-----eEEEEecCCccc----HHHHH--HCCce---ecCCCcCCHHhhc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----VVKVGLRKGSRS----FAEAR--AAGFT---EENGTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~-----~Vivg~r~~~~s----~~~A~--~~G~~---~~~~~~~~~~e~v 176 (317)
.||+||| .|.+|.+++-.|... ++ .+.+.+-..... ...+. ..+.. ..-....+..+.+
T Consensus 33 ~KV~ViGAaG~VG~~la~~l~~~------~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~i~~~~y~~~ 106 (375)
T 7mdh_A 33 VNIAVSGAAGMISNHLLFKLASG------EVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVF 106 (375)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCChHHHHHHHHHHcC------CcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcEEecCCHHHh
Confidence 7999999 899999999999876 44 144332211111 11222 22211 0000123567889
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+||++-
T Consensus 107 ~daDvVVita 116 (375)
T 7mdh_A 107 EDVDWALLIG 116 (375)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEcC
Confidence 9999999964
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.15 Score=47.56 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=28.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
||||+|||-|..|..+++.+++. |+++++.+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~------G~~vv~vd~ 32 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKA------GMKVVLVDK 32 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEEES
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCEEEEEeC
Confidence 69999999999999999999999 999866643
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.62 Score=42.12 Aligned_cols=72 Identities=17% Similarity=0.147 Sum_probs=44.5
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC-cccH---HHHHHCC-ceecCCCcCC---HHhhcCc--C
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSF---AEARAAG-FTEENGTLGD---IYETISG--S 179 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~---~~A~~~G-~~~~~~~~~~---~~e~v~~--A 179 (317)
||+|.|.| .|-+|..+++.|.+. |++|++..|.. .... +.....+ +..-.....+ +++++++ .
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~ 74 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQ------GIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMP 74 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCC
T ss_pred CcEEEEeCCCchhHHHHHHHHHhC------CCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCC
Confidence 47899999 799999999999998 99987766532 1111 1111122 2110111233 4456777 9
Q ss_pred CEEEEccCC
Q 021114 180 DLVLLLISD 188 (317)
Q Consensus 180 DvVILavP~ 188 (317)
|+||-+...
T Consensus 75 d~vih~A~~ 83 (347)
T 1orr_A 75 DSCFHLAGQ 83 (347)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 999987653
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=91.89 E-value=0.37 Score=47.32 Aligned_cols=36 Identities=17% Similarity=0.082 Sum_probs=30.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHh-hhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~-~~~~~~~G~~Vivg~r 148 (317)
.+++| ++|+|.|+|++|...++.|.+ . |.+|+...+
T Consensus 205 ~~l~g-~~vaVqG~GnVG~~~a~~L~e~~------GakvVavsD 241 (415)
T 2tmg_A 205 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVSD 241 (415)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEEC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHHHhc------CCEEEEEEe
Confidence 47999 999999999999999999998 7 888763333
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.83 Score=37.11 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=54.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhc----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v----~~AD 180 (317)
+| ++|.-||+|. |. ++..+.+.. .+.+ +++.+.++...+.+++ .|....-....+..+.+ ...|
T Consensus 25 ~~-~~vldiG~G~-G~-~~~~l~~~~----~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D 96 (178)
T 3hm2_A 25 PH-ETLWDIGGGS-GS-IAIEWLRST----PQTT-AVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDDVPDNPD 96 (178)
T ss_dssp TT-EEEEEESTTT-TH-HHHHHHTTS----SSEE-EEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGGCCSCCS
T ss_pred CC-CeEEEeCCCC-CH-HHHHHHHHC----CCCe-EEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhccCCCCC
Confidence 56 8999999997 43 444443331 0334 4677776665665553 23210000011221222 5689
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|++..+... .++++++...||||..+++.
T Consensus 97 ~i~~~~~~~~-~~~l~~~~~~L~~gG~l~~~ 126 (178)
T 3hm2_A 97 VIFIGGGLTA-PGVFAAAWKRLPVGGRLVAN 126 (178)
T ss_dssp EEEECC-TTC-TTHHHHHHHTCCTTCEEEEE
T ss_pred EEEECCcccH-HHHHHHHHHhcCCCCEEEEE
Confidence 9998776655 56888999999998887643
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=91.78 E-value=0.5 Score=44.94 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=53.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHH----CC------------ceecCCC-----
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AG------------FTEENGT----- 168 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G------------~~~~~~~----- 168 (317)
+.||||+|.|.+|.-+.+.|.+. ..++++...+. +.+......+ .| +.. ++.
T Consensus 1 mikVgI~G~G~iGr~l~R~l~~~-----~~veivain~~~~~~~~~~ll~~ds~~G~~~~~v~~~~~~l~v-~g~~i~v~ 74 (334)
T 3cmc_O 1 AVKVGINGFGRIGRNVFRAALKN-----PDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVV-NGKEIIVK 74 (334)
T ss_dssp CEEEEEESCSHHHHHHHHHHTTC-----TTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE-TTEEEEEE
T ss_pred CeEEEEECCCHHHHHHHHHHhCC-----CCeEEEEEeCCCCHHHHHHHhccCCcCCCcCceEEEccCcEEE-CCEEEEEE
Confidence 36899999999999999998765 14565444433 2211111111 11 000 000
Q ss_pred -cCCHHhh-cC--cCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 169 -LGDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 169 -~~~~~e~-v~--~ADvVILavP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
..+++++ .. ++|+|+.++|.....+..+..++ .|+ +|++.++
T Consensus 75 ~~~dp~~i~w~~~~vDvV~~atg~~~s~e~a~~~l~---~Gak~vVId~pa 122 (334)
T 3cmc_O 75 AERDPENLAWGEIGVDIVVESTGRFTKREDAAKHLE---AGAKKVIISAPA 122 (334)
T ss_dssp CCSSGGGCCTGGGTCCEEEECSSSCCBHHHHTHHHH---TTCSEEEESSCC
T ss_pred ecCChhhcCcccCccCEEEECCCchhhHHHHHHHHH---CCCCEEEEeCCC
Confidence 1133333 12 79999999998877766665443 465 7776654
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.76 E-value=0.23 Score=45.65 Aligned_cols=92 Identities=15% Similarity=0.130 Sum_probs=57.7
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+| .|.+|...++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 140 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D 211 (327)
T 1qor_A 140 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVR 211 (327)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHc------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCce
Confidence 47 8999999 799999999999999 9987655543 444556666564210 11111222222 1478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||-++.. +.+++..+.++++..++..+
T Consensus 212 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 212 VVYDSVGR----DTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEECSCG----GGHHHHHHTEEEEEEEEECC
T ss_pred EEEECCch----HHHHHHHHHhcCCCEEEEEe
Confidence 88888772 23455566676666655444
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.71 E-value=0.32 Score=43.01 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=33.2
Q ss_pred ccccCCCCEEEEEec-cc-hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 105 PDAFNGINQIGVIGW-GS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 105 ~~~l~GikkIGIIG~-G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
...++| |++.|.|. |. ||.++|+.|.+. |++|++..|..
T Consensus 17 ~~~l~~-k~vlITGasg~GIG~~~a~~l~~~------G~~V~~~~r~~ 57 (266)
T 3o38_A 17 HGLLKG-KVVLVTAAAGTGIGSTTARRALLE------GADVVISDYHE 57 (266)
T ss_dssp CSTTTT-CEEEESSCSSSSHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred ccCCCC-CEEEEECCCCCchHHHHHHHHHHC------CCEEEEecCCH
Confidence 456889 99999998 85 999999999999 99987776653
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=91.69 E-value=0.59 Score=44.40 Aligned_cols=96 Identities=14% Similarity=0.121 Sum_probs=53.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHH----CCce-----ec------CC---C---c
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARA----AGFT-----EE------NG---T---L 169 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~----~G~~-----~~------~~---~---~ 169 (317)
.||||+|+|.+|.-+.+.|.+.. +.+++++...+. +.+......+ .|-- .+ ++ . .
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~---~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~ 77 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERK---NPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAE 77 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT---CTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECC
T ss_pred CEEEEEccCHHHHHHHHHHHhCC---CCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEec
Confidence 47999999999999999887640 014676544432 1111111111 1110 00 00 0 1
Q ss_pred CCHHhh-cC--cCCEEEEccCCchHHHHHHHHHhcCCCCc--EEEEecC
Q 021114 170 GDIYET-IS--GSDLVLLLISDAAQADNYEKIFSCMKPNS--ILGLSHG 213 (317)
Q Consensus 170 ~~~~e~-v~--~ADvVILavP~~~~~~vl~ei~~~lk~ga--iVi~~~G 213 (317)
.+++++ .. ++|+|+.|+|.....+..++.+ +.|+ +|++.++
T Consensus 78 ~dp~~l~w~~~~vDvV~~atg~~~s~e~a~~~l---~aGakkvVId~~a 123 (332)
T 1hdg_O 78 PDPSKLPWKDLGVDFVIESTGVFRNREKAELHL---QAGAKKVIITAPA 123 (332)
T ss_dssp SSGGGSCHHHHTCCEEEECSSSCCBHHHHTHHH---HTTCSEEEESSCC
T ss_pred CChHHCcccccCCCEEEECCccchhHHHHHHHH---HcCCcEEEEeCCC
Confidence 133333 12 7999999999887766665544 3465 7776654
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=91.67 E-value=1 Score=44.24 Aligned_cols=64 Identities=19% Similarity=0.245 Sum_probs=46.0
Q ss_pred CCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 110 GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
+ |+|.|.| .|.+|..+++.|.+. |++|++..|...+. ..+.. | ......++++++|+||-+...
T Consensus 147 ~-m~VLVTGatG~IG~~l~~~L~~~------G~~V~~l~R~~~~~------~~v~~-d-~~~~~~~~l~~~D~Vih~A~~ 211 (516)
T 3oh8_A 147 P-LTVAITGSRGLVGRALTAQLQTG------GHEVIQLVRKEPKP------GKRFW-D-PLNPASDLLDGADVLVHLAGE 211 (516)
T ss_dssp C-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESSSCCT------TCEEC-C-TTSCCTTTTTTCSEEEECCCC
T ss_pred C-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCCCCc------cceee-c-ccchhHHhcCCCCEEEECCCC
Confidence 6 8999999 799999999999999 99987777664321 11221 1 112345678899999987643
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.31 Score=46.65 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=48.5
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhcC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v~ 177 (317)
.|+| .||++|| .+++..|++..+... |+++.+...+. +...+. +.+.|...+ ...+++ +++
T Consensus 172 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~--~~~d~~-av~ 241 (339)
T 4a8t_A 172 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 241 (339)
T ss_dssp CGGG-CEEEEESSCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEE--EECChh-HHc
Confidence 6888 9999999 568899999999888 99887664432 122222 234453210 146888 999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
++|+|..-+
T Consensus 242 ~aDvvytd~ 250 (339)
T 4a8t_A 242 GADFLYTDV 250 (339)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecC
Confidence 999999743
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.85 Score=42.57 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=29.5
Q ss_pred CCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 021114 98 RDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (317)
Q Consensus 98 ~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~ 147 (317)
+|-+......|+. .+|.|||+|-+|..++++|... |. ++.+.+
T Consensus 24 ~~G~~~~q~kL~~-~~VlVvGaGGlGs~va~~La~a------GVG~i~lvD 67 (292)
T 3h8v_A 24 RMGIVSDYEKIRT-FAVAIVGVGGVGSVTAEMLTRC------GIGKLLLFD 67 (292)
T ss_dssp --------CGGGG-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEEC
T ss_pred ccChHHHHHHHhC-CeEEEECcCHHHHHHHHHHHHc------CCCEEEEEC
Confidence 3544223467888 9999999999999999999998 76 444444
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.28 Score=46.45 Aligned_cols=93 Identities=16% Similarity=0.144 Sum_probs=58.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceec-CCC---cCCHHhhc------C
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEE-NGT---LGDIYETI------S 177 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~-~~~---~~~~~e~v------~ 177 (317)
+| .+|.|+|.|.+|...++.++.. | .+|+...+ +++..+.+++.|...- +.. ..+..+.+ .
T Consensus 195 ~g-~~VlV~GaG~vG~~aiqlak~~------Ga~~Vi~~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 195 AG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAG-SPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp BT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEES-CHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CC-CEEEEECcCHHHHHHHHHHHHc------CCceEEEEcC-CHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCC
Confidence 57 8999999999999999999998 9 47765444 4455677888886310 000 00111222 1
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..|+||-++.... .+++..+.++++-.++..+
T Consensus 267 g~Dvvid~~g~~~---~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 267 GADFILEATGDSR---ALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred CCcEEEECCCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 5799988887432 3444455566666555443
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.2 Score=46.51 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=42.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc-------eEEEEecCCc-c-cHHHHH--HC---CceecCCCcCCHHhhc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS-R-SFAEAR--AA---GFTEENGTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~-------~Vivg~r~~~-~-s~~~A~--~~---G~~~~~~~~~~~~e~v 176 (317)
+||.|+|. |.+|..++..|... |+ +|++.++... . ....+. .. .+...-....+..+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~~------g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAAG------EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccccCCeEeccChHHHh
Confidence 68999996 99999999999887 75 5655443321 1 111111 11 1110000024678889
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+||.+.
T Consensus 79 ~~~D~Vih~A 88 (327)
T 1y7t_A 79 KDADYALLVG 88 (327)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEECC
Confidence 9999999864
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.22 Score=46.06 Aligned_cols=92 Identities=14% Similarity=0.171 Sum_probs=60.9
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceec-CCCc-CCHHhhcC-----cC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE-NGTL-GDIYETIS-----GS 179 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~-~~~~-~~~~e~v~-----~A 179 (317)
+| ++|.|+|. |.+|...++.++.. |.+|+...++ ++..+.++ +.|.... |... .+..+.+. ..
T Consensus 155 ~g-~~vlI~Ga~g~iG~~~~~~a~~~------G~~V~~~~~~-~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EG-ETVYVSAASGAVGQLVGQLAKMM------GCYVVGSAGS-KEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCE
T ss_pred CC-CEEEEECCCcHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCC
Confidence 57 89999997 99999999999998 9887655543 44456665 5675210 1111 13333332 47
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+|+-++.. ..+++....++++..++..+
T Consensus 227 d~vi~~~g~----~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVGG----KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSCH----HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCCH----HHHHHHHHHHhcCCEEEEEc
Confidence 999988864 25666777787777666554
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.82 Score=40.97 Aligned_cols=40 Identities=10% Similarity=0.070 Sum_probs=33.0
Q ss_pred cccccCCCCEEEEEec-cc--hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 104 LPDAFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~-G~--mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.+..++| |++.|.|. |. ||.++|+.|.+. |++|++..+..
T Consensus 20 ~M~~l~~-k~vlVTGasg~~GIG~~ia~~l~~~------G~~V~~~~r~~ 62 (280)
T 3nrc_A 20 HMGFLAG-KKILITGLLSNKSIAYGIAKAMHRE------GAELAFTYVGQ 62 (280)
T ss_dssp --CTTTT-CEEEECCCCSTTCHHHHHHHHHHHT------TCEEEEEECTT
T ss_pred cccccCC-CEEEEECCCCCCCHHHHHHHHHHHc------CCEEEEeeCch
Confidence 4678999 99999996 56 999999999999 99987777654
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.75 Score=43.60 Aligned_cols=92 Identities=16% Similarity=0.098 Sum_probs=51.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC-CcccHHHHHHCCc--------ee-cCC------------Cc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGF--------TE-ENG------------TL 169 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~-~~~s~~~A~~~G~--------~~-~~~------------~~ 169 (317)
.||||+|.|.+|.-+.+.|... ..++++...+. +...+....+..- .. +++ ..
T Consensus 2 ikVgI~G~G~iG~~l~R~l~~~-----~~veiv~i~~~~~~~~~a~l~~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~ 76 (330)
T 1gad_O 2 IKVGINGFGRIGRIVFRAAQKR-----SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAE 76 (330)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----SSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECC
T ss_pred eEEEEECcCHHHHHHHHHHHcC-----CCeEEEEEcCCCChhHHhHhhcccccCCCCCCeEEEcCCEEEECCEEEEEEEc
Confidence 5899999999999999998765 14565444433 2221111112210 00 000 01
Q ss_pred CCHHhhc---CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 170 GDIYETI---SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 170 ~~~~e~v---~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
.+++++- .++|+|+.|+|.....+..++.+ +.|+.++|.
T Consensus 77 ~dp~~i~w~~~~vDvVf~atg~~~s~e~a~~~l---~~GakvVdl 118 (330)
T 1gad_O 77 RDPANLKWDEVGVDVVAEATGLFLTDETARKHI---TAGAKKVVM 118 (330)
T ss_dssp SSGGGGCHHHHTCSEEEECSSSCCSHHHHTHHH---HTTCSEEEE
T ss_pred CChhhCccccccCCEEEECCCccccHHHHHHHH---HCCCEEEEE
Confidence 1333321 47999999999887766665544 346655543
|
| >2h1q_A Hypothetical protein; ZP_00559375.1, structural genomics, PSI-2, protein structure initiative; 2.01A {Desulfitobacterium hafniense dcb-2} PDB: 3l5o_A | Back alignment and structure |
|---|
Probab=91.47 E-value=0.36 Score=44.80 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=51.0
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
....+| +||++||+ + +.+.+.+ .. +.++.+.++... .|... ....++++++||+|++
T Consensus 136 ~~~~~g-~kV~vIG~--~-P~i~~~l-~~------~~~v~V~d~~p~--------~g~~p----~~~~e~ll~~aD~vii 192 (270)
T 2h1q_A 136 QNEVKG-KKVGVVGH--F-PHLESLL-EP------ICDLSILEWSPE--------EGDYP----LPASEFILPECDYVYI 192 (270)
T ss_dssp TTTTTT-SEEEEESC--C-TTHHHHH-TT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGCSEEEE
T ss_pred HhhcCC-CEEEEECC--C-HHHHHHH-hC------CCCEEEEECCCC--------CCCCC----hHHHHHHhhcCCEEEE
Confidence 455678 99999999 3 5666655 44 678887777643 24332 2356778999999987
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
.-. +-...-+++++.+.++.+.++
T Consensus 193 TGs-TlvN~Ti~~lL~~~~~a~~vv 216 (270)
T 2h1q_A 193 TCA-SVVDKTLPRLLELSRNARRIT 216 (270)
T ss_dssp ETH-HHHHTCHHHHHHHTTTSSEEE
T ss_pred Eee-eeecCCHHHHHHhCccCCeEE
Confidence 632 112234556666665543444
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=91.43 E-value=0.2 Score=45.78 Aligned_cols=77 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred cccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCC---HHhhcCc
Q 021114 104 LPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGD---IYETISG 178 (317)
Q Consensus 104 ~~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~---~~e~v~~ 178 (317)
+...+++ |+|.|.| .|-+|.++++.|.+. |++|++..|......+...+ .++..-.....+ +++++++
T Consensus 15 ~~~~~~~-~~vlVTGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~ 87 (333)
T 2q1w_A 15 VPRGSHM-KKVFITGICGQIGSHIAELLLER------GDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGD 87 (333)
T ss_dssp ------C-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHH
T ss_pred eeecCCC-CEEEEeCCccHHHHHHHHHHHHC------CCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhc
Confidence 5577788 9999998 799999999999998 99887776653221111100 122110111333 3456777
Q ss_pred --CCEEEEccC
Q 021114 179 --SDLVLLLIS 187 (317)
Q Consensus 179 --ADvVILavP 187 (317)
.|+||-+..
T Consensus 88 ~~~D~vih~A~ 98 (333)
T 2q1w_A 88 LQPDAVVHTAA 98 (333)
T ss_dssp HCCSEEEECCC
T ss_pred cCCcEEEECce
Confidence 999998764
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.33 Score=46.07 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=54.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC------------------C-cccH---HHHHHC-
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------G-SRSF---AEARAA- 160 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~------------------~-~~s~---~~A~~~- 160 (317)
...|++ .+|.|||+|-+|..+|++|... |. ++.+.+.. + .+.. +...+.
T Consensus 31 q~~L~~-~~VlivG~GGlG~~ia~~La~~------Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~ln 103 (346)
T 1y8q_A 31 QKRLRA-SRVLLVGLKGLGAEIAKNLILA------GVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLN 103 (346)
T ss_dssp HHHHHT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTC
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHC
Confidence 467788 9999999999999999999998 87 45555321 0 0111 111121
Q ss_pred -Cceec--CCCc-CCHHhhcCcCCEEEEccCCchHHHHHHHHHhc
Q 021114 161 -GFTEE--NGTL-GDIYETISGSDLVLLLISDAAQADNYEKIFSC 201 (317)
Q Consensus 161 -G~~~~--~~~~-~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~ 201 (317)
++..+ .... ...++.+++.|+||.++-.......+++....
T Consensus 104 p~v~v~~~~~~~~~~~~~~~~~~dvVv~~~d~~~~r~~ln~~~~~ 148 (346)
T 1y8q_A 104 PMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK 148 (346)
T ss_dssp TTSEEEEECSCGGGCCHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred CCeEEEEEecccCcchHHHhcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 21110 0001 12457789999999987665555566665443
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.42 E-value=0.23 Score=46.52 Aligned_cols=92 Identities=21% Similarity=0.135 Sum_probs=58.9
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-HCCceecCCCcCCH---HhhcCcCCEEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEENGTLGDI---YETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-~~G~~~~~~~~~~~---~e~v~~ADvVIL 184 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++..++ ++..+.++ +.|...- -...+. .++....|+|+-
T Consensus 180 ~g-~~VlV~GaG~vG~~a~qlak~~------Ga~Vi~~~~~-~~~~~~~~~~lGa~~v-i~~~~~~~~~~~~~g~D~vid 250 (357)
T 2cf5_A 180 PG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSS-NKKREEALQDLGADDY-VIGSDQAKMSELADSLDYVID 250 (357)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEESS-TTHHHHHHTTSCCSCE-EETTCHHHHHHSTTTEEEEEE
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHHcCCcee-eccccHHHHHHhcCCCCEEEE
Confidence 68 9999999999999999999998 9887655544 34455666 6775310 001222 223346799998
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
++..... +++....++++-.++..+
T Consensus 251 ~~g~~~~---~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 251 TVPVHHA---LEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp CCCSCCC---SHHHHTTEEEEEEEEECS
T ss_pred CCCChHH---HHHHHHHhccCCEEEEeC
Confidence 8875321 334445666666665544
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.34 E-value=0.75 Score=40.98 Aligned_cols=44 Identities=9% Similarity=-0.013 Sum_probs=33.6
Q ss_pred CcccccccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 99 DLFKLLPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 99 w~f~~~~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|..+.....++| +++.|.| .|-+|.++++.|.+. |++|++..|+
T Consensus 20 ~~~~~~~~~l~~-k~vlITGasggIG~~la~~L~~~------G~~V~~~~r~ 64 (272)
T 1yb1_A 20 GHMPKRRKSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDIN 64 (272)
T ss_dssp -----CCCCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred cccCCcccccCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEEcC
Confidence 444444677999 9999998 678999999999999 9998776665
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.29 Score=45.14 Aligned_cols=92 Identities=21% Similarity=0.272 Sum_probs=58.4
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| ++|.|+|. |.+|..+++.++.. |.+|+...++ ++..+.+++.|.... +....+..+.+ ...|
T Consensus 145 ~g-~~vlV~Ga~ggiG~~~~~~a~~~------G~~Vi~~~~~-~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d 216 (333)
T 1wly_A 145 PG-DYVLIHAAAGGMGHIMVPWARHL------GATVIGTVST-EEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVD 216 (333)
T ss_dssp TT-CEEEETTTTSTTHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEE
T ss_pred CC-CEEEEECCccHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCe
Confidence 46 89999995 99999999999998 9987655544 444556666664210 11112222222 2478
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+||-++.. ..+++....++++..++..+
T Consensus 217 ~vi~~~g~----~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 217 VVYDSIGK----DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp EEEECSCT----TTHHHHHHTEEEEEEEEECC
T ss_pred EEEECCcH----HHHHHHHHhhccCCEEEEEe
Confidence 88888875 33455566677766665544
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.1 Score=44.11 Aligned_cols=98 Identities=15% Similarity=0.189 Sum_probs=66.4
Q ss_pred ccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc--cHHHHHH-CC-------ceecC
Q 021114 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARA-AG-------FTEEN 166 (317)
Q Consensus 107 ~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~--s~~~A~~-~G-------~~~~~ 166 (317)
.++| ++|+|.|+ .+-...+++.|.+. |.+|.+++..-.. ......+ .+ +..
T Consensus 332 ~~~~-~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~------g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-- 402 (481)
T 2o3j_A 332 TVTD-KKIAIFGFAFKKNTGDTRESSAIHVIKHLMEE------HAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITV-- 402 (481)
T ss_dssp CCTT-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEE--
T ss_pred ccCC-CeEEEEeeeeCCCCCccccChHHHHHHHHHHC------CCEEEEECCCCCchhhHHHHHhhhccccccCceee--
Confidence 5789 99999997 34566777777777 9887655432211 1112221 11 221
Q ss_pred CCcCCHHhhcCcCCEEEEccCCchHHHH-HHHHHhcCCCCcEEEEecCch
Q 021114 167 GTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 167 ~~~~~~~e~v~~ADvVILavP~~~~~~v-l~ei~~~lk~gaiVi~~~Gv~ 215 (317)
..+..|+++++|.|++++.-.+...+ ++++...|+...+|+|..++.
T Consensus 403 --~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~ 450 (481)
T 2o3j_A 403 --ESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLIL 450 (481)
T ss_dssp --ESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCS
T ss_pred --cCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCC
Confidence 24778899999999999998776552 557777888777888998863
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.5 Score=46.18 Aligned_cols=71 Identities=15% Similarity=0.113 Sum_probs=49.6
Q ss_pred ccCCCCEEEEEec-----c---chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHH----HHHCCceecCCCcC
Q 021114 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLG 170 (317)
Q Consensus 107 ~l~GikkIGIIG~-----G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~----A~~~G~~~~~~~~~ 170 (317)
.|+| +||+|||. | ++..|++..+... |+++.+.... .++..+. +.+.|... ....
T Consensus 188 ~l~G-lkva~vgd~~~~~G~~nnVa~Sli~~~~~l------G~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i--~~~~ 258 (399)
T 3q98_A 188 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSF--RQVT 258 (399)
T ss_dssp GGTT-CEEEEECCCCSSCCCCTHHHHHHHHHHGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEE--EEES
T ss_pred ccCC-CEEEEEEecccccCcchHHHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHHHHcCCEE--EEEc
Confidence 4788 89999974 4 6889999999888 9988776543 1222222 33455321 0156
Q ss_pred CHHhhcCcCCEEEEcc
Q 021114 171 DIYETISGSDLVLLLI 186 (317)
Q Consensus 171 ~~~e~v~~ADvVILav 186 (317)
|++|++++||+|..-+
T Consensus 259 d~~eav~~aDvVytd~ 274 (399)
T 3q98_A 259 SMEEAFKDADIVYPKS 274 (399)
T ss_dssp CHHHHHTTCSEEEECC
T ss_pred CHHHHhCCCCEEEecC
Confidence 9999999999999865
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=91.21 E-value=0.56 Score=44.04 Aligned_cols=74 Identities=9% Similarity=0.042 Sum_probs=49.7
Q ss_pred cccCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCE
Q 021114 106 DAFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
..|+| .+|++||= +++..|++..+... .|+++.+.....- .....+.+.|... ....+++|+++++|+
T Consensus 145 g~l~g-l~va~vGD~~~~rva~Sl~~~~~~~-----~g~~v~~~~P~~~~~~~~~~~~~g~~~--~~~~d~~eav~~aDv 216 (299)
T 1pg5_A 145 NTIDG-LVFALLGDLKYARTVNSLLRILTRF-----RPKLVYLISPQLLRARKEILDELNYPV--KEVENPFEVINEVDV 216 (299)
T ss_dssp SCSTT-CEEEEEECCSSCHHHHHHHHHGGGS-----CCSEEEEECCGGGCCCHHHHTTCCSCE--EEESCGGGTGGGCSE
T ss_pred CCcCC-cEEEEECCCCCCchHHHHHHHHHhC-----CCCEEEEECCchhcCCHHHHHHcCCeE--EEeCCHHHHhcCCCE
Confidence 45889 99999997 58999999887653 1788776654321 1111233455321 014689999999999
Q ss_pred EEEccC
Q 021114 182 VLLLIS 187 (317)
Q Consensus 182 VILavP 187 (317)
|....=
T Consensus 217 vyt~~~ 222 (299)
T 1pg5_A 217 LYVTRI 222 (299)
T ss_dssp EEEECC
T ss_pred EEeCCc
Confidence 988654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=91.19 E-value=0.5 Score=42.13 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=60.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhc--CcCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v--~~ADvV 182 (317)
+| ++|.-||+|. | .++..+.+. |.+ +++.+.++...+.+++ .|... .-...+..+.+ ...|+|
T Consensus 120 ~~-~~VLDiGcG~-G-~l~~~la~~------g~~-v~gvDi~~~~v~~a~~n~~~~~~~v-~~~~~d~~~~~~~~~fD~V 188 (254)
T 2nxc_A 120 PG-DKVLDLGTGS-G-VLAIAAEKL------GGK-ALGVDIDPMVLPQAEANAKRNGVRP-RFLEGSLEAALPFGPFDLL 188 (254)
T ss_dssp TT-CEEEEETCTT-S-HHHHHHHHT------TCE-EEEEESCGGGHHHHHHHHHHTTCCC-EEEESCHHHHGGGCCEEEE
T ss_pred CC-CEEEEecCCC-c-HHHHHHHHh------CCe-EEEEECCHHHHHHHHHHHHHcCCcE-EEEECChhhcCcCCCCCEE
Confidence 56 8999999999 3 345556666 765 4677776666655554 34210 00124555543 357999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+...+.....++++++...|+||..++++
T Consensus 189 v~n~~~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 189 VANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EECCcHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 98766555567888999999998887654
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=91.11 E-value=0.37 Score=46.41 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=48.5
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHH----HHHCCceecCCCcCCHHhhcC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~----A~~~G~~~~~~~~~~~~e~v~ 177 (317)
.|+| .||+||| .+++..|++..+... |+++.+...+. +.-.+. +.+.|...+ ...|++ +++
T Consensus 150 ~l~g-lkva~vGD~~rva~Sl~~~~~~~------G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~--~~~d~~-av~ 219 (355)
T 4a8p_A 150 KLED-CKVVFVGDATQVCFSLGLITTKM------GMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFL--VTDDAS-SVE 219 (355)
T ss_dssp CGGG-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEE--EECCGG-GGT
T ss_pred CCCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EECCHH-HHc
Confidence 6888 9999999 578999999999888 99887664432 122222 334453210 146888 999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
++|+|..-+
T Consensus 220 ~aDVVytd~ 228 (355)
T 4a8p_A 220 GADFLYTDV 228 (355)
T ss_dssp TCSEEEECC
T ss_pred CCCEEEecc
Confidence 999999743
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.33 Score=46.00 Aligned_cols=69 Identities=7% Similarity=-0.070 Sum_probs=41.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--e-----EEEEecCCc--ccHHHHHH--C-C--ceecCCCcCCHHhhc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-----VKVGLRKGS--RSFAEARA--A-G--FTEENGTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~-----Vivg~r~~~--~s~~~A~~--~-G--~~~~~~~~~~~~e~v 176 (317)
+||.|+| .|.+|.+++..|... |+ + +.+.+.... .....+.+ . . +...-....+..+.+
T Consensus 4 ~kV~V~GaaG~VG~~la~~L~~~------~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~~~~~~~~~~~~~~ 77 (333)
T 5mdh_A 4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAF 77 (333)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHT
T ss_pred eEEEEECCCCHHHHHHHHHHHhC------CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcccCCEEEcCCcHHHh
Confidence 6899999 899999999999876 54 2 444443211 11111211 1 1 110000124677889
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
++||+||++.
T Consensus 78 ~daDvVvitA 87 (333)
T 5mdh_A 78 KDLDVAILVG 87 (333)
T ss_dssp TTCSEEEECC
T ss_pred CCCCEEEEeC
Confidence 9999999975
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1.4 Score=39.02 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=56.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhhcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYETISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e~v~~ADvVI 183 (317)
+| .+|.-||+|. |.-....++.. |.+| ++.+.++...+.+++. |.... .-...+..+.-...|+|+
T Consensus 64 ~~-~~vLDiGcG~-G~~~~~l~~~~------~~~v-~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~fD~v~ 134 (287)
T 1kpg_A 64 PG-MTLLDVGCGW-GATMMRAVEKY------DVNV-VGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFDEPVDRIV 134 (287)
T ss_dssp TT-CEEEEETCTT-SHHHHHHHHHH------CCEE-EEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCCCCCSEEE
T ss_pred Cc-CEEEEECCcc-cHHHHHHHHHc------CCEE-EEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCeeEEE
Confidence 56 8999999998 33222233355 6654 5777666555555442 21100 001234444446789998
Q ss_pred Ec-----cCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 184 LL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 184 La-----vP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
.. +++.....+++++...||||..+++
T Consensus 135 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~ 166 (287)
T 1kpg_A 135 SIGAFEHFGHERYDAFFSLAHRLLPADGVMLL 166 (287)
T ss_dssp EESCGGGTCTTTHHHHHHHHHHHSCTTCEEEE
T ss_pred EeCchhhcChHHHHHHHHHHHHhcCCCCEEEE
Confidence 75 4444556788999999999887653
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.18 Score=49.68 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=31.7
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.+|+| ++|+|.|.|++|...|+.|.+. |.+|+...+.+
T Consensus 208 ~~l~g-~~vaVqG~GnVG~~~a~~L~~~------GakvVavsD~~ 245 (421)
T 2yfq_A 208 IKMED-AKIAVQGFGNVGTFTVKNIERQ------GGKVCAIAEWD 245 (421)
T ss_dssp CCGGG-SCEEEECCSHHHHHHHHHHHHT------TCCEEECCBCC
T ss_pred CCccC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEEEecC
Confidence 37899 9999999999999999999998 98876333433
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=90.91 E-value=0.25 Score=44.46 Aligned_cols=64 Identities=11% Similarity=0.129 Sum_probs=37.9
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCc--CCEEEEccC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~--ADvVILavP 187 (317)
|+|.|.|. |.+|..+++.|.+. |++|++..|+... .......+.+ ..++.+++++ .|+||-+..
T Consensus 3 ~~vlVtGatG~iG~~l~~~L~~~------g~~V~~~~r~~~~--~~~~~~Dl~d----~~~~~~~~~~~~~d~vih~A~ 69 (315)
T 2ydy_A 3 RRVLVTGATGLLGRAVHKEFQQN------NWHAVGCGFRRAR--PKFEQVNLLD----SNAVHHIIHDFQPHVIVHCAA 69 (315)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEC------------------------CHHHHHHHCCSEEEECC-
T ss_pred CeEEEECCCcHHHHHHHHHHHhC------CCeEEEEccCCCC--CCeEEecCCC----HHHHHHHHHhhCCCEEEECCc
Confidence 89999996 99999999999998 9988766654321 0011111211 1244556664 899998764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 317 | ||||
| d1qmga2 | 226 | c.2.1.6 (A:82-307) Class II ketol-acid reductoisom | 1e-95 | |
| d1np3a2 | 182 | c.2.1.6 (A:1-182) Class I ketol-acid reductoisomer | 6e-43 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Score = 280 bits (718), Expect = 1e-95
Identities = 189/226 (83%), Positives = 210/226 (92%)
Query: 68 TPFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQA 127
+ DF++SVFKK+ ++L+ DE+IVRGGR+LF LLPDAF GI QIGVIGWGSQ PAQA
Sbjct: 1 SATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQA 60
Query: 128 QNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187
QNL+DSL EAKSD+VVK+GLRKGS SFAEARAAGF+EENGTLGD++ETISGSDLVLLLIS
Sbjct: 61 QNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLIS 120
Query: 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247
D+AQADNYEK+FS MKPNSILGLSHGFLLGHLQS+G DFPKNI VIAVCPKGMGPSVRRL
Sbjct: 121 DSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPKNISVIAVCPKGMGPSVRRL 180
Query: 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293
YVQGKE+NGAGINSSFAVHQDVDGRAT+VALGWS+ALGSPFTFATT
Sbjct: 181 YVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Score = 144 bits (364), Expect = 6e-43
Identities = 56/175 (32%), Positives = 89/175 (50%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NL+D S + V VGLR GS + A+A A G D+
Sbjct: 18 KVAIIGYGSQGHAHACNLKD------SGVDVTVGLRSGSATVAKAEAHGLKV-----ADV 66
Query: 173 YETISGSDLVLLLISDAAQADNYEKIF-SCMKPNSILGLSHGFLLGHLQSIGLDFPKNIG 231
++ +D+V++L D Q Y++ +K + L +HGF + + Q ++
Sbjct: 67 KTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQV---VPRADLD 123
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI + PK G +VR +V+G I A++QD G A NVAL ++ +G
Sbjct: 124 VIMIAPKAPGHTVRSEFVKGGG-----IPDLIAIYQDASGNAKNVALSYACGVGG 173
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 317 | |||
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 100.0 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 100.0 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.88 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.86 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.85 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.81 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.7 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.65 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.56 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.56 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.51 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.48 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 99.47 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.44 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.43 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.4 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.39 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.39 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.36 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.33 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 99.33 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.29 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 99.26 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.16 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.13 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.09 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 98.91 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 98.85 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 98.81 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.74 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 98.7 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 98.69 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.44 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.13 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.06 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 98.02 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 97.91 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.9 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.88 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 97.85 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 97.72 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.7 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.65 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 97.62 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.59 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.56 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.48 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 97.45 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 97.44 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 97.41 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.39 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.36 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.35 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.35 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 97.24 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 97.22 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 97.19 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.18 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 97.18 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.18 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.16 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.12 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 97.07 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 97.06 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.04 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.02 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.99 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 96.97 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 96.95 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.93 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.88 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 96.85 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 96.83 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.83 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.83 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.81 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.8 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 96.76 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.74 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.7 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 96.67 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 96.64 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.63 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.58 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 96.51 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 96.46 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 96.46 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.46 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.45 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 96.36 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 96.35 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 96.33 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.33 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.31 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 96.28 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.27 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.21 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.2 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.18 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.12 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.1 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.09 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 96.07 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 96.06 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.06 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 96.02 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 96.02 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.02 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 95.97 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.84 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 95.81 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 95.8 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 95.79 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.75 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.74 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 95.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.52 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.41 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.35 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.31 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 95.27 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 95.05 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 94.83 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 94.77 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.69 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 94.55 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 94.53 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 94.42 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.32 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.31 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 94.25 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 94.24 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 94.21 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.21 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.18 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 94.0 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 93.94 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.88 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 93.71 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.67 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 93.59 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 93.49 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 93.42 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.32 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 93.28 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 93.23 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 93.23 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 93.17 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 92.93 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 92.85 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 92.85 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 92.82 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 92.78 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 92.77 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 92.76 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 92.74 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 92.7 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.65 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 92.56 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 92.55 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 92.53 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.51 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 92.51 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 92.47 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 92.47 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.36 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.28 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 92.24 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 92.17 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 92.05 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 91.9 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 91.75 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 91.73 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 91.7 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 91.59 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 91.39 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 91.31 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.31 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 91.3 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 91.3 | |
| d2h1qa1 | 251 | Hypothetical protein Dhaf_3308 {Desulfitobacterium | 91.25 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.22 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 91.14 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 91.07 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 91.01 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 91.01 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 90.98 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 90.89 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 90.78 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 90.77 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 90.62 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 90.48 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 90.44 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.37 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 90.25 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.24 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 90.23 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 90.22 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 90.08 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 89.98 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 89.92 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 89.9 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 89.81 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.78 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 89.76 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.75 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 89.64 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.55 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 89.44 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 89.41 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 89.26 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 89.22 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 89.19 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.17 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 88.88 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 88.37 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 88.31 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 88.24 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 88.22 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 88.17 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 88.15 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 88.06 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 87.91 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 87.66 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 87.52 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 87.13 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 87.13 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.09 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 87.09 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 87.06 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 86.67 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 86.51 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 86.35 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 86.34 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 86.03 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 85.94 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 85.92 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 85.89 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 85.68 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 85.61 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 85.51 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 85.35 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 85.35 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 85.3 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 84.94 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 84.59 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 84.27 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 84.14 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 83.77 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 83.69 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 83.66 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 83.44 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 82.43 | |
| d1ebfa1 | 168 | Homoserine dehydrogenase {Baker's yeast (Saccharom | 81.81 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 81.73 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 81.69 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 81.64 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 81.46 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 81.46 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 81.08 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 81.01 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 80.86 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 80.84 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 80.55 | |
| d1euca1 | 130 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 80.31 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 80.07 |
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=100.00 E-value=6.3e-47 Score=341.31 Aligned_cols=225 Identities=84% Similarity=1.312 Sum_probs=207.8
Q ss_pred ccccccccchhhhhhcccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 69 PFLLDFETSVFKKDAISLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 69 ~~~~~f~~~~~~~~~~~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
+.+++||+++|++++++|.+.+|+|+++|||.|+++.+.|+|+|||+|||+|+||.++|+|||++-.+.++|.+|+++.|
T Consensus 2 ~~~~~f~~~~~~~~~~~~~~~~e~i~~~~r~~f~~~~~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr 81 (226)
T d1qmga2 2 ATTFDFDSSVFKKEKVTLSGHDEYIVRGGRNLFPLLPDAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLR 81 (226)
T ss_dssp CSCCCCCCSSSCCEEEEETTEEEEEEECCGGGGGGHHHHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEEC
T ss_pred CccccchheeeEEEEEeeCCceeEEEecccchhhhhHHHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeC
Confidence 56799999999999999999999999999999999889999989999999999999999999997222223678999999
Q ss_pred CCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCC
Q 021114 149 KGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPK 228 (317)
Q Consensus 149 ~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~ 228 (317)
.+++++++|++.|+...+.++.+.+|++++||+|++++||..|.++++++.++||+|+.|..+|||++.+.+..+..+|+
T Consensus 82 ~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe~Q~~vy~~I~p~Lk~G~~L~FaHGFnI~~~~~~~~~~p~ 161 (226)
T d1qmga2 82 KGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDSAQADNYEKVFSHMKPNSILGLSHGFLLGHLQSLGQDFPK 161 (226)
T ss_dssp TTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHHHHHHHHHHHHHHSCTTCEEEESSSHHHHHHHHHTCCCCT
T ss_pred CCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchHHHHHHHHHHHHhcCCCceeeecchhhhhhceeeecccCC
Confidence 99999999999999754445568999999999999999999999999999999999999999999999776654456789
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecC
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT 293 (317)
+++|+++.|++||+.+|+.|++||.++|.|.+|+|+++||.++++++++++|+.++|+.++++||
T Consensus 162 dvdVimVAPKgPGh~VR~~Y~~Gk~~~G~GVP~LiAV~QD~sG~A~~~alayA~aIG~g~~~eTt 226 (226)
T d1qmga2 162 NISVIAVCPKGMGPSVRRLYVQGKEVNGAGINSSFAVHQDVDGRATDVALGWSIALGSPFTFATT 226 (226)
T ss_dssp TSEEEEEEESSCHHHHHHHHHHHTTTTCCCCCEEEEEEECSSSCHHHHHHHHHHHHTCSEEEECC
T ss_pred CceEEEECCCCCCchHHHHHHcccccCCCCceeEEEEEECCCCcHHHHHHHHHHhCCCCceeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999997
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=1.3e-33 Score=246.64 Aligned_cols=169 Identities=36% Similarity=0.588 Sum_probs=159.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
...|++ |+|+|||+|++|.+.|+|||++ |++|+++.|++++++++|++.|+. +.+.+|+++.||+|++
T Consensus 11 l~~ik~-k~IaViGYGsQG~AhAlNLrDS------G~~V~VGLr~gs~s~~~A~~~Gf~-----v~~~~eA~~~aDiim~ 78 (182)
T d1np3a2 11 LSIIQG-KKVAIIGYGSQGHAHACNLKDS------GVDVTVGLRSGSATVAKAEAHGLK-----VADVKTAVAAADVVMI 78 (182)
T ss_dssp HHHHHT-SCEEEECCSHHHHHHHHHHHHT------TCCEEEECCTTCHHHHHHHHTTCE-----EECHHHHHHTCSEEEE
T ss_pred hHHHCC-CEEEEEeeCcHhHHHHhhhhhc------CCCEEEEcCCCCccHHHHhhhccc-----cccHHHHhhhcCeeee
Confidence 467899 9999999999999999999999 999999999999999999999998 4699999999999999
Q ss_pred ccCCchHHHHHH-HHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 185 LISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 185 avP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
++||..+.++++ ++.++||+|+.|..+|||++.+-+ ..+|++++++++.|++|++.+|++|+.| .|+++++
T Consensus 79 L~PD~~q~~vy~~~I~p~lk~g~~L~FaHGfnIh~~~---I~pp~~vdV~mvAPKgpG~~VR~~y~~G-----~Gvp~l~ 150 (182)
T d1np3a2 79 LTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQ---VVPRADLDVIMIAPKAPGHTVRSEFVKG-----GGIPDLI 150 (182)
T ss_dssp CSCHHHHHHHHHHHTGGGCCTTCEEEESCCHHHHTTS---SCCCTTCEEEEEEESSCSHHHHHHHHTT-----CCCCEEE
T ss_pred ecchHHHHHHHHHhhhhhcCCCcEEEEeccceEEeee---eecCCCCceEeeccccccchhHHHhhcC-----CccceEE
Confidence 999999999997 799999999999999999986633 4778999999999999999999999998 8999999
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCCc--EEecC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSPF--TFATT 293 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~~--~~~tT 293 (317)
+++||.++++.+++++|..++|+.| +++||
T Consensus 151 AV~qD~sg~A~~~alayA~~iG~~raGvi~TT 182 (182)
T d1np3a2 151 AIYQDASGNAKNVALSYACGVGGGRTGIIETT 182 (182)
T ss_dssp EEEECSSSCHHHHHHHHHHHTTHHHHCEEECC
T ss_pred EEEeCCCccHHHHHHHHHHHhCcCccceEecC
Confidence 9999999999999999999999988 78887
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.88 E-value=3.7e-23 Score=175.40 Aligned_cols=165 Identities=13% Similarity=0.071 Sum_probs=128.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISD 188 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~v~~ADvVILavP~ 188 (317)
||+|+|||+|+||.++|++|++. |+. .+++++++.+..+.+++.|+.+ ....+.++ ...++|+|++++|+
T Consensus 1 Mk~I~IIG~G~mG~sla~~L~~~------g~~~~I~~~D~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~dlIila~p~ 72 (171)
T d2g5ca2 1 MQNVLIVGVGFMGGSFAKSLRRS------GFKGKIYGYDINPESISKAVDLGIID--EGTTSIAKVEDFSPDFVMLSSPV 72 (171)
T ss_dssp CCEEEEESCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHTTSCS--EEESCGGGGGGTCCSEEEECSCH
T ss_pred CCEEEEEccCHHHHHHHHHHHhc------CCCeEEEEEECChHHHHHHHHhhcch--hhhhhhhhhhccccccccccCCc
Confidence 57899999999999999999998 863 3567777788889999999863 22334443 44689999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
+...++++++.++++++++|+|+++++....+.....++ .+||+.|| +++.+ ...++.+++..++|.++++||+.+
T Consensus 73 ~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~--~~~i~~hP-m~G~e-~sG~~~a~~~Lf~g~~~il~p~~~ 148 (171)
T d2g5ca2 73 RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG--KRFVGGHP-IAGTE-KSGVEYSLDNLYEGKKVILTPTKK 148 (171)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG--GGEECEEE-ECCCS-CCSGGGCCSSTTTTCEEEECCCSS
T ss_pred hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhc--cccccccc-ccccc-cccHHHHHHHhhCCCeEEEecCCC
Confidence 999999999999999999999999875322211111233 37999999 34443 223445666667789999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 021114 269 VDGRATNVALGWSVALGSP 287 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG~~ 287 (317)
++++.++.++.||+.+|++
T Consensus 149 ~~~~~~~~v~~~~~~lG~~ 167 (171)
T d2g5ca2 149 TDKKRLKLVKRVWEDVGGV 167 (171)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHcCCE
Confidence 9999999999999999954
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.86 E-value=7.3e-22 Score=167.13 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=122.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|||||||+|+||.++|++|++. |++|+. ++++.+..+.+.+.|..++ ..+..|++++||+||+++|++..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~------g~~V~~-~d~~~~~~~~a~~~~~~~~---~~~~~~~~~~~DiIilavp~~~~ 70 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRR------GHYLIG-VSRQQSTCEKAVERQLVDE---AGQDLSLLQTAKIIFLCTPIQLI 70 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEE-ECSCHHHHHHHHHTTSCSE---EESCGGGGTTCSEEEECSCHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHC------CCEEEE-EECCchHHHHHHHhhccce---eeeecccccccccccccCcHhhh
Confidence 6899999999999999999999 999765 4565667788889887631 34555789999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCH
Q 021114 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ 271 (317)
.++++++.+.++++++|+++++++........... .+++..||... ++. ..+..++...+.+.++++++....++
T Consensus 71 ~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~---~~~~~~h~~~~-~~~-~g~~~a~~~l~~~~~~il~~~~~~~~ 145 (165)
T d2f1ka2 71 LPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLW---SGFIGGHPMAG-TAA-QGIDGAEENLFVNAPYVLTPTEYTDP 145 (165)
T ss_dssp HHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHS---TTCEEEEECCC-CSC-SSGGGCCTTTTTTCEEEEEECTTCCH
T ss_pred hhhhhhhhhhcccccceeeccccchHHHHHHHHhh---cccccceeeec-ccc-cchhhhcccccCCCeEEEEeCCCCCH
Confidence 89999999999999999999887532221100121 35788998432 221 11222333334567899999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 021114 272 RATNVALGWSVALGSP 287 (317)
Q Consensus 272 ea~e~a~~l~~alG~~ 287 (317)
++++.++.+|+.+|++
T Consensus 146 ~~~~~v~~l~~~lG~~ 161 (165)
T d2f1ka2 146 EQLACLRSVLEPLGVK 161 (165)
T ss_dssp HHHHHHHHHHGGGTCE
T ss_pred HHHHHHHHHHHHhCCE
Confidence 9999999999999975
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.85 E-value=8.6e-22 Score=166.44 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=120.1
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|||||||+|+||.+++++|.+. |++++++.|+.++..+.+.+.|+.. ..+++|++++||+|+|++||+..
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~------~~~i~v~~r~~~~~~~l~~~~g~~~----~~~~~~~~~~~dvIilavkp~~~ 70 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQT------PHELIISGSSLERSKEIAEQLALPY----AMSHQDLIDQVDLVILGIKPQLF 70 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTS------SCEEEEECSSHHHHHHHHHHHTCCB----CSSHHHHHHTCSEEEECSCGGGH
T ss_pred CEEEEEeccHHHHHHHHHHHhC------CCeEEEEcChHHhHHhhccccceee----echhhhhhhccceeeeecchHhH
Confidence 6899999999999999999998 9999888877555555556677764 56899999999999999999776
Q ss_pred HHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCC
Q 021114 192 ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~ 270 (317)
.+++ +.++++++|+ +++|+++..+++ .++++.+++|+|||+|... | .|++. ++.....+
T Consensus 71 ~~vl----~~l~~~~~iis~~agi~~~~l~~---~l~~~~~ivr~mPN~~~~v-------~-----~g~~~-~~~~~~~~ 130 (152)
T d2ahra2 71 ETVL----KPLHFKQPIISMAAGISLQRLAT---FVGQDLPLLRIMPNMNAQI-------L-----QSSTA-LTGNALVS 130 (152)
T ss_dssp HHHH----TTSCCCSCEEECCTTCCHHHHHH---HHCTTSCEEEEECCGGGGG-------T-----CEEEE-EEECTTCC
T ss_pred HHHh----hhcccceeEecccccccHHHHHh---hhcccccchhhccchhhhc-------C-----ccceE-EEeCCCCC
Confidence 5554 5577788776 778998888776 5567789999999998766 3 55666 67778889
Q ss_pred HHHHHHHHHHHHHcCCC
Q 021114 271 GRATNVALGWSVALGSP 287 (317)
Q Consensus 271 ~ea~e~a~~l~~alG~~ 287 (317)
++..+.++.+++.+|..
T Consensus 131 ~~~~~~v~~l~~~~G~~ 147 (152)
T d2ahra2 131 QELQARVRDLTDSFGST 147 (152)
T ss_dssp HHHHHHHHHHHHTTEEE
T ss_pred HHHHHHHHHHHHhCCCE
Confidence 99999999999999954
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.81 E-value=1.3e-20 Score=158.28 Aligned_cols=146 Identities=14% Similarity=0.233 Sum_probs=112.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|||||||+|+||.+++++|.+. | +++.+++|+.++..+.+.+.|+.. ..+. +.++++|+|||++||+.
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~------~~~~i~v~~r~~~~~~~l~~~~~~~~----~~~~-~~v~~~Div~lavkP~~ 69 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQ------GGYRIYIANRGAEKRERLEKELGVET----SATL-PELHSDDVLILAVKPQD 69 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------CSCEEEEECSSHHHHHHHHHHTCCEE----ESSC-CCCCTTSEEEECSCHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHC------CCCcEEEEeCChhHHHHhhhhccccc----cccc-ccccccceEEEecCHHH
Confidence 6899999999999999999888 7 677766665444334455567763 3344 45788999999999877
Q ss_pred HHHHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 191 QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
..++++++.+ .+++++ .++|+++..+++ .++...+++|.|||+|... + +|.+. ++...+.
T Consensus 70 ~~~v~~~l~~---~~~~viS~~ag~~~~~l~~---~l~~~~~iir~mpn~p~~~-------~-----~g~t~-~~~~~~~ 130 (152)
T d1yqga2 70 MEAACKNIRT---NGALVLSVAAGLSVGTLSR---YLGGTRRIVRVMPNTPGKI-------G-----LGVSG-MYAEAEV 130 (152)
T ss_dssp HHHHHTTCCC---TTCEEEECCTTCCHHHHHH---HTTSCCCEEEEECCGGGGG-------T-----CEEEE-EECCTTS
T ss_pred HHHhHHHHhh---cccEEeecccCCCHHHHHH---HhCcCcceEeecccchhHh-------c-----CCcEE-EEeCCCC
Confidence 7777666532 355554 789999888876 6677788999999999765 3 56777 6777788
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 021114 270 DGRATNVALGWSVALGSP 287 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~ 287 (317)
+++..+.++.+|+.+|..
T Consensus 131 ~~~~~~~v~~l~~~~G~~ 148 (152)
T d1yqga2 131 SETDRRIADRIMKSVGLT 148 (152)
T ss_dssp CHHHHHHHHHHHHTTEEE
T ss_pred CHHHHHHHHHHHHhCCCE
Confidence 899999999999999943
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=1.1e-16 Score=133.38 Aligned_cols=143 Identities=16% Similarity=0.137 Sum_probs=108.1
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++||+||| +|+||+++|++|++. |++|.++++... .+.++.+.++|++++++|..
T Consensus 9 ~~kI~iIGg~G~mG~~la~~L~~~------G~~V~~~d~~~~------------------~~~~~~~~~~~~v~~~~~~~ 64 (152)
T d2pv7a2 9 IHKIVIVGGYGKLGGLFARYLRAS------GYPISILDREDW------------------AVAESILANADVVIVSVPIN 64 (152)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHTT------TCCEEEECTTCG------------------GGHHHHHTTCSEEEECSCGG
T ss_pred CCeEEEEcCCCHHHHHHHHHHHHc------CCCcEecccccc------------------cccchhhhhccccccccchh
Confidence 38999999 999999999999999 999877765432 13456788999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCC
Q 021114 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (317)
Q Consensus 190 ~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~ 269 (317)
+..+++.++.++++++++++|+++++....+......+ .+||+.||. .+++. .+ ..|...++++..+
T Consensus 65 ~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~--~~~v~~hP~-~Gp~~-----~~----~~g~~~v~~~g~~- 131 (152)
T d2pv7a2 65 LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHT--GAVLGLHPM-FGADI-----AS----MAKQVVVRCDGRF- 131 (152)
T ss_dssp GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS--SEEEEEEEC-SCTTC-----SC----CTTCEEEEEEEEC-
T ss_pred hheeeeecccccccCCceEEEecccCHHHHHHHHHHcc--CCEEEeccc-CCCcc-----cc----cCCcEEEEecCCC-
Confidence 99999999999999999999999986322221111333 368999994 34431 11 1456777777665
Q ss_pred CHHHHHHHHHHHHHcCCCcEEec
Q 021114 270 DGRATNVALGWSVALGSPFTFAT 292 (317)
Q Consensus 270 ~~ea~e~a~~l~~alG~~~~~~t 292 (317)
.++.+.++.+|+.+| .++++|
T Consensus 132 -~~~~~~~~~ll~~~G-a~v~et 152 (152)
T d2pv7a2 132 -PERYEWLLEQIQIWG-AKIYQT 152 (152)
T ss_dssp -GGGTHHHHHHHHHTT-CEEEEC
T ss_pred -HHHHHHHHHHHHHhC-CEEEeC
Confidence 567899999999999 455554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.65 E-value=5.1e-16 Score=131.04 Aligned_cols=149 Identities=17% Similarity=0.191 Sum_probs=108.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
|||||||+|+||.++|++|.+. |++|+++++. .+..+...+.|... ..+++|+++++|+|++++|+..+
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~------G~~V~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~d~ii~~v~~~~~ 69 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKA------GYSLVVSDRN-PEAIADVIAAGAET----ASTAKAIAEQCDVIITMLPNSPH 69 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHTTCEE----CSSHHHHHHHCSEEEECCSSHHH
T ss_pred CEEEEEehhHHHHHHHHHHHHC------CCeEEEEeCC-cchhHHHHHhhhhh----cccHHHHHhCCCeEEEEcCCHHH
Confidence 6899999999999999999999 9998766554 55567777788775 67999999999999999998877
Q ss_pred HH-HH---HHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEE
Q 021114 192 AD-NY---EKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (317)
Q Consensus 192 ~~-vl---~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iit 264 (317)
.+ ++ +.+.+.+++|++|+|++..... .+.+ .....+++|+.....+- +. .-+.| .-. +.
T Consensus 70 v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vdapv~gg-~~---~a~~g-------~l~-~~ 135 (161)
T d1vpda2 70 VKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISD--ALKAKGVEMLDAPVSGG-EP---KAIDG-------TLS-VM 135 (161)
T ss_dssp HHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHTTTCEEEECCEESH-HH---HHHHT-------CEE-EE
T ss_pred HHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHH--HHHHcCCceecccccCC-hh---HHhcC-------CeE-EE
Confidence 65 65 3588999999999998876432 2221 12245788887644331 11 11123 223 33
Q ss_pred eccCCCHHHHHHHHHHHHHcCCC
Q 021114 265 VHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 265 p~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+..+ +++.+.++.+++.+|..
T Consensus 136 ~gG~--~~~~~~~~~il~~~~~~ 156 (161)
T d1vpda2 136 VGGD--KAIFDKYYDLMKAMAGS 156 (161)
T ss_dssp EESC--HHHHHHHHHHHHTTEEE
T ss_pred EcCC--HHHHHHHHHHHHHhcCc
Confidence 4443 78999999999999853
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.56 E-value=1.2e-15 Score=126.68 Aligned_cols=145 Identities=13% Similarity=0.098 Sum_probs=86.9
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD 193 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~ 193 (317)
|||||+|+||.+|+++|++. +..+.+++|+.++..+.+.+.+.. ..+++|+++++|+||+++||+++.+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~------~~~~~v~~R~~~~~~~l~~~~~~~-----~~~~~~~~~~~DiVil~v~d~~i~~ 70 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDR------YEIGYILSRSIDRARNLAEVYGGK-----AATLEKHPELNGVVFVIVPDRYIKT 70 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----------CCCEECSSHHHHHHHHHHTCCC-----CCSSCCCCC---CEEECSCTTTHHH
T ss_pred EEEEeCcHHHHHHHHHHHhC------CCEEEEEeCChhhhcchhhccccc-----ccchhhhhccCcEEEEeccchhhhH
Confidence 79999999999999999765 543346666654444444444443 4578899999999999999998877
Q ss_pred HHHHHHhcCCCCcEEEEecCc-hhhhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccCCCHH
Q 021114 194 NYEKIFSCMKPNSILGLSHGF-LLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGR 272 (317)
Q Consensus 194 vl~ei~~~lk~gaiVi~~~Gv-~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~e 272 (317)
+++++. +++++++++++. ....++. ......||..+....... + .......++...| ++
T Consensus 71 v~~~l~---~~~~ivi~~s~~~~~~~l~~--------~~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~gd--~~ 130 (153)
T d2i76a2 71 VANHLN---LGDAVLVHCSGFLSSEIFKK--------SGRASIHPNFSFSSLEKA---L----EMKDQIVFGLEGD--ER 130 (153)
T ss_dssp HHTTTC---CSSCCEEECCSSSCGGGGCS--------SSEEEEEECSCC--CTTG---G----GCGGGCCEEECCC--TT
T ss_pred HHhhhc---ccceeeeecccchhhhhhhh--------hccccceeeeecccccch---h----hhccCcEEEEeCC--HH
Confidence 766542 478898877664 4433322 222334443322110000 0 0111222344443 57
Q ss_pred HHHHHHHHHHHcCCCcE
Q 021114 273 ATNVALGWSVALGSPFT 289 (317)
Q Consensus 273 a~e~a~~l~~alG~~~~ 289 (317)
+.+.++.|++.+|+..+
T Consensus 131 ~~~~~~~l~~~lG~~~~ 147 (153)
T d2i76a2 131 GLPIVKKIAEEISGKYF 147 (153)
T ss_dssp THHHHHHHHHHHCSCEE
T ss_pred HHHHHHHHHHHHCCcEE
Confidence 89999999999996543
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.56 E-value=1.6e-14 Score=121.91 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=109.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|+||||||+|+||.+||++|.+. |++|.++++. .+..+.+...|... ..++.|+++++|+|++++|+..
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~------g~~v~~~d~~-~~~~~~~~~~~~~~----~~~~~e~~~~~diii~~v~~~~ 69 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKA------GYLLNVFDLV-QSAVDGLVAAGASA----ARSARDAVQGADVVISMLPASQ 69 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHT------TCEEEEECSS-HHHHHHHHHTTCEE----CSSHHHHHTSCSEEEECCSCHH
T ss_pred CCEEEEEEEHHHHHHHHHHHHHC------CCeEEEEECc-hhhhhhhhhhhccc----cchhhhhccccCeeeecccchh
Confidence 68999999999999999999999 9998776655 45566777788875 5689999999999999999988
Q ss_pred HHH-HHH---HHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 191 QAD-NYE---KIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 191 ~~~-vl~---ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
..+ ++. ++.+.+++|++++|++.+... .+.+ ....++++|+. +|-.-++.. -+.| .-. +
T Consensus 70 ~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~--~~~~~gi~~~d-apv~Gg~~~---a~~G-------~l~-~ 135 (162)
T d3cuma2 70 HVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHA--AARERGLAMLD-APVSGGTAG---AAAG-------TLT-F 135 (162)
T ss_dssp HHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-CCEESCHHH---HHHT-------CEE-E
T ss_pred hHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHH--HHHHCCCcEEe-cccccCccc---cccC-------CeE-E
Confidence 765 554 478889999999998877432 2221 12235788886 353333321 1233 333 3
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.+..+ .++.+.++.+++.+|..
T Consensus 136 ~~gG~--~~~~~~~~~il~~~~~~ 157 (162)
T d3cuma2 136 MVGGD--AEALEKARPLFEAMGRN 157 (162)
T ss_dssp EEESC--HHHHHHHHHHHHHHEEE
T ss_pred EecCC--HHHHHHHHHHHHHHcCc
Confidence 34443 68899999999999854
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.51 E-value=6.8e-15 Score=129.55 Aligned_cols=157 Identities=17% Similarity=0.108 Sum_probs=107.9
Q ss_pred cccchhhhhhcCCCcccc-cccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFKL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~~-~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +++|.|.+.. ...+|.| ++|||||+|.||..+|+.|+.+ |++|+++++.... .....++.
T Consensus 19 ~~~~~~~-~~~~~~~w~~~~g~el~g-k~vgIiG~G~IG~~va~~l~~f------g~~V~~~d~~~~~---~~~~~~~~- 86 (197)
T d1j4aa1 19 DKAMDEK-VARHDLRWAPTIGREVRD-QVVGVVGTGHIGQVFMQIMEGF------GAKVITYDIFRNP---ELEKKGYY- 86 (197)
T ss_dssp HHHHHHH-HHTTBCCCTTCCBCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCH---HHHHTTCB-
T ss_pred cHHHHHH-HHhCCCCcCCCcCccccC-CeEEEecccccchhHHHhHhhh------cccccccCccccc---ccccceee-
Confidence 4455666 7888775532 3488999 9999999999999999999998 9998665543321 22234444
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~vV~v 235 (317)
..++++++++||+|++++|.+..++ +++ +.+..||+|++++-+ .|-.+ ..+++ +.......+|...
T Consensus 87 ----~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a~lDV~~~ 161 (197)
T d1j4aa1 87 ----VDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDS-GKIFGYAMDVYEG 161 (197)
T ss_dssp ----CSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESCCTT
T ss_pred ----eccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhc-ccchheeeecccc
Confidence 4689999999999999999998875 665 789999999999955 45422 22222 2222224566666
Q ss_pred ccCC----------CChhhHHHHhhcccccCCCceEEEEecc
Q 021114 236 CPKG----------MGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~----------pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|.. |-.....++.. -|+++|||-
T Consensus 162 Ep~~~~~~~~~~~~p~~~~~~L~~~--------~nviiTPHi 195 (197)
T d1j4aa1 162 EVGIFNEDWEGKEFPDARLADLIAR--------PNVLVTPKT 195 (197)
T ss_dssp CTTTTTSBCTTSCCSCHHHHHHHHC--------TTEEECSSC
T ss_pred CCcccccccccccCCccchhhhhcC--------CCEEeCccc
Confidence 6643 22333345543 478888874
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.48 E-value=2.5e-14 Score=124.21 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=88.0
Q ss_pred ccccchhhhhhcCCCcccccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 85 SLANRDEFIVRGGRDLFKLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 85 ~~~~~~e~~v~~G~w~f~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
++..|++. +++|+|........|.| ++|||||+|.||..+|+.++.+ |++|+++++...+ ....
T Consensus 18 ~i~~~~~~-~~~~~w~~~~~~~~l~g-k~vgIiG~G~IG~~va~~l~~~------g~~v~~~d~~~~~-------~~~~- 81 (181)
T d1qp8a1 18 RIIQYGEK-MKRGDYGRDVEIPLIQG-EKVAVLGLGEIGTRVGKILAAL------GAQVRGFSRTPKE-------GPWR- 81 (181)
T ss_dssp THHHHHHH-HHTTCCCCCSCCCCCTT-CEEEEESCSTHHHHHHHHHHHT------TCEEEEECSSCCC-------SSSC-
T ss_pred CHHHHHHH-HHcCCCCCCCCCCcccC-ceEEEeccccccccceeeeecc------ccccccccccccc-------ccee-
Confidence 35566777 89999976655567999 9999999999999999999999 9998766554221 1111
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEec
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~~ 212 (317)
...+++|++++||+|++++|.+..+. +++ +.++.||++++++.++
T Consensus 82 ---~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~ 128 (181)
T d1qp8a1 82 ---FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVG 128 (181)
T ss_dssp ---CBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECS
T ss_pred ---eeechhhhhhccchhhcccccccccccccccceeeeccccceEEecc
Confidence 14589999999999999999998875 675 8999999999999654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.47 E-value=3e-14 Score=124.90 Aligned_cols=157 Identities=19% Similarity=0.135 Sum_probs=109.6
Q ss_pred cccchhhhhhcCCCccc--------ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH
Q 021114 86 LANRDEFIVRGGRDLFK--------LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA 157 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--------~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A 157 (317)
+..+++. +|+|+|... ....+|.| ++|||||+|+||+.+|+.|+.+ |++|+++++..... ..
T Consensus 18 i~~~~~~-~~~g~w~~~~~~~~~~~~~~~eL~g-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~--~~ 87 (193)
T d1mx3a1 18 ATWLHQA-LREGTRVQSVEQIREVASGAARIRG-ETLGIIGLGRVGQAVALRAKAF------GFNVLFYDPYLSDG--VE 87 (193)
T ss_dssp HHHHHHH-HHTTCCCCSHHHHHHHTTTCCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSCTT--HH
T ss_pred HHHHHHH-HHcCCcccccccccccccCceeeeC-ceEEEeccccccccceeeeecc------ccceeeccCccccc--ch
Confidence 4556666 999999542 24688999 9999999999999999999998 99987666543332 23
Q ss_pred HHCCceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCC
Q 021114 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPK 228 (317)
Q Consensus 158 ~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~ 228 (317)
...++.. ..+++|++++||+|++++|.+..++ +++ +.+..||+|++++-+ .|-.+ ..+++ +.....
T Consensus 88 ~~~~~~~----~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-~~i~~a 162 (193)
T d1mx3a1 88 RALGLQR----VSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKE-GRIRGA 162 (193)
T ss_dssp HHHTCEE----CSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHH-TSEEEE
T ss_pred hhhcccc----ccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHc-CCceEE
Confidence 3345553 5689999999999999999998876 666 789999999999955 45422 23332 222223
Q ss_pred CccEEEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 229 ~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
..+|...+|...... .++. --|+++|||-
T Consensus 163 ~lDV~~~EP~~~~~~--~l~~--------~~nvi~TPHi 191 (193)
T d1mx3a1 163 ALDVHESEPFSFSQG--PLKD--------APNLICTPHA 191 (193)
T ss_dssp EESCCSSSSCCTTSS--TTTT--------CSSEEECSSC
T ss_pred EEEcCCCCCCCCCch--hHHc--------CCCEEEcCCc
Confidence 456666777432111 1222 1478888873
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.44 E-value=8.9e-14 Score=121.58 Aligned_cols=156 Identities=18% Similarity=0.171 Sum_probs=108.7
Q ss_pred cccchhhhhhcCCCcc----cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC
Q 021114 86 LANRDEFIVRGGRDLF----KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG 161 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f----~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G 161 (317)
+..+++. +|.|+|.. .+...++.| ++|||||+|.+|..+|+.++.+ |++++++++......... ..+
T Consensus 20 i~~~~~~-~r~g~w~~~~~~~~~~~~l~g-~tvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~~~~-~~~ 90 (191)
T d1gdha1 20 AGEGEKM-IRTRSWPGWEPLELVGEKLDN-KTLGIYGFGSIGQALAKRAQGF------DMDIDYFDTHRASSSDEA-SYQ 90 (191)
T ss_dssp HHHHHHH-HHTTCCCCCCTTTTCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECSSCCCHHHHH-HHT
T ss_pred HHHHHHH-HHcCCCCcCCccccccceecc-cceEEeecccchHHHHHHHHhh------ccccccccccccccchhh-ccc
Confidence 5566767 99999953 234578999 9999999999999999999998 999876655433222222 333
Q ss_pred ceecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccE
Q 021114 162 FTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGV 232 (317)
Q Consensus 162 ~~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~v 232 (317)
... ..++++++++||+|++++|.+..++ +++ +.+..||+|++++-+ .|-.+ ..+++ +.......+|
T Consensus 91 ~~~----~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~-g~i~~a~lDV 165 (191)
T d1gdha1 91 ATF----HDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEA-GRLAYAGFDV 165 (191)
T ss_dssp CEE----CSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHH-TSEEEEEESC
T ss_pred ccc----cCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHc-CCceEEEEEC
Confidence 332 4689999999999999999998875 776 799999999999954 46422 22332 2222234566
Q ss_pred EEeccCCCChhhHHHHhhcccccCCCceEEEEecc
Q 021114 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 233 V~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~ 267 (317)
...+|.. .. .++.. -|+++|||-
T Consensus 166 ~~~EP~~-~~---~l~~~--------~nvi~TPHi 188 (191)
T d1gdha1 166 FAGEPNI-NE---GYYDL--------PNTFLFPHI 188 (191)
T ss_dssp CTTTTSC-CT---TGGGC--------TTEEECSSC
T ss_pred CCCCCCC-Cc---hHHcC--------CCEEECCcc
Confidence 6677732 22 23332 468889884
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.43 E-value=8.1e-14 Score=120.94 Aligned_cols=153 Identities=18% Similarity=0.200 Sum_probs=109.4
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +++|.|... +...++.| +++||||+|.+|+.+|+.++.+ |++|+++++... .+.....++.
T Consensus 20 i~~~~~~-~~~~~W~~~~~~~~~l~~-k~vgiiG~G~IG~~va~~~~~f------g~~v~~~d~~~~--~~~~~~~~~~- 88 (184)
T d1ygya1 20 IPAADAS-LREHTWKRSSFSGTEIFG-KTVGVVGLGRIGQLVAQRIAAF------GAYVVAYDPYVS--PARAAQLGIE- 88 (184)
T ss_dssp HHHHHHH-HHTTCCCGGGCCBCCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEECTTSC--HHHHHHHTCE-
T ss_pred HHHHHHH-HHhCCCCccccccccccc-eeeeeccccchhHHHHHHhhhc------cceEEeecCCCC--hhHHhhcCce-
Confidence 4456666 899999653 34578999 9999999999999999999998 999865554422 2334445554
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~vV~v 235 (317)
..+++|++++||+|++++|.+..++ +++ +.+..||++++++-+ .|-.+ ..+++ +.......+|...
T Consensus 89 ----~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~-~~i~~a~lDV~~~ 163 (184)
T d1ygya1 89 ----LLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG-GHVRAAGLDVFAT 163 (184)
T ss_dssp ----ECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT-SSEEEEEESSCSS
T ss_pred ----eccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhc-CcEeEEEEeCCCC
Confidence 4589999999999999999999876 776 899999999999954 45422 22332 2222234566667
Q ss_pred ccCCCChhhHHHHhhcccccCCCceEEEEec
Q 021114 236 CPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (317)
Q Consensus 236 hPn~pg~~~r~lf~~G~e~~g~G~~~iitp~ 266 (317)
+|. +... ++.. .|+++|||
T Consensus 164 EP~-~~~~---l~~~--------~nviiTPH 182 (184)
T d1ygya1 164 EPC-TDSP---LFEL--------AQVVVTPH 182 (184)
T ss_dssp SSC-SCCG---GGGC--------TTEEECSS
T ss_pred CCC-CCch---HhcC--------CCEEECCC
Confidence 775 3222 3332 47888887
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.40 E-value=2.2e-13 Score=118.19 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=102.7
Q ss_pred cccchhhhhhcCCCccc---ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 86 LANRDEFIVRGGRDLFK---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~---~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+..+++. +++|+|... ....+|.| ++|||||+|.+|..+|+.|+.+ |++|+++++.. .........++
T Consensus 18 ~~~~~~~-~~~g~w~~~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~-~~~~~~~~~~~ 88 (188)
T d2naca1 18 YLPSHEW-ARKGGWNIADCVSHAYDLEA-MHVGTVAAGRIGLAVLRRLAPF------DVHLHYTDRHR-LPESVEKELNL 88 (188)
T ss_dssp HHHHHHH-HHTTCCCHHHHHTTCCCCTT-CEEEEECCSHHHHHHHHHHGGG------TCEEEEECSSC-CCHHHHHHHTC
T ss_pred HHHHHHH-HHhCCCCCcccCCcceeccc-cceeeccccccchhhhhhhhcc------CceEEEEeecc-ccccccccccc
Confidence 4556666 889999542 14578999 9999999999999999999999 99986665543 23334444555
Q ss_pred eecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCchh------hhhhhcccCCCCCccEE
Q 021114 163 TEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGFLL------GHLQSIGLDFPKNIGVI 233 (317)
Q Consensus 163 ~~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv~l------~~~~~~~~~l~~~i~vV 233 (317)
.. ..+++|++++||+|++++|.+..++ +++ +.+..||+|++|+-+ .|-.+ ..+++ +.......+|.
T Consensus 89 ~~----~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~-g~i~ga~lDV~ 163 (188)
T d2naca1 89 TW----HATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES-GRLAGYAGDVW 163 (188)
T ss_dssp EE----CSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT-TSEEEEEESCC
T ss_pred cc----cCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhC-CCceeEEEeCC
Confidence 53 5689999999999999999999876 776 899999999999954 45422 22332 22212235555
Q ss_pred EeccCCCCh
Q 021114 234 AVCPKGMGP 242 (317)
Q Consensus 234 ~vhPn~pg~ 242 (317)
..+|.....
T Consensus 164 ~~EP~~~~~ 172 (188)
T d2naca1 164 FPQPAPKDH 172 (188)
T ss_dssp SSSSCCTTC
T ss_pred CCCCCCCCC
Confidence 667765443
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.39 E-value=6.9e-13 Score=110.34 Aligned_cols=111 Identities=19% Similarity=0.201 Sum_probs=81.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|||||||+|+||.++|++|++. |++++++++..++.. ..+...++. .+++|+++++|+||+++|++.
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~------~~~~e~~~~~diIi~~v~~~~ 68 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSR------GVEVVTSLEGRSPSTIERARTVGVT------ETSEEDVYSCPVVISAVTPGV 68 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHT------TCEEEECCTTCCHHHHHHHHHHTCE------ECCHHHHHTSSEEEECSCGGG
T ss_pred CEEEEEcHHHHHHHHHHHHHHC------CCeEEEEcCchhHHHHHhhhccccc------ccHHHHHhhcCeEEEEecCch
Confidence 6899999999999999999999 999877776544332 333344444 378899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCch---hhhhhhcccCCCCCccEEEeccCCC
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSIGLDFPKNIGVIAVCPKGM 240 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~---l~~~~~~~~~l~~~i~vV~vhPn~p 240 (317)
..+++.++.+.+ +.+++|++... ...+.+ .++ +..++.....++
T Consensus 69 ~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~---~~~-~~~~~d~~v~g~ 115 (152)
T d1i36a2 69 ALGAARRAGRHV--RGIYVDINNISPETVRMASS---LIE-KGGFVDAAIMGS 115 (152)
T ss_dssp HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHH---HCS-SSEEEEEEECSC
T ss_pred HHHHHHhhcccC--CceeeccCcCCHHHHHHHHH---HHh-ccCCCcccccCC
Confidence 888888887776 56888887653 233333 343 345765555443
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=9.8e-14 Score=120.48 Aligned_cols=156 Identities=19% Similarity=0.158 Sum_probs=100.3
Q ss_pred cccchhhhhhcCCCccc-ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCcee
Q 021114 86 LANRDEFIVRGGRDLFK-LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~-~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (317)
+..+++. +++|.|... ....+|.| ++|||||+|.+|..+|+.++.+ |++|+++++...... .....
T Consensus 20 ~~~~~~~-~~~~~w~~~~~~~~~l~~-~~vgiiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~~-----~~~~~ 86 (188)
T d1sc6a1 20 VPEANAK-AHRGVGNKLAAGSFEARG-KKLGIIGYGHIGTQLGILAESL------GMYVYFYDIENKLPL-----GNATQ 86 (188)
T ss_dssp HHHHHHH-HHHTCCC-----CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCCCC-----TTCEE
T ss_pred hHHHHHH-HHhCCCcccccccccccc-eEEEEeecccchhhhhhhcccc------cceEeeccccccchh-----hhhhh
Confidence 4455666 788999653 24578999 9999999999999999999998 999877765432211 12222
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEE-ecCchh------hhhhhcccCCCCCccEEEe
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGL-SHGFLL------GHLQSIGLDFPKNIGVIAV 235 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~-~~Gv~l------~~~~~~~~~l~~~i~vV~v 235 (317)
..+++|++++||+|++++|.+..+. +++ +.++.||++++|+- +.|-.+ ..+++ +.......+|...
T Consensus 87 ----~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~-~~~~~a~lDV~~~ 161 (188)
T d1sc6a1 87 ----VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALAS-KHLAGAAIDVFPT 161 (188)
T ss_dssp ----CSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHT-TSEEEEEEEC---
T ss_pred ----hhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHc-CCceEEEEecCCC
Confidence 4589999999999999999998875 776 89999999999995 446322 22232 2222234566677
Q ss_pred ccCCCChhhH-HHHhhcccccCCCceEEEEecc
Q 021114 236 CPKGMGPSVR-RLYVQGKEINGAGINSSFAVHQ 267 (317)
Q Consensus 236 hPn~pg~~~r-~lf~~G~e~~g~G~~~iitp~~ 267 (317)
+|........ .+... -|+++|||-
T Consensus 162 EP~~~~~~~~~~l~~~--------~nv~~TPHi 186 (188)
T d1sc6a1 162 EPATNSDPFTSPLAEF--------DNVLLTPHI 186 (188)
T ss_dssp ------CTTTGGGTTC--------TTEEEECCC
T ss_pred CCCCcCCccchhHhcC--------CCEEEcCCc
Confidence 7753221111 12221 478899984
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.36 E-value=8.6e-13 Score=112.40 Aligned_cols=152 Identities=15% Similarity=0.062 Sum_probs=102.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec----CCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE----NGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~----~~~~~~~~e~v~~ADvVILavP 187 (317)
.+|||||+|+||.+||++|.+. |++|++++|+.+ ..+...+.+.... .....++.+++..+|++++++|
T Consensus 3 ~nIg~IGlG~MG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~ 75 (176)
T d2pgda2 3 ADIALIGLAVMGQNLILNMNDH------GFVVCAFNRTVS-KVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVK 75 (176)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSTH-HHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSC
T ss_pred CcEEEEeEhHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHhccccccccchhhhhhhhhhhcccceEEEecC
Confidence 5799999999999999999999 999887766654 3444444443210 0113456678899999999999
Q ss_pred CchHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEE
Q 021114 188 DAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (317)
Q Consensus 188 ~~~~~-~vl~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~ii 263 (317)
+.... ++++++.+.+++|+++++++..... .+.+ .....++.++- +|-.-+... . +.| . .++
T Consensus 76 ~~~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~--~~~~~g~~~ld-apvsGg~~~--A-~~G-------~-~~~ 141 (176)
T d2pgda2 76 AGQAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCR--DLKDKGILFVG-SGVSGGEDG--A-RYG-------P-SLM 141 (176)
T ss_dssp TTHHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHH--HHHHTTCEEEE-EEEESHHHH--H-HHC-------C-EEE
T ss_pred chHHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHH--HHHhcCCceec-cccccCccc--c-cCC-------c-EEE
Confidence 98765 5888999999999999998876432 2211 12234677775 342222221 1 223 4 333
Q ss_pred EeccCCCHHHHHHHHHHHHHcCCC
Q 021114 264 AVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 264 tp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
+..+ .+..+.++.+++.+|.+
T Consensus 142 -~gG~--~~~~~~~~~il~~~~~k 162 (176)
T d2pgda2 142 -PGGN--KEAWPHIKAIFQGIAAK 162 (176)
T ss_dssp -EEEC--TTTHHHHHHHHHHHSCB
T ss_pred -cCCC--HHHHHHHHHHHHHHhcc
Confidence 4444 46889999999999964
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.33 E-value=2.9e-13 Score=118.80 Aligned_cols=112 Identities=15% Similarity=0.179 Sum_probs=86.8
Q ss_pred cccchhhhhhcCCCccc--ccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 86 LANRDEFIVRGGRDLFK--LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 86 ~~~~~e~~v~~G~w~f~--~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+..+++. +++|.|... +...+|.| ++|||||+|.||..+|+.|+.+ |++|+++++..... ....+.
T Consensus 20 ~~~~~~~-~~~g~w~~~~~~~~~~l~~-ktvgIiG~G~IG~~va~~l~~f------g~~v~~~d~~~~~~----~~~~~~ 87 (199)
T d1dxya1 20 MGKVQAQ-LQAGDYEKAGTFIGKELGQ-QTVGVMGTGHIGQVAIKLFKGF------GAKVIAYDPYPMKG----DHPDFD 87 (199)
T ss_dssp HHHHHHH-HHTTCHHHHTCCCCCCGGG-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSS----CCTTCE
T ss_pred HHHHHHH-HHhCCCCcccCcccccccc-eeeeeeeccccccccccccccc------ceeeeccCCccchh----hhcchh
Confidence 4455656 889999542 23579999 9999999999999999999999 99987665543221 111222
Q ss_pred ecCCCcCCHHhhcCcCCEEEEccCCchHHH-HHH-HHHhcCCCCcEEEEe-cCc
Q 021114 164 EENGTLGDIYETISGSDLVLLLISDAAQAD-NYE-KIFSCMKPNSILGLS-HGF 214 (317)
Q Consensus 164 ~~~~~~~~~~e~v~~ADvVILavP~~~~~~-vl~-ei~~~lk~gaiVi~~-~Gv 214 (317)
..++++++++||+|++++|.+..++ +++ +.+..||+|++++-+ .|-
T Consensus 88 -----~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~ 136 (199)
T d1dxya1 88 -----YVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPN 136 (199)
T ss_dssp -----ECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTT
T ss_pred -----HHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHh
Confidence 4589999999999999999998876 665 789999999999954 454
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=2.2e-11 Score=105.73 Aligned_cols=156 Identities=15% Similarity=0.145 Sum_probs=117.0
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-----------HHCCceec--------------
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEE-------------- 165 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~-------------- 165 (317)
|++|+|||.|.||.++|..+... |++|+++++. ++..+.+ .+.+....
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAAT------GHTVVLVDQT-EDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLST 76 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHT
T ss_pred eEEEEEECcCHHHHHHHHHHHhC------CCcEEEEECC-hHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhh
Confidence 58999999999999999999999 9998776654 3222222 22232100
Q ss_pred CCCcCCHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCCh
Q 021114 166 NGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGP 242 (317)
Q Consensus 166 ~~~~~~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~ 242 (317)
-....+..+++++||+|+=++|.+-.. +++.++.+.+++++++. .++++.+..+.. .....-+|++.|+-.|.+
T Consensus 77 i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~HffnP~~ 153 (192)
T d1f0ya2 77 IATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIAN---ATTRQDRFAGLHFFNPVP 153 (192)
T ss_dssp EEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHT---TSSCGGGEEEEEECSSTT
T ss_pred ccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhhh---hccCHhHEEeeccccccC
Confidence 012457888999999999999988764 48999999999999986 667777777765 334456899999987766
Q ss_pred hhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 243 ~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
.+ .-.=++++..++++.++.+.++++.+|...+.
T Consensus 154 ~~--------------~lVEIv~g~~T~~~~i~~~~~~~~~lgk~pV~ 187 (192)
T d1f0ya2 154 VM--------------KLVEVIKTPMTSQKTFESLVDFSKALGKHPVS 187 (192)
T ss_dssp TC--------------CEEEEECCTTCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cc--------------cEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 52 12236789999999999999999999965543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.29 E-value=6.5e-12 Score=105.21 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=77.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-----------CCCcCCHHhhcCcCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-----------NGTLGDIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-----------~~~~~~~~e~v~~AD 180 (317)
|||+|||.|+||.++|..|.+. |++|.++.+. ++..+...+.|.... .....++.|+++++|
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~------G~~V~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD 74 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK------GQSVLAWDID-AQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDAD 74 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCS
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCEEEEEECC-HHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCC
Confidence 7999999999999999999999 9998877664 444555554442110 001357899999999
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+||+++|...+..+++++.++++++++|+.+.|.
T Consensus 75 ~iii~v~~~~~~~~~~~i~~~l~~~~~iv~~~g~ 108 (184)
T d1bg6a2 75 VILIVVPAIHHASIAANIASYISEGQLIILNPGA 108 (184)
T ss_dssp EEEECSCGGGHHHHHHHHGGGCCTTCEEEESSCC
T ss_pred EEEEEEchhHHHHHHHHhhhccCCCCEEEEeCCC
Confidence 9999999999999999999999999998888765
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=99.26 E-value=3.8e-11 Score=103.52 Aligned_cols=156 Identities=11% Similarity=0.092 Sum_probs=113.7
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-----------CCceecC--------CCcC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN--------GTLG 170 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~~--------~~~~ 170 (317)
.|++|+|||.|.||.++|..+... |++|++.++. ++..+.+.+ .+..... -...
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~------G~~V~l~D~~-~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 75 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASK------GTPILMKDIN-EHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPT 75 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHT------TCCEEEECSS-HHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEE
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC------CCeEEEEECC-HHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecc
Confidence 368999999999999999999999 9998766654 333332221 1111000 0011
Q ss_pred CHHhhcCcCCEEEEccCCchHH--HHHHHHHhcCCCCcEEE-EecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHH
Q 021114 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRL 247 (317)
Q Consensus 171 ~~~e~v~~ADvVILavP~~~~~--~vl~ei~~~lk~gaiVi-~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~l 247 (317)
+..+.+.++|+|+-++|-+-.. +++.++-+..+++++|. .+++..+..+.+ .+...-+|++.|+-.|.+.+
T Consensus 76 ~~~~~~~~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~---~~~~p~r~~g~Hf~nP~~~~--- 149 (186)
T d1wdka3 76 LSYGDFGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTISISLLAK---ALKRPENFVGMHFFNPVHMM--- 149 (186)
T ss_dssp SSSTTGGGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGG---GCSCGGGEEEEECCSSTTTC---
T ss_pred cccccccccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHH---hccCchheEeeccccCcccC---
Confidence 2234578999999999988764 48999999999999986 677887777765 33444689999997776652
Q ss_pred HhhcccccCCCceEE-EEeccCCCHHHHHHHHHHHHHcCCCcEE
Q 021114 248 YVQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSPFTF 290 (317)
Q Consensus 248 f~~G~e~~g~G~~~i-itp~~d~~~ea~e~a~~l~~alG~~~~~ 290 (317)
+.+ +.+..+++++.++.+.++++.+|...+.
T Consensus 150 ------------~lVEiv~~~~T~~~~~~~~~~~~~~lgk~pv~ 181 (186)
T d1wdka3 150 ------------PLVEVIRGEKSSDLAVATTVAYAKKMGKNPIV 181 (186)
T ss_dssp ------------CEEEEEECSSCCHHHHHHHHHHHHHTTCEEEE
T ss_pred ------------CeEEECCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 232 6789999999999999999999966553
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.16 E-value=6.9e-11 Score=98.48 Aligned_cols=143 Identities=13% Similarity=0.083 Sum_probs=95.1
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchHH
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~~ 192 (317)
||||||+|+||.+||++|.+. |+. ++++|..++..+...+.+... +..+.+.++|++++++|.....
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~------g~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~~~~v 68 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARR------FPT-LVWNRTFEKALRHQEEFGSEA------VPLERVAEARVIFTCLPTTREV 68 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTT------SCE-EEECSSTHHHHHHHHHHCCEE------CCGGGGGGCSEEEECCSSHHHH
T ss_pred eEEEEeHHHHHHHHHHHHHhC------CCE-EEEeCCHHHHHHHHHHcCCcc------cccccccceeEEEecccchhhh
Confidence 799999999999999999988 875 468887766555555555542 4456677899999999998776
Q ss_pred H-HHHHHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCceEEEEeccC
Q 021114 193 D-NYEKIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (317)
Q Consensus 193 ~-vl~ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~~iitp~~d 268 (317)
. ..+.+.+.++++.++++.+-... ..+.+ ..-..+++|+- +|-.=++. .=+.| .-. +-+..+
T Consensus 69 ~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~--~~~~~gi~~ld-apVsGg~~---~A~~G-------~L~-~~vgG~ 134 (156)
T d2cvza2 69 YEVAEALYPYLREGTYWVDATSGEPEASRRLAE--RLREKGVTYLD-APVSGGTS---GAEAG-------TLT-VMLGGP 134 (156)
T ss_dssp HHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHH--HHHTTTEEEEE-CCEESHHH---HHHHT-------CEE-EEEESC
T ss_pred hhhhccccccccccccccccccCCHHHHHHHHH--HHHHcCCeEEe-ccccCchh---hhccC-------CEE-EEEeCC
Confidence 4 55689999999999998876632 22222 11134677774 35221111 11223 223 334444
Q ss_pred CCHHHHHHHHHHHHHcC
Q 021114 269 VDGRATNVALGWSVALG 285 (317)
Q Consensus 269 ~~~ea~e~a~~l~~alG 285 (317)
.+..|.++-++. ++
T Consensus 135 --~~~~~~~~p~L~-~~ 148 (156)
T d2cvza2 135 --EEAVERVRPFLA-YA 148 (156)
T ss_dssp --HHHHHHHGGGCT-TE
T ss_pred --HHHHHHHHHHHH-hc
Confidence 678888887763 54
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.13 E-value=2e-10 Score=97.04 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=98.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-------CCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-------NGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-------~~~~~~~~e~v~~ADvVIL 184 (317)
|||||||+|+||.+||++|.+. |++|.+++|.. +..+...+.+.... .....++-..+..++.+++
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~------G~~V~~~dr~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEK------GFKVAVFNRTY-SKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALI 74 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHT------TCCEEEECSSH-HHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred CEEEEEeehHHHHHHHHHHHHC------CCeEEEEECCH-HHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEE
Confidence 7899999999999999999999 99987766553 33444444443210 0001123345678889999
Q ss_pred ccCCchHH-HHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhhHHHHhhcccccCCCce
Q 021114 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (317)
Q Consensus 185 avP~~~~~-~vl~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~~G~e~~g~G~~ 260 (317)
.+++.... .+++++...+++++++++++-.... .+.. ..-..++.++...-.+ .. ...+.| .
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~--~l~~~~~~~ldapv~g--~~--~~a~~g-------~- 140 (178)
T d1pgja2 75 LVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQ--QLEAAGLRFLGMGISG--GE--EGARKG-------P- 140 (178)
T ss_dssp CCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHH--HHHTTTCEEEEEEEES--HH--HHHHHC-------C-
T ss_pred eecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHH--HHhhcceeEecccccC--Cc--chhcCC-------c-
Confidence 99887765 5888999999999999988765321 2221 1124567787642212 11 122233 3
Q ss_pred EEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 261 ~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
. +.+..+ ++..+.++.+++.+|.+
T Consensus 141 ~-~mvgG~--~~~~~~v~pil~~~~~~ 164 (178)
T d1pgja2 141 A-FFPGGT--LSVWEEIRPIVEAAAAK 164 (178)
T ss_dssp E-EEEEEC--HHHHHHHHHHHHHHSCB
T ss_pred E-EEeeCC--HHHHHHHHHHHHHHhcc
Confidence 3 234443 68999999999999954
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.09 E-value=1.6e-10 Score=98.65 Aligned_cols=97 Identities=18% Similarity=0.171 Sum_probs=73.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceec---------CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE---------NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~---------~~~~~~~~e~v~~ADv 181 (317)
|||+|||.|+||.++|..|.+. |++|.++.|...+ ..+.-.+...... -....+++++++++|+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~------g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~ 74 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDN------GNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEV 74 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHH------CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSE
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccch
Confidence 7999999999999999999999 9999888764222 2222211111000 0013578899999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|++++|.+...++++++.++++++.+|+.+.|.
T Consensus 75 Ii~avps~~~~~~~~~l~~~l~~~~ii~~tkg~ 107 (180)
T d1txga2 75 VLLGVSTDGVLPVMSRILPYLKDQYIVLISKGL 107 (180)
T ss_dssp EEECSCGGGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred hhcccchhhhHHHHHhhccccccceecccccCc
Confidence 999999999999999999999988888777765
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.5e-09 Score=92.62 Aligned_cols=94 Identities=19% Similarity=0.184 Sum_probs=78.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
..|.| |+++|||+|.+|..+|+.++.. |++|++.+..+-+. -+|...|+. +.+++|+++.+|+|+++
T Consensus 20 ~~l~G-k~v~V~GyG~iG~g~A~~~rg~------G~~V~v~e~dp~~a-l~A~~dG~~-----v~~~~~a~~~adivvta 86 (163)
T d1li4a1 20 VMIAG-KVAVVAGYGDVGKGCAQALRGF------GARVIITEIDPINA-LQAAMEGYE-----VTTMDEACQEGNIFVTT 86 (163)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSCHHHH-HHHHHTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEeccccccHHHHHHHHhC------CCeeEeeecccchh-HHhhcCceE-----eeehhhhhhhccEEEec
Confidence 46889 9999999999999999999999 99988776654333 356678998 46899999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~ 215 (317)
+.... ++. +.++.||+|++|.-++.+.
T Consensus 87 TGn~~---vI~~eh~~~MKdgaIL~N~Ghfd 114 (163)
T d1li4a1 87 TGCID---IILGRHFEQMKDDAIVCNIGHFD 114 (163)
T ss_dssp SSCSC---SBCHHHHTTCCTTEEEEECSSST
T ss_pred CCCcc---chhHHHHHhccCCeEEEEecccc
Confidence 88643 343 7889999999999988773
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=98.85 E-value=3.5e-09 Score=91.40 Aligned_cols=151 Identities=15% Similarity=0.096 Sum_probs=91.8
Q ss_pred CCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC--------Cceec-C-CCcCCHHhhcCcC
Q 021114 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEE-N-GTLGDIYETISGS 179 (317)
Q Consensus 110 GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~--------G~~~~-~-~~~~~~~e~v~~A 179 (317)
-|+||+|||.|.+|.++|..|.+. |++|.++.|.. +..+.-.+. ++... + ....+++++++++
T Consensus 6 ~m~KI~ViGaG~wGtAlA~~La~~------g~~V~l~~r~~-~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~a 78 (189)
T d1n1ea2 6 YLNKAVVFGSGAFGTALAMVLSKK------CREVCVWHMNE-EEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGA 78 (189)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTT------EEEEEEECSCH-HHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTC
T ss_pred eeceEEEECCCHHHHHHHHHHHHc------CCeEEEEEecH-HHHHHHhhcccccccccccccccccccchhhhhccCCC
Confidence 347899999999999999999999 99988877643 222222111 11100 0 0145789999999
Q ss_pred CEEEEccCCchHHHHHHHHHhc-----CCCCcEEE-EecCchh-------hhhhhcccCCCCCccEEEeccCCCChhhHH
Q 021114 180 DLVLLLISDAAQADNYEKIFSC-----MKPNSILG-LSHGFLL-------GHLQSIGLDFPKNIGVIAVCPKGMGPSVRR 246 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~-----lk~gaiVi-~~~Gv~l-------~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~ 246 (317)
|+|++++|.+...++++++.++ ++++..|+ .+-|+.. +.+.+ .++.+.-.|..-|+.+ +
T Consensus 79 d~iiiavPs~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e---~~~~~~~~vlsGP~~A-----~ 150 (189)
T d1n1ea2 79 EIILFVIPTQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGE---FLPSPLLSVLAGPSFA-----I 150 (189)
T ss_dssp SCEEECSCHHHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTT---TSCGGGEEEEESSCCH-----H
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHH---HhcccceEEEecCCcH-----H
Confidence 9999999999888888876543 34555554 5567621 22222 3444322344455442 2
Q ss_pred HHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHH
Q 021114 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (317)
Q Consensus 247 lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~a 283 (317)
...+| .+..++... .+.+..+.+.++++.
T Consensus 151 Ev~~~-------~pt~~viAs-~~~~~a~~i~~lfst 179 (189)
T d1n1ea2 151 EVATG-------VFTCVSIAS-ADINVARRLQRIMST 179 (189)
T ss_dssp HHHTT-------CCEEEEEEC-SSHHHHHHHHHHHSC
T ss_pred HHHcC-------CCcEEEEEe-CCHHHHHHHHHHhCC
Confidence 22333 444344443 245666677777763
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=98.81 E-value=4.1e-09 Score=89.78 Aligned_cols=94 Identities=17% Similarity=0.224 Sum_probs=79.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.-|.| |++.|+|+|..|..+|+.+|.. |.+|++....+-+. -+|.-.||. +.+++|+++.+|++|.+
T Consensus 19 ~~laG-k~vvV~GYG~vGrG~A~~~rg~------Ga~V~V~E~DPi~a-lqA~mdGf~-----v~~~~~a~~~aDi~vTa 85 (163)
T d1v8ba1 19 FLISG-KIVVICGYGDVGKGCASSMKGL------GARVYITEIDPICA-IQAVMEGFN-----VVTLDEIVDKGDFFITC 85 (163)
T ss_dssp CCCTT-SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSCHHHH-HHHHTTTCE-----ECCHHHHTTTCSEEEEC
T ss_pred ceecC-CEEEEecccccchhHHHHHHhC------CCEEEEEecCchhh-HHHHhcCCc-----cCchhHccccCcEEEEc
Confidence 44789 9999999999999999999999 99998877654333 356668998 57999999999999999
Q ss_pred cCCchHHHHHH-HHHhcCCCCcEEEEecCch
Q 021114 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 186 vP~~~~~~vl~-ei~~~lk~gaiVi~~~Gv~ 215 (317)
|.... ++. +.+..||+|++|.-++.|.
T Consensus 86 TGn~~---vI~~~h~~~MKdgaIl~N~GHfd 113 (163)
T d1v8ba1 86 TGNVD---VIKLEHLLKMKNNAVVGNIGHFD 113 (163)
T ss_dssp CSSSS---SBCHHHHTTCCTTCEEEECSSTT
T ss_pred CCCCc---cccHHHHHHhhCCeEEEeccccc
Confidence 98755 443 7889999999999998874
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=3.4e-09 Score=86.85 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=70.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc---eecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF---TEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~---~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
|||+|||.|.||..+|..|.+. |++|.+..|....... ....+. ........+..+.+..+|+|++++|.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~------G~~V~~~~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka 73 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQ------GHEVQGWLRVPQPYCS-VNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA 73 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSCCSEEE-EEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCceEEEEcCHHHhhh-hccccCCccccccccccchhhhhcccceEEEeecc
Confidence 7999999999999999999999 9999887776432110 000010 00000123455677899999999999
Q ss_pred chHHHHHHHHHhcCCCCcEEE-EecCch
Q 021114 189 AAQADNYEKIFSCMKPNSILG-LSHGFL 215 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi-~~~Gv~ 215 (317)
.+..++++++.+++.++++|+ ...|+.
T Consensus 74 ~~~~~~~~~l~~~~~~~~~Iv~~qNG~~ 101 (167)
T d1ks9a2 74 WQVSDAVKSLASTLPVTTPILLIHNGMG 101 (167)
T ss_dssp GGHHHHHHHHHTTSCTTSCEEEECSSSC
T ss_pred cchHHHHHhhccccCcccEEeeccCccc
Confidence 998899999999998888766 556774
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=98.70 E-value=3.5e-08 Score=88.77 Aligned_cols=102 Identities=13% Similarity=0.128 Sum_probs=77.9
Q ss_pred cCCHHhhcCcCCEEEEccCCchH-HHHHHHHHhcCCCCcEEEEecCchhh---hhhhcccCCCCCccEEEeccCCCChhh
Q 021114 169 LGDIYETISGSDLVLLLISDAAQ-ADNYEKIFSCMKPNSILGLSHGFLLG---HLQSIGLDFPKNIGVIAVCPKGMGPSV 244 (317)
Q Consensus 169 ~~~~~e~v~~ADvVILavP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv~l~---~~~~~~~~l~~~i~vV~vhPn~pg~~~ 244 (317)
..|+.|++++||+||+++|...+ .++++++.+++++|++|+|++.++.. .+.+ ..-+++++|++.||..+ ++.
T Consensus 132 ~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e--~l~~kgi~vi~~hp~a~-pe~ 208 (242)
T d2b0ja2 132 TSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFK--DLGREDLNITSYHPGCV-PEM 208 (242)
T ss_dssp ESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHH--HTTCTTSEEEECBCSSC-TTT
T ss_pred ECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHH--hcccCCCEEECCCccCc-Ccc
Confidence 47899999999999999998765 46999999999999999999887532 2222 12345899999999553 221
Q ss_pred HHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCC
Q 021114 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (317)
Q Consensus 245 r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~ 287 (317)
.|..++ .....+++.++.++.+++.+|..
T Consensus 209 ------------~g~~li--~~~~aseE~iekv~elles~Gk~ 237 (242)
T d2b0ja2 209 ------------KGQVYI--AEGYASEEAVNKLYEIGKIARGK 237 (242)
T ss_dssp ------------CCCEEE--EESSSCHHHHHHHHHHHHHHHSC
T ss_pred ------------ccceEE--ecCCCCHHHHHHHHHHHHHHCCC
Confidence 234443 34467899999999999999964
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.69 E-value=4.3e-07 Score=78.06 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=96.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-------------------HHCCceecCCCcCCH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-------------------RAAGFTEENGTLGDI 172 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-------------------~~~G~~~~~~~~~~~ 172 (317)
|||+|||+|-+|.++|..|.+. |++|+ ++|.+++..+.. ...+... ...+.
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~------g~~V~-g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~---~~~~~ 70 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSAR------GHEVI-GVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLS---GTTDF 70 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHT------TCEEE-EECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEE---EESCH
T ss_pred CEEEEECCCHhHHHHHHHHHhC------CCcEE-EEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccc---cCCCH
Confidence 7899999999999999999999 99975 666655433221 1122111 14688
Q ss_pred HhhcCcCCEEEEccCCc---------h-HHHHHH---HHHhcCCCCcEEEEecCchhh-------h-hh-hcccCCCCCc
Q 021114 173 YETISGSDLVLLLISDA---------A-QADNYE---KIFSCMKPNSILGLSHGFLLG-------H-LQ-SIGLDFPKNI 230 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~---------~-~~~vl~---ei~~~lk~gaiVi~~~Gv~l~-------~-~~-~~~~~l~~~i 230 (317)
.+++++||++++|+|.. . ...+++ ++....+++++|++-+-+..+ . ++ ..+.....++
T Consensus 71 ~~~i~~~d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~ 150 (202)
T d1mv8a2 71 KKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDF 150 (202)
T ss_dssp HHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTB
T ss_pred HHHHhhCCEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccc
Confidence 89999999999999852 1 223444 445566788888766544211 1 11 1111222222
Q ss_pred cEEEeccC--CCChhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHHHHHHHcCCCcEEecC
Q 021114 231 GVIAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATT 293 (317)
Q Consensus 231 ~vV~vhPn--~pg~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~~l~~alG~~~~~~tT 293 (317)
.+..+|- .+|..+.++...- ..++.. .+++..+.++++++.+..+ ++.+|
T Consensus 151 -~~~~~PE~~~~G~a~~d~~~~~--------~iViG~---~~~~~~~~~~~ly~~i~~~-ii~~t 202 (202)
T d1mv8a2 151 -GVGTNPEFLRESTAIKDYDFPP--------MTVIGE---LDKQTGDLLEEIYRELDAP-IIRKT 202 (202)
T ss_dssp -EEEECCCCCCTTSHHHHHHSCS--------CEEEEE---SSHHHHHHHHHHHTTSSSC-EEEEE
T ss_pred -cchhhhhhhcccchhhhhcCCC--------eEEEEe---CCHHHHHHHHHHHHhcCCC-eEecC
Confidence 3566773 4455555544321 122222 2368899999999999753 55443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.44 E-value=3.7e-07 Score=76.49 Aligned_cols=98 Identities=18% Similarity=0.232 Sum_probs=72.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
..|++ ++|.|||.|.||..++++|... |. ++.+++|+.++..+.+.+.|... ..+.++.+.+.++|+||.
T Consensus 20 ~~l~~-~~ilviGaG~~g~~v~~~L~~~------g~~~i~v~nRt~~ka~~l~~~~~~~~--~~~~~~~~~l~~~Divi~ 90 (159)
T d1gpja2 20 GSLHD-KTVLVVGAGEMGKTVAKSLVDR------GVRAVLVANRTYERAVELARDLGGEA--VRFDELVDHLARSDVVVS 90 (159)
T ss_dssp SCCTT-CEEEEESCCHHHHHHHHHHHHH------CCSEEEEECSSHHHHHHHHHHHTCEE--CCGGGHHHHHHTCSEEEE
T ss_pred CCccc-CeEEEECCCHHHHHHHHHHHhc------CCcEEEEEcCcHHHHHHHHHhhhccc--ccchhHHHHhccCCEEEE
Confidence 46788 9999999999999999999999 87 58888887666667777777542 235678888999999999
Q ss_pred ccCCch--H-HHHHHHHHhcC--CCCcEEEEec
Q 021114 185 LISDAA--Q-ADNYEKIFSCM--KPNSILGLSH 212 (317)
Q Consensus 185 avP~~~--~-~~vl~ei~~~l--k~gaiVi~~~ 212 (317)
+++... + .+.+++....- +...+++|.+
T Consensus 91 atss~~~ii~~~~i~~~~~~r~~~~~~~iiDla 123 (159)
T d1gpja2 91 ATAAPHPVIHVDDVREALRKRDRRSPILIIDIA 123 (159)
T ss_dssp CCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECC
T ss_pred ecCCCCccccHhhhHHHHHhcccCCCeEEEeec
Confidence 998543 2 35666544332 2334667763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.13 E-value=1.2e-05 Score=64.01 Aligned_cols=92 Identities=15% Similarity=0.079 Sum_probs=60.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-CCceecCCCcCCHH---hh-cCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIY---ET-ISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-~G~~~~~~~~~~~~---e~-v~~ADvVILav 186 (317)
|+|.|+|+|.+|..+++.|.+. |++|++.+ .+++..+.+.+ .|...-.+...+.+ ++ ++++|.++.++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~------g~~v~vid-~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t 73 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEK------GHDIVLID-IDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVT 73 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEE-SCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCcceec-CChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccC
Confidence 7899999999999999999999 99876554 44444554443 35322112223333 22 68999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEE
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
++....-++..+...+.+..++..
T Consensus 74 ~~d~~N~~~~~~~k~~~~~~iI~~ 97 (132)
T d1lssa_ 74 GKEEVNLMSSLLAKSYGINKTIAR 97 (132)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CcHHHHHHHHHHHHHcCCceEEEE
Confidence 987654444445555555555543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.06 E-value=7.3e-06 Score=64.90 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=60.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhh-cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYET-ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~-v~~ADvVILavP 187 (317)
|++.|||+|.+|..+|+.|.+. |++|++.+ .+++..+.+.+.|...--+...+ ++++ ++++|.|+++++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~------g~~vvvid-~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~ 73 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRM------GHEVLAVD-INEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIG 73 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEE-SCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCeEEEec-CcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence 6799999999999999999999 99876554 45555666666664321111122 3333 789999999999
Q ss_pred CchHHHHHH-HHHhcCCCCcEEE
Q 021114 188 DAAQADNYE-KIFSCMKPNSILG 209 (317)
Q Consensus 188 ~~~~~~vl~-ei~~~lk~gaiVi 209 (317)
+.....++- .+........++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 74 ANIQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEE
T ss_pred chHHhHHHHHHHHHHcCCCcEEe
Confidence 877655443 3444443333333
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=98.02 E-value=1.1e-05 Score=66.44 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=58.1
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCC-cccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~-~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~ 189 (317)
++|||||+|.||.. ....++.. .+++++...+++ +...+.+.+.++.. ..+.++++++.|+|++++|+.
T Consensus 2 iri~iIG~G~~g~~~~~~~l~~~-----~~~~i~~v~d~~~~~~~~~~~~~~~~~----~~~~~~l~~~~D~V~I~tp~~ 72 (164)
T d1tlta1 2 LRIGVVGLGGIAQKAWLPVLAAA-----SDWTLQGAWSPTRAKALPICESWRIPY----ADSLSSLAASCDAVFVHSSTA 72 (164)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSC-----SSEEEEEEECSSCTTHHHHHHHHTCCB----CSSHHHHHTTCSEEEECSCTT
T ss_pred CEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEEechhHhhhhhhhcccccc----cccchhhhhhcccccccccch
Confidence 58999999999986 46666654 156665444444 33444555666643 568899999999999999999
Q ss_pred hHHHHHHHHHhc
Q 021114 190 AQADNYEKIFSC 201 (317)
Q Consensus 190 ~~~~vl~ei~~~ 201 (317)
.+.++....+..
T Consensus 73 ~h~~~~~~al~~ 84 (164)
T d1tlta1 73 SHFDVVSTLLNA 84 (164)
T ss_dssp HHHHHHHHHHHT
T ss_pred hccccccccccc
Confidence 988887765543
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=97.91 E-value=1.6e-05 Score=65.55 Aligned_cols=82 Identities=17% Similarity=0.135 Sum_probs=56.3
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVILavP~~ 189 (317)
+||||||+|.+|.. ....++.. .+.++++.++..+...+.+.+.+... ...+.+++++ +.|+|++++|+.
T Consensus 2 irvgiiG~G~~~~~~~~~~l~~~-----~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~ll~~~iD~V~I~tp~~ 73 (167)
T d1xeaa1 2 LKIAMIGLGDIAQKAYLPVLAQW-----PDIELVLCTRNPKVLGTLATRYRVSA---TCTDYRDVLQYGVDAVMIHAATD 73 (167)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTS-----TTEEEEEECSCHHHHHHHHHHTTCCC---CCSSTTGGGGGCCSEEEECSCGG
T ss_pred eEEEEEcCCHHHHHHHHHHHHhC-----CCcEEEEEECCHHHHHHHHHhccccc---ccccHHHhcccccceeccccccc
Confidence 58999999999976 45666554 14465544443334444555666542 2457777775 679999999999
Q ss_pred hHHHHHHHHHhc
Q 021114 190 AQADNYEKIFSC 201 (317)
Q Consensus 190 ~~~~vl~ei~~~ 201 (317)
.+.+++.+.+..
T Consensus 74 ~H~~~~~~al~~ 85 (167)
T d1xeaa1 74 VHSTLAAFFLHL 85 (167)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 999888766554
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.90 E-value=1.4e-05 Score=64.73 Aligned_cols=93 Identities=16% Similarity=0.103 Sum_probs=62.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec--CC--CcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NG--TLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~--~~--~~~~~~e~v~~ADvVILavP 187 (317)
|+|.|||.|.||..+|+.|.+. |++|++++|..++..+.+.+.+.... .. .....++.+...|+++.++|
T Consensus 3 K~IliiGaG~~G~~~a~~L~~~------g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~ 76 (182)
T d1e5qa1 3 KSVLMLGSGFVTRPTLDVLTDS------GIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP 76 (182)
T ss_dssp CEEEEECCSTTHHHHHHHHHTT------TCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence 8999999999999999999999 99999888875544444443332110 00 11234567889999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
............. .+..+++..-
T Consensus 77 ~~~~~~~~~~~~~---~~~~~~~~~~ 99 (182)
T d1e5qa1 77 YTFHATVIKSAIR---QKKHVVTTSY 99 (182)
T ss_dssp GGGHHHHHHHHHH---HTCEEECSSC
T ss_pred chhhhHHHHHHHh---hccceeeccc
Confidence 8766555443332 3455665543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.88 E-value=0.00013 Score=61.15 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=79.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec---------------CCCcCCHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---------------NGTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---------------~~~~~~~~e~v 176 (317)
|||+|||+|-+|.++|..+ +. |++| ++.|.+++..+.. ..|...- -....+..+.+
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~------g~~V-~g~Din~~~v~~l-~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~ 71 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SL------QNEV-TIVDILPSKVDKI-NNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAY 71 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TT------TSEE-EEECSCHHHHHHH-HTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred CEEEEECCChhHHHHHHHH-HC------CCcE-EEEECCHHHHHHH-hhcccccchhhHHHHhhhhhhhhhccchhhhhh
Confidence 7899999999999999876 57 8986 4777765544322 2222100 00123556677
Q ss_pred CcCCEEEEccCCchH-------HHHHH---HHHhcCCCCcEEEEecCchh---hhhhhcccCCCCCccEEEecc--CCCC
Q 021114 177 SGSDLVLLLISDAAQ-------ADNYE---KIFSCMKPNSILGLSHGFLL---GHLQSIGLDFPKNIGVIAVCP--KGMG 241 (317)
Q Consensus 177 ~~ADvVILavP~~~~-------~~vl~---ei~~~lk~gaiVi~~~Gv~l---~~~~~~~~~l~~~i~vV~vhP--n~pg 241 (317)
.++|+|++++|.... ...++ +.....+++.+++..+-+.. ..+.. .+.+ .. +...| ..+|
T Consensus 72 ~~~~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~---~~~~-~~-~~~~PE~i~~G 146 (196)
T d1dlja2 72 KEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQ---KFQT-DR-IIFSPEFLRES 146 (196)
T ss_dssp HHCSEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHH---HTTC-SC-EEECCCCCCTT
T ss_pred hccccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeee---ccch-hh-hccchhhcchh
Confidence 899999999985432 12222 22233456777766554422 22222 2222 22 33455 4455
Q ss_pred hhhHHHHhhcccccCCCceEEEEeccCCCHHHHHHHH
Q 021114 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVAL 278 (317)
Q Consensus 242 ~~~r~lf~~G~e~~g~G~~~iitp~~d~~~ea~e~a~ 278 (317)
....+.+..- -.++..++....+..+..+
T Consensus 147 ~ai~d~~~p~--------riv~G~~~~~~~~~~~~~~ 175 (196)
T d1dlja2 147 KALYDNLYPS--------RIIVSCEENDSPKVKADAE 175 (196)
T ss_dssp STTHHHHSCS--------CEEEECCTTSCHHHHHHHH
T ss_pred hhHhhccCCC--------EEEEeCCHhhHHHHHHHHH
Confidence 5555544431 2345555555555444443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.85 E-value=2.1e-05 Score=65.71 Aligned_cols=84 Identities=13% Similarity=0.131 Sum_probs=58.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhc--CcCCEEEEccCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETI--SGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v--~~ADvVILavP~ 188 (317)
.||||||+|.||...++.++.. + +.+++...+.+.+ ..+.+.+.++........+.++++ .+.|+|++++|+
T Consensus 2 iki~iIG~G~~g~~~~~~l~~~-~----~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 2 IRIGVMGCADIARKVSRAIHLA-P----NATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEEESCCTTHHHHHHHHHHC-T----TEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhC-C----CCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 5899999999999999998765 1 4566544444433 334455666532111246888887 467999999999
Q ss_pred chHHHHHHHHHh
Q 021114 189 AAQADNYEKIFS 200 (317)
Q Consensus 189 ~~~~~vl~ei~~ 200 (317)
..+.++..+.+.
T Consensus 77 ~~h~~~~~~~l~ 88 (184)
T d1ydwa1 77 SLHVEWAIKAAE 88 (184)
T ss_dssp GGHHHHHHHHHT
T ss_pred hhhcchhhhhhh
Confidence 998887766544
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=97.72 E-value=2.1e-05 Score=65.44 Aligned_cols=85 Identities=9% Similarity=0.169 Sum_probs=58.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCchH
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~~ 191 (317)
.||||||+|.||...++.+++. .+++++...+++.+. ....++.. ..+.++...+.|+|++++|+..+
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~-----~~~elvav~~~~~~~---~~~~~~~~----~~~~~~~~~~~D~Vvi~tp~~~h 71 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQ-----PDMDLVGIFSRRATL---DTKTPVFD----VADVDKHADDVDVLFLCMGSATD 71 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTC-----SSEEEEEEEESSSCC---SSSSCEEE----GGGGGGTTTTCSEEEECSCTTTH
T ss_pred ceEEEECChHHHHHHHHHHHhC-----CCcEEEEEEeccccc---cccccccc----chhhhhhccccceEEEeCCCccc
Confidence 5799999999999999999875 156655444443321 12233332 45777788999999999999988
Q ss_pred HHHHHHHHhcCCCCcEEEEe
Q 021114 192 ADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 192 ~~vl~ei~~~lk~gaiVi~~ 211 (317)
.++..+. ++.|.-++++
T Consensus 72 ~~~a~~a---L~aG~~vv~~ 88 (170)
T d1f06a1 72 IPEQAPK---FAQFACTVDT 88 (170)
T ss_dssp HHHHHHH---HTTTSEEECC
T ss_pred HHHHHHH---HHCCCcEEEe
Confidence 7766544 4456655543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.70 E-value=1.2e-05 Score=60.70 Aligned_cols=70 Identities=14% Similarity=0.159 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
+|+| |+|.|||+|..|.+.|+.|.+. |.+|++++++... ..+... .+.... .....++.+.+.|+||+.
T Consensus 2 ~~~~-K~v~ViGlG~sG~s~a~~L~~~------g~~v~~~D~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~d~vi~S 71 (93)
T d2jfga1 2 DYQG-KNVVIIGLGLTGLSCVDFFLAR------GVTPRVMDTRMTPPGLDKLP-EAVERH--TGSLNDEWLMAADLIVAS 71 (93)
T ss_dssp CCTT-CCEEEECCSHHHHHHHHHHHHT------TCCCEEEESSSSCTTGGGSC-TTSCEE--ESBCCHHHHHHCSEEEEC
T ss_pred CcCC-CEEEEEeECHHHHHHHHHHHHC------CCEEEEeeCCcCchhHHHHh-hcccee--ecccchhhhccCCEEEEC
Confidence 6889 9999999999999999999999 9998888775432 112111 222110 011224556778888875
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
-
T Consensus 72 P 72 (93)
T d2jfga1 72 P 72 (93)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.65 E-value=0.00013 Score=56.55 Aligned_cols=80 Identities=15% Similarity=0.096 Sum_probs=56.4
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-ceecCCCcCCHHhhcCcCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.-+|+| ++|.|||.|.+|.+-|+.|.++ |.+|++......+......+.+ +...... .+ ++-+.++|+|+
T Consensus 7 ~l~l~~-k~vlVvG~G~va~~ka~~ll~~------ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~dl~~~~lv~ 77 (113)
T d1pjqa1 7 FCQLRD-RDCLIVGGGDVAERKARLLLEA------GARLTVNALTFIPQFTVWANEGMLTLVEGP-FD-ETLLDSCWLAI 77 (113)
T ss_dssp EECCBT-CEEEEECCSHHHHHHHHHHHHT------TBEEEEEESSCCHHHHHHHTTTSCEEEESS-CC-GGGGTTCSEEE
T ss_pred EEEeCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEeccCChHHHHHHhcCCceeeccC-CC-HHHhCCCcEEe
Confidence 358999 9999999999999999999999 9988776655443333333333 3221111 12 34577899999
Q ss_pred EccCCchHHH
Q 021114 184 LLISDAAQAD 193 (317)
Q Consensus 184 LavP~~~~~~ 193 (317)
.++.+....+
T Consensus 78 ~at~d~~~n~ 87 (113)
T d1pjqa1 78 AATDDDTVNQ 87 (113)
T ss_dssp ECCSCHHHHH
T ss_pred ecCCCHHHHH
Confidence 9998877654
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=97.62 E-value=6.5e-05 Score=62.69 Aligned_cols=83 Identities=14% Similarity=0.129 Sum_probs=55.9
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCcccH-HHHHHCCceecCCCcCCHHhhcC--cCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP 187 (317)
.+|||||+|.+|.. .+..+++. . -.++++...+++.... +.+.+.+... ...+.+|+++ +.|+|++++|
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~-~---~~~~i~~v~d~~~~~~~~~~~~~~~~~---~~~~~~ell~~~~id~v~I~tp 76 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNL-S---HLFEITAVTSRTRSHAEEFAKMVGNPA---VFDSYEELLESGLVDAVDLTLP 76 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTT-T---TTEEEEEEECSSHHHHHHHHHHHSSCE---EESCHHHHHHSSCCSEEEECCC
T ss_pred cEEEEEcCCHHHHHHHHHHHHhC-C---CCeEEEEEEeccHhhhhhhhccccccc---eeeeeeccccccccceeecccc
Confidence 47999999999987 47777764 0 0245543444443333 3344455432 2578999885 5799999999
Q ss_pred CchHHHHHHHHHhc
Q 021114 188 DAAQADNYEKIFSC 201 (317)
Q Consensus 188 ~~~~~~vl~ei~~~ 201 (317)
+..+.+++.+.+..
T Consensus 77 ~~~h~~~~~~al~~ 90 (181)
T d1zh8a1 77 VELNLPFIEKALRK 90 (181)
T ss_dssp GGGHHHHHHHHHHT
T ss_pred cccccccccccccc
Confidence 99998888776554
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.56 E-value=2.4e-05 Score=66.36 Aligned_cols=94 Identities=11% Similarity=0.049 Sum_probs=66.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC---ceecCCCcCCHHhhcCcCCEEEEccC-
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDLVLLLIS- 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G---~~~~~~~~~~~~e~v~~ADvVILavP- 187 (317)
-++.|||.|.-|..-++.++.. |.+|.+.+.+ .+.+++..... ..........+++.+++||+||-++-
T Consensus 33 a~V~ViGaGvaG~~A~~~A~~l------GA~V~~~D~~-~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aali 105 (168)
T d1pjca1 33 GKVVILGGGVVGTEAAKMAVGL------GAQVQIFDIN-VERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLV 105 (168)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESC-HHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred cEEEEECCChHHHHHHHHHhhC------CCEEEEEeCc-HHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeec
Confidence 6999999999999999999988 9988766655 33343333321 11100111246788999999998764
Q ss_pred -CchHHHHHH-HHHhcCCCCcEEEEec
Q 021114 188 -DAAQADNYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 188 -~~~~~~vl~-ei~~~lk~gaiVi~~~ 212 (317)
-.....++. +....||||++|+|++
T Consensus 106 pG~~aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 106 PGRRAPILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCcccCeeecHHHHhhcCCCcEEEEee
Confidence 444455664 8899999999999876
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.48 E-value=0.00019 Score=58.73 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=44.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC----CceecCC-CcCCHHhhcCcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEENG-TLGDIYETISGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~~-~~~~~~e~v~~ADv 181 (317)
.+ +||+|||.|.+|.++|..|... |+ ++++.+...+.....+.+. -+...+. ......+.+++||+
T Consensus 5 ~~-~KI~IiGaG~vG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDv 77 (148)
T d1ldna1 5 GG-ARVVVIGAGFVGASYVFALMNQ------GIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADL 77 (148)
T ss_dssp TS-CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSE
T ss_pred CC-CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhcccee
Confidence 45 8999999999999999999988 75 5555444322222222221 1110000 01233467899999
Q ss_pred EEEccC
Q 021114 182 VLLLIS 187 (317)
Q Consensus 182 VILavP 187 (317)
|+++.-
T Consensus 78 vvitag 83 (148)
T d1ldna1 78 VVICAG 83 (148)
T ss_dssp EEECCS
T ss_pred EEEecc
Confidence 999653
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=97.45 E-value=0.00016 Score=62.38 Aligned_cols=74 Identities=19% Similarity=0.193 Sum_probs=57.1
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC-cCCEEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~-~ADvVI 183 (317)
...|+| ++|+|-|+|++|..+|+.|.+. |.+|++. +.+......+...|... .+.++++. +||+++
T Consensus 22 ~~~L~g-k~v~IqG~G~VG~~~A~~L~~~------Gakvvv~-d~d~~~~~~~~~~g~~~-----~~~~~~~~~~~DI~i 88 (201)
T d1c1da1 22 LGSLDG-LTVLVQGLGAVGGSLASLAAEA------GAQLLVA-DTDTERVAHAVALGHTA-----VALEDVLSTPCDVFA 88 (201)
T ss_dssp CCCSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTCEE-----CCGGGGGGCCCSEEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEe-cchHHHHHHHHhhcccc-----cCccccccccceeee
Confidence 457999 9999999999999999999999 9987654 45556667777777763 46667665 799988
Q ss_pred EccCCchH
Q 021114 184 LLISDAAQ 191 (317)
Q Consensus 184 LavP~~~~ 191 (317)
-|--...+
T Consensus 89 PcA~~~~I 96 (201)
T d1c1da1 89 PCAMGGVI 96 (201)
T ss_dssp ECSCSCCB
T ss_pred cccccccc
Confidence 76554444
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=5.1e-05 Score=63.00 Aligned_cols=95 Identities=21% Similarity=0.051 Sum_probs=61.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---CceecCCCcCCHHh-hcCcCCE
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDL 181 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e-~v~~ADv 181 (317)
..++| |+|.|||.|-.+.|++..|.+. |.++.+.+|+.++..+.+... +... ..+.++ ...++|+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~al~~~------g~~i~I~nRt~~ka~~l~~~~~~~~~~~----~~~~~~~~~~~~dl 82 (170)
T d1nyta1 14 FIRPG-LRILLIGAGGASRGVLLPLLSL------DCAVTITNRTVSRAEELAKLFAHTGSIQ----ALSMDELEGHEFDL 82 (170)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSHHHHHHHHHHTGGGSSEE----ECCSGGGTTCCCSE
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHhccc------ceEEEeccchHHHHHHHHHHHhhccccc----ccccccccccccce
Confidence 46788 9999999999999999999998 888888888755444444332 1111 112222 3467999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
||.++|.....+....-...++++.++.|+
T Consensus 83 iIN~Tp~G~~~~~~~~~~~~~~~~~~v~D~ 112 (170)
T d1nyta1 83 IINATSSGISGDIPAIPSSLIHPGIYCYDM 112 (170)
T ss_dssp EEECCSCGGGTCCCCCCGGGCCTTCEEEES
T ss_pred eecccccCcccCCCCCcHHHhccCcEEEEe
Confidence 999999876432111112335566666654
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=97.41 E-value=0.00025 Score=58.79 Aligned_cols=92 Identities=22% Similarity=0.246 Sum_probs=59.0
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCC-ceEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhc-----CcCCEE
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSD-IVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETI-----SGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G-~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~v-----~~ADvV 182 (317)
.||||||.|.+|+. +.+.|+.. . .+++...+++ .+..+.+.+.|+... ..+.++++ .+.|+|
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~------~~~el~avas~~~~~~~~~~a~~~~i~~~---~~~~d~l~~~~~~~~iDiV 75 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNA------KYLEMGAMVGIDAASDGLARAQRMGVTTT---YAGVEGLIKLPEFADIDFV 75 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHC------SSEEEEEEECSCTTCHHHHHHHHTTCCEE---SSHHHHHHHSGGGGGEEEE
T ss_pred cEEEEEcCcHHHHHHHHHHHhhC------CcceEEEEEecchhccchhhhhhcCCccc---ccceeeeeecccccccCEE
Confidence 58999999999986 56777665 3 3443333332 233467788887642 22334332 468999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++||...+.+... .....+.|+.|+|-++
T Consensus 76 f~ATpag~h~~~~~-~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 76 FDATSASAHVQNEA-LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp EECSCHHHHHHHHH-HHHHHCTTCEEEECST
T ss_pred EEcCCchhHHHhHH-HHHHHHcCCEEEEccc
Confidence 99999877654222 1223478999998765
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.39 E-value=0.00015 Score=62.04 Aligned_cols=94 Identities=13% Similarity=0.150 Sum_probs=65.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc--eecC-CCc-------------------
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF--TEEN-GTL------------------- 169 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~--~~~~-~~~------------------- 169 (317)
-++.|||.|..|..-++-.+.. |.+|.+.+.+ ....++.++.+- +..+ ...
T Consensus 30 a~VvViGaGvaG~~Aa~~A~~l------GA~V~v~D~~-~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 30 ARVLVFGVGVAGLQAIATAKRL------GAVVMATDVR-AATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-STTHHHHHHTTCEECCC-----------------------C
T ss_pred cEEEEEcCcHHHHHHHHHHHHc------CCEEEEEecc-HHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHH
Confidence 5899999999999999888888 9888766544 445666666652 1100 000
Q ss_pred ---CCHHhhcCcCCEEEEcc--CCchHHHHHH-HHHhcCCCCcEEEEec
Q 021114 170 ---GDIYETISGSDLVLLLI--SDAAQADNYE-KIFSCMKPNSILGLSH 212 (317)
Q Consensus 170 ---~~~~e~v~~ADvVILav--P~~~~~~vl~-ei~~~lk~gaiVi~~~ 212 (317)
..+.+.+++||+||-++ |-.....++. +..+.||||++|+|++
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 01334588999999764 4444455664 7899999999999876
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.36 E-value=0.00076 Score=55.10 Aligned_cols=94 Identities=13% Similarity=0.057 Sum_probs=66.8
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc--------CcC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI--------SGS 179 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v--------~~A 179 (317)
+| .+|.|+|.|.+|...++.++.. |...++..+.+++.++.|++.|+... +....+..+.. ..+
T Consensus 26 ~g-d~VlI~G~G~iG~~~~~~a~~~------G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 26 LG-HKVLVCGAGPIGMVTLLVAKAM------GAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CC-CEEEEECCCccHHHHHHHHHHc------CCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCc
Confidence 47 8999999999999999999998 98434555666777889999986321 11122443332 258
Q ss_pred CEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 180 DvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
|+||-++.... .++...+.++++..++..+
T Consensus 99 Dvvid~~G~~~---~~~~a~~~~~~gG~iv~~G 128 (171)
T d1pl8a2 99 EVTIECTGAEA---SIQAGIYATRSGGTLVLVG 128 (171)
T ss_dssp SEEEECSCCHH---HHHHHHHHSCTTCEEEECS
T ss_pred eEEEeccCCch---hHHHHHHHhcCCCEEEEEe
Confidence 99999998643 4566667788887776554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.35 E-value=0.00048 Score=56.62 Aligned_cols=69 Identities=13% Similarity=0.043 Sum_probs=44.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... ++ ++++.+.........+.. .+.........+.++.+++||+|+
T Consensus 8 ~KI~IIGaG~VG~~lA~~l~~~------~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVv 81 (154)
T d1pzga1 8 KKVAMIGSGMIGGTMGYLCALR------ELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVI 81 (154)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEE
Confidence 8999999999999999988887 75 555444333222222221 111100011245678899999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 82 ita 84 (154)
T d1pzga1 82 VTA 84 (154)
T ss_dssp ECC
T ss_pred Eec
Confidence 987
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.35 E-value=7.9e-05 Score=59.64 Aligned_cols=77 Identities=19% Similarity=0.158 Sum_probs=50.9
Q ss_pred CEEEEE-eccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---CceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVI-GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGII-G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|||+|| |.|.||.++|+.|.+. |++|+++.|+.++..+.+.+. +... .....+........+......+
T Consensus 1 Mki~vigGaG~iG~alA~~la~~------G~~V~l~~R~~e~~~~l~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 73 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATL------GHEIVVGSRREEKAEAKAAEYRRIAGDA-SITGMKNEDAAEACDIAVLTIP 73 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTT------TCEEEEEESSHHHHHHHHHHHHHHHSSC-CEEEEEHHHHHHHCSEEEECSC
T ss_pred CEEEEEeCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCCCc-eEEeeccccccchhhhhhhhee
Confidence 789999 8999999999999999 999998887644322222211 1110 0012345556667778888887
Q ss_pred CchHHHHH
Q 021114 188 DAAQADNY 195 (317)
Q Consensus 188 ~~~~~~vl 195 (317)
.....+.+
T Consensus 74 ~~~~~~~~ 81 (212)
T d1jaya_ 74 WEHAIDTA 81 (212)
T ss_dssp HHHHHHHH
T ss_pred eeccchHH
Confidence 77666544
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=97.24 E-value=0.00043 Score=56.56 Aligned_cols=67 Identities=16% Similarity=0.170 Sum_probs=42.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
+||+|||.|.+|.++|..|... |. ++++.+.........+.+ .+... ....+.+ .+++||+|
T Consensus 6 ~KI~IIGaG~VG~~~A~~l~~~------~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~--~~~~d~~-~~~~adiv 76 (146)
T d1ez4a1 6 QKVVLVGDGAVGSSYAFAMAQQ------GIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKK--IYSGEYS-DCKDADLV 76 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCE--EEECCGG-GGTTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEeecccchhHHHHHHHhccccccCCce--EeeccHH-HhccccEE
Confidence 8999999999999999999998 64 555544332222222221 11110 0123544 56899999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
+++..
T Consensus 77 vitag 81 (146)
T d1ez4a1 77 VITAG 81 (146)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99853
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=97.22 E-value=3.6e-05 Score=64.42 Aligned_cols=79 Identities=13% Similarity=-0.025 Sum_probs=52.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
.+++| ++|.|+|.|-.+.+++..|.+. +.++++.+|..++..+.+...+...........+....++|+||.+
T Consensus 14 ~~~~~-k~vlIlGaGGaarai~~aL~~~------~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~ 86 (171)
T d1p77a1 14 WLRPN-QHVLILGAGGATKGVLLPLLQA------QQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINA 86 (171)
T ss_dssp CCCTT-CEEEEECCSHHHHTTHHHHHHT------TCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEEC
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHccc------CceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeec
Confidence 35788 9999999999999999999876 6788888887554444444332110000011222346789999999
Q ss_pred cCCchH
Q 021114 186 ISDAAQ 191 (317)
Q Consensus 186 vP~~~~ 191 (317)
+|....
T Consensus 87 tp~g~~ 92 (171)
T d1p77a1 87 TSAGLS 92 (171)
T ss_dssp CCC---
T ss_pred cccccc
Confidence 998753
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=97.19 E-value=0.00036 Score=60.21 Aligned_cols=84 Identities=10% Similarity=0.116 Sum_probs=55.8
Q ss_pred CEEEEEeccchHHH-HHHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecC-CCcCCHHhhcC--cCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEEN-GTLGDIYETIS--GSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~A-iA~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~-~~~~~~~e~v~--~ADvVILav 186 (317)
-+|||||+|.||.. +...++.. -+++++...+++.+. .+.+.+.|+.... ....|.+|+++ +.|+|++++
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~-----~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~t 108 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGC-----QHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIIL 108 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTC-----SSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECS
T ss_pred EEEEEEcCcHHHHHHHHHHHHhC-----CCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeecc
Confidence 58999999999975 45555543 156666445554433 3455566653210 12468889885 579999999
Q ss_pred CCchHHHHHHHHHh
Q 021114 187 SDAAQADNYEKIFS 200 (317)
Q Consensus 187 P~~~~~~vl~ei~~ 200 (317)
|+..+.++..+.+.
T Consensus 109 p~~~H~~~~~~al~ 122 (221)
T d1h6da1 109 PNSLHAEFAIRAFK 122 (221)
T ss_dssp CGGGHHHHHHHHHH
T ss_pred chhhhhhHHHHhhh
Confidence 99999887766554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.18 E-value=0.00084 Score=54.44 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=41.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CCceecC--CCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AGFTEEN--GTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G~~~~~--~~~~~~~e~v~~ADvVILa 185 (317)
+||+|||.|.+|.++|..|... +. ++.+.+...+.....+.+ ....... .......+.+++||+|+++
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 75 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALR------QTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVT 75 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEEC
T ss_pred CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEe
Confidence 6899999999999999999887 65 565555444333333332 2111000 0012234568899999998
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 76 a 76 (142)
T d1y6ja1 76 A 76 (142)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=97.18 E-value=0.00017 Score=66.99 Aligned_cols=94 Identities=19% Similarity=0.196 Sum_probs=64.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++++|||.|.|+..+++.+..- +++ +|.++.+..++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 129 ~~l~iiG~G~QA~~~~~a~~~v-----~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v--~~~~s~~eav~~ADIi~t~T 201 (340)
T d1x7da_ 129 RKMALIGNGAQSEFQALAFHKH-----LGIEEIVAYDTDPLATAKLIANLKEYSGLTI--RRASSVAEAVKGVDIITTVT 201 (340)
T ss_dssp CEEEEECCSTTHHHHHHHHHHH-----SCCCEEEEECSSHHHHHHHHHHHTTCTTCEE--EECSSHHHHHTTCSEEEECC
T ss_pred ceEEEEcccHHHHHHHHHHhhh-----cceeeeEEEecChHHHHHHHHhhhhccCCCc--eecCCHHHHHhcCCceeecc
Confidence 7999999999999999998775 255 566666654333333322 24432 13578999999999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+......+++ ...++||+.|.-+++.
T Consensus 202 as~s~~Pv~~--~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 202 ADKAYATIIT--PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CCSSEEEEEC--GGGCCTTCEEEECSCC
T ss_pred ccCCCCcccc--hhhcCCCCEEeecccc
Confidence 7543323333 2468999998877764
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.18 E-value=0.00039 Score=57.38 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=63.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC-----cCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~-----~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |.++++..+.++...+.+++.|...- +....+..|.++ ..|+|
T Consensus 28 ~g-~~VlI~G~G~iG~~~~~~ak~~------g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~v 100 (174)
T d1f8fa2 28 PA-SSFVTWGAGAVGLSALLAAKVC------GASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFA 100 (174)
T ss_dssp TT-CEEEEESCSHHHHHHHHHHHHH------TCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CC-CEEEEeCCCHHHhhhhhccccc------ccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEE
Confidence 57 8999999999999999999999 98777777776777788888886421 111223444332 26888
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
|-++.... .+++....++++-.++..
T Consensus 101 id~~G~~~---~~~~~~~~~~~~G~i~~~ 126 (174)
T d1f8fa2 101 LESTGSPE---ILKQGVDALGILGKIAVV 126 (174)
T ss_dssp EECSCCHH---HHHHHHHTEEEEEEEEEC
T ss_pred EEcCCcHH---HHHHHHhcccCceEEEEE
Confidence 88877543 344445566666665544
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.16 E-value=0.00072 Score=55.21 Aligned_cols=69 Identities=20% Similarity=0.288 Sum_probs=41.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC----CceecC--CCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA----GFTEEN--GTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~----G~~~~~--~~~~~~~e~v~~ADvVI 183 (317)
|||+|||.|.+|.++|..|... |. ++++.+....+....+.+. .+...+ -...+ .+.+++||+||
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d-~~~l~~adiVV 74 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQ------GVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND-WAALADADVVI 74 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC-GGGGTTCSEEE
T ss_pred CeEEEECcCHHHHHHHHHHHhc------CCCceEEEEecccchhhhHHHhhhccccccCCccceeccC-HHHhccccEEE
Confidence 7999999999999999999887 64 5554443322221222110 111000 00223 35689999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
++..
T Consensus 75 itaG 78 (146)
T d1hyha1 75 STLG 78 (146)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9854
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00044 Score=58.17 Aligned_cols=77 Identities=16% Similarity=0.084 Sum_probs=60.1
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+++| |+|.|||-+. +|..++.-|... |..|++.... ..++.+.+++||+||.
T Consensus 33 i~l~G-K~v~VIGrS~~VG~Pla~lL~~~------gatVt~~h~~-------------------t~~l~~~~~~ADivI~ 86 (166)
T d1b0aa1 33 IDTFG-LNAVVIGASNIVGRPMSMELLLA------GCTTTVTHRF-------------------TKNLRHHVENADLLIV 86 (166)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHTT------TCEEEEECSS-------------------CSCHHHHHHHCSEEEE
T ss_pred ccccc-ceEEEEeccccccHHHHHHHHHh------hccccccccc-------------------cchhHHHHhhhhHhhh
Confidence 46889 9999999876 999999999988 9887655332 1366788899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++.-... +. .+.+|+|++|+|++-
T Consensus 87 a~G~p~~---i~--~~~vk~g~vvIDvGi 110 (166)
T d1b0aa1 87 AVGKPGF---IP--GDWIKEGAIVIDVGI 110 (166)
T ss_dssp CSCCTTC---BC--TTTSCTTCEEEECCC
T ss_pred hccCccc---cc--ccccCCCcEEEecCc
Confidence 9975433 22 346799999999864
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=97.06 E-value=0.00036 Score=60.59 Aligned_cols=84 Identities=8% Similarity=0.115 Sum_probs=53.1
Q ss_pred CEEEEEeccchHHHH----HHHHHhhhhhhcCCceEEEEecCCccc-HHHHHHCCceecCCCcCCHHhhcC--cCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQ----AQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~Ai----A~~Lr~~~~~~~~G~~Vivg~r~~~~s-~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVIL 184 (317)
.+|||||+|.+|+-+ ..+++.. ..+++++...+++.+. .+.+.+.+... .....+.+|+++ +-|+|++
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~----~~~~~ivav~d~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~iD~V~i 91 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQL----SSQFQIVALYNPTLKSSLQTIEQLQLKH-ATGFDSLESFAQYKDIDMIVV 91 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHT----TTTEEEEEEECSCHHHHHHHHHHTTCTT-CEEESCHHHHHHCTTCSEEEE
T ss_pred eEEEEEecCccccHHHHHHHHHHHhc----CCCeEEEEEEcCCHHHHHHHHHhccccc-ceeecchhhcccccccceeec
Confidence 689999999865444 4445442 1156765444554433 34455565531 112468899884 5789999
Q ss_pred ccCCchHHHHHHHHHh
Q 021114 185 LISDAAQADNYEKIFS 200 (317)
Q Consensus 185 avP~~~~~~vl~ei~~ 200 (317)
++|+..+.+.....+.
T Consensus 92 ~tp~~~h~~~~~~al~ 107 (237)
T d2nvwa1 92 SVKVPEHYEVVKNILE 107 (237)
T ss_dssp CSCHHHHHHHHHHHHH
T ss_pred cCCCcchhhHHHHHHH
Confidence 9999998887665443
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.04 E-value=0.0012 Score=53.42 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=42.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC--C-----ceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA--G-----FTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~--G-----~~~~~~~~~~~~e~v~~ADvVI 183 (317)
+||+|||.|.+|.++|..|... +. ++++.+...+.....+.+. . ....-....+.+ .+++||+|+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~------~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~-~~~~advvv 74 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAK------ELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA-DTANSDVIV 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG-GGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH-HhcCCCEEE
Confidence 7999999999999999999887 65 6555443333222222221 1 000000123444 578999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
++..
T Consensus 75 itag 78 (142)
T d1uxja1 75 VTSG 78 (142)
T ss_dssp ECCS
T ss_pred Eeee
Confidence 9874
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.02 E-value=0.0015 Score=53.48 Aligned_cols=69 Identities=16% Similarity=0.165 Sum_probs=42.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v~~ADvVI 183 (317)
.||+|||.|.+|.++|..|... +. ++.+.+.........+.+. +... .-...+..+.+++||+|+
T Consensus 4 ~KI~IIGaG~VG~~~a~~l~~~------~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~-~v~~~~~~~~~~~advvv 76 (150)
T d1t2da1 4 AKIVLVGSGMIGGVMATLIVQK------NLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNC-KVSGSNTYDDLAGADVVI 76 (150)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCC-CEEEECCGGGGTTCSEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCeEEEEeccCCcceeeecchhhhccccCCCc-EEEecccccccCCCcEEE
Confidence 7999999999999999988777 55 5544444333222222211 1110 000124456789999999
Q ss_pred EccC
Q 021114 184 LLIS 187 (317)
Q Consensus 184 LavP 187 (317)
++.-
T Consensus 77 itag 80 (150)
T d1t2da1 77 VTAG 80 (150)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9865
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.99 E-value=0.001 Score=55.97 Aligned_cols=77 Identities=16% Similarity=0.157 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
.+|+| |++.|||-+. .|..+|.-|... |..|.+.... ..++.+.+++||+||.
T Consensus 35 i~l~G-k~vvVIGrS~iVGrPLa~lL~~~------gatVt~~~~~-------------------t~~l~~~~~~aDivi~ 88 (170)
T d1a4ia1 35 VPIAG-RHAVVVGRSKIVGAPMHDLLLWN------NATVTTCHSK-------------------TAHLDEEVNKGDILVV 88 (170)
T ss_dssp CCCTT-CEEEEECCCTTTHHHHHHHHHHT------TCEEEEECTT-------------------CSSHHHHHTTCSEEEE
T ss_pred ccccc-ceEEEEecCCccchHHHHHHHhc------cCceEEEecc-------------------cccHHHHHhhccchhh
Confidence 46899 9999999875 999999999998 9887665432 2356678899999999
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
++..... ++ .+++|+|++|+|++-
T Consensus 89 a~G~~~~---i~--~~~vk~g~iviDvgi 112 (170)
T d1a4ia1 89 ATGQPEM---VK--GEWIKPGAIVIDCGI 112 (170)
T ss_dssp CCCCTTC---BC--GGGSCTTCEEEECCC
T ss_pred ccccccc---cc--cccccCCCeEeccCc
Confidence 9986443 22 346899999999953
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.97 E-value=0.0023 Score=52.00 Aligned_cols=68 Identities=15% Similarity=0.191 Sum_probs=42.9
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHCC----ceecC--CCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEEN--GTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~G----~~~~~--~~~~~~~e~v~~ADvV 182 (317)
.||+||| .|.+|.++|..|... |+ ++++. +.+. ....+.+.. +.... -...+..|.+++||+|
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~------~~~~elvLi-Di~~-~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDiv 72 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNS------PLVSRLTLY-DIAH-TPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVV 72 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTC------TTCSEEEEE-ESSS-HHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred CeEEEECCCChHHHHHHHHHHhC------CccceEEEE-eccc-cchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence 3899999 599999999999988 76 44444 4432 223333221 10000 0124567889999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
+++.-
T Consensus 73 Vitag 77 (144)
T d1mlda1 73 VIPAG 77 (144)
T ss_dssp EECCS
T ss_pred EECCC
Confidence 99753
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.95 E-value=5e-05 Score=62.78 Aligned_cols=79 Identities=13% Similarity=0.230 Sum_probs=50.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCCc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDA 189 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~~ 189 (317)
.+|||||+|.||...+..+++.. +. ..-.++..+...+ .+...++. ..+.+|++. +.|+|++++|+.
T Consensus 8 ~kv~iIG~G~~g~~h~~~l~~~~-~~--~~~~~~~~~~~~~---~~~~~~~~-----~~~~~e~l~~~~iD~V~I~tp~~ 76 (172)
T d1lc0a1 8 FGVVVVGVGRAGSVRLRDLKDPR-SA--AFLNLIGFVSRRE---LGSLDEVR-----QISLEDALRSQEIDVAYICSESS 76 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHH-HH--TTEEEEEEECSSC---CCEETTEE-----BCCHHHHHHCSSEEEEEECSCGG
T ss_pred cEEEEEcCCHHHHHHHHHHHhCC-CC--cEEEEEeccchHH---HHHhhccC-----cCCHHHHHhCCCcchhhhccccc
Confidence 58999999999999998887651 10 1111223222111 11112233 347888875 569999999999
Q ss_pred hHHHHHHHHHhc
Q 021114 190 AQADNYEKIFSC 201 (317)
Q Consensus 190 ~~~~vl~ei~~~ 201 (317)
.+.+++.+.+..
T Consensus 77 ~H~~~~~~al~~ 88 (172)
T d1lc0a1 77 SHEDYIRQFLQA 88 (172)
T ss_dssp GHHHHHHHHHHT
T ss_pred cccccccccccc
Confidence 998877765554
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.00024 Score=59.40 Aligned_cols=98 Identities=13% Similarity=0.129 Sum_probs=59.8
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHH----HHHC----CceecCCCcC---CHH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAE----ARAA----GFTEENGTLG---DIY 173 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~----A~~~----G~~~~~~~~~---~~~ 173 (317)
.+++| ++|.|||.|-.|.+++..|.+. |. ++++.+|..+. .++ +.+. .......... +..
T Consensus 14 ~~l~~-k~vlIlGaGGaarai~~al~~~------g~~~i~i~nR~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 85 (182)
T d1vi2a1 14 FDIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEF-FDKALAFAQRVNENTDCVVTVTDLADQQAFA 85 (182)
T ss_dssp CCCTT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEECSSTT-HHHHHHHHHHHHHHSSCEEEEEETTCHHHHH
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHhhc------CCceEeeeccchHH-HHHHHHHHHHHHhhcCcceEeeecccccchh
Confidence 46789 9999999999999999999998 87 56677776432 222 2211 1110000012 244
Q ss_pred hhcCcCCEEEEccCCchHHH---HHHHHHhcCCCCcEEEEe
Q 021114 174 ETISGSDLVLLLISDAAQAD---NYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 174 e~v~~ADvVILavP~~~~~~---vl~ei~~~lk~gaiVi~~ 211 (317)
+.+.++|+||.++|...... .+..-...++++.+++|+
T Consensus 86 ~~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di 126 (182)
T d1vi2a1 86 EALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTEC 126 (182)
T ss_dssp HHHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEEC
T ss_pred hhhcccceeccccCCccccccchhhhhHHHhhhcchhhHHh
Confidence 56789999999999754321 111112345666666655
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.88 E-value=0.0047 Score=49.82 Aligned_cols=94 Identities=14% Similarity=0.101 Sum_probs=62.2
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec---CCCcCCHHhh---c-----
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE---NGTLGDIYET---I----- 176 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~---~~~~~~~~e~---v----- 176 (317)
-+| .++.|+|.|.+|...++.++.. |.+|++ .+.++...+.+++.|.... +....+..+. +
T Consensus 25 ~~g-~~vlV~G~G~vG~~~~~~ak~~------Ga~vi~-v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g 96 (170)
T d1e3ja2 25 QLG-TTVLVIGAGPIGLVSVLAAKAY------GAFVVC-TARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIG 96 (170)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEE-EESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSS
T ss_pred CCC-CEEEEEcccccchhhHhhHhhh------cccccc-cchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccc
Confidence 357 8999999999999999999998 988665 4555566788888885321 1111122221 1
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..+|+||-++... ..+++....++++..++..+
T Consensus 97 ~g~D~vid~~g~~---~~~~~a~~~~~~~G~iv~~G 129 (170)
T d1e3ja2 97 DLPNVTIDCSGNE---KCITIGINITRTGGTLMLVG 129 (170)
T ss_dssp SCCSEEEECSCCH---HHHHHHHHHSCTTCEEEECS
T ss_pred cCCceeeecCCCh---HHHHHHHHHHhcCCceEEEe
Confidence 3478888887653 34455556677777666443
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.85 E-value=0.0017 Score=53.80 Aligned_cols=73 Identities=21% Similarity=0.168 Sum_probs=44.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC-------CceecCCCcCCHHhhc
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETI 176 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~~~~~~~~~e~v 176 (317)
..++. .||+|||.|.+|.++|..|... |+ ++++.+.........+.+. +... .....+ .+.+
T Consensus 15 ~~~~~-~KI~IIGaG~VG~~~A~~l~~~------~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~-~~~~~d-~~~~ 85 (159)
T d2ldxa1 15 DKLSR-CKITVVGVGDVGMACAISILLK------GLADELALVDADTDKLRGEALDLQHGSLFLSTPK-IVFGKD-YNVS 85 (159)
T ss_dssp CCCCC-CEEEEECCSHHHHHHHHHHHTT------TSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCE-EEEESS-GGGG
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCchhhhccHHHHhCcchhcCCCe-EEeccc-hhhh
Confidence 34455 7999999999999999999988 76 5555443322222222211 1110 001234 4566
Q ss_pred CcCCEEEEccC
Q 021114 177 SGSDLVLLLIS 187 (317)
Q Consensus 177 ~~ADvVILavP 187 (317)
++||+|+++.-
T Consensus 86 ~~adivvitag 96 (159)
T d2ldxa1 86 ANSKLVIITAG 96 (159)
T ss_dssp TTEEEEEECCS
T ss_pred ccccEEEEecc
Confidence 89999999763
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.00073 Score=55.74 Aligned_cols=68 Identities=16% Similarity=0.190 Sum_probs=50.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++ ++|.|||.|-.+.+++..|++. |. ++.+.+|+.++....+...+... ..+. -..++|+||.+||
T Consensus 16 ~~-~~vlIlGaGGaarai~~aL~~~------g~~~I~I~nR~~~ka~~L~~~~~~~~----~~~~--~~~~~DliINaTp 82 (167)
T d1npya1 16 KN-AKVIVHGSGGMAKAVVAAFKNS------GFEKLKIYARNVKTGQYLAALYGYAY----INSL--ENQQADILVNVTS 82 (167)
T ss_dssp TT-SCEEEECSSTTHHHHHHHHHHT------TCCCEEEECSCHHHHHHHHHHHTCEE----ESCC--TTCCCSEEEECSS
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCCEEEEecccHHHHHHHHHhhhhhh----hhcc--cccchhhheeccc
Confidence 56 8999999999999999999998 87 67777776554444555555542 1222 2357999999999
Q ss_pred Cc
Q 021114 188 DA 189 (317)
Q Consensus 188 ~~ 189 (317)
..
T Consensus 83 iG 84 (167)
T d1npya1 83 IG 84 (167)
T ss_dssp TT
T ss_pred cC
Confidence 54
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.83 E-value=0.0024 Score=48.44 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=52.8
Q ss_pred cCCCCEEEEEeccchH-HHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 108 FNGINQIGVIGWGSQG-PAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 108 l~GikkIGIIG~G~mG-~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++-+++|=|||.|-+| .++|+.|++. |++|...+....+..+..++.|+... .....+-+++.|+||...
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~------G~~VsGSD~~~~~~~~~L~~~Gi~v~---~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNE------GYQISGSDIADGVVTQRLAQAGAKIY---IGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHH------TCEEEEEESCCSHHHHHHHHTTCEEE---ESCCGGGGTTCSEEEECT
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhC------CCEEEEEeCCCChhhhHHHHCCCeEE---ECCccccCCCCCEEEECC
Confidence 3344899999999999 6779999999 99887555554555567778898642 344455678999998854
Q ss_pred C
Q 021114 187 S 187 (317)
Q Consensus 187 P 187 (317)
-
T Consensus 76 A 76 (96)
T d1p3da1 76 A 76 (96)
T ss_dssp T
T ss_pred C
Confidence 3
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.83 E-value=0.00081 Score=54.17 Aligned_cols=69 Identities=20% Similarity=0.179 Sum_probs=42.6
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH--CC--ceecCC--CcCCHHhhcCcCCEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA--AG--FTEENG--TLGDIYETISGSDLVL 183 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~--~G--~~~~~~--~~~~~~e~v~~ADvVI 183 (317)
|||+|||.|.+|.++|..|... +. ++.+.+.........+.. .- +...+. ...+..+.+++||+|+
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~------~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvv 74 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEK------QLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVI 74 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEE
Confidence 6899999999999999999887 64 565555443322222211 10 000000 1124456789999999
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
++.
T Consensus 75 ita 77 (142)
T d1guza1 75 ITA 77 (142)
T ss_dssp ECC
T ss_pred EEE
Confidence 985
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.00099 Score=53.74 Aligned_cols=69 Identities=23% Similarity=0.320 Sum_probs=41.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
|||+|||.|.+|.++|..|... +. ++.+.+.........+.+ ..+........+..+.+++||+|+++
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvit 74 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMK------GFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVA 74 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------TCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEEC
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEe
Confidence 6899999999999999998887 64 555444332222222222 11110000012335568999999998
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 75 a 75 (140)
T d1a5za1 75 A 75 (140)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.80 E-value=0.00063 Score=56.45 Aligned_cols=94 Identities=20% Similarity=0.251 Sum_probs=64.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhcC------cCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS------GSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~------~ADv 181 (317)
+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.+. ..|+
T Consensus 27 ~g-~~VlI~GaG~vGl~~~q~ak~~------Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 27 MG-SSVVVIGIGAVGLMGIAGAKLR------GAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp TT-CCEEEECCSHHHHHHHHHHHTT------TCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred CC-CEEEEEcCCcchhhhhhhhhcc------cccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcce
Confidence 57 8999999999999999999998 97444566666666788998885320 111123333332 3899
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
||-++.... .+++....++++..++..+
T Consensus 100 vid~~g~~~---~~~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 100 VIMAGGGSE---TLSQAVKMVKPGGIISNIN 127 (174)
T ss_dssp EEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred EEEccCCHH---HHHHHHHHHhcCCEEEEEe
Confidence 999998643 3455556667777776554
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.0036 Score=49.99 Aligned_cols=75 Identities=15% Similarity=0.050 Sum_probs=50.4
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc---HHHHHHCCceecCCCcCCHH----hhcCcCCEEEEc
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIY----ETISGSDLVLLL 185 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~~~~~~~~~----e~v~~ADvVILa 185 (317)
.|-|+|+|.+|..+++.|.+. |.++++.....++. .+.....|+..-.+...+.+ .-+.+||.|+++
T Consensus 5 HiII~G~g~~g~~l~~~L~~~------~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~ 78 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQR------GQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILAL 78 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------TCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHc------CCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence 589999999999999999999 98877665543322 23333456532122233332 236789999999
Q ss_pred cCCchHHH
Q 021114 186 ISDAAQAD 193 (317)
Q Consensus 186 vP~~~~~~ 193 (317)
+++....-
T Consensus 79 ~~~d~~n~ 86 (153)
T d1id1a_ 79 SDNDADNA 86 (153)
T ss_dssp SSCHHHHH
T ss_pred cccHHHHH
Confidence 99876543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.74 E-value=0.0014 Score=53.97 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=60.5
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc---------C
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI---------S 177 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v---------~ 177 (317)
-+| .+|.|+|.|.+|...++.++.. |...++..+.+++..+.+++.|.... +....+..+.. .
T Consensus 27 ~~G-~~VlV~GaG~iG~~~~~~ak~~------Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAG-KTVVIQGAGPLGLFGVVIARSL------GAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBT-CEEEEECCSHHHHHHHHHHHHT------TBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCC-CEEEEECCCccchhheeccccc------ccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCC
Confidence 368 9999999999999999999998 97433445555666788888885310 11112333221 1
Q ss_pred cCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 178 GSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 178 ~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..|+||-++.... .++.....++++..++..+
T Consensus 100 g~Dvvid~vG~~~---~~~~a~~~l~~~G~iv~~G 131 (182)
T d1vj0a2 100 GADFILEATGDSR---ALLEGSELLRRGGFYSVAG 131 (182)
T ss_dssp CEEEEEECSSCTT---HHHHHHHHEEEEEEEEECC
T ss_pred CceEEeecCCchh---HHHHHHHHhcCCCEEEEEe
Confidence 3688888876533 3444455566666655443
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.70 E-value=0.0028 Score=50.50 Aligned_cols=87 Identities=17% Similarity=0.143 Sum_probs=64.7
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||. |..|..+.++|++. | .+|+-.+.+. +.. .|... +.++.|+=...|++++++
T Consensus 9 ksIAVVGaS~~~~~~g~~v~~~L~~~------~~g~v~pVnP~~-~~i-----~G~~~----y~sl~dlp~~vDlvvi~v 72 (129)
T d2csua1 9 KGIAVIGASNDPKKLGYEVFKNLKEY------KKGKVYPVNIKE-EEV-----QGVKA----YKSVKDIPDEIDLAIIVV 72 (129)
T ss_dssp SEEEEETCCSCTTSHHHHHHHHHTTC------CSSEEEEECSSC-SEE-----TTEEC----BSSTTSCSSCCSEEEECS
T ss_pred CeEEEEccCCCCCCcHHHHHHHHHHc------CCCcEEEeccCc-ccc-----CCeEe----ecchhhcCCCCceEEEec
Confidence 89999996 89999999999876 5 4664444332 221 46653 668888878899999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
|+....+++++....= -..+++.++||.
T Consensus 73 p~~~~~~~~~~~~~~g-~~~~vi~s~Gf~ 100 (129)
T d2csua1 73 PKRFVKDTLIQCGEKG-VKGVVIITAGFG 100 (129)
T ss_dssp CHHHHHHHHHHHHHHT-CCEEEECCCSST
T ss_pred ChHHhHHHHHHHHHcC-CCEEEEeccccc
Confidence 9999999998866542 345777888873
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.67 E-value=0.0057 Score=51.33 Aligned_cols=95 Identities=16% Similarity=0.169 Sum_probs=57.6
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cHHHHHHCCceec-----------C--CCcCCHHhhc
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEE-----------N--GTLGDIYETI 176 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~~~A~~~G~~~~-----------~--~~~~~~~e~v 176 (317)
|-||||.|+|.||+.+++.+.+. .+++++..++..+. ........+.... + ....+..++.
T Consensus 1 MIKVaINGfGRIGR~v~Ral~~~-----~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~ 75 (178)
T d1b7go1 1 MVNVAVNGYGTIGKRVADAIIKQ-----PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI 75 (178)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH
T ss_pred CeEEEEECCCHHHHHHHHHHHhC-----CCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh
Confidence 35899999999999999999876 14666554554322 2222222221100 0 0134667777
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.++|+|+-|+|.....+..+.. ++.|+-++++++
T Consensus 76 ~~vDiViecTG~f~~~e~a~~h---l~~G~KvIi~~~ 109 (178)
T d1b7go1 76 KTSDIVVDTTPNGVGAQYKPIY---LQLQRNAIFQGG 109 (178)
T ss_dssp HHCSEEEECCSTTHHHHHHHHH---HHTTCEEEECTT
T ss_pred hcCCEEEECCCCcCCHHHHHHH---HHcCCEEEEECC
Confidence 8999999999986555444433 344554555543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=96.64 E-value=0.0011 Score=53.31 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=77.1
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
++|+|||. +..|..+.++|++. |+++....-+.. .. -.|... ..++.|+-...|+|++++
T Consensus 14 ksIAVVGaS~~~~k~g~~v~~~L~~~------g~~~~~v~~~~~~~~-----i~g~~~----~~~l~~i~~~iD~v~v~~ 78 (136)
T d1iuka_ 14 KTIAVLGAHKDPSRPAHYVPRYLREQ------GYRVLPVNPRFQGEE-----LFGEEA----VASLLDLKEPVDILDVFR 78 (136)
T ss_dssp CEEEEETCCSSTTSHHHHHHHHHHHT------TCEEEEECGGGTTSE-----ETTEEC----BSSGGGCCSCCSEEEECS
T ss_pred CeEEEEeecCCCCCchHHHHHHHhcC------CCCceEEEeccccce-----eeceec----ccchhhccCCCceEEEec
Confidence 89999996 78999999999999 998765543211 11 135543 568888777889999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCCChhhHHHHh
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~pg~~~r~lf~ 249 (317)
|+....+++++.... .... +++..|+.-..+.+ ..-..++++| +||++.-+-.++|.
T Consensus 79 p~~~v~~~v~~~~~~-g~k~-i~~q~G~~~~e~~~--~a~~~Gi~vV--~~~C~~ie~~rl~~ 135 (136)
T d1iuka_ 79 PPSALMDHLPEVLAL-RPGL-VWLQSGIRHPEFEK--ALKEAGIPVV--ADRCLMVEHKRLFR 135 (136)
T ss_dssp CHHHHTTTHHHHHHH-CCSC-EEECTTCCCHHHHH--HHHHTTCCEE--ESCCHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhh-CCCe-EEEecCccCHHHHH--HHHHcCCEEE--cCCccHHHHHHhhC
Confidence 999998999876654 2333 44556653222221 0112367777 66776555555553
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.63 E-value=0.0014 Score=54.50 Aligned_cols=73 Identities=21% Similarity=0.227 Sum_probs=45.2
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHHC--C--cee--cCCCcCCHHhhcC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--G--FTE--ENGTLGDIYETIS 177 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~~--G--~~~--~~~~~~~~~e~v~ 177 (317)
..++. +||+|||.|.+|.++|..|... |+ ++++.+...+....++.+. . +.. ......+ .+.++
T Consensus 16 ~~~~~-~KV~IIGaG~VG~~~A~~l~~~------~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d-~~~~~ 87 (160)
T d1i0za1 16 ATVPN-NKITVVGVGQVGMACAISILGK------SLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD-YSVTA 87 (160)
T ss_dssp CCCCS-SEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS-GGGGT
T ss_pred ccCCC-CeEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc-hhhcc
Confidence 45566 8999999999999999999998 76 5555444322222233221 1 100 0001233 45688
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
+||+|+++.
T Consensus 88 ~adiVVitA 96 (160)
T d1i0za1 88 NSKIVVVTA 96 (160)
T ss_dssp TCSEEEECC
T ss_pred cccEEEEec
Confidence 999999964
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.58 E-value=0.0058 Score=49.23 Aligned_cols=86 Identities=10% Similarity=0.063 Sum_probs=63.4
Q ss_pred CEEEEEec----cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~----G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++|+|||. +..|..++++|++. |++|+-.+.+ .... .|... +.+++|+-..-|+|++++|
T Consensus 20 ksIAVVGaS~~~~~~g~~v~~~L~~~------g~~v~pVnP~-~~~i-----~G~~~----~~sl~dlp~~iD~v~i~vp 83 (139)
T d2d59a1 20 KKIALVGASPKPERDANIVMKYLLEH------GYDVYPVNPK-YEEV-----LGRKC----YPSVLDIPDKIEVVDLFVK 83 (139)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEEECTT-CSEE-----TTEEC----BSSGGGCSSCCSEEEECSC
T ss_pred CeEEEEeecCCCCCchHHHHHHHHHC------CCEEEEECCc-cccc-----CCCcc----cccccccCccceEEEEEeC
Confidence 89999995 57999999999999 9986544433 2211 46653 6788888888999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+..+.+++++.... ....+++-.+++
T Consensus 84 ~~~~~~~~~e~~~~-g~k~v~~~~G~~ 109 (139)
T d2d59a1 84 PKLTMEYVEQAIKK-GAKVVWFQYNTY 109 (139)
T ss_dssp HHHHHHHHHHHHHH-TCSEEEECTTCC
T ss_pred HHHHHHHHHHHHHh-CCCEEEEecccc
Confidence 99999999987654 233444444555
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.51 E-value=0.0013 Score=53.27 Aligned_cols=69 Identities=16% Similarity=0.129 Sum_probs=41.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
|||+|||.|.+|.++|..|... |. ++.+.+...+.....+.+ ......-....+ .|.+++||+|
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d-~~~~~~adiV 73 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLN------LDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEII 73 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH------SCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhc------CcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCC-HHHhccccEE
Confidence 7999999999999999999887 65 454444332222222211 111000001234 4688999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
+++.-
T Consensus 74 vitag 78 (142)
T d1ojua1 74 VVTAG 78 (142)
T ss_dssp EECCC
T ss_pred EEecc
Confidence 99764
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=96.46 E-value=0.0023 Score=56.14 Aligned_cols=75 Identities=16% Similarity=0.134 Sum_probs=53.5
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HHCCceecCCCcCCHHhhc-CcCCEE
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RAAGFTEENGTLGDIYETI-SGSDLV 182 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~~G~~~~~~~~~~~~e~v-~~ADvV 182 (317)
-..|+| ++|.|-|+|++|..+|+.|.+. |.++++.+.. ....+.+ ...|... .+.++.. .+||++
T Consensus 34 ~~~l~g-~~v~IqG~GnVG~~~a~~L~~~------Gakvv~~d~~-~~~~~~~~~~~g~~~-----~~~~~~~~~~cDIl 100 (230)
T d1leha1 34 SDSLEG-LAVSVQGLGNVAKALCKKLNTE------GAKLVVTDVN-KAAVSAAVAEEGADA-----VAPNAIYGVTCDIF 100 (230)
T ss_dssp SCCCTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSC-HHHHHHHHHHHCCEE-----CCGGGTTTCCCSEE
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEeeccc-HHHHHHHHHhcCCcc-----cCCcccccccccEe
Confidence 467999 9999999999999999999999 9987655443 3333333 3355542 3455544 479999
Q ss_pred EEccCCchHH
Q 021114 183 LLLISDAAQA 192 (317)
Q Consensus 183 ILavP~~~~~ 192 (317)
+-|--...+.
T Consensus 101 ~PcA~~~~I~ 110 (230)
T d1leha1 101 APCALGAVLN 110 (230)
T ss_dssp EECSCSCCBS
T ss_pred cccccccccC
Confidence 9886655543
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=96.46 E-value=0.0015 Score=53.15 Aligned_cols=70 Identities=23% Similarity=0.211 Sum_probs=41.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHHHH--HCC--ceec-CCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEAR--AAG--FTEE-NGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~A~--~~G--~~~~-~~~~~~~~e~v~~ADvVIL 184 (317)
.||+|||.|.+|.++|..|... |+ ++++.+.........+. +.. +... .-...+..+.+++||+|++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~------~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVi 75 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQR------GIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVI 75 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEE
Confidence 5899999999999999999888 65 55554433222222221 111 1100 0001233456889999999
Q ss_pred ccC
Q 021114 185 LIS 187 (317)
Q Consensus 185 avP 187 (317)
+.-
T Consensus 76 taG 78 (143)
T d1llda1 76 TAG 78 (143)
T ss_dssp CCC
T ss_pred ecc
Confidence 763
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.46 E-value=0.0031 Score=50.04 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=65.2
Q ss_pred ccccCCCCEEEEEec----------cchHHHHHHHHHhhhhhhcCCceEEEEecCC------cccHHHHHH----CCcee
Q 021114 105 PDAFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG------SRSFAEARA----AGFTE 164 (317)
Q Consensus 105 ~~~l~GikkIGIIG~----------G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~------~~s~~~A~~----~G~~~ 164 (317)
+..+.+ ++|+|+|+ ++-.-.++..|... |.+|.+++..- ....+.... .+..
T Consensus 8 i~~~~~-kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~------g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~- 79 (136)
T d1mv8a3 8 ITSHDT-RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK------GYELRIFDRNVEYARVHGANKEYIESKIPHVSSL- 79 (136)
T ss_dssp HTTSSC-CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT------TCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTT-
T ss_pred HHhcCC-CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh------hccccccCCCCCHHHHhhhhhhhhhhccccccce-
Confidence 355677 99999997 57788888888888 99876664210 000111110 0111
Q ss_pred cCCCcCCHHhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 165 ENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 165 ~~~~~~~~~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
...++.++++++|+|+++++.....+ +...++++.+|+|.-|+
T Consensus 80 ---~~~~~~e~i~~~D~ivi~t~h~~f~~----l~~~~~~~~~I~D~~~~ 122 (136)
T d1mv8a3 80 ---LVSDLDEVVASSDVLVLGNGDELFVD----LVNKTPSGKKLVDLVGF 122 (136)
T ss_dssp ---BCSCHHHHHHHCSEEEECSCCGGGHH----HHHSCCTTCEEEESSSC
T ss_pred ---eehhhhhhhhhceEEEEEeCCHHHHH----HHHHhcCCCEEEECCCC
Confidence 14589999999999999999877544 44557788899999886
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.45 E-value=0.0042 Score=48.35 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=50.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhh----cCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET----ISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~----v~~ADvVILavP 187 (317)
|.|-|+|+|.+|..+++.|+.. +. ++. +.++...+.....|+..-.+...+.+-+ +.+|+.++++++
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~------~i--~vi-~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~ 71 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGS------EV--FVL-AEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE 71 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGG------GE--EEE-ESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHcCC------CC--EEE-EcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence 4588999999999999999766 43 333 3344455666777754322333343322 678999999999
Q ss_pred CchHHHHHH
Q 021114 188 DAAQADNYE 196 (317)
Q Consensus 188 ~~~~~~vl~ 196 (317)
+....-.+-
T Consensus 72 ~d~~n~~~~ 80 (129)
T d2fy8a1 72 SDSETIHCI 80 (129)
T ss_dssp SHHHHHHHH
T ss_pred chhhhHHHH
Confidence 877654433
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=96.36 E-value=0.0055 Score=48.72 Aligned_cols=76 Identities=12% Similarity=0.155 Sum_probs=55.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCCch
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~~~ 190 (317)
|||+|+|+ |.||+.+++.+.+. |++++.+.+.+ ..+.+.++|+||=-+.|+.
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~------~~~l~~~id~~---------------------~~~~~~~~DVvIDFS~p~~ 53 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEK------GHELVLKVDVN---------------------GVEELDSPDVVIDFSSPEA 53 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEEETT---------------------EEEECSCCSEEEECSCGGG
T ss_pred CEEEEECCCCHHHHHHHHHHhcC------CCeEEEEECCC---------------------cHHHhccCCEEEEecCHHH
Confidence 68999996 99999999998888 88876655432 1234567999999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
..++++....+=+ .+|+=+.|+.-
T Consensus 54 ~~~~l~~~~~~~~--p~ViGTTG~~~ 77 (128)
T d1vm6a3 54 LPKTVDLCKKYRA--GLVLGTTALKE 77 (128)
T ss_dssp HHHHHHHHHHHTC--EEEECCCSCCH
T ss_pred HHHHHHHHHhcCC--CEEEEcCCCCH
Confidence 8888775544322 25555667753
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=96.35 E-value=0.004 Score=50.66 Aligned_cols=96 Identities=16% Similarity=0.154 Sum_probs=53.4
Q ss_pred CCEEEEEec-cchHHHHHHHHHhhhhhhcCC-ceEEEEecCCc--ccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G-~~Vivg~r~~~--~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILav 186 (317)
||||||||. |..|+.+.+.|.+.. .+- .++.....+.. ............. ...+ .+.++++|++|+++
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~---~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~---~~~~-~~~~~~~DivF~a~ 73 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEER---DFDAIRPVFFSTSQLGQAAPSFGGTTGTLQ---DAFD-LEALKALDIIVTCQ 73 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTT---GGGGSEEEEEESSSTTSBCCGGGTCCCBCE---ETTC-HHHHHTCSEEEECS
T ss_pred CcEEEEECCccHHHHHHHHHHHhCC---CCCeeEEEEeeccccccccccccCCceeee---cccc-hhhhhcCcEEEEec
Confidence 689999995 999999998765430 001 13332322211 1111111111110 0122 23568999999999
Q ss_pred CCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 187 P~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
|.....++.+++... ..+.+|+|.++.
T Consensus 74 ~~~~s~~~~~~~~~~-g~~~~VID~Ss~ 100 (146)
T d1t4ba1 74 GGDYTNEIYPKLRES-GWQGYWIDAASS 100 (146)
T ss_dssp CHHHHHHHHHHHHHT-TCCCEEEECSST
T ss_pred CchHHHHhhHHHHhc-CCCeecccCCcc
Confidence 987777777666542 233578877763
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=96.33 E-value=0.0073 Score=47.09 Aligned_cols=74 Identities=11% Similarity=0.178 Sum_probs=57.4
Q ss_pred CEEEEEe----ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG----~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|+|+||| -|..|..+.++|++. |++|+- ..+..+.. .|... +.++.|+=..-|++++++|
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~------g~~V~p-VnP~~~~i-----~G~~~----y~sl~~lp~~~D~vvi~vp 65 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSK------GFEVLP-VNPNYDEI-----EGLKC----YRSVRELPKDVDVIVFVVP 65 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHT------TCEEEE-ECTTCSEE-----TTEEC----BSSGGGSCTTCCEEEECSC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHC------CCEEEE-Eccccccc-----cCccc----cccchhccccceEEEEEeC
Confidence 7899999 467899999999999 998644 33322221 46653 5688888788899999999
Q ss_pred CchHHHHHHHHHhc
Q 021114 188 DAAQADNYEKIFSC 201 (317)
Q Consensus 188 ~~~~~~vl~ei~~~ 201 (317)
+....+++++....
T Consensus 66 ~~~~~~~l~~~~~~ 79 (116)
T d1y81a1 66 PKVGLQVAKEAVEA 79 (116)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999986653
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.33 E-value=0.015 Score=47.77 Aligned_cols=87 Identities=20% Similarity=0.265 Sum_probs=60.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc-C-CHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL-G-DIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~-~-~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... +... . ..++.. ..+|
T Consensus 28 ~G-~~VlV~G~G~iGl~a~~~ak~~------Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PG-STCAVFGLGCVGLSAIIGCKIA------GASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CC-CEEEEECCChHHHHHHHHHHHh------CCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCc
Confidence 57 8999999999999999999999 98656666666777899999997531 0000 1 122222 4578
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPN 205 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~g 205 (317)
+||-++.... .+++-...++++
T Consensus 101 ~vie~~G~~~---~~~~a~~~~~~g 122 (174)
T d1e3ia2 101 YSLDCAGTAQ---TLKAAVDCTVLG 122 (174)
T ss_dssp EEEESSCCHH---HHHHHHHTBCTT
T ss_pred EEEEecccch---HHHHHHHHhhcC
Confidence 9988887643 355555666664
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.31 E-value=0.0041 Score=50.68 Aligned_cols=92 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc-----CcCCEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI-----SGSDLV 182 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v-----~~ADvV 182 (317)
+| .+|.|+|.|.+|...++.++.. |..+++..+.+++..+.+++.|...- +....+.++.. ...|+|
T Consensus 32 ~g-~~vli~GaG~vG~~~~~~a~~~------g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PG-AYVAIVGVGGLGHIAVQLLKVM------TPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------CCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CC-CEEEEeCCChHHHHHHHHHHhh------cCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEE
Confidence 47 9999999999999999999998 87666666666666778888775321 00111122222 135667
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
|-++.... .+++....++++-.++.
T Consensus 105 id~~g~~~---~~~~a~~~l~~~G~iv~ 129 (172)
T d1h2ba2 105 MDFVGSQA---TVDYTPYLLGRMGRLII 129 (172)
T ss_dssp EESSCCHH---HHHHGGGGEEEEEEEEE
T ss_pred EEecCcch---HHHHHHHHHhCCCEEEE
Confidence 76666533 24444555555555443
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=96.28 E-value=0.014 Score=47.04 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=64.0
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC---CCcCCHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN---GTLGDIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~---~~~~~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|-+|...++.++.. |..+++..+++++..+.+++.|....- ....+..+.+ ..+|
T Consensus 28 ~G-~tVlI~GaGGvG~~aiq~ak~~------G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 28 PG-SVCAVFGLGGVGLAVIMGCKVA------GASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CC-CEEEEecchhHHHHHHHHHHHH------hcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 57 9999999999999999999999 976667777777778899998864310 0112233333 3589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+-++.... .++.....+++|..++..
T Consensus 101 ~vid~~G~~~---~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 101 YSFECIGNVK---VMRAALEACHKGWGVSVV 128 (176)
T ss_dssp EEEECSCCHH---HHHHHHHTBCTTTCEEEE
T ss_pred EeeecCCCHH---HHHHHHHhhcCCceeEEE
Confidence 9999987543 344455566666554433
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.27 E-value=0.0062 Score=45.61 Aligned_cols=67 Identities=19% Similarity=0.072 Sum_probs=50.2
Q ss_pred CEEEEEeccchHH-HHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~-AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
|||=|||.|=+|- ++|+.|++. |+.|...++...+..+..++.|+... .....+-+.++|+||...-
T Consensus 2 ~~ihfiGIgG~GMs~LA~~L~~~------G~~VsGSD~~~~~~t~~L~~~Gi~i~---~gh~~~~i~~~d~vV~SsA 69 (89)
T d1j6ua1 2 MKIHFVGIGGIGMSAVALHEFSN------GNDVYGSNIEETERTAYLRKLGIPIF---VPHSADNWYDPDLVIKTPA 69 (89)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCEEEEECSSCCHHHHHHHHTTCCEE---SSCCTTSCCCCSEEEECTT
T ss_pred cEEEEEeECHHHHHHHHHHHHhC------CCeEEEEeCCCChhHHHHHHCCCeEE---eeecccccCCCCEEEEecC
Confidence 7899999999997 789999999 99987666555556677788897541 2333455788999988643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.21 E-value=0.0017 Score=53.68 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=52.0
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC------ceecCCCcCCHHhhcCcC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG------FTEENGTLGDIYETISGS 179 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G------~~~~~~~~~~~~e~v~~A 179 (317)
.+++| |+|.|||.|-.+.+++..|.+. | ++.+.+|..++..+.+.... ... .....+.+....++
T Consensus 14 ~~~~~-k~vlIlGaGG~arai~~aL~~~------~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 84 (177)
T d1nvta1 14 GRVKD-KNIVIYGAGGAARAVAFELAKD------N-NIIIANRTVEKAEALAKEIAEKLNKKFGE-EVKFSGLDVDLDGV 84 (177)
T ss_dssp CCCCS-CEEEEECCSHHHHHHHHHHTSS------S-EEEEECSSHHHHHHHHHHHHHHHTCCHHH-HEEEECTTCCCTTC
T ss_pred CCcCC-CEEEEECCcHHHHHHHHHHccc------c-ceeeehhhhhHHHHHHHHHHHhhchhhhh-hhhhhhhhhccchh
Confidence 46899 9999999999999999999766 7 78888886443322222110 000 00133566677899
Q ss_pred CEEEEccCCch
Q 021114 180 DLVLLLISDAA 190 (317)
Q Consensus 180 DvVILavP~~~ 190 (317)
|+||.++|...
T Consensus 85 dliIn~tp~g~ 95 (177)
T d1nvta1 85 DIIINATPIGM 95 (177)
T ss_dssp CEEEECSCTTC
T ss_pred hhhccCCcccc
Confidence 99999999754
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.20 E-value=0.0026 Score=52.94 Aligned_cols=71 Identities=23% Similarity=0.313 Sum_probs=48.4
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEcc
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLI 186 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILav 186 (317)
||||.|+| .|.+|.++++.|.+. |++|++..|+.++.. .....++....+... +++++++++|+||.++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~------g~~V~~~~R~~~~~~-~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~ 75 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQA------GYEVTVLVRDSSRLP-SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLL 75 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCGGGSC-SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC------cCEEEEEEcChhhcc-cccccccccccccccchhhHHHHhcCCCEEEEEe
Confidence 59999999 799999999999999 999887776543211 111122221112233 3456799999999987
Q ss_pred CC
Q 021114 187 SD 188 (317)
Q Consensus 187 P~ 188 (317)
..
T Consensus 76 g~ 77 (205)
T d1hdoa_ 76 GT 77 (205)
T ss_dssp CC
T ss_pred cc
Confidence 53
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0017 Score=52.97 Aligned_cols=94 Identities=19% Similarity=0.207 Sum_probs=60.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CC-CcCC-HHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NG-TLGD-IYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~-~~~~-~~e~v~~ADvVILa 185 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++..+ +++..+.+++.|.... +. ...+ .+......|+|+.+
T Consensus 27 ~g-~~vlI~GaG~vG~~a~q~ak~~------G~~vi~~~~-~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~ 98 (168)
T d1piwa2 27 PG-KKVGIVGLGGIGSMGTLISKAM------GAETYVISR-SSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVC 98 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHH------TCEEEEEES-SSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEEC
T ss_pred CC-CEEEEECCCCcchhHHHHhhhc------ccccccccc-chhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEE
Confidence 57 9999999999999999999998 998766554 4556788999885321 00 0112 22334567888887
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+...... .++...+.++++-.++..
T Consensus 99 ~~~~~~~-~~~~~~~~l~~~G~iv~~ 123 (168)
T d1piwa2 99 ASSLTDI-DFNIMPKAMKVGGRIVSI 123 (168)
T ss_dssp CSCSTTC-CTTTGGGGEEEEEEEEEC
T ss_pred ecCCccc-hHHHHHHHhhccceEEEe
Confidence 6543211 133445566666555544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.12 E-value=0.01 Score=47.31 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHh----hcCcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e----~v~~ADvVI 183 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++. ..+++..+.+++.|+..- +....+..+ .-.+.|.++
T Consensus 27 ~g-~~vlv~G~G~iG~~a~~~a~~~------g~~v~~~-~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PG-EWVAIYGIGGLGHVAVQYAKAM------GLNVVAV-DIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TT-CEEEEECCSTTHHHHHHHHHHT------TCEEEEE-CSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeecccchhhhhHHHhcC------CCeEecc-CCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEE
Confidence 57 9999999999999999999998 9886554 445566788889886431 111123332 335567777
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
..+... ..++.....++++..++..+
T Consensus 99 ~~~~~~---~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 99 VTAVSK---PAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp ESSCCH---HHHHHHHHHEEEEEEEEECC
T ss_pred eecCCH---HHHHHHHHHhccCCceEecc
Confidence 776543 45666677788877777554
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.10 E-value=0.004 Score=56.55 Aligned_cols=91 Identities=18% Similarity=0.108 Sum_probs=62.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCCcccH---HHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s~---~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++++|||.|.|+..+++.+... +.+ +|.++.|..++.. +.....++.. ..+.++++.+||+|+.+|+
T Consensus 126 ~~l~iiGaG~QA~~~~~al~~~-----~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~----~~~~~~a~~~aDiV~taT~ 196 (320)
T d1omoa_ 126 SVFGFIGCGTQAYFQLEALRRV-----FDIGEVKAYDVREKAAKKFVSYCEDRGISA----SVQPAEEASRCDVLVTTTP 196 (320)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----SCCCEEEEECSSHHHHHHHHHHHHHTTCCE----EECCHHHHTSSSEEEECCC
T ss_pred cEEEEecCcccHHHHHHHHHHH-----hhhhhcccccCCHHHHHHHHHHHHhcCCcc----ccchhhhhccccEEEEecc
Confidence 7899999999999999999875 144 5666766543222 2233344443 3466788999999999998
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCch
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv~ 215 (317)
-..- +++ .+.+++|+.|..+++..
T Consensus 197 s~~P--~~~--~~~l~~G~hv~~iGs~~ 220 (320)
T d1omoa_ 197 SRKP--VVK--AEWVEEGTHINAIGADG 220 (320)
T ss_dssp CSSC--CBC--GGGCCTTCEEEECSCCS
T ss_pred Cccc--ccc--hhhcCCCCeEeecCCcc
Confidence 5321 332 24689999988777653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.09 E-value=0.0085 Score=48.11 Aligned_cols=92 Identities=20% Similarity=0.244 Sum_probs=60.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc----CcCCEEE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI----SGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v----~~ADvVI 183 (317)
+| .+|.|+|.|.+|...++.++.. |.+|++. +.++...+.+++.|.... +....+..|.+ ...|.++
T Consensus 27 ~g-~~VlV~GaG~vG~~~~~~ak~~------G~~Vi~~-~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i 98 (166)
T d1llua2 27 PG-QWVAISGIGGLGHVAVQYARAM------GLHVAAI-DIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVL 98 (166)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEE-ESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CC-CEEEEeeccccHHHHHHHHHHc------CCcccee-cchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccc
Confidence 47 9999999999999999999998 9876554 455666788888886421 11122333322 2346666
Q ss_pred EccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 184 LavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
.++... +.+++..+.++++-.++.+
T Consensus 99 ~~~~~~---~~~~~~~~~l~~~G~iv~~ 123 (166)
T d1llua2 99 VTAVSN---SAFGQAIGMARRGGTIALV 123 (166)
T ss_dssp ECCSCH---HHHHHHHTTEEEEEEEEEC
T ss_pred cccccc---hHHHHHHHHhcCCcEEEEE
Confidence 665543 3455566677776666544
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.07 E-value=0.013 Score=48.34 Aligned_cols=74 Identities=18% Similarity=0.070 Sum_probs=40.5
Q ss_pred CEEEEEeccchHH--HHHHHHHhhhhhhcCCc-eEEEEecCCccc-HHHH---------HHCCceecCCCcCCHHhhcCc
Q 021114 112 NQIGVIGWGSQGP--AQAQNLRDSLAEAKSDI-VVKVGLRKGSRS-FAEA---------RAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 112 kkIGIIG~G~mG~--AiA~~Lr~~~~~~~~G~-~Vivg~r~~~~s-~~~A---------~~~G~~~~~~~~~~~~e~v~~ 178 (317)
+||.|||.|+.|. +++..++.. + .+.. +++ -.|.++.. ..++ .+.+....-...+|..+++++
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~-~--~~~~~eI~-L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~g 77 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRY-H--ELPVGELW-LVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDG 77 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTT-T--TCCEEEEE-EECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTT
T ss_pred cEEEEECCChhhHHHHHHHHHHhc-c--ccCCCEEE-EEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCC
Confidence 6899999999874 444444443 1 0111 444 44433321 1111 112221111124678899999
Q ss_pred CCEEEEccCCc
Q 021114 179 SDLVLLLISDA 189 (317)
Q Consensus 179 ADvVILavP~~ 189 (317)
||+|+++....
T Consensus 78 aDvVv~ta~~~ 88 (169)
T d1s6ya1 78 ADFVTTQFRVG 88 (169)
T ss_dssp CSEEEECCCTT
T ss_pred CCEEEEccccC
Confidence 99999998754
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.06 E-value=0.0021 Score=54.00 Aligned_cols=98 Identities=12% Similarity=0.047 Sum_probs=61.0
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHH-----HCCcee-cCCCcCCHHhhcCc
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----AAGFTE-ENGTLGDIYETISG 178 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~-----~~G~~~-~~~~~~~~~e~v~~ 178 (317)
.+++| |++.|||-++ .|.++|.-|.+. |..|............... ..+..+ ...+...+.+.+.+
T Consensus 25 ~~l~G-K~vvVIGrS~iVG~Pla~lL~~~------gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~ 97 (171)
T d1edza1 25 NRLYG-KKCIVINRSEIVGRPLAALLAND------GATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLD 97 (171)
T ss_dssp CTTTT-CEEEEECCCTTTHHHHHHHHHTT------SCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHH
T ss_pred CCCCC-CEEEEECCccccHHHHHHHHHHC------CCEEEEeccccccccccccceeeeeeccccccccchhHHhhcccc
Confidence 48999 9999999775 599999999998 8877665433211000000 000000 00001125677789
Q ss_pred CCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 179 ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
||+||.+++..... + -.+++|+|++++|++..
T Consensus 98 aDIvIsavG~p~~~--i--~~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 98 SDVVITGVPSENYK--F--PTEYIKEGAVCINFACT 129 (171)
T ss_dssp CSEEEECCCCTTCC--B--CTTTSCTTEEEEECSSS
T ss_pred CCEEEEccCCCccc--c--ChhhcccCceEeecccc
Confidence 99999999864320 1 12457999999999853
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.06 E-value=0.003 Score=51.65 Aligned_cols=95 Identities=13% Similarity=-0.006 Sum_probs=53.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhh--hhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDS--LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~--~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP~ 188 (317)
||||||| .|..|+-+.+.|.+. ++ ..++.....+.. ..+....+............+.++++|+||+|+|.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p----~~~i~~~ss~~~--~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~ 74 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFD----LIEPVFFSTSQI--GVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG 74 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGG----GSEEEEEESSCC--SSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCC----ceEEEEeccccc--cccccccCCcceeeecccchhhhccccEEEEecCc
Confidence 6899999 899999999877642 11 123332222111 00001111110000011223457899999999998
Q ss_pred chHHHHHHHHHhcCCCCcEEEEecC
Q 021114 189 AAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 189 ~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
....++.+++.+. ..+.+|+|.++
T Consensus 75 ~~s~~~~~~l~~~-g~~~~VIDlSs 98 (147)
T d1mb4a1 75 SYTEKVYPALRQA-GWKGYWIDAAS 98 (147)
T ss_dssp HHHHHHHHHHHHT-TCCSEEEESSS
T ss_pred hHHHHHhHHHHHc-CCceEEEeCCc
Confidence 8877777776553 22357888776
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=96.02 E-value=0.015 Score=47.93 Aligned_cols=76 Identities=17% Similarity=0.171 Sum_probs=41.9
Q ss_pred CEEEEEeccchHHHHHH--HHHhhhhhhcCCceEEEEecCCcccHHH--------HHHCCceecCCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAE--------ARAAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~--~Lr~~~~~~~~G~~Vivg~r~~~~s~~~--------A~~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
+||+|||.|+.|.+.+. .|... +...+.++++ .|.+++..+. ....+....-....|.+|++++||+
T Consensus 3 mKI~iIGaGsvg~t~~~~~~l~~~--~~l~~~eivL-~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~ 79 (171)
T d1obba1 3 VKIGIIGAGSAVFSLRLVSDLCKT--PGLSGSTVTL-MDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADF 79 (171)
T ss_dssp CEEEEETTTCHHHHHHHHHHHHTC--GGGTTCEEEE-ECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred cEEEEECCCHHHhHHHHHHHHHhc--cccCCCEEEE-EeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence 89999999999976543 23221 0000235544 4444332211 1112211100124689999999999
Q ss_pred EEEccCCch
Q 021114 182 VLLLISDAA 190 (317)
Q Consensus 182 VILavP~~~ 190 (317)
|+.+.-...
T Consensus 80 Vv~~~~~g~ 88 (171)
T d1obba1 80 VINTAMVGG 88 (171)
T ss_dssp EEECCCTTH
T ss_pred Eeeeccccc
Confidence 999875544
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.02 E-value=0.0031 Score=51.22 Aligned_cols=69 Identities=20% Similarity=0.148 Sum_probs=40.5
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcc--cHHHHHH--C--CceecCC----CcCCHHhhcCc
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSR--SFAEARA--A--GFTEENG----TLGDIYETISG 178 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~--s~~~A~~--~--G~~~~~~----~~~~~~e~v~~ 178 (317)
|||+|||. |.+|.++|..|... +. ++.+.+..... ....+.+ . .....+. ...+..+.+++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~------~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~ 74 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKE------PFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDE 74 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTC------TTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTT
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhcc
Confidence 68999995 99999999999888 74 55555443211 1111111 0 0100000 01223467899
Q ss_pred CCEEEEcc
Q 021114 179 SDLVLLLI 186 (317)
Q Consensus 179 ADvVILav 186 (317)
||+||++.
T Consensus 75 aDvVVitA 82 (145)
T d1hyea1 75 SDVVIITS 82 (145)
T ss_dssp CSEEEECC
T ss_pred ceEEEEec
Confidence 99999983
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.02 E-value=0.0065 Score=50.47 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=53.0
Q ss_pred ccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----C--ceecC-CCcCCHHhhc
Q 021114 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----G--FTEEN-GTLGDIYETI 176 (317)
Q Consensus 105 ~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G--~~~~~-~~~~~~~e~v 176 (317)
..+|+| |++.|.| .|-||.++|+.|.+. |.+|++..|+.++..+.+.+. . +...| ....+.++++
T Consensus 18 ~~~l~g-K~vlItGasgGIG~~ia~~la~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 90 (191)
T d1luaa1 18 GGSVKG-KKAVVLAGTGPVGMRSAALLAGE------GAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAV 90 (191)
T ss_dssp TSCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHT
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHhh------ccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHh
Confidence 478999 9999999 799999999999999 999888877654332222221 1 11101 1123456778
Q ss_pred CcCCEEEEccC
Q 021114 177 SGSDLVLLLIS 187 (317)
Q Consensus 177 ~~ADvVILavP 187 (317)
.++|+||.+..
T Consensus 91 ~~iDilin~Ag 101 (191)
T d1luaa1 91 KGAHFVFTAGA 101 (191)
T ss_dssp TTCSEEEECCC
T ss_pred cCcCeeeecCc
Confidence 89999998765
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=95.97 E-value=0.012 Score=47.79 Aligned_cols=76 Identities=22% Similarity=0.327 Sum_probs=53.6
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCC---cCCHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT---LGDIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~---~~~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|....... ....++.. ...|
T Consensus 28 ~G-dtVlV~GaGG~G~~~~~~~~~~------g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 28 QG-STCAVFGLGGVGLSVIMGCKAA------GAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CC-CEEEEECCCCcHHHHHHHHHHc------CCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCC
Confidence 57 9999999999999999999998 87555666766777889999886531000 01122222 2479
Q ss_pred EEEEccCCchH
Q 021114 181 LVLLLISDAAQ 191 (317)
Q Consensus 181 vVILavP~~~~ 191 (317)
++|-++.....
T Consensus 101 ~vid~~G~~~~ 111 (176)
T d2jhfa2 101 FSFEVIGRLDT 111 (176)
T ss_dssp EEEECSCCHHH
T ss_pred EEEecCCchhH
Confidence 98888876543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.94 E-value=0.031 Score=45.61 Aligned_cols=75 Identities=25% Similarity=0.298 Sum_probs=53.7
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCC--HHhhc-----CcC
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD--IYETI-----SGS 179 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~--~~e~v-----~~A 179 (317)
-+| .+|.|+|.|-+|...++.++.. |...++..+.+++..+.+++.|.... |....| .+++. ...
T Consensus 26 ~~G-~~VlV~GaGgvGl~a~~~ak~~------G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 26 TPG-STCAVFGLGGVGFSAIVGCKAA------GASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CTT-CEEEEECCSHHHHHHHHHHHHH------TCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCC-CEEEEECCCchhHHHHHHHHHc------CCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCC
Confidence 457 9999999999999999999999 97656677777778899999996531 000111 22322 247
Q ss_pred CEEEEccCCc
Q 021114 180 DLVLLLISDA 189 (317)
Q Consensus 180 DvVILavP~~ 189 (317)
|+||-++...
T Consensus 99 d~vid~~g~~ 108 (174)
T d1p0fa2 99 DYAVECAGRI 108 (174)
T ss_dssp SEEEECSCCH
T ss_pred cEEEEcCCCc
Confidence 8888887654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.84 E-value=0.011 Score=49.67 Aligned_cols=97 Identities=21% Similarity=0.206 Sum_probs=67.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecC-CCcCCHHhhc------CcCCE
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-GTLGDIYETI------SGSDL 181 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~-~~~~~~~e~v------~~ADv 181 (317)
+| .+|.|+|.|.+|...++.++.. |...++..+.++..++.|++.|..... ....+..+.+ ..+|+
T Consensus 25 ~G-~tVlV~GaG~vGl~a~~~ak~~------ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~ 97 (195)
T d1kola2 25 PG-STVYVAGAGPVGLAAAASARLL------GAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDC 97 (195)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEE
T ss_pred CC-CEEEEECcCHHHHHHHHHHHhh------cccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEE
Confidence 57 9999999999999999988887 775555666666778899999875421 1122333322 24799
Q ss_pred EEEccCCc------------hHHHHHHHHHhcCCCCcEEEEec
Q 021114 182 VLLLISDA------------AQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 182 VILavP~~------------~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|-++--. ...+.+++....++++-.|+.++
T Consensus 98 vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 98 AVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp EEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 99887522 12357777777888887776554
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0096 Score=49.82 Aligned_cols=91 Identities=13% Similarity=0.079 Sum_probs=55.8
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEe-cC-CcccHHHHHH--CCceecCCCcCCHHhhcCcCCEEEEc
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGL-RK-GSRSFAEARA--AGFTEENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~-r~-~~~s~~~A~~--~G~~~~~~~~~~~~e~v~~ADvVILa 185 (317)
|+|||||| .|..|+-+.+.|.+. . .+++.... ++ ..+....... .+-. .-...+.++..+++|+|+++
T Consensus 1 MikVaIvGATGyvG~eLirlL~~H-P----~~ei~~l~s~~~aG~~i~~~~p~~~~~~--~~~~~~~~~~~~~~dvvf~a 73 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNH-P----EAKITYLSSRTYAGKKLEEIFPSTLENS--ILSEFDPEKVSKNCDVLFTA 73 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHC-T----TEEEEEEECSTTTTSBHHHHCGGGCCCC--BCBCCCHHHHHHHCSEEEEC
T ss_pred CeEEEEECCCcHHHHHHHHHHHhC-C----CceEEEeeccccCCCcccccCchhhccc--cccccCHhHhccccceEEEc
Confidence 57999999 899999999988765 1 23443222 22 1222222111 1111 01134667777889999999
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|.....+... .. .+..|+|.++
T Consensus 74 ~p~~~s~~~~~----~~-~~~~VIDlSa 96 (176)
T d1vkna1 74 LPAGASYDLVR----EL-KGVKIIDLGA 96 (176)
T ss_dssp CSTTHHHHHHT----TC-CSCEEEESSS
T ss_pred cccHHHHHHHH----hh-ccceEEecCc
Confidence 99877655443 23 4678888776
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.03 Score=45.57 Aligned_cols=75 Identities=13% Similarity=-0.004 Sum_probs=42.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH-------CCceecCCCcCCHHhhcCcCCEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~-------~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|||+|||.|+.|.+++-............-++.+. |.+++..+.+.+ ..... ....+.++.+++||+|++
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~-Did~~k~~~~~d~~~~~~~~~~~~--~~t~~~~~~l~~aDvVVi 77 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFY-DIDEEKQKIVVDFVKRLVKDRFKV--LISDTFEGAVVDAKYVIF 77 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEE-CSCHHHHHHHHHHHHHHHTTSSEE--EECSSHHHHHTTCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEE-ecCcHHHHHHHHHHHhhhccCceE--EEecCcccccCCCCEEEE
Confidence 68999999999988875432210000001245444 444433332221 12111 124578899999999999
Q ss_pred ccCCc
Q 021114 185 LISDA 189 (317)
Q Consensus 185 avP~~ 189 (317)
+.-..
T Consensus 78 ta~~~ 82 (162)
T d1up7a1 78 QFRPG 82 (162)
T ss_dssp CCCTT
T ss_pred ecccC
Confidence 87643
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0076 Score=48.78 Aligned_cols=91 Identities=16% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCC---HHhhcCcCCEEEEc
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLL 185 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~---~~e~v~~ADvVILa 185 (317)
+| .+|.|+|.|.+|...++.++.. |.++++..++ ++..+.+++.|.... -...+ ..+..+..|+++-+
T Consensus 30 ~G-~~VlI~GaG~vG~~a~qlak~~------Ga~~i~~~~~-~~~~~~a~~lGad~~-i~~~~~~~~~~~~~~~D~vid~ 100 (168)
T d1uufa2 30 PG-KKVGVVGIGGLGHMGIKLAHAM------GAHVVAFTTS-EAKREAAKALGADEV-VNSRNADEMAAHLKSFDFILNT 100 (168)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS-GGGHHHHHHHTCSEE-EETTCHHHHHTTTTCEEEEEEC
T ss_pred CC-CEEEEeccchHHHHHHHHhhcc------cccchhhccc-hhHHHHHhccCCcEE-EECchhhHHHHhcCCCceeeee
Confidence 57 9999999999999999999998 9987765554 455678888885321 00112 22234568999998
Q ss_pred cCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 186 vP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+..... ++.....++++-.++..
T Consensus 101 ~g~~~~---~~~~~~~l~~~G~iv~~ 123 (168)
T d1uufa2 101 VAAPHN---LDDFTTLLKRDGTMTLV 123 (168)
T ss_dssp CSSCCC---HHHHHTTEEEEEEEEEC
T ss_pred eecchh---HHHHHHHHhcCCEEEEe
Confidence 875432 33445566666555544
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=95.75 E-value=0.036 Score=45.87 Aligned_cols=95 Identities=15% Similarity=0.197 Sum_probs=58.2
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecCC--------------CcCCHHhh
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENG--------------TLGDIYET 175 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~~--------------~~~~~~e~ 175 (317)
|++|||-|+|.||..+.+.+... -+++++.-++... .....+...++..... ...+..++
T Consensus 1 M~~VgINGfGRIGR~v~R~l~~~-----~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~ 75 (171)
T d1cf2o1 1 MKAVAINGYGTVGKRVADAIAQQ-----DDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDM 75 (171)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTS-----SSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHH
T ss_pred CeEEEEEcCcHHHHHHHHHHHhC-----CCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHh
Confidence 57999999999999999988776 0356554444332 2234445555332100 01245566
Q ss_pred cCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 176 v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
.+++|+|+=|+|.....+-.+. +++.|+-+++.++
T Consensus 76 ~~~vDvViEcTG~f~~~~~~~~---hl~~G~K~vi~~~ 110 (171)
T d1cf2o1 76 LDEADIVIDCTPEGIGAKNLKM---YKEKGIKAIFQGG 110 (171)
T ss_dssp HHTCSEEEECCSTTHHHHHHHH---HHHTTCEEEECTT
T ss_pred hcCCCEEEEccCCCCCHHHHHH---HHHcCCCEEEECC
Confidence 7889999999998765554444 3444555555543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0086 Score=47.78 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=32.1
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~ 147 (317)
...|+| +++.|||.|.+|..-++.|.+. |.+|++..
T Consensus 8 ~~~l~g-krvLViGgG~va~~ka~~Ll~~------GA~VtVva 43 (150)
T d1kyqa1 8 AHQLKD-KRILLIGGGEVGLTRLYKLMPT------GCKLTLVS 43 (150)
T ss_dssp EECCTT-CEEEEEEESHHHHHHHHHHGGG------TCEEEEEE
T ss_pred heeeCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEe
Confidence 467999 9999999999999999999999 99876664
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=95.65 E-value=0.049 Score=43.67 Aligned_cols=75 Identities=20% Similarity=0.288 Sum_probs=52.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCc--CCHHhhc-----CcCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTL--GDIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~--~~~~e~v-----~~AD 180 (317)
+| .+|.|+|.|-+|...++.++.. |...++..+++++..+.+++.|.... +... ...++.. ...|
T Consensus 28 ~g-~~VlI~G~Gg~g~~~~~~~~~~------g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 28 PG-STCAVFGLGAVGLAAVMGCHSA------GAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CC-CEEEEEecCCccchHHHHHHHH------hhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcc
Confidence 56 8999999999999999999988 77656677777777899999996431 0000 0112222 2478
Q ss_pred EEEEccCCch
Q 021114 181 LVLLLISDAA 190 (317)
Q Consensus 181 vVILavP~~~ 190 (317)
+|+-++-...
T Consensus 101 ~vid~~G~~~ 110 (175)
T d1cdoa2 101 FSLECVGNVG 110 (175)
T ss_dssp EEEECSCCHH
T ss_pred eeeeecCCHH
Confidence 8888876543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.52 E-value=0.053 Score=44.33 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=41.4
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (317)
+| .+|.|+|.|-+|...++.++.. |...++..+.+++.++.|++.|..
T Consensus 29 ~g-~tVlI~G~GgvGl~ai~~ak~~------G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 29 PG-STCVVFGLGGVGLSVIMGCKSA------GASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CC-CEEEEECCCchhHHHHHHHHHc------CCceEEEecCcHHHHHHHHhcCCc
Confidence 57 9999999999999999999999 975556777777888999998875
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=95.41 E-value=0.071 Score=43.97 Aligned_cols=94 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCc-ccHHHHHHCCceecC--------------CCcCCHHhhc
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEEN--------------GTLGDIYETI 176 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~-~s~~~A~~~G~~~~~--------------~~~~~~~e~v 176 (317)
.||||.|+|.||..+.+.+... .+++++..++..+ .....+.+.++.... ....+..++.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~-----~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQ-----DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLL 77 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTC-----TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHhC-----CCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhh
Confidence 6899999999999999999765 1466654444432 223345555532100 0123566677
Q ss_pred CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 177 ~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+++|+|+=|++.....+-.+. |++.|+-.++.++
T Consensus 78 ~~vDvViEcTG~f~~~~~~~~---hl~~G~k~Vi~s~ 111 (172)
T d2czca2 78 EKVDIIVDATPGGIGAKNKPL---YEKAGVKAIFQGG 111 (172)
T ss_dssp TTCSEEEECCSTTHHHHHHHH---HHHHTCEEEECTT
T ss_pred ccCCEEEECCCCCCCHHHHHH---HHHcCCCEEEECC
Confidence 899999999998776555443 3344554444443
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.35 E-value=0.034 Score=44.73 Aligned_cols=68 Identities=10% Similarity=0.040 Sum_probs=40.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc-----e-EEEEecCCcccHHHHHH-------CCc--eecCCCcCCHHhh
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI-----V-VKVGLRKGSRSFAEARA-------AGF--TEENGTLGDIYET 175 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~-----~-Vivg~r~~~~s~~~A~~-------~G~--~~~~~~~~~~~e~ 175 (317)
+||.||| .|.+|.++|..|... ++ . .++-.+.+ +....+.. ..+ ........+.++.
T Consensus 4 ~KV~IiGA~G~VG~~la~~l~~~------~~~~~~~~~~L~l~d~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 76 (154)
T d5mdha1 4 IRVLVTGAAGQIAYSLLYSIGNG------SVFGKDQPIILVLLDIT-PMMGVLDGVLMELQDCALPLLKDVIATDKEEIA 76 (154)
T ss_dssp EEEEESSTTSHHHHTTHHHHHTT------TTTCTTCCEEEEEECCG-GGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHHH------HhcCCCCccEEEEecCc-cchhhhhhhhhhhcccccccccccccCcccccc
Confidence 6999999 599999999998764 22 1 22223322 22222111 110 0000113577889
Q ss_pred cCcCCEEEEcc
Q 021114 176 ISGSDLVLLLI 186 (317)
Q Consensus 176 v~~ADvVILav 186 (317)
++++|+||++-
T Consensus 77 ~~~~dvVVita 87 (154)
T d5mdha1 77 FKDLDVAILVG 87 (154)
T ss_dssp TTTCSEEEECC
T ss_pred cCCceEEEEec
Confidence 99999999976
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.31 E-value=0.013 Score=47.14 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|. |.+|...++.++.. |...++..+.+++..+.+++.|.
T Consensus 27 ~g-~~vlV~G~~G~vG~~~~~~~~~~------g~~~V~~~~~~~~~~~~~~~~Ga 74 (170)
T d1jvba2 27 PT-KTLLVVGAGGGLGTMAVQIAKAV------SGATIIGVDVREEAVEAAKRAGA 74 (170)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHH------TCCEEEEEESSHHHHHHHHHHTC
T ss_pred CC-CEEEEEeccccceeeeeeccccc------ccccccccccchhhHHHHHHcCC
Confidence 46 89999995 99999999999988 86444555555666777887775
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=95.27 E-value=0.037 Score=44.52 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=20.2
Q ss_pred CEEEEEec-cchHHHHHHHHHhh
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~ 133 (317)
+||.|||. |.+|.++|..|...
T Consensus 5 ~KV~IiGA~G~VG~~~a~~l~~~ 27 (154)
T d1y7ta1 5 VRVAVTGAAGQIGYSLLFRIAAG 27 (154)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhc
Confidence 69999996 99999999999876
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=95.05 E-value=0.0083 Score=48.50 Aligned_cols=68 Identities=24% Similarity=0.338 Sum_probs=39.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCc--ccHHHHHHC----Cceec-CCCcCCHHhhcCcCCE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAA----GFTEE-NGTLGDIYETISGSDL 181 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~--~s~~~A~~~----G~~~~-~~~~~~~~e~v~~ADv 181 (317)
.||+||| .|.+|.++|..|... +. ++.+.+.... .....+.+. .+... .-...+. +.+++||+
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~------~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~-~~~~~aDi 73 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALR------DIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY-EDTAGSDV 73 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHT------TCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG-GGGTTCSE
T ss_pred CeEEEECCCCcHHHHHHHHHHhC------CCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH-HHhhhcCE
Confidence 3899999 699999999999988 65 4544442211 111122211 11100 0012344 45689999
Q ss_pred EEEcc
Q 021114 182 VLLLI 186 (317)
Q Consensus 182 VILav 186 (317)
|+++.
T Consensus 74 Vvita 78 (142)
T d1o6za1 74 VVITA 78 (142)
T ss_dssp EEECC
T ss_pred EEEec
Confidence 99974
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=94.83 E-value=0.059 Score=44.33 Aligned_cols=75 Identities=23% Similarity=0.086 Sum_probs=40.0
Q ss_pred CEEEEEeccchHHHHH-HHHHhhhhhhcCCceEEEEecCCcccHH---HH-----HHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGWGSQGPAQA-QNLRDSLAEAKSDIVVKVGLRKGSRSFA---EA-----RAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA-~~Lr~~~~~~~~G~~Vivg~r~~~~s~~---~A-----~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.||+|||.|+.|.+.+ ..+...+++- .+-+++ ..|.+++..+ .. ...+....-....|..|++++||+|
T Consensus 4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l-~~~eiv-L~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~V 81 (167)
T d1u8xx1 4 FSIVIAGGGSTFTPGIVLMLLDHLEEF-PIRKLK-LYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFV 81 (167)
T ss_dssp EEEEEECTTSSSHHHHHHHHHHTTTTS-CEEEEE-EECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEE
T ss_pred ceEEEECCChhhhHHHHHHHHhhhhhc-CCCEEE-EEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEE
Confidence 6899999999987633 2332221110 012444 4444433222 11 1112110011246889999999999
Q ss_pred EEccCC
Q 021114 183 LLLISD 188 (317)
Q Consensus 183 ILavP~ 188 (317)
|++.-.
T Consensus 82 vitag~ 87 (167)
T d1u8xx1 82 MAHIRV 87 (167)
T ss_dssp EECCCT
T ss_pred EECCCc
Confidence 999755
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.77 E-value=0.0066 Score=48.96 Aligned_cols=91 Identities=14% Similarity=0.032 Sum_probs=54.0
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCc---eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
++||||| .|..|.-+.+.|.+. ++ ++.....+.. .-+.......+ -.......+...++|++++++|
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~------~hP~~~l~~~~s~~~--~Gk~i~~~~~~-~~~~~~~~~~~~~~d~vf~a~p 73 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDER------DFPLHRLHLLASAES--AGQRMGFAESS-LRVGDVDSFDFSSVGLAFFAAA 73 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHT------TCCCSCEEEEECTTT--TTCEEEETTEE-EECEEGGGCCGGGCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhc------CCCceEEEEEeeccc--CCcceeecccc-chhccchhhhhccceEEEecCC
Confidence 7899999 499999999999654 32 3332222111 00000011110 0001122345678999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.....++..++. +.|..|+|.++.
T Consensus 74 ~~~s~~~~~~~~---~~g~~VID~Ss~ 97 (144)
T d2hjsa1 74 AEVSRAHAERAR---AAGCSVIDLSGA 97 (144)
T ss_dssp HHHHHHHHHHHH---HTTCEEEETTCT
T ss_pred cchhhhhccccc---cCCceEEeechh
Confidence 877767766654 368899988874
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.03 Score=45.12 Aligned_cols=71 Identities=21% Similarity=0.130 Sum_probs=40.1
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH--CCc--e-ecCCCcCCHHhhcCcCCEEEEc
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--AGF--T-EENGTLGDIYETISGSDLVLLL 185 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~--~G~--~-~~~~~~~~~~e~v~~ADvVILa 185 (317)
|||+||| .|.+|.++|..|...+ +...++.+.+. .+.....+.+ ... . .......+..+.+++||+||++
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~---~~~~el~L~D~-~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvit 76 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQL---PSGSELSLYDI-APVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLIS 76 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHS---CTTCEEEEECS-STTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEEC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCC---CCCcEEEEecc-cccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEEC
Confidence 6899999 5999999998875320 11335555443 3332223322 110 0 0000012345678999999998
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 77 a 77 (145)
T d2cmda1 77 A 77 (145)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=94.55 E-value=0.077 Score=43.89 Aligned_cols=72 Identities=24% Similarity=0.179 Sum_probs=40.5
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHHH----HHH--CC-c--eecCCCcCCHHhhcCcC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAE----ARA--AG-F--TEENGTLGDIYETISGS 179 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~~----A~~--~G-~--~~~~~~~~~~~e~v~~A 179 (317)
.||.|+|. |.+|.+++..|.... =+|. .+.+..-...+.... +.+ .. + ...-...++..+.++++
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~---v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~a 101 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGE---VFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDV 101 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTT---TTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred cEEEEECCCcHHHHHHHHHHHcCc---ccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCC
Confidence 58999995 999999999987640 0022 222222111121211 111 11 0 00001146788999999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+||+.-
T Consensus 102 DvVvi~a 108 (175)
T d7mdha1 102 DWALLIG 108 (175)
T ss_dssp SEEEECC
T ss_pred ceEEEee
Confidence 9999986
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.53 E-value=0.02 Score=44.20 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=28.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.||||||.|-+|.-++...++. |+++++.+..
T Consensus 12 ~kigIlGgGQL~rMla~aA~~l------G~~v~v~d~~ 43 (111)
T d1kjqa2 12 TRVMLLGSGELGKEVAIECQRL------GVEVIAVDRY 43 (111)
T ss_dssp CEEEEESCSHHHHHHHHHHHTT------TCEEEEEESS
T ss_pred CEEEEEeCCHHHHHHHHHHHHC------CCEEEEEcCC
Confidence 7899999999999999999999 9998766543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=94.42 E-value=0.031 Score=47.93 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=32.1
Q ss_pred cCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 108 l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
|+| |++-|.|.+. ||.++|+.|.+. |++|++..|+.+
T Consensus 3 l~g-K~alItGas~GIG~aia~~l~~~------G~~V~~~~r~~~ 40 (241)
T d2a4ka1 3 LSG-KTILVTGAASGIGRAALDLFARE------GASLVAVDREER 40 (241)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 789 9999999765 999999999999 999988777643
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.041 Score=44.34 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=60.2
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| .+|.|+|. |.+|....+.++.. |.+|++..++ ++..+.+++.|...- |....+..+.+ +..|
T Consensus 28 ~g-~~VlV~Ga~G~vG~~aiq~a~~~------G~~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 28 AG-ESVLVHGASGGVGLAACQIARAY------GLKILGTAGT-EEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp TT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEecccccccccccccccc------Cccccccccc-ccccccccccCcccccccccccHHHHhhhhhccCCce
Confidence 57 99999995 99999999999998 9987666654 455678888886421 11112333332 2367
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+-++.. +.+++.+..++++-.++..
T Consensus 100 ~v~d~~g~----~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 100 IIIEMLAN----VNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp EEEESCHH----HHHHHHHHHEEEEEEEEEC
T ss_pred EEeecccH----HHHHHHHhccCCCCEEEEE
Confidence 77776652 3455566667776665544
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.31 E-value=0.012 Score=48.50 Aligned_cols=116 Identities=14% Similarity=0.120 Sum_probs=67.4
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccH-H-------HHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-A-------EARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~-~-------~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
.||+|+|+ |.||+.+++.+.+. .+++++.+.++..... . .....+... ..+++++.+.+|+|
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~-----~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~----~~~~~~~~~~~DVi 75 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALAL-----EGVQLGAALEREGSSLLGSDAGELAGAGKTGVTV----QSSLDAVKDDFDVF 75 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHS-----TTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCE----ESCSTTTTTSCSEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecccchhccchhhhhhccccCCcee----eccHHHHhcccceE
Confidence 68999995 99999999988765 1566655554321100 0 000112221 35777888999999
Q ss_pred EEccCCchHHHHHHHHHhcCCCCcEEEEecCchhhhhhhcccCCCCCccEEEeccCCC
Q 021114 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSIGLDFPKNIGVIAVCPKGM 240 (317)
Q Consensus 183 ILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv~l~~~~~~~~~l~~~i~vV~vhPn~p 240 (317)
|=-+.|....+.++....+= -.+|+=+.|+.-..++.. ....+.+.+ -..||+.
T Consensus 76 IDFs~p~~~~~~~~~a~~~~--~~~ViGTTG~~~~~~~~i-~~~a~~ipi-~~apN~S 129 (162)
T d1diha1 76 IDFTRPEGTLNHLAFCRQHG--KGMVIGTTGFDEAGKQAI-RDAAADIAI-VFAANFS 129 (162)
T ss_dssp EECSCHHHHHHHHHHHHHTT--CEEEECCCCCCHHHHHHH-HHHTTTSCE-EECSCCC
T ss_pred EEeccHHHHHHHHHHHHhcc--ceeEEecCCCcHHHHHHH-HHHcCCCCE-EEEcccc
Confidence 99999888777776444331 224554667743222210 011234443 5567764
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=94.25 E-value=0.12 Score=44.03 Aligned_cols=87 Identities=14% Similarity=0.107 Sum_probs=53.2
Q ss_pred cCCCCEEEEEec-c--chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGW-G--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~-G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|+| |++-|.|. | -||.++|+.|.+. |++|++..++. +..+... ...+....+.++..
T Consensus 3 L~g-K~alITGaag~~GIG~AiA~~la~~------Ga~V~i~~r~~-~~~~~~~------------~l~~~~~~~~~~~~ 62 (274)
T d2pd4a1 3 LKG-KKGLIVGVANNKSIAYGIAQSCFNQ------GATLAFTYLNE-SLEKRVR------------PIAQELNSPYVYEL 62 (274)
T ss_dssp TTT-CEEEEECCCSTTSHHHHHHHHHHTT------TCEEEEEESST-TTHHHHH------------HHHHHTTCCCEEEC
T ss_pred CCC-CEEEEECCCCCcHHHHHHHHHHHHC------CCEEEEEeCCH-HHHHHHH------------HHHhhCCceeEeee
Confidence 789 99999996 4 3999999999999 99998877763 2222221 12223344455444
Q ss_pred ccCCchH-HHHHHHHHhcCCCCcEEEEecCc
Q 021114 185 LISDAAQ-ADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 185 avP~~~~-~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
-+.+... .++++++...+.+=.+++...|.
T Consensus 63 d~~~~~~~~~~~~~~~~~~g~id~lV~nag~ 93 (274)
T d2pd4a1 63 DVSKEEHFKSLYNSVKKDLGSLDFIVHSVAF 93 (274)
T ss_dssp CTTCHHHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred cccchhhHHHHHHHHHHHcCCCCeEEeeccc
Confidence 4444443 34666666655433344445543
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.24 E-value=0.02 Score=46.22 Aligned_cols=91 Identities=14% Similarity=0.165 Sum_probs=53.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCc---eEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~---~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVILavP 187 (317)
-||||||. |-.|.-+.+.|.+. .+ ++.... + .++........... .......++...+.|++++++|
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H------~fp~~~l~~~~-s-~~s~G~~~~~~~~~-~~~~~~~~~~~~~~d~~f~~~~ 72 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEES------TLPIDKIRYLA-S-ARSAGKSLKFKDQD-ITIEETTETAFEGVDIALFSAG 72 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTC------CSCEEEEEEEE-C-GGGTTCEEEETTEE-EEEEECCTTTTTTCSEEEECSC
T ss_pred CEEEEECCCcHHHHHHHHHHHcC------CCCceEEEEec-c-cccccccccccCCc-ccccccchhhhhhhhhhhhccC
Confidence 68999995 99999999988665 43 222221 1 11110000000000 0001234456778999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.....+...+.. +.|..|+|.++.
T Consensus 73 ~~~s~~~~~~~~---~~~~~VIDlSsd 96 (154)
T d2gz1a1 73 SSTSAKYAPYAV---KAGVVVVDNTSY 96 (154)
T ss_dssp HHHHHHHHHHHH---HTTCEEEECSST
T ss_pred ccchhhHHhhhc---cccceehhcChh
Confidence 877666655544 368899988763
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=94.21 E-value=0.021 Score=46.45 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=29.7
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
-|||.|||.|.-|.+.|..|++. |++|.+.++.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~------G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIH------GLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTT------SCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 09999999999999999999999 9999888754
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.21 E-value=0.057 Score=44.23 Aligned_cols=96 Identities=10% Similarity=0.198 Sum_probs=57.6
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEE-EEecCC----cccHHHHHH--CCceec-CCCcCCHHhhcCcCCE
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKG----SRSFAEARA--AGFTEE-NGTLGDIYETISGSDL 181 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~----~~s~~~A~~--~G~~~~-~~~~~~~~e~v~~ADv 181 (317)
|+||+||| .|..|+-+.+.|.+. ..+++. +..+.. .+....... .+.... .....+.++...+.|+
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~H-----P~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 75 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRH-----PHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDV 75 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHC-----TTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCE
T ss_pred CcEEEEECcccHHHHHHHHHHHhC-----CCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccce
Confidence 58999999 899999999998874 034442 222221 122221110 111100 0002344455678999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
+++++|.....+......+ .+..++|.++-
T Consensus 76 vf~alp~~~s~~~~~~~~~---~~~~vIDlSad 105 (179)
T d2g17a1 76 VFLATAHEVSHDLAPQFLQ---AGCVVFDLSGA 105 (179)
T ss_dssp EEECSCHHHHHHHHHHHHH---TTCEEEECSST
T ss_pred eeccccchhHHHHhhhhhh---cCceeeccccc
Confidence 9999998877776665543 57788887763
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.18 E-value=0.021 Score=46.49 Aligned_cols=89 Identities=22% Similarity=0.236 Sum_probs=58.4
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHH---hhcCcCCEEEE
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---ETISGSDLVLL 184 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~---e~v~~ADvVIL 184 (317)
+| ++|.|.|. |.+|....+.++.. |.+|+...++ ++..+.+++.|....- ...+.. ..-..+|+|+=
T Consensus 27 ~g-~~VlI~ga~G~vG~~aiqlak~~------G~~vi~~~~~-~~~~~~~~~lGa~~~i-~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PG-EKVLVQAAAGALGTAAVQVARAM------GLRVLAAASR-PEKLALPLALGAEEAA-TYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHT------TCEEEEEESS-GGGSHHHHHTTCSEEE-EGGGHHHHHHHTTSEEEEEE
T ss_pred CC-CEEEEEeccccchhhhhhhhccc------cccccccccc-ccccccccccccceee-ehhhhhhhhhcccccccccc
Confidence 67 99999995 99999999999998 9987666554 4456788888864310 011111 12245788887
Q ss_pred ccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 185 avP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
++.+ .+++.++.++++-.++..
T Consensus 98 ~~G~-----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 98 VRGK-----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp CSCT-----THHHHHTTEEEEEEEEEC
T ss_pred ccch-----hHHHHHHHHhcCCcEEEE
Confidence 6652 245556677776665544
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.00 E-value=0.035 Score=52.24 Aligned_cols=85 Identities=12% Similarity=0.039 Sum_probs=52.4
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC------------------Cc-ccH---HHHHHC--C-
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK------------------GS-RSF---AEARAA--G- 161 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~------------------~~-~s~---~~A~~~--G- 161 (317)
|++ .||.|||+|-+|..++++|... |+ ++.+.+.. +. ++. +...+. .
T Consensus 35 l~~-~kVlvvG~GglG~ei~k~L~~~------Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v 107 (426)
T d1yovb1 35 LDT-CKVLVIGAGGLGCELLKNLALS------GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNC 107 (426)
T ss_dssp HHH-CCEEEECSSTTHHHHHHHHHTT------TCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTC
T ss_pred Hhc-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCC
Confidence 667 8999999999999999999988 66 34444321 00 111 111111 1
Q ss_pred -ceecCCCc-CCHHhhcCcCCEEEEccCCchHHHHHHHHH
Q 021114 162 -FTEENGTL-GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (317)
Q Consensus 162 -~~~~~~~~-~~~~e~v~~ADvVILavP~~~~~~vl~ei~ 199 (317)
+...+... ...++.+++.|+|+.++-.......+++..
T Consensus 108 ~i~~~~~~i~~~~~~~~~~~DlVi~~~Dn~~aR~~in~~c 147 (426)
T d1yovb1 108 NVVPHFNKIQDFNDTFYRQFHIIVCGLDSIIARRWINGML 147 (426)
T ss_dssp CCEEECSCGGGBCHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred ceEeeeccccchHHHHHHhcchheeccCcHHHHHHHHHHH
Confidence 11101111 223567899999999988777777777544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=93.94 E-value=0.041 Score=47.77 Aligned_cols=38 Identities=13% Similarity=0.137 Sum_probs=32.8
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++.+|+.+
T Consensus 2 dL~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 40 (254)
T d1hdca_ 2 DLSG-KTVIITGGARGLGAEAARQAVAA------GARVVLADVLDE 40 (254)
T ss_dssp CCCC-SEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 6899 999999966 5999999999999 999887776643
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.88 E-value=0.013 Score=45.95 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=51.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhc-CcCCEEEEccCCch
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v-~~ADvVILavP~~~ 190 (317)
.++.|+|+|++|.++++.++.. .+++++.+.|.+.+... ..=.|+..- ...++++.+ +..++.++++|...
T Consensus 4 ~~v~I~GaG~~G~~l~~~l~~~-----~~~~iv~fiDdd~~k~G-~~I~Gi~V~--~~~~l~~~~~~~i~iai~~i~~~~ 75 (126)
T d2dt5a2 4 WGLCIVGMGRLGSALADYPGFG-----ESFELRGFFDVDPEKVG-RPVRGGVIE--HVDLLPQRVPGRIEIALLTVPREA 75 (126)
T ss_dssp EEEEEECCSHHHHHHHHCSCCC-----SSEEEEEEEESCTTTTT-CEETTEEEE--EGGGHHHHSTTTCCEEEECSCHHH
T ss_pred ceEEEEcCCHHHHHHHHhHhhc-----CCcEEEEEEeCchHhcC-CEECCEEEe--cHHHHHHHHhhcccEEEEeCCHHH
Confidence 4799999999999999877543 17787777666543211 111244321 123444444 45788899999887
Q ss_pred HHHHHHHHHh
Q 021114 191 QADNYEKIFS 200 (317)
Q Consensus 191 ~~~vl~ei~~ 200 (317)
..++++.+.+
T Consensus 76 ~~~I~d~l~~ 85 (126)
T d2dt5a2 76 AQKAADLLVA 85 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7778776554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=93.71 E-value=0.13 Score=44.30 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=32.3
Q ss_pred ccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+|+| |++-|.| .+-||.++|+.|.+. |++|++..|+.
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~i~~r~~ 40 (258)
T d1ae1a_ 3 SLKG-TTALVTGGSKGIGYAIVEELAGL------GARVYTCSRNE 40 (258)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 5789 9999999 567999999999999 99988877653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.67 E-value=0.034 Score=45.51 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+||.|||.|..|.+.|..|.+. |++|.+.++.
T Consensus 7 ~kVvVIGaGiaGl~~A~~L~~~------G~~V~vier~ 38 (268)
T d1c0pa1 7 KRVVVLGSGVIGLSSALILARK------GYSVHILARD 38 (268)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CcEEEECccHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7899999999999999999999 9999888764
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=93.59 E-value=0.086 Score=45.78 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=31.4
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
..|+| ++|.|=|+|++|...|+.|.+. |.+|+...+
T Consensus 27 ~~l~g-~~v~IqGfGnVG~~~a~~L~~~------Gakvv~vsD 62 (242)
T d1v9la1 27 GGIEG-KTVAIQGMGNVGRWTAYWLEKM------GAKVIAVSD 62 (242)
T ss_dssp SCCTT-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEEC
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEeec
Confidence 47899 9999999999999999999999 998754443
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.49 E-value=0.028 Score=45.01 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=29.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG 150 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~~ 150 (317)
+||+|||.|..|...|..|++. |+ +|.+..+.+
T Consensus 5 ~kVaIIGaGpaGl~aA~~l~~~------G~~~V~v~E~~~ 38 (196)
T d1gtea4 5 AKIALLGAGPASISCASFLARL------GYSDITIFEKQE 38 (196)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEEESSS
T ss_pred CEEEEECChHHHHHHHHHHHHC------CCCeEEEEEecC
Confidence 8999999999999999999999 98 487777653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=93.42 E-value=0.12 Score=45.45 Aligned_cols=73 Identities=22% Similarity=0.257 Sum_probs=49.5
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHH-HH-CCceecCCCcCC----HHhhcCcCCEEEE
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-RA-AGFTEENGTLGD----IYETISGSDLVLL 184 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A-~~-~G~~~~~~~~~~----~~e~v~~ADvVIL 184 (317)
|+|.|+| .|.+|.++++.|.+. |++|++..|+..+..... .. .|+..-.+...+ ++.++..+|.+++
T Consensus 4 ktIlVtGatG~iG~~lv~~Ll~~------G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~ 77 (350)
T d1xgka_ 4 KTIAVVGATGRQGASLIRVAAAV------GHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFI 77 (350)
T ss_dssp CCEEEESTTSHHHHHHHHHHHHT------TCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEE
T ss_pred CEEEEECCChHHHHHHHHHHHhC------CCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEe
Confidence 8999999 699999999999999 999887777543322222 22 243221112223 3457889999998
Q ss_pred ccCCch
Q 021114 185 LISDAA 190 (317)
Q Consensus 185 avP~~~ 190 (317)
..+...
T Consensus 78 ~~~~~~ 83 (350)
T d1xgka_ 78 NTTSQA 83 (350)
T ss_dssp CCCSTT
T ss_pred eccccc
Confidence 887654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.32 E-value=0.09 Score=42.15 Aligned_cols=92 Identities=13% Similarity=0.077 Sum_probs=62.9
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-CCCcCCHHhhc------CcCC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETI------SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~~~~~~~~e~v------~~AD 180 (317)
+| .+|.|.| .|.+|...++.++.. |.++++..++ ++..+.+++.|...- +....+..+.+ +..|
T Consensus 25 ~g-~~VlI~ga~g~vG~~~iqla~~~------g~~vi~~~~~-~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d 96 (183)
T d1pqwa_ 25 PG-ERVLIHSATGGVGMAAVSIAKMI------GARIYTTAGS-DAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVD 96 (183)
T ss_dssp TT-CEEEETTTTSHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEE
T ss_pred CC-CEEEEECCCCCcccccchhhccc------cccceeeecc-cccccccccccccccccCCccCHHHHHHHHhCCCCEE
Confidence 47 8999988 599999999999999 9988777665 345677888775321 11122443433 3579
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+-++... .+++....++++..++..+
T Consensus 97 ~v~d~~g~~----~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 97 VVLNSLAGE----AIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEEECCCTH----HHHHHHHTEEEEEEEEECS
T ss_pred EEEecccch----HHHHHHHHhcCCCEEEEEc
Confidence 999888743 4455566777777766553
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.28 E-value=0.054 Score=43.51 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=45.7
Q ss_pred cCCCCEEEEEeccc---hHHHHHHHHHhhhhhhcCCceEEEEecCC--cccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG--SRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 108 l~GikkIGIIG~G~---mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~--~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
|+| .||+|||=++ +..|++..+... |+++++...+. ..........|... ....+++|+++++|+|
T Consensus 1 l~g-l~i~~vGD~~~sRv~~Sl~~~l~~~------g~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~d~~eai~~aDvv 71 (153)
T d1pg5a2 1 IDG-LVFALLGDLKYARTVNSLLRILTRF------RPKLVYLISPQLLRARKEILDELNYPV--KEVENPFEVINEVDVL 71 (153)
T ss_dssp STT-CEEEEEECCSSCHHHHHHHHHGGGS------CCSEEEEECCGGGCCCHHHHTTCCSCE--EEESCGGGTGGGCSEE
T ss_pred CCC-CEEEEECCCCccHHHHHHHHHHHHc------CCeeEEEecccccccchhhcccCCCeE--EEEeCHHHHhhcCCeE
Confidence 578 9999999654 899999999988 98754443321 11122233333221 1146899999999998
Q ss_pred EEc
Q 021114 183 LLL 185 (317)
Q Consensus 183 ILa 185 (317)
...
T Consensus 72 y~~ 74 (153)
T d1pg5a2 72 YVT 74 (153)
T ss_dssp EEE
T ss_pred EEe
Confidence 754
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.23 E-value=0.27 Score=38.86 Aligned_cols=78 Identities=18% Similarity=0.278 Sum_probs=52.9
Q ss_pred EEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHh-hcCcCCEEEEccCCch
Q 021114 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLISDAA 190 (317)
Q Consensus 113 kIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e-~v~~ADvVILavP~~~ 190 (317)
||+|+| .|.||+.+++.+.+. .++++..+.+.+.. ..+ .-.++|+||=-+.|..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~-----~~~~l~~~~d~~~~-------------------~~~~~~~~~DvvIDFS~p~~ 56 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAA-----DDLTLSAELDAGDP-------------------LSLLTDGNTEVVIDFTHPDV 56 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHS-----TTSEEEEEECTTCC-------------------THHHHTTTCSEEEECCCTTT
T ss_pred CEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCc-------------------hhhhccccCCEEEEcccHHH
Confidence 799999 699999999987664 16777666654321 111 1257899999999988
Q ss_pred HHHHHHHHHhcCCCCcEEEEecCchh
Q 021114 191 QADNYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 191 ~~~vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
..+.++....+=. .+|+=+.|+.-
T Consensus 57 ~~~~~~~~~~~~~--~~ViGTTG~~~ 80 (135)
T d1yl7a1 57 VMGNLEFLIDNGI--HAVVGTTGFTA 80 (135)
T ss_dssp HHHHHHHHHHTTC--EEEECCCCCCH
T ss_pred HHHHHHHHHhcCC--CEEEeccccch
Confidence 8888876554322 24555667753
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.23 E-value=0.081 Score=42.35 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=42.2
Q ss_pred CCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEE-EEecCCcccHHHHHHCCceecCCCcC---CHHhhcCcCCEEEEc
Q 021114 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLL 185 (317)
Q Consensus 111 ikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vi-vg~r~~~~s~~~A~~~G~~~~~~~~~---~~~e~v~~ADvVILa 185 (317)
|++|.|.| .|.+|..+++.|.+. |+++. +...++.+... ....++..-..... +..++++++|.|+.+
T Consensus 3 ~~tVlVtGatG~iG~~l~~~Ll~~------g~~v~v~~~~R~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~ 75 (252)
T d2q46a1 3 LPTVLVTGASGRTGQIVYKKLKEG------SDKFVAKGLVRSAQGKE-KIGGEADVFIGDITDADSINPAFQGIDALVIL 75 (252)
T ss_dssp CCEEEEESTTSTTHHHHHHHHHHT------TTTCEEEEEESCHHHHH-HTTCCTTEEECCTTSHHHHHHHHTTCSEEEEC
T ss_pred CCEEEEECCccHHHHHHHHHHHHC------CCcEEEEEEcCCHHHHH-hccCCcEEEEeeeccccccccccccceeeEEE
Confidence 68999999 799999999999998 87532 33333332221 11122111011122 345678899999877
Q ss_pred c
Q 021114 186 I 186 (317)
Q Consensus 186 v 186 (317)
.
T Consensus 76 a 76 (252)
T d2q46a1 76 T 76 (252)
T ss_dssp C
T ss_pred E
Confidence 5
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=93.17 E-value=0.09 Score=42.24 Aligned_cols=71 Identities=11% Similarity=0.103 Sum_probs=48.3
Q ss_pred cCCCCEEEEEec--cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccH----HHHHHCCceecCCCcCCHHhhcC
Q 021114 108 FNGINQIGVIGW--GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETIS 177 (317)
Q Consensus 108 l~GikkIGIIG~--G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~----~~A~~~G~~~~~~~~~~~~e~v~ 177 (317)
|+| +||++||= .++-.|++..+... |+++.+..... .... +.+.+.+... ....+++++++
T Consensus 1 l~g-~ki~~vGD~~nnV~~Sli~~~~~~------g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i--~~~~d~~~ai~ 71 (161)
T d1vlva2 1 LKG-VKVVFMGDTRNNVATSLMIACAKM------GMNFVACGPEELKPRSDVFKRCQEIVKETDGSV--SFTSNLEEALA 71 (161)
T ss_dssp STT-CEEEEESCTTSHHHHHHHHHHHHT------TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEE--EEESCHHHHHT
T ss_pred CCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEecchhhhhhhhHHHHHHHHHhhcCCce--EEEecHHHhhh
Confidence 689 99999994 46999999999998 99876554321 1111 1233333211 12468999999
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
++|+|..-.-
T Consensus 72 ~aDviyt~~~ 81 (161)
T d1vlva2 72 GADVVYTDVW 81 (161)
T ss_dssp TCSEEEECCC
T ss_pred hhhheeccce
Confidence 9999997654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.93 E-value=0.18 Score=43.29 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=33.1
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+.|.| |.+-|-|.+. ||.++|+.|.+. |.+|++..++.
T Consensus 3 ~~l~G-kv~lITGas~GIG~~ia~~la~~------G~~V~l~~r~~ 41 (244)
T d1yb1a_ 3 KSVTG-EIVLITGAGHGIGRLTAYEFAKL------KSKLVLWDINK 41 (244)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 56899 9999999776 999999999999 99988877753
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.85 E-value=0.12 Score=44.25 Aligned_cols=37 Identities=8% Similarity=0.032 Sum_probs=31.4
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+.
T Consensus 2 ~L~g-K~~lITGas~GIG~aia~~l~~~------G~~V~~~~r~~ 39 (242)
T d1ulsa_ 2 RLKD-KAVLITGAAHGIGRATLELFAKE------GARLVACDIEE 39 (242)
T ss_dssp TTTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 3789 999999965 5999999999999 99988777653
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.15 Score=43.94 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=33.9
Q ss_pred ccccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 105 PDAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+.-|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|+.
T Consensus 9 ~~~L~G-K~alITGassGIG~aiA~~la~~------G~~Vil~~r~~ 48 (269)
T d1xu9a_ 9 PEMLQG-KKVIVTGASKGIGREMAYHLAKM------GAHVVVTARSK 48 (269)
T ss_dssp GGGGTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred ccccCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 466999 9999999776 999999999999 99988777763
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=92.82 E-value=0.09 Score=43.55 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=33.6
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
..-.+ |+|+|||.|.-|-+-|..|.+. |++|++.++.+
T Consensus 39 ~~~~~-k~V~IIGaGPAGL~AA~~la~~------G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQK-KNLAVVGAGPAGLAFAINAAAR------GHQVTLFDAHS 76 (179)
T ss_dssp SCSSC-CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CCCCC-cEEEEECccHHHHHHHHHHHhh------ccceEEEeccC
Confidence 45566 9999999999999999999999 99999888753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=92.78 E-value=0.19 Score=42.59 Aligned_cols=37 Identities=22% Similarity=0.290 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEeccc---hHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~---mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.+|+| |++-|.|.+. ||.++|+.|.+. |.+|++..+.
T Consensus 4 ~~L~g-K~alITGas~~~GIG~aiA~~la~~------Ga~V~i~~~~ 43 (256)
T d1ulua_ 4 VDLSG-KKALVMGVTNQRSLGFAIAAKLKEA------GAEVALSYQA 43 (256)
T ss_dssp ECCTT-CEEEEESCCCSSSHHHHHHHHHHHT------TCEEEEEESS
T ss_pred cCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 46899 9999999753 999999999999 9998777665
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=92.77 E-value=0.061 Score=45.66 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=33.5
Q ss_pred ccCCCCEEEEEec-cc--hHHHHHHHHHhhhhhhcCCceEEEEecCCccc
Q 021114 107 AFNGINQIGVIGW-GS--QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~--mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s 153 (317)
-|+| |++.|.|. |. ||.++|+.|.+. |.+|++..++..+.
T Consensus 3 ~l~g-K~~lItGaag~~GIG~aiA~~la~~------Ga~Vil~~~~~~~~ 45 (268)
T d2h7ma1 3 LLDG-KRILVSGIITDSSIAFHIARVAQEQ------GAQLVLTGFDRLRL 45 (268)
T ss_dssp TTTT-CEEEECCCSSTTCHHHHHHHHHHHT------TCEEEEEECSCHHH
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHHHHHHc------CCEEEEEeCChHHH
Confidence 3789 99999996 65 999999999999 99988877765543
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=92.76 E-value=0.14 Score=44.35 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=33.9
Q ss_pred cccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 106 ~~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
.+|+| |++-|.|. +-||.++|+.|.+. |.+|++..|+.++
T Consensus 3 ~dL~g-K~alITGas~GIG~aia~~la~~------G~~Vv~~~r~~~~ 43 (261)
T d1geea_ 3 KDLEG-KVVVITGSSTGLGKSMAIRFATE------KAKVVVNYRSKED 43 (261)
T ss_dssp GGGTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHH
T ss_pred CCCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEeCCcHH
Confidence 57999 99999984 56999999999999 9999888876543
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=92.74 E-value=0.089 Score=41.95 Aligned_cols=72 Identities=18% Similarity=0.186 Sum_probs=50.8
Q ss_pred cCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCC----cccHHHHHHCCceecCCCcCCHHhhcCcCC
Q 021114 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (317)
Q Consensus 108 l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~----~~s~~~A~~~G~~~~~~~~~~~~e~v~~AD 180 (317)
|+| .||+|||= ++...|++..+... |+++.+..... +.....+.+.+... ....|++++++++|
T Consensus 2 l~g-l~i~~vGD~~~srV~~Sli~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~av~~aD 72 (157)
T d1ml4a2 2 IDG-LKIGLLGDLKYGRTVHSLAEALTFY------DVELYLISPELLRMPRHIVEELREKGMKV--VETTTLEDVIGKLD 72 (157)
T ss_dssp SSS-EEEEEESCTTTCHHHHHHHHHGGGS------CEEEEEECCGGGCCCHHHHHHHHHTTCCE--EEESCTHHHHTTCS
T ss_pred cCC-CEEEEEcCCccChHHHHHHHHHHhc------CCcEEEEccchhhcchHHHHHHHhhcccc--eeecCHHHhhccCc
Confidence 678 99999997 67899999999988 99877665432 22233444444321 11568999999999
Q ss_pred EEEEccCC
Q 021114 181 LVLLLISD 188 (317)
Q Consensus 181 vVILavP~ 188 (317)
+|....--
T Consensus 73 vvy~~~~~ 80 (157)
T d1ml4a2 73 VLYVTRIQ 80 (157)
T ss_dssp EEEECCCC
T ss_pred EEEeeccc
Confidence 98876543
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=92.70 E-value=0.059 Score=39.29 Aligned_cols=32 Identities=25% Similarity=0.130 Sum_probs=28.1
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
||+|||||.|-.|.=++...+.. |+++++.+.
T Consensus 1 ~k~vgIlG~GQLgrMl~~Aa~~L------G~~v~vldp 32 (78)
T d3etja2 1 MKQVCVLGNGQLGRMLRQAGEPL------GIAVWPVGL 32 (78)
T ss_dssp CEEEEEEBCSHHHHHHHHHHGGG------TEEEEEECT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHc------CCEEEEEcC
Confidence 58999999999999999999998 998765543
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.65 E-value=0.14 Score=42.25 Aligned_cols=71 Identities=15% Similarity=0.128 Sum_probs=49.5
Q ss_pred ccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHH----HHCCceecCCCcCCHHhhc
Q 021114 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEA----RAAGFTEENGTLGDIYETI 176 (317)
Q Consensus 107 ~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A----~~~G~~~~~~~~~~~~e~v 176 (317)
-|+| .||++||=| ++..|++..+... |+++.+.... .+...+.+ .+.|... ....++++++
T Consensus 2 ~l~~-lkia~vGD~~nnV~~Sli~~~~~~------G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~~eai 72 (185)
T d1dxha2 2 PLHD-ISYAYLGDARNNMGNSLLLIGAKL------GMDVRIAAPKALWPHDEFVAQCKKFAEESGAKL--TLTEDPKEAV 72 (185)
T ss_dssp CGGG-CEEEEESCCSSHHHHHHHHHHHHT------TCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEE--EEESCHHHHT
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHHHc------CCEEEEEccHHHHhhhHHHHHHHHHhhccCCeE--EEEeChhhcc
Confidence 4788 999999944 8999999999998 9988766532 22222222 2334321 1246899999
Q ss_pred CcCCEEEEcc
Q 021114 177 SGSDLVLLLI 186 (317)
Q Consensus 177 ~~ADvVILav 186 (317)
+++|+|..-+
T Consensus 73 ~~aDvVyt~~ 82 (185)
T d1dxha2 73 KGVDFVHTDV 82 (185)
T ss_dssp TTCSEEEECC
T ss_pred ccccEEEeeh
Confidence 9999988755
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.56 E-value=0.16 Score=43.72 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=35.9
Q ss_pred ccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc
Q 021114 105 PDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS 153 (317)
Q Consensus 105 ~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s 153 (317)
...|+| |++-|-| .+-||.++|+.|.+. |++|++..++.++.
T Consensus 13 ~~sL~g-K~~lITGas~GIG~aia~~la~~------Ga~Vvi~~~~~~~~ 55 (272)
T d1g0oa_ 13 SASLEG-KVALVTGAGRGIGREMAMELGRR------GCKVIVNYANSTES 55 (272)
T ss_dssp GGCCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHH
T ss_pred CcCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCchHH
Confidence 577999 9999999 678999999999999 99998877765543
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=92.55 E-value=0.054 Score=45.27 Aligned_cols=32 Identities=22% Similarity=0.209 Sum_probs=29.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|+|.|||.|.-|.+.|..|.+. |++|++.+..
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~------G~~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA------GHQVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 8999999999999999999999 9999888754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.089 Score=44.46 Aligned_cols=48 Identities=19% Similarity=0.075 Sum_probs=37.8
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~ 160 (317)
+.|+| |.+-|.|.+ -||.++|+.|.+. |++|++..|+.++..+.+.+.
T Consensus 1 ~slkG-KvalITGas~GIG~aia~~la~~------G~~V~~~~r~~~~~~~~~~~l 49 (248)
T d2o23a1 1 RSVKG-LVAVITGGASGLGLATAERLVGQ------GASAVLLDLPNSGGEAQAKKL 49 (248)
T ss_dssp CCCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHh
Confidence 46899 999999965 4999999999999 999888877765544444443
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.51 E-value=0.14 Score=45.18 Aligned_cols=95 Identities=15% Similarity=0.136 Sum_probs=56.9
Q ss_pred cccccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEE
Q 021114 104 LPDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (317)
Q Consensus 104 ~~~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvV 182 (317)
++.-|+| |++.|.|.+ -||.++|+.|.+. |++|++..|+.++..+.+.+ +.. .. ......+++
T Consensus 6 ~~g~L~g-KvalITGas~GIG~aia~~la~~------Ga~Vvi~~r~~~~l~~~~~e--l~~------~~-~~~~~~~~~ 69 (297)
T d1yxma1 6 APGLLQG-QVAIVTGGATGIGKAIVKELLEL------GSNVVIASRKLERLKSAADE--LQA------NL-PPTKQARVI 69 (297)
T ss_dssp CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHH--HHH------TS-CTTCCCCEE
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHH--HHh------hh-ccccCceEE
Confidence 4577999 999999965 5999999999999 99988877654332222221 100 00 001234555
Q ss_pred EEccC--C-chHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 183 LLLIS--D-AAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 183 ILavP--~-~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.+.+= + +.+.++++++...+.+=.+|+..+|.
T Consensus 70 ~~~~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 70 PIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGG 104 (297)
T ss_dssp EEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred EEeccCCCHHHHHHHHHHHHHHhCCeEEEEeeccc
Confidence 55442 2 23345677666655444566665554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=92.51 E-value=0.22 Score=42.98 Aligned_cols=41 Identities=20% Similarity=0.220 Sum_probs=35.5
Q ss_pred cccccCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 104 LPDAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 104 ~~~~l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
|...|+| |++.|.| .|-||.++|+.|.+. |.+|++..|+..
T Consensus 19 ~~~~l~g-K~alITGas~GIG~aiA~~la~~------Ga~Vii~~r~~~ 60 (294)
T d1w6ua_ 19 PPNSFQG-KVAFITGGGTGLGKGMTTLLSSL------GAQCVIASRKMD 60 (294)
T ss_dssp CTTTTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHH
Confidence 5579999 9999999 678999999999999 999988777643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=92.47 E-value=0.044 Score=44.71 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=29.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|+|+|||.|.-|.+.|..|.+. |++|++..+.
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~------G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSR------GTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTT------TCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 6799999999999999999999 9999888764
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.47 E-value=0.1 Score=44.81 Aligned_cols=38 Identities=16% Similarity=0.140 Sum_probs=31.8
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
-|+| |++-|-|.+ -||.++|+.|.+. |++|++..|+.+
T Consensus 3 ~L~g-K~alITGas~GIG~aia~~la~~------G~~V~~~~r~~~ 41 (244)
T d1nffa_ 3 RLTG-KVALVSGGARGMGASHVRAMVAE------GAKVVFGDILDE 41 (244)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred ccCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 4789 999999964 5999999999999 999887776543
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.36 E-value=0.24 Score=42.34 Aligned_cols=40 Identities=23% Similarity=0.165 Sum_probs=34.0
Q ss_pred cccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
.+|+| |++-|.|.+. ||.++|+.|.+. |.+|++..++.++
T Consensus 5 m~l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~~~ 45 (260)
T d1h5qa_ 5 ISFVN-KTIIVTGGNRGIGLAFTRAVAAA------GANVAVIYRSAAD 45 (260)
T ss_dssp ECCTT-EEEEEETTTSHHHHHHHHHHHHT------TEEEEEEESSCTT
T ss_pred ccCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHHH
Confidence 36899 9999999665 999999999999 9998888776544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.28 E-value=0.093 Score=45.32 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=30.8
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++.
T Consensus 4 L~g-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 40 (268)
T d2bgka1 4 LQD-KVAIITGGAGGIGETTAKLFVRY------GAKVVIADIAD 40 (268)
T ss_dssp TTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 999999955 5999999999999 99988777653
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=92.24 E-value=0.066 Score=44.38 Aligned_cols=32 Identities=34% Similarity=0.413 Sum_probs=29.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+||.|||.|.-|.+.|..|++. |++|++.++.
T Consensus 5 ~kV~IiGaG~aGl~~A~~L~~~------G~~v~v~Er~ 36 (265)
T d2voua1 5 DRIAVVGGSISGLTAALMLRDA------GVDVDVYERS 36 (265)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHHHC------CCCEEEEeCC
Confidence 7999999999999999999999 9999888764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=92.17 E-value=0.35 Score=40.61 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=31.3
Q ss_pred cCCCCEEEEEeccc---hHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGWGS---QGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~G~---mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|.|.+. ||.++|+.|.+. |++|++..+++
T Consensus 3 L~g-K~~lITGass~~GIG~aiA~~l~~~------G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSG-KRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND 41 (258)
T ss_dssp TTT-CEEEECCCCSTTSHHHHHHHHHHHT------TCEEEEEESST
T ss_pred CCC-CEEEEECCCCchhHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 789 9999999765 889999999999 99998877763
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=92.05 E-value=0.1 Score=39.30 Aligned_cols=37 Identities=14% Similarity=0.073 Sum_probs=31.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
...++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 18 ~~~~~-~~vvVvGgG~ig~E~A~~l~~~------g~~vt~i~~~ 54 (121)
T d1mo9a2 18 DYEPG-STVVVVGGSKTAVEYGCFFNAT------GRRTVMLVRT 54 (121)
T ss_dssp CSCCC-SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred hhCCC-CEEEEECCCHHHHHHHHHHHhc------chhheEeecc
Confidence 34568 9999999999999999999998 9888777664
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.90 E-value=0.29 Score=39.30 Aligned_cols=69 Identities=16% Similarity=0.148 Sum_probs=46.9
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccHHHHHH-----CCceecCCCcCCHHhhcC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARA-----AGFTEENGTLGDIYETIS 177 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~~~A~~-----~G~~~~~~~~~~~~e~v~ 177 (317)
|+| +||++||=| ++..|++..+... |+++.+.... .....+.+.+ .+... ...+++|+++
T Consensus 2 l~g-l~Ia~VGD~~nv~~Sli~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~---~~~d~~ea~~ 71 (163)
T d1pvva2 2 IKG-VKVVYVGDGNNVAHSLMIAGTKL------GADVVVATPEGYEPDEKVIKWAEQNAAESGGSFE---LLHDPVKAVK 71 (163)
T ss_dssp CTT-CEEEEESCCCHHHHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEE---EESCHHHHTT
T ss_pred cCC-CEEEEECCCcHHHHHHHHHHHHc------CCeEEEecccccCCChHHHHHHHHhhhcccceEE---EecCHHHHhh
Confidence 789 999999965 5778999988888 9987665432 2222222222 22221 2568999999
Q ss_pred cCCEEEEcc
Q 021114 178 GSDLVLLLI 186 (317)
Q Consensus 178 ~ADvVILav 186 (317)
++|+|..-.
T Consensus 72 ~adviy~~~ 80 (163)
T d1pvva2 72 DADVIYTDV 80 (163)
T ss_dssp TCSEEEECC
T ss_pred hccEEeecc
Confidence 999988643
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=91.75 E-value=0.4 Score=41.09 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=31.0
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..++.
T Consensus 2 l~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 2 FTD-RVVLITGGGSGLGRATAVRLAAE------GAKLSLVDVSS 38 (258)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 689 999999965 5999999999999 99988777653
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=91.73 E-value=0.096 Score=40.45 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=27.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc--eEEEEec
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLR 148 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r 148 (317)
.| |||.|||.|..|-.+|..|++. +. +|++..+
T Consensus 1 ~g-krivIvGgG~~G~e~A~~l~~~------~~~~~Vtlie~ 35 (186)
T d1fcda1 1 AG-RKVVVVGGGTGGATAAKYIKLA------DPSIEVTLIEP 35 (186)
T ss_dssp CC-CEEEEECCSHHHHHHHHHHHHH------CTTSEEEEECS
T ss_pred CC-CcEEEECccHHHHHHHHHHHHc------CCCCcEEEEEC
Confidence 47 9999999999999999999998 64 6665543
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.70 E-value=0.23 Score=42.80 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=29.3
Q ss_pred cccCCCCEEEEEeccchHHHHHHHH-HhhhhhhcCCceEEEEe
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGL 147 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~L-r~~~~~~~~G~~Vivg~ 147 (317)
.+++| ++|.|=|+|++|...|+.| ++. |.+++...
T Consensus 27 ~~l~g-~~vaIqG~GnVG~~~a~~L~~e~------Ga~vv~vs 62 (234)
T d1b26a1 27 IDPKK-ATVAVQGFGNVGQFAALLISQEL------GSKVVAVS 62 (234)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHHH------CCEEEEEE
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHhc------CCceEEee
Confidence 46899 9999999999999999999 467 88765443
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.66 E-value=0.077 Score=46.60 Aligned_cols=38 Identities=32% Similarity=0.362 Sum_probs=30.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+.||+|+|||.|.-|.+.|..|++. +.+++|++..+.+
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~----~~~~~v~vfEk~~ 39 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAE----KAFDQVTLFERRG 39 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTT----TCCSEEEEECSSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHh----CCCCCEEEEECCC
Confidence 3469999999999999999999876 1135888887763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.59 E-value=0.41 Score=40.90 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=32.9
Q ss_pred ccccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+..|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+
T Consensus 5 M~~lk~-Kv~lITGas~GIG~aiA~~la~~------G~~Vv~~~r~ 43 (257)
T d1xg5a_ 5 MERWRD-RLALVTGASGGIGAAVARALVQQ------GLKVVGCART 43 (257)
T ss_dssp CGGGTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 567999 999999955 6999999999999 9998777665
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.39 E-value=0.12 Score=38.94 Aligned_cols=33 Identities=21% Similarity=0.175 Sum_probs=29.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+++.|||.|.+|--+|..|.+. |.+|.+..+.+
T Consensus 23 ~~v~IiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 55 (117)
T d1ebda2 23 KSLVVIGGGYIGIELGTAYANF------GTKVTILEGAG 55 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCCccceeeeeeeccc------ccEEEEEEecc
Confidence 7999999999999999999999 99988877653
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=91.31 E-value=0.32 Score=40.69 Aligned_cols=72 Identities=13% Similarity=0.135 Sum_probs=47.4
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc-cH------HHHHHCCceecCCCcC---CHHhhcCcCC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF------AEARAAGFTEENGTLG---DIYETISGSD 180 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~-s~------~~A~~~G~~~~~~~~~---~~~e~v~~AD 180 (317)
+||.|+| .|.+|..+++.|.+. |++|++..|.... .. ......++....+... +..+.++++|
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~------G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~ 77 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISL------GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVD 77 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCS
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcc
Confidence 6899999 699999999999999 9998777765321 11 1122334332111122 3446788999
Q ss_pred EEEEccCCc
Q 021114 181 LVLLLISDA 189 (317)
Q Consensus 181 vVILavP~~ 189 (317)
.++.+.+..
T Consensus 78 ~~~~~~~~~ 86 (312)
T d1qyda_ 78 VVISALAGG 86 (312)
T ss_dssp EEEECCCCS
T ss_pred hhhhhhhhc
Confidence 999887654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=91.31 E-value=0.43 Score=40.82 Aligned_cols=36 Identities=19% Similarity=0.133 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 5 ~L~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~ 41 (259)
T d2ae2a_ 5 NLEG-CTALVTGGSRGIGYGIVEELASL------GASVYTCSRN 41 (259)
T ss_dssp CCTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 5789 999999976 4999999999999 9998877764
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=91.30 E-value=0.24 Score=40.65 Aligned_cols=95 Identities=18% Similarity=0.219 Sum_probs=53.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEE-ecCC-cccHHHHHHCCceecC-CCcCCHHhhcCcCCEEEEccC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKG-SRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLLLIS 187 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg-~r~~-~~s~~~A~~~G~~~~~-~~~~~~~e~v~~ADvVILavP 187 (317)
.|||||| .|..|+-+.+.|.+. ..+++... .++. .+........-....+ ......++...++|+|++++|
T Consensus 6 ikVaIlGATGyvG~elirLL~~H-----P~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp 80 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANH-----PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLP 80 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTC-----SSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCS
T ss_pred cEEEEECcccHHHHHHHHHHHhC-----CCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccc
Confidence 5799999 899999999998875 13344322 2221 2222222111000000 011234456789999999999
Q ss_pred CchHHHHHHHHHhcCCCCcEEEEecCc
Q 021114 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (317)
Q Consensus 188 ~~~~~~vl~ei~~~lk~gaiVi~~~Gv 214 (317)
.....++...+ .+.+.++.+.+++
T Consensus 81 ~~~s~~~~~~l---~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 81 HGTTQEIIKGL---PQELKIVDLSADF 104 (183)
T ss_dssp SSHHHHHHHTS---CSSCEEEECSSTT
T ss_pred cchHHHHHHHH---HhcCcccccchhh
Confidence 98776655432 2345555566665
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=91.30 E-value=0.31 Score=41.69 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=32.5
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
+|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++.+
T Consensus 2 ~l~g-K~~lITGas~GIG~aia~~la~~------Ga~V~i~~r~~~ 40 (251)
T d1vl8a_ 2 DLRG-RVALVTGGSRGLGFGIAQGLAEA------GCSVVVASRNLE 40 (251)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 5889 999999965 5999999999999 999888776543
|
| >d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: Dhaf3308-like family: Dhaf3308-like domain: Hypothetical protein Dhaf 3308 species: Desulfitobacterium hafniense [TaxId: 49338]
Probab=91.25 E-value=0.19 Score=43.72 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=55.0
Q ss_pred cccccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCE
Q 021114 102 KLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDL 181 (317)
Q Consensus 102 ~~~~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADv 181 (317)
.+.....+| ++|++||. + .....+++. +.++.+.++... .|... ....++++++||+
T Consensus 114 ~~~~~~~~g-~kV~vIG~--~--P~v~~l~~~------~~~~~VlE~~p~--------~gd~p----~~~~~~lLp~aD~ 170 (251)
T d2h1qa1 114 IMSQNEVKG-KKVGVVGH--F--PHLESLLEP------ICDLSILEWSPE--------EGDYP----LPASEFILPECDY 170 (251)
T ss_dssp HHTTTTTTT-SEEEEESC--C--TTHHHHHTT------TSEEEEEESSCC--------TTCEE----GGGHHHHGGGCSE
T ss_pred hhhccccCC-CEEEEEec--c--hhHHHHHhc------CCcEEEEeCCCC--------CCCCC----chHHHHhhhcCCE
Confidence 334456678 99999986 4 455667777 888888777532 33332 2467889999999
Q ss_pred EEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 182 VILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
||+.-. +-...-++.++.+.++...++++
T Consensus 171 viiTGs-TlvN~Tl~~LL~~~~~a~~vvl~ 199 (251)
T d2h1qa1 171 VYITCA-SVVDKTLPRLLELSRNARRITLV 199 (251)
T ss_dssp EEEETH-HHHHTCHHHHHHHTTTSSEEEEE
T ss_pred EEEEec-hhhcCCHHHHHHhCCcCCEEEEE
Confidence 998632 11123455677766665555433
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.22 E-value=0.088 Score=42.40 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=45.2
Q ss_pred cCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcCcCCEEEE
Q 021114 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (317)
Q Consensus 108 l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~~ADvVIL 184 (317)
|+| .+|+|||= +++..|++..+... |+++.+...+. ... .+..+.. ..+++|+++++|+|..
T Consensus 1 F~g-l~i~~vGD~~~srv~~Sl~~~~~~~------g~~~~i~~P~~---~~~-~~~~~~~----~~~~~ea~~~aDviy~ 65 (151)
T d2at2a2 1 FKG-LTVSIHGDIKHSRVARSNAEVLTRL------GARVLFSGPSE---WQD-EENTFGT----YVSMDEAVESSDVVML 65 (151)
T ss_pred CCC-CEEEEEcCCCCCHHHHHHHHHHHHc------CCcccccCCch---hhc-cccceeE----EEechhccccCceeee
Confidence 578 99999995 57999999999998 99876554321 111 1122221 4588999999999876
Q ss_pred cc
Q 021114 185 LI 186 (317)
Q Consensus 185 av 186 (317)
..
T Consensus 66 ~r 67 (151)
T d2at2a2 66 LR 67 (151)
T ss_pred eE
Confidence 43
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.12 Score=43.96 Aligned_cols=27 Identities=26% Similarity=0.491 Sum_probs=25.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
.-|+. .+|.|||+|-+|..++++|...
T Consensus 26 ~kL~~-~~VliiG~GglGs~va~~La~~ 52 (247)
T d1jw9b_ 26 EALKD-SRVLIVGLGGLGCAASQYLASA 52 (247)
T ss_dssp HHHHH-CEEEEECCSHHHHHHHHHHHHH
T ss_pred HHHhC-CCEEEECCCHHHHHHHHHHHHc
Confidence 45788 9999999999999999999998
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.07 E-value=0.24 Score=39.80 Aligned_cols=73 Identities=15% Similarity=0.091 Sum_probs=45.6
Q ss_pred cCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc----ccHH----HHHHCCceecCCCcCCHHhhcCc
Q 021114 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFA----EARAAGFTEENGTLGDIYETISG 178 (317)
Q Consensus 108 l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~----~s~~----~A~~~G~~~~~~~~~~~~e~v~~ 178 (317)
|+| +||+|||-|+ +-.|++..+... |+++.+.....- ...+ .+.+.|... ....+++++++.
T Consensus 2 l~g-l~I~~vGD~~nV~~Sli~~~~~~------g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i--~~~~d~~~~~~~ 72 (170)
T d1otha2 2 LKG-LTLSWIGDGNNILHSIMMSAAKF------GMHLQAATPKGYEPDASVTKLAEQYAKENGTKL--LLTNDPLEAAHG 72 (170)
T ss_dssp CTT-CEEEEESCSSHHHHHHHTTTGGG------TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCE--EEESCHHHHHTT
T ss_pred CCC-CEEEEEcCchhHHHHHHHHHHHc------CCEEEEEeccccCCchHHHHHHHHHHhccCCEE--EEEcCHHHHHhh
Confidence 789 9999999764 445555555555 888766554321 1112 222333211 015699999999
Q ss_pred CCEEEEccCCc
Q 021114 179 SDLVLLLISDA 189 (317)
Q Consensus 179 ADvVILavP~~ 189 (317)
+|+|...+-..
T Consensus 73 advi~~~~~~~ 83 (170)
T d1otha2 73 GNVLITDTWIS 83 (170)
T ss_dssp CSEEEECCSSC
T ss_pred hhheeeeceec
Confidence 99999876543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=91.01 E-value=0.12 Score=39.06 Aligned_cols=33 Identities=12% Similarity=0.073 Sum_probs=29.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
++|.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~------G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGL------GAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhcc------ccEEEEEeecc
Confidence 7899999999999999999999 99988877653
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=91.01 E-value=0.15 Score=39.19 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=29.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 31 ~~vvIIGgG~iG~E~A~~l~~~------g~~Vtli~~~ 62 (121)
T d1d7ya2 31 SRLLIVGGGVIGLELAATARTA------GVHVSLVETQ 62 (121)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CeEEEECcchhHHHHHHHhhcc------cceEEEEeec
Confidence 8999999999999999999999 9998877654
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.98 E-value=0.13 Score=44.14 Aligned_cols=37 Identities=16% Similarity=0.101 Sum_probs=31.6
Q ss_pred cCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 108 l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
|+| |++-|.|. +-||.++|+.|.+. |.+|++..++.+
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 40 (256)
T d1k2wa_ 3 LDG-KTALITGSARGIGRAFAEAYVRE------GARVAIADINLE 40 (256)
T ss_dssp TTT-EEEEEETCSSHHHHHHHHHHHHT------TEEEEEEESCHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 789 99999996 56999999999999 999887776533
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=90.89 E-value=0.11 Score=45.85 Aligned_cols=33 Identities=18% Similarity=0.288 Sum_probs=30.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|||.|||.|.-|.+.|..|.+. |++|.+...++
T Consensus 3 KKI~IIGaG~sGL~aA~~L~k~------G~~V~viEk~~ 35 (314)
T d2bi7a1 3 KKILIVGAGFSGAVIGRQLAEK------GHQVHIIDQRD 35 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHTT------TCEEEEEESSS
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCCEEEEECCC
Confidence 8999999999999999999998 99998887664
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=90.78 E-value=0.12 Score=44.35 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=29.9
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++
T Consensus 4 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~~~ 39 (253)
T d1hxha_ 4 LQG-KVALVTGGASGVGLEVVKLLLGE------GAKVAFSDIN 39 (253)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEECSC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 789 999999954 5999999999999 9998777654
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=90.77 E-value=0.27 Score=41.88 Aligned_cols=38 Identities=11% Similarity=0.047 Sum_probs=32.3
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++.++...
T Consensus 2 rL~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKD-KLAVITGGANGIGRAIAERFAVE------GADIAIADLVPA 40 (247)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCch
Confidence 3789 999999965 5999999999999 999888877654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=90.62 E-value=0.17 Score=38.76 Aligned_cols=34 Identities=26% Similarity=0.161 Sum_probs=30.3
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
++ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 29 ~~-k~vvViGgG~iG~E~A~~l~~~------g~~Vtlie~~ 62 (123)
T d1nhpa2 29 EV-NNVVVIGSGYIGIEAAEAFAKA------GKKVTVIDIL 62 (123)
T ss_dssp TC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEESS
T ss_pred CC-CEEEEECChHHHHHHHHHhhcc------ceEEEEEEec
Confidence 46 8999999999999999999999 9998877654
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=90.48 E-value=0.17 Score=43.21 Aligned_cols=37 Identities=24% Similarity=0.171 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+|+| |++-|-|.+ -||.++|+.|.+. |++|++..|+.
T Consensus 1 dl~g-K~alITGas~GIG~a~a~~l~~~------G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEG-KIALVTGASRGIGRAIAETLAAR------GAKVIGTATSE 38 (243)
T ss_dssp CCTT-CEEEESSCSSHHHHHHHHHHHHT------TCEEEEEESSH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 5889 988888954 6999999999999 99987776653
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=90.44 E-value=0.16 Score=38.58 Aligned_cols=33 Identities=24% Similarity=0.185 Sum_probs=29.8
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
++|.|||.|.+|--+|..|++. |.+|.+..+.+
T Consensus 23 ~~i~IiG~G~ig~E~A~~l~~~------G~~Vtiv~~~~ 55 (119)
T d3lada2 23 GKLGVIGAGVIGLELGSVWARL------GAEVTVLEAMD 55 (119)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred CeEEEECCChHHHHHHHHHHHc------CCceEEEEeec
Confidence 7899999999999999999999 99988877653
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.37 E-value=0.37 Score=41.13 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=31.4
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|-| .+-||.++|+.|.+. |++|++..++.
T Consensus 3 l~G-K~alITGas~GIG~aia~~la~~------G~~V~~~~~~~ 39 (248)
T d2d1ya1 3 FAG-KGVLVTGGARGIGRAIAQAFARE------GALVALCDLRP 39 (248)
T ss_dssp TTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESST
T ss_pred cCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 9999999 567999999999999 99988777664
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=90.25 E-value=0.15 Score=38.84 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=29.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
++|.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 23 ~~v~IiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 54 (117)
T d1onfa2 23 KKIGIVGSGYIAVELINVIKRL------GIDSYIFARG 54 (117)
T ss_dssp SEEEEECCSHHHHHHHHHHHTT------TCEEEEECSS
T ss_pred CEEEEECCchHHHHHHHHHHhc------cccceeeehh
Confidence 8999999999999999999998 9998887764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.24 E-value=0.18 Score=43.01 Aligned_cols=72 Identities=26% Similarity=0.255 Sum_probs=46.3
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC-CceecCCCcCCHHh---h---cCc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYE---T---ISG 178 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~-G~~~~~~~~~~~~e---~---v~~ 178 (317)
+|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+.++..+.+.+. ++..-.-.+.+.++ + +..
T Consensus 2 dl~G-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~ 74 (242)
T d1cyda_ 2 NFSG-LRALVTGAGKGIGRDTVKALHAS------GAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGP 74 (242)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCC
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCC
Confidence 5899 999999965 5999999999999 999888777644333333333 22110011233332 2 246
Q ss_pred CCEEEEc
Q 021114 179 SDLVLLL 185 (317)
Q Consensus 179 ADvVILa 185 (317)
-|++|..
T Consensus 75 iDilVnn 81 (242)
T d1cyda_ 75 VDLLVNN 81 (242)
T ss_dssp CSEEEEC
T ss_pred CeEEEEC
Confidence 7999875
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=90.23 E-value=0.26 Score=42.00 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=34.3
Q ss_pred cccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccH
Q 021114 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154 (317)
Q Consensus 106 ~~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~ 154 (317)
+-|+| |++-|.|.+ -||.++|+.|.+. |++|++..+++++..
T Consensus 2 ~~L~G-K~alITGas~GIG~aia~~la~~------G~~Vvi~~~~~~~~~ 44 (259)
T d1ja9a_ 2 KPLAG-KVALTTGAGRGIGRGIAIELGRR------GASVVVNYGSSSKAA 44 (259)
T ss_dssp CTTTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSCHHHH
T ss_pred CCCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEcCCChHHH
Confidence 35899 999999955 4999999999999 999988777765433
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=90.22 E-value=0.35 Score=39.50 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEecc--chHHHHHHHHHhhhhhhcCCceEEEEecC----CcccH----HHHHHCCceecCCCcCCHHhh
Q 021114 106 DAFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSF----AEARAAGFTEENGTLGDIYET 175 (317)
Q Consensus 106 ~~l~GikkIGIIG~G--~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~----~~~s~----~~A~~~G~~~~~~~~~~~~e~ 175 (317)
+.|+| .+|++||=| ++..|++..+... |+++.+...+ ..... +.+...|... ....+++++
T Consensus 1 k~~~~-l~i~~vGD~~nnv~~Sli~~~~~~------g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~--~~~~d~~~a 71 (183)
T d1duvg2 1 KAFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEAALVTECRALAQQNGGNI--TLTEDVAKG 71 (183)
T ss_dssp CCGGG-CEEEEESCTTSHHHHHHHHHHHHH------CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEE--EEESCHHHH
T ss_pred CCcCC-CEEEEEcCCccHHHHHHHHHHHHc------CCEEEEEechHhhhhHHHHHHHHHHHHhcCCce--EEEechhhc
Confidence 35788 999999955 6999999999999 9987665432 11111 2334445332 125689999
Q ss_pred cCcCCEEEEccC
Q 021114 176 ISGSDLVLLLIS 187 (317)
Q Consensus 176 v~~ADvVILavP 187 (317)
++++|+|..-+=
T Consensus 72 ~~~aDvvyt~~w 83 (183)
T d1duvg2 72 VEGADFIYTDVW 83 (183)
T ss_dssp HTTCSEEEECCS
T ss_pred cccCCEEEEEeh
Confidence 999999987543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.08 E-value=0.17 Score=38.79 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=29.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..|.+. |.+|.+..+.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~l------G~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRL------GSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhh------CcceeEEEec
Confidence 7999999999999999999999 9998877664
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.98 E-value=0.15 Score=41.52 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.||.|||.|.=|-+-|..|.+. |++|++....
T Consensus 6 ~kViVIGaG~aGL~aA~~L~~~------G~~V~VlEa~ 37 (449)
T d2dw4a2 6 GKVIIIGSGVSGLAAARQLQSF------GMDVTLLEAR 37 (449)
T ss_dssp CEEEEECCBHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC------CCCEEEEeCC
Confidence 6899999999999999999999 9999888654
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=89.92 E-value=0.3 Score=42.62 Aligned_cols=35 Identities=17% Similarity=0.262 Sum_probs=30.9
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEe
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGL 147 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~ 147 (317)
..|+| +++.|=|+|++|...|+.|.+. |.+|+...
T Consensus 32 ~~l~g-~~v~IQGfGnVG~~~a~~L~e~------Gakvvavs 66 (255)
T d1bgva1 32 DTLVG-KTVALAGFGNVAWGAAKKLAEL------GAKAVTLS 66 (255)
T ss_dssp CCSTT-CEEEECCSSHHHHHHHHHHHHH------TCEEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEe
Confidence 56899 9999999999999999999999 99875443
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.90 E-value=0.39 Score=41.06 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=31.5
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
-|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 3 rl~G-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 40 (250)
T d1ydea1 3 RYAG-KVVVVTGGGRGIGAGIVRAFVNS------GARVVICDKDE 40 (250)
T ss_dssp TTTT-CEEEEETCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 3789 99999995 67999999999999 99988776653
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=89.81 E-value=0.62 Score=39.61 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=31.5
Q ss_pred cCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 108 FNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 108 l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
|+| |++-|-|.+. ||.++|+.|.+. |++|++..+++.+
T Consensus 2 L~g-K~alITGas~GIG~aiA~~la~~------Ga~V~~~~r~~~~ 40 (260)
T d1x1ta1 2 LKG-KVAVVTGSTSGIGLGIATALAAQ------GADIVLNGFGDAA 40 (260)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEECCSCHH
T ss_pred CCc-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEeCCcHH
Confidence 688 8888888654 999999999999 9999888776543
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.78 E-value=0.11 Score=44.09 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=29.1
Q ss_pred EEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 113 kIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
+|.|||.|.-|.++|..|++. |++|.+.++..
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~~~------G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLHKA------GIDNVILERQT 35 (292)
T ss_dssp SEEEECCSHHHHHHHHHHHHH------TCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHC------CCCEEEEeCCC
Confidence 699999999999999999999 99988887653
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=89.76 E-value=0.57 Score=39.98 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
-|+| |++-|.|.+ -||.++|+.|.+. |.+|++..++
T Consensus 2 rL~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~ 38 (260)
T d1zema1 2 KFNG-KVCLVTGAGGNIGLATALRLAEE------GTAIALLDMN 38 (260)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 4789 999999965 4999999999999 9998777665
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.75 E-value=0.4 Score=37.99 Aligned_cols=46 Identities=13% Similarity=-0.024 Sum_probs=34.5
Q ss_pred CCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCc
Q 021114 109 NGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (317)
Q Consensus 109 ~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~ 162 (317)
+| .+|.|+|.| .+|....+.++.. |.+|++..++ ++..+.+++.|.
T Consensus 28 ~g-~~Vlv~ga~g~vG~~~iqlak~~------Ga~Vi~~~~s-~~k~~~~~~lGa 74 (179)
T d1qora2 28 PD-EQFLFHAAAGGVGLIACQWAKAL------GAKLIGTVGT-AQKAQSALKAGA 74 (179)
T ss_dssp TT-CEEEESSTTBHHHHHHHHHHHHH------TCEEEEEESS-HHHHHHHHHHTC
T ss_pred CC-CEEEEEccccccchHHHHHHHHh------CCeEeecccc-hHHHHHHHhcCC
Confidence 47 899999654 5999999998888 9987665555 445667777774
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.64 E-value=0.19 Score=38.51 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=29.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~------G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSAL------GSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcC------CcEEEEEeec
Confidence 7899999999999999999999 9998887765
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.55 E-value=0.14 Score=40.04 Aligned_cols=32 Identities=22% Similarity=0.284 Sum_probs=28.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~ 149 (317)
.+|.|||.|.-|.+.|..|++. |+ +|++..+.
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~------G~~~V~vlE~~ 33 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEA------GITDLLILEAT 33 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECCcHHHHHHHHHHHhC------CCCcEEEEECC
Confidence 3699999999999999999999 97 68887664
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=89.44 E-value=0.19 Score=44.04 Aligned_cols=72 Identities=24% Similarity=0.232 Sum_probs=45.3
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHH--H---HHCC-c---eecC-CCcCCHHhhcC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE--A---RAAG-F---TEEN-GTLGDIYETIS 177 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~--A---~~~G-~---~~~~-~~~~~~~e~v~ 177 (317)
+| |+|.|.| .|.+|..+++.|.+. |++|+...|+.++.... . ...+ . ...| ....++++++.
T Consensus 10 ~g-k~VlVTG~sGfIGs~l~~~Ll~~------G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 82 (342)
T d1y1pa1 10 EG-SLVLVTGANGFVASHVVEQLLEH------GYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIK 82 (342)
T ss_dssp TT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTT
T ss_pred Cc-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcc
Confidence 37 9999999 899999999999999 99987666542221110 0 0011 0 1000 01234567889
Q ss_pred cCCEEEEccC
Q 021114 178 GSDLVLLLIS 187 (317)
Q Consensus 178 ~ADvVILavP 187 (317)
++|.|+.+.-
T Consensus 83 ~~~~v~~~a~ 92 (342)
T d1y1pa1 83 GAAGVAHIAS 92 (342)
T ss_dssp TCSEEEECCC
T ss_pred cchhhhhhcc
Confidence 9999886543
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=89.41 E-value=0.68 Score=39.43 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=32.8
Q ss_pred ccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 107 ~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
+|+| |++-|.|... ||.++|+.|.+. |.+|++..|+.++
T Consensus 2 ~l~g-K~vlITGgs~GIG~~~A~~la~~------G~~vii~~r~~~~ 41 (254)
T d1sbya1 2 DLTN-KNVIFVAALGGIGLDTSRELVKR------NLKNFVILDRVEN 41 (254)
T ss_dssp CCTT-CEEEEETTTSHHHHHHHHHHHHT------CCSEEEEEESSCC
T ss_pred CCCC-CEEEEecCCCHHHHHHHHHHHHC------CCEEEEEECCccc
Confidence 5899 9999999764 999999999999 9987777666543
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.26 E-value=0.03 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.358 Sum_probs=21.2
Q ss_pred CEEEEEeccchHHHHHHHHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
|||.|||.|.+|.+.|..|.+.
T Consensus 1 mkV~VIGaGi~GlstA~~L~~~ 22 (246)
T d1kifa1 1 MRVVVIGAGVIGLSTALCIHER 22 (246)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH
T ss_pred CEEEEECchHHHHHHHHHHHHC
Confidence 6899999999999999999998
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=89.22 E-value=0.21 Score=42.78 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=33.4
Q ss_pred ccccCCCCEEEEEecc---chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 105 PDAFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G---~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+.+|+| |++-|-|.+ -||.++|+.|.+. |.+|++..+.
T Consensus 3 ~~~L~g-K~alVTGass~~GIG~aiA~~la~~------Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 3 PIDLRG-KRAFIAGIADDNGYGWAVAKSLAAA------GAEILVGTWV 43 (297)
T ss_dssp CCCCTT-CEEEEECCSSSSSHHHHHHHHHHHT------TCEEEEEEEH
T ss_pred CcCCCC-CEEEEECCCCCchHHHHHHHHHHHC------CCEEEEEeCc
Confidence 467999 999999986 3999999999999 9999887764
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=89.19 E-value=0.16 Score=42.47 Aligned_cols=31 Identities=26% Similarity=0.095 Sum_probs=28.1
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|.|||.|.+|.+.|..|.+. |.+|++.++..
T Consensus 7 vvIIGaGi~Gls~A~~La~~------G~~V~vlE~~~ 37 (276)
T d1ryia1 7 AVVIGGGIIGSAIAYYLAKE------NKNTALFESGT 37 (276)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCCC
Confidence 99999999999999999999 99998877653
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.3 Score=41.61 Aligned_cols=37 Identities=24% Similarity=0.063 Sum_probs=30.4
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
+.| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.+
T Consensus 1 i~G-KvalITGas~GIG~aia~~la~~------Ga~V~i~~r~~~ 38 (254)
T d2gdza1 1 VNG-KVALVTGAAQGIGRAFAEALLLK------GAKVALVDWNLE 38 (254)
T ss_dssp CTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCHH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCHH
Confidence 368 888888965 5999999999999 999887776643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=88.88 E-value=0.24 Score=38.44 Aligned_cols=34 Identities=24% Similarity=0.197 Sum_probs=30.2
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.+ ++|.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 34 ~~-k~v~VIGgG~iG~E~A~~l~~~------g~~Vtvie~~ 67 (133)
T d1q1ra2 34 AD-NRLVVIGGGYIGLEVAATAIKA------NMHVTLLDTA 67 (133)
T ss_dssp TT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cC-CEEEEECCchHHHHHHHHHHhh------Ccceeeeeec
Confidence 35 9999999999999999999999 9998877654
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=88.37 E-value=0.13 Score=43.54 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=44.5
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCce--ecCCCcCCHH---hhcCcCCE
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT--EENGTLGDIY---ETISGSDL 181 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~--~~~~~~~~~~---e~v~~ADv 181 (317)
|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+. +...+.+.. ..| ...+.+ +-+.+-|+
T Consensus 2 Lkg-K~~lVTGas~GIG~aia~~l~~~------Ga~V~~~~r~~----~~l~~~~~~~~~~D-v~~~~~~~~~~~g~iD~ 69 (234)
T d1o5ia_ 2 IRD-KGVLVLAASRGIGRAVADVLSQE------GAEVTICARNE----ELLKRSGHRYVVCD-LRKDLDLLFEKVKEVDI 69 (234)
T ss_dssp CTT-CEEEEESCSSHHHHHHHHHHHHT------TCEEEEEESCH----HHHHHTCSEEEECC-TTTCHHHHHHHSCCCSE
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH----HHHHhcCCcEEEcc-hHHHHHHHHHHhCCCcE
Confidence 789 999999964 5999999999999 99988777652 233334321 111 112223 34567899
Q ss_pred EEEcc
Q 021114 182 VLLLI 186 (317)
Q Consensus 182 VILav 186 (317)
+|...
T Consensus 70 lVnnA 74 (234)
T d1o5ia_ 70 LVLNA 74 (234)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 88753
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.31 E-value=0.2 Score=38.42 Aligned_cols=31 Identities=23% Similarity=0.100 Sum_probs=28.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
+++.|||.|.+|--+|..|++. |.+|.+..+
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~l------G~~Vtii~~ 51 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGI------GLDVTVMVR 51 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT------TCCEEEEES
T ss_pred CeEEEECCCccHHHHHHHHhhc------CCeEEEEEe
Confidence 6899999999999999999999 998877654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.24 E-value=0.28 Score=41.67 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
.|+| |++-|.|.+ -||.++|+.|.+. |++|++..|+.++
T Consensus 4 ~L~G-K~~lITGas~GIG~aia~~la~~------G~~V~~~~r~~~~ 43 (244)
T d1pr9a_ 4 FLAG-RRVLVTGAGKGIGRGTVQALHAT------GARVVAVSRTQAD 43 (244)
T ss_dssp CCTT-CEEEEESTTSHHHHHHHHHHHHT------TCEEEEEESCHHH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECCHHH
Confidence 4899 999999955 6999999999999 9998877765433
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.22 E-value=0.27 Score=36.84 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=28.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 22 ~~vvIiGgG~~G~E~A~~l~~~------g~~Vtlve~~ 53 (115)
T d1lvla2 22 QHLVVVGGGYIGLELGIAYRKL------GAQVSVVEAR 53 (115)
T ss_dssp SEEEEECCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHhhc------ccceEEEeee
Confidence 7999999999999999999999 9998776654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.17 E-value=0.67 Score=39.61 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 107 ~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.|+| |++-|.|.+. ||.++|+.|.+. |.+|++..|+
T Consensus 5 ~Lkg-K~alVTGas~GIG~aiA~~la~~------Ga~V~~~~r~ 41 (259)
T d1xq1a_ 5 SLKA-KTVLVTGGTKGIGHAIVEEFAGF------GAVIHTCARN 41 (259)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECC
Confidence 5789 9999999654 999999999999 9998777665
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=88.15 E-value=0.28 Score=37.24 Aligned_cols=32 Identities=31% Similarity=0.278 Sum_probs=28.9
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..|++. |.+|.+..+.
T Consensus 33 ~~vvIiGgG~iG~E~A~~l~~~------g~~Vtlv~~~ 64 (122)
T d1xhca2 33 GEAIIIGGGFIGLELAGNLAEA------GYHVKLIHRG 64 (122)
T ss_dssp SEEEEEECSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred CcEEEECCcHHHHHHHHHhhcc------cceEEEEecc
Confidence 8999999999999999999999 9998776654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=88.06 E-value=0.51 Score=40.78 Aligned_cols=94 Identities=16% Similarity=0.113 Sum_probs=64.7
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHH----CCceecCCCcCCHHhhc--CcCC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETI--SGSD 180 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~----~G~~~~~~~~~~~~e~v--~~AD 180 (317)
..+| ++|-=||+|.=. ++..+.+. |.+| ++.+.++...+.|++ .|+... ....+..+.+ ...|
T Consensus 118 ~~~g-~~VLDiGcGsG~--l~i~aa~~------g~~V-~gvDis~~av~~A~~na~~n~~~~~-~~~~d~~~~~~~~~fD 186 (254)
T d2nxca1 118 LRPG-DKVLDLGTGSGV--LAIAAEKL------GGKA-LGVDIDPMVLPQAEANAKRNGVRPR-FLEGSLEAALPFGPFD 186 (254)
T ss_dssp CCTT-CEEEEETCTTSH--HHHHHHHT------TCEE-EEEESCGGGHHHHHHHHHHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred cCcc-CEEEEcccchhH--HHHHHHhc------CCEE-EEEECChHHHHHHHHHHHHcCCcee-EEeccccccccccccc
Confidence 4578 999999999843 44455666 8775 588887776766553 454321 1134555554 4679
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
+|+.........++++++...||||-.++++
T Consensus 187 ~V~ani~~~~l~~l~~~~~~~LkpGG~lilS 217 (254)
T d2nxca1 187 LLVANLYAELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp EEEEECCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhccccccHHHHHHHHHHhcCCCcEEEEE
Confidence 9987766666677888899999999887754
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.91 E-value=0.35 Score=39.23 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=61.4
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEec-CCcccHHHHHHCCceec-CCCcCCHHhhcCc-----CC
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRSFAEARAAGFTEE-NGTLGDIYETISG-----SD 180 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r-~~~~s~~~A~~~G~~~~-~~~~~~~~e~v~~-----AD 180 (317)
.+ .+|-|.| .|.+|....+.++.. |.+++++.. ++++..+.+.+.|...- |....+..+.+++ .|
T Consensus 30 ~~-etVLI~gaaGgVG~~aiQlak~~------Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 30 SN-QTMVVSGAAGACGSLAGQIGHLL------GCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp SC-CEEEESSTTSTTGGGHHHHHHHT------TCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEECCCchhhHHHHHHHHHc------CCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCce
Confidence 34 6788888 699999999999988 986655544 43444445556674221 2333456665554 89
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEec
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~ 212 (317)
+|+=++- .+.+++.++.++++-.++.++
T Consensus 103 vv~D~vG----g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 103 VYFDNVG----GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EEEESSC----HHHHHHHHTTEEEEEEEEEC-
T ss_pred EEEecCC----chhHHHHhhhccccccEEEec
Confidence 9998875 245677778888877766443
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.66 E-value=0.21 Score=43.09 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=31.0
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|.|.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 3 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~l~~r~~ 39 (272)
T d1xkqa_ 3 FSN-KTVIITGSSNGIGRTTAILFAQE------GANVTITGRSS 39 (272)
T ss_dssp TTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCcCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 999999954 5999999999999 99988877653
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=87.52 E-value=0.53 Score=37.41 Aligned_cols=70 Identities=13% Similarity=0.088 Sum_probs=46.5
Q ss_pred cCCCCEEEEEec---cchHHHHHHHHHhhhhhhcCCce-EEEEecC----CcccHHHHHHCCceecCCCcCCHHhhcCcC
Q 021114 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (317)
Q Consensus 108 l~GikkIGIIG~---G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~----~~~s~~~A~~~G~~~~~~~~~~~~e~v~~A 179 (317)
|+| .+|++||= ++...|++..+... |.. +.+.... .+...+.+.+.|... ....+++++++++
T Consensus 2 l~g-l~i~~vGD~~nsrv~~Sli~~l~~~------~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~--~~~~d~~~a~~~a 72 (160)
T d1ekxa2 2 LDN-LHVAMVGDLKYGRTVHSLTQALAKF------DGNRFYFIAPDALAMPQYILDMLDEKGIAW--SLHSSIEEVMAEV 72 (160)
T ss_dssp SSS-CEEEEESCTTTCHHHHHHHHHHTTS------SSCEEEEECCGGGCCCHHHHHHHHHTTCCE--EECSCSTTTGGGC
T ss_pred CCC-CEEEEEcCCCccHHHHHHHHHHHHc------CCCeEEeeccchhhhhHHHHHHHhhhcccc--ccccCHHHHhCcC
Confidence 578 99999996 44899999998887 754 3343222 122234455555432 1256889999999
Q ss_pred CEEEEcc
Q 021114 180 DLVLLLI 186 (317)
Q Consensus 180 DvVILav 186 (317)
|+|....
T Consensus 73 Dvvy~~~ 79 (160)
T d1ekxa2 73 DILYMTR 79 (160)
T ss_dssp SEEEECC
T ss_pred ceEEeec
Confidence 9998543
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.13 E-value=0.33 Score=43.41 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=31.5
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEec
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r 148 (317)
..|+| ++|.|=|+|++|...|+.|.+. |.+|+...+
T Consensus 32 ~~L~g-ktvaIqGfGnVG~~~A~~L~e~------Gakvv~vsD 67 (293)
T d1hwxa1 32 PGFGD-KTFAVQGFGNVGLHSMRYLHRF------GAKCVAVGE 67 (293)
T ss_dssp SSSTT-CEEEEECCSHHHHHHHHHHHHT------TCEEEEEEE
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 57899 9999999999999999999999 998754443
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.13 E-value=0.33 Score=39.78 Aligned_cols=32 Identities=25% Similarity=0.182 Sum_probs=28.4
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~ 149 (317)
.+|.|||.|.-|.++|..|++. |+ +|.+..+.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~------Gi~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQA------GIGKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCSEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHhC------CCCeEEEEeCC
Confidence 5899999999999999999999 96 77777765
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.09 E-value=1.2 Score=35.52 Aligned_cols=93 Identities=18% Similarity=0.212 Sum_probs=63.0
Q ss_pred CCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceec-C-CCcCCHHhhc-----CcCC
Q 021114 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETI-----SGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~-~-~~~~~~~e~v-----~~AD 180 (317)
+| .+|.|.|. |.+|...++..+.. |.+|+...++ ++..+.+++.|.... + ......+++. ...|
T Consensus 29 ~G-~~VlV~ga~ggvG~~aiqlak~~------Ga~vi~~~~~-~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd 100 (182)
T d1v3va2 29 GG-ETVLVSAAAGAVGSVVGQIAKLK------GCKVVGAAGS-DEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYD 100 (182)
T ss_dssp SS-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESS-HHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEE
T ss_pred CC-CEEEEEeCCCchhHHHHHHHHcc------CCEEEEeCCC-HHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCc
Confidence 58 99999997 66888888888888 9987655554 445677888885321 1 1112223222 4589
Q ss_pred EEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 181 vVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
+|+=++.. +.+++.++.++++-.++..+.
T Consensus 101 ~v~D~vG~----~~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 101 CYFDNVGG----EFLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp EEEESSCH----HHHHHHGGGEEEEEEEEECCC
T ss_pred eeEEecCc----hhhhhhhhhccCCCeEEeecc
Confidence 99998862 356778888888887776653
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.09 E-value=0.25 Score=37.72 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=29.5
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..+.+. |.+|.+..+.
T Consensus 26 ~~~viiG~G~iglE~A~~~~~~------G~~Vtvi~~~ 57 (123)
T d1dxla2 26 KKLVVIGAGYIGLEMGSVWGRI------GSEVTVVEFA 57 (123)
T ss_dssp SEEEESCCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEEccchHHHHHHHHHHhc------CCeEEEEEEc
Confidence 7999999999999999999999 9999887664
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=87.06 E-value=0.53 Score=40.57 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=31.7
Q ss_pred ccCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 107 ~l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
.|+| |++-|-|. +-||.++|+.|.+. |.+|++..|+.
T Consensus 2 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~i~~r~~ 39 (276)
T d1bdba_ 2 KLKG-EAVLITGGASGLGRALVDRFVAE------GAKVAVLDKSA 39 (276)
T ss_dssp TTTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 3789 99999995 57999999999999 99988877653
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.67 E-value=0.34 Score=39.71 Aligned_cols=34 Identities=32% Similarity=0.330 Sum_probs=28.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.||+|||.|.-|.+.|..|++. +.|++|++.++.
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~----~~~~~V~v~e~~ 35 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKH----HSRAHVDIYEKQ 35 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH----CSSCEEEEECSS
T ss_pred CeEEEECccHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 5899999999999999999875 336788877654
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.51 E-value=0.94 Score=38.22 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=30.1
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|+| |++-|.| .+-||.++|+.|.+. |++|++..|+
T Consensus 4 l~g-K~alITGas~GIG~aia~~la~~------G~~Vi~~~r~ 39 (245)
T d2ag5a1 4 LDG-KVIILTAAAQGIGQAAALAFARE------GAKVIATDIN 39 (245)
T ss_dssp TTT-CEEEESSTTSHHHHHHHHHHHHT------TCEEEEEESC
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCC
Confidence 788 8887777 678999999999999 9998877765
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.35 E-value=0.27 Score=42.49 Aligned_cols=36 Identities=19% Similarity=0.272 Sum_probs=30.7
Q ss_pred cCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 2 L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 38 (274)
T d1xhla_ 2 FSG-KSVIITGSSNGIGRSAAVIFAKE------GAQVTITGRNE 38 (274)
T ss_dssp CTT-CEEEETTCSSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 689 999999965 5999999999999 99988777653
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=86.34 E-value=0.54 Score=38.94 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
..-.+ ++|.|||.|.-|-+.|..|++. |++|++....
T Consensus 45 ~~~~~-k~VvIIGaGpAGl~aA~~l~~~------G~~v~l~E~~ 81 (233)
T d1djqa3 45 QTKNK-DSVLIVGAGPSGSEAARVLMES------GYTVHLTDTA 81 (233)
T ss_dssp CCSSC-CEEEEECCSHHHHHHHHHHHHT------TCEEEEECSS
T ss_pred cccCC-ceEEEEcccHHHHHHHHHHHHh------ccceeeEeec
Confidence 33456 9999999999999999999999 9998888654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.03 E-value=0.28 Score=42.64 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.9
Q ss_pred CCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 111 ikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|..|.|||.|.-|.+.|..|.+. |++|.+...++
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~------g~~V~iiEk~~ 34 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKL------NKKVLVIEKRN 34 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGG------TCCEEEECSSS
T ss_pred CccEEEECCcHHHHHHHHHHHhC------CCcEEEEECCC
Confidence 45799999999999999999998 99998887653
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=85.94 E-value=0.61 Score=36.30 Aligned_cols=93 Identities=11% Similarity=0.018 Sum_probs=56.3
Q ss_pred ccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cceec---------------CC
Q 021114 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE---------------NG 167 (317)
Q Consensus 107 ~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~---------------~~ 167 (317)
.-+| .+|-.||+|.= ..+..|.+. |++| +|.|.++..++.|++. +.... .+
T Consensus 18 ~~~~-~rvLd~GCG~G--~~a~~la~~------G~~V-~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 18 VVPG-ARVLVPLCGKS--QDMSWLSGQ------GYHV-VGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp CCTT-CEEEETTTCCS--HHHHHHHHH------CCEE-EEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred CCCC-CEEEEecCcCC--HHHHHHHHc------CCce-EeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 3468 99999999984 355577777 9986 6777777777777652 11000 00
Q ss_pred CcCCH-HhhcCcCCEEEE-----ccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 168 TLGDI-YETISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 168 ~~~~~-~e~v~~ADvVIL-----avP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
...++ .+.....|+|+. ++++......++++...||||-.++
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~ 135 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGL 135 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEE
T ss_pred cccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEE
Confidence 01111 112234576654 3344344567788999999988654
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=85.92 E-value=0.43 Score=41.15 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=29.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHH-hhhhhhcCCceEEEEec
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLR 148 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr-~~~~~~~~G~~Vivg~r 148 (317)
...|+| ++|+|-|+|++|..+|+.|. +. |.+|+...+
T Consensus 27 ~~~l~g-~~v~IqGfGnVG~~~a~~L~~~~------G~kvv~vsD 64 (239)
T d1gtma1 27 WDTLKG-KTIAIQGYGNAGYYLAKIMSEDF------GMKVVAVSD 64 (239)
T ss_dssp CSCSTT-CEEEEECCSHHHHHHHHHHHHTT------CCEEEEEEC
T ss_pred CCCcCC-CEEEEECCCHHHHHHHHHHHHhc------Ccceeeccc
Confidence 356999 99999999999999999885 56 776654333
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=85.89 E-value=0.65 Score=39.43 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=30.8
Q ss_pred cCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |++-|-|. +-||.++|+.|.+. |.+|++..++.
T Consensus 4 L~g-K~alVTGas~GIG~aia~~la~~------Ga~V~~~~r~~ 40 (251)
T d1zk4a1 4 LDG-KVAIITGGTLGIGLAIATKFVEE------GAKVMITGRHS 40 (251)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 789 99999995 45999999999999 99988877653
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=85.68 E-value=1.3 Score=37.31 Aligned_cols=33 Identities=21% Similarity=0.329 Sum_probs=26.1
Q ss_pred CEEEEE-ecc-chHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 112 NQIGVI-GWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 112 kkIGII-G~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|||++| |.+ -||.++|+.|.+. |.+|++..|+.
T Consensus 1 KKValITGas~GIG~aia~~la~~------Ga~V~~~~r~~ 35 (255)
T d1gega_ 1 KKVALVTGAGQGIGKAIALRLVKD------GFAVAIADYND 35 (255)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCEEEEcCCccHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567655 654 5999999999999 99988777653
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=85.61 E-value=2.1 Score=34.29 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=57.1
Q ss_pred CCCCEEEEE--eccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc---HHHHHHCCceec-CC---CcCCHHhhc---
Q 021114 109 NGINQIGVI--GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEE-NG---TLGDIYETI--- 176 (317)
Q Consensus 109 ~GikkIGII--G~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s---~~~A~~~G~~~~-~~---~~~~~~e~v--- 176 (317)
+| .++.|+ |.|.+|.+..+.++.. |.+|+...+..+.. .+.+++.|...- +. ...+..+.+
T Consensus 28 ~g-~~vli~~ga~g~vG~~aiqlAk~~------Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 28 PG-KDWFIQNGGTSAVGKYASQIGKLL------NFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp TT-TCEEEESCTTSHHHHHHHHHHHHH------TCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred CC-CEEEEEeCCCchHHHHHHHHHhhc------CCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHH
Confidence 46 889998 6788999999999999 99887766554332 234556674320 00 000111111
Q ss_pred -----CcCCEEEEccCCchHHHHHHHHHhcCCCCcEEEEecC
Q 021114 177 -----SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (317)
Q Consensus 177 -----~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi~~~G 213 (317)
...|+|+=++-.. .+++.+..|+++..++..++
T Consensus 101 ~~~~g~~vdvv~D~vg~~----~~~~~~~~l~~~G~~v~~G~ 138 (189)
T d1gu7a2 101 IKQSGGEAKLALNCVGGK----SSTGIARKLNNNGLMLTYGG 138 (189)
T ss_dssp HHHHTCCEEEEEESSCHH----HHHHHHHTSCTTCEEEECCC
T ss_pred HhhccCCceEEEECCCcc----hhhhhhhhhcCCcEEEEECC
Confidence 2478888776532 34556677888777765543
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.51 E-value=0.96 Score=38.47 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=30.9
Q ss_pred ccCCCCEEEEEecc-chHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 107 ~l~GikkIGIIG~G-~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
.|+| |++-|-|.+ -||.++|+.|.+. |.+|++..|+
T Consensus 8 ~L~g-K~alITGas~GIG~aia~~la~~------Ga~V~~~~r~ 44 (255)
T d1fmca_ 8 RLDG-KCAIITGAGAGIGKEIAITFATA------GASVVVSDIN 44 (255)
T ss_dssp CCTT-CEEEETTTTSHHHHHHHHHHHTT------TCEEEEEESC
T ss_pred CCCC-CEEEEeCCCcHHHHHHHHHHHHC------CCEEEEEECC
Confidence 4789 999999964 6999999999999 9998877765
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=85.35 E-value=0.35 Score=39.89 Aligned_cols=74 Identities=22% Similarity=0.260 Sum_probs=46.8
Q ss_pred CEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCccc--H------HHHHHCCceecCCCcCC---HHhhcCcC
Q 021114 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS--F------AEARAAGFTEENGTLGD---IYETISGS 179 (317)
Q Consensus 112 kkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s--~------~~A~~~G~~~~~~~~~~---~~e~v~~A 179 (317)
|||.|+| .|.+|..+++.|.+. |++|++..|..... . ......++..-.+...+ ..+.++.+
T Consensus 4 kKILVtGatG~iG~~l~~~L~~~------G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 77 (307)
T d1qyca_ 4 SRILLIGATGYIGRHVAKASLDL------GHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNV 77 (307)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHT------TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhc
Confidence 7899999 599999999999999 99987776653221 1 11112233211111222 34567788
Q ss_pred CEEEEccCCchH
Q 021114 180 DLVLLLISDAAQ 191 (317)
Q Consensus 180 DvVILavP~~~~ 191 (317)
|.|+.+......
T Consensus 78 ~~vi~~~~~~~~ 89 (307)
T d1qyca_ 78 DVVISTVGSLQI 89 (307)
T ss_dssp SEEEECCCGGGS
T ss_pred eeeeeccccccc
Confidence 988877765443
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.35 E-value=0.73 Score=43.93 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=29.8
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEe
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~ 147 (317)
...|+. .+|.|||+|.+|.-++++|... |. .+++.+
T Consensus 20 Q~~L~~-s~VlvvG~gglG~Ei~knLvl~------GVg~itivD 56 (529)
T d1yova1 20 QEALES-AHVCLINATATGTEILKNLVLP------GIGSFTIID 56 (529)
T ss_dssp HHHHHH-CEEEECCCSHHHHHHHHHHHTT------TCSEEEEEC
T ss_pred HHHHhC-CCEEEECCCHHHHHHHHHHHHh------cCCEEEEEc
Confidence 466778 9999999999999999999988 76 454543
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=85.30 E-value=0.46 Score=36.47 Aligned_cols=32 Identities=16% Similarity=0.054 Sum_probs=29.3
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+++.|||.|.+|--+|..+++. |.+|.+..+.
T Consensus 27 ~~vvIiGgG~IG~E~A~~~~~~------G~~Vtive~~ 58 (125)
T d1ojta2 27 GKLLIIGGGIIGLEMGTVYSTL------GSRLDVVEMM 58 (125)
T ss_dssp SEEEEESCSHHHHHHHHHHHHH------TCEEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHhhcC------CCEEEEEEee
Confidence 7899999999999999999999 9998877664
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=84.94 E-value=0.53 Score=37.74 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=26.7
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|||.|||.|..|-.+|..|++. +.+.+|++..+.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~----~~~~~V~v~~~~ 34 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNL----HPDAEIQWYEKG 34 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHH----CTTSEEEEEESS
T ss_pred CEEEEECCcHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 7899999999999999999987 113466666543
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=84.59 E-value=0.48 Score=40.88 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=31.5
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
++| |||-|.| .|-+|..+++.|.+. |++|+...|..
T Consensus 6 ~~~-KkILVTG~tGfIGs~lv~~Ll~~------g~~V~~~~r~~ 42 (356)
T d1rkxa_ 6 WQG-KRVFVTGHTGFKGGWLSLWLQTM------GATVKGYSLTA 42 (356)
T ss_dssp HTT-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSC
T ss_pred hCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEECCC
Confidence 578 9999999 899999999999999 99987666654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=84.27 E-value=1.8 Score=36.47 Aligned_cols=35 Identities=23% Similarity=-0.017 Sum_probs=29.3
Q ss_pred cCCCCEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 108 l~GikkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|+| |.+-|.|. +-||.++|+.|.+. |.+|++..|+
T Consensus 8 len-KvalITGas~GIG~a~a~~la~~------Ga~V~~~~r~ 43 (251)
T d2c07a1 8 GEN-KVALVTGAGRGIGREIAKMLAKS------VSHVICISRT 43 (251)
T ss_dssp CSS-CEEEEESTTSHHHHHHHHHHTTT------SSEEEEEESS
T ss_pred CCC-CEEEEeCCCCHHHHHHHHHHHHc------CCEEEEEECC
Confidence 578 88888896 46999999999999 9998877765
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.14 E-value=0.43 Score=37.03 Aligned_cols=30 Identities=17% Similarity=-0.040 Sum_probs=27.7
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
+.|||.|.-|.+.|..|.+. |++|.+..+.
T Consensus 8 viViGaG~~Gl~~A~~La~~------G~~V~vlE~~ 37 (297)
T d2bcgg1 8 VIVLGTGITECILSGLLSVD------GKKVLHIDKQ 37 (297)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCCEEEEcCC
Confidence 79999999999999999999 9999888775
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=83.77 E-value=0.38 Score=35.67 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.6
Q ss_pred ccccCCCCEEEEEeccchHHHHHHHHHhh
Q 021114 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 105 ~~~l~GikkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
+.+++| |+|.|||.|+=|.-+|..|...
T Consensus 27 ~~~f~g-K~VlVVG~g~Sa~dia~~l~~~ 54 (107)
T d2gv8a2 27 PELFVG-ESVLVVGGASSANDLVRHLTPV 54 (107)
T ss_dssp GGGGTT-CCEEEECSSHHHHHHHHHHTTT
T ss_pred hhhcCC-CeEEEECCCCCHHHHHHHHHHh
Confidence 478999 9999999999999999999765
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.69 E-value=0.69 Score=38.20 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=46.4
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCc--eEEEEecCCcccHH-HHHHCCceecC-CCcCCHHhhcCcCCEE
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFA-EARAAGFTEEN-GTLGDIYETISGSDLV 182 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~--~Vivg~r~~~~s~~-~A~~~G~~~~~-~~~~~~~e~v~~ADvV 182 (317)
.++ |+|.|.| .|.+|..+.+.|.+. |. +|++..|+...... ..........| ....++.++++.+|+|
T Consensus 12 m~~-k~IlItGaTG~iG~~l~~~Ll~~------g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~v 84 (232)
T d2bkaa1 12 MQN-KSVFILGASGETGRVLLKEILEQ------GLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVG 84 (232)
T ss_dssp HTC-CEEEEECTTSHHHHHHHHHHHHH------TCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEE
T ss_pred CCC-CEEEEECCCcHHHHHHHHHHHhC------CCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccc
Confidence 356 8999999 899999999999988 74 67766665322111 11111111101 0123566778999999
Q ss_pred EEccC
Q 021114 183 LLLIS 187 (317)
Q Consensus 183 ILavP 187 (317)
+.++-
T Consensus 85 i~~~~ 89 (232)
T d2bkaa1 85 FCCLG 89 (232)
T ss_dssp EECCC
T ss_pred ccccc
Confidence 98764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=83.44 E-value=0.48 Score=36.90 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.2
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEE
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG 146 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg 146 (317)
++|.|||.|..|-.+|..|++. |.++.+.
T Consensus 4 ~~VvIIGgG~~G~e~A~~l~~~------g~~v~v~ 32 (185)
T d1q1ra1 4 DNVVIVGTGLAGVEVAFGLRAS------GWEGNIR 32 (185)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT------TCCSEEE
T ss_pred CCEEEECCcHHHHHHHHHHHHc------CCceEEE
Confidence 7999999999999999999998 8764433
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.43 E-value=0.55 Score=39.15 Aligned_cols=30 Identities=37% Similarity=0.372 Sum_probs=27.5
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|.|||.|.-|-+-|..|++. |++|++.++.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~------G~~V~VlE~~ 31 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDS------GLNVVVLEAR 31 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHT------TCCEEEEESS
T ss_pred EEEECCCHHHHHHHHHHHhC------CCCEEEEecC
Confidence 78999999999999999999 9999888754
|
| >d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Homoserine dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.81 E-value=3.6 Score=32.69 Aligned_cols=22 Identities=32% Similarity=0.364 Sum_probs=19.6
Q ss_pred CEEEEEeccchHHHHHHHHHhh
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDS 133 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~ 133 (317)
-+|+++|+|++|.++++.|.+.
T Consensus 5 i~I~l~G~G~VG~~l~~~l~~~ 26 (168)
T d1ebfa1 5 VNVAVIGAGVVGSAFLDQLLAM 26 (168)
T ss_dssp EEEEEECCSHHHHHHHHHHHHC
T ss_pred EEEEEEeCCHHHHHHHHHHHHh
Confidence 4699999999999999988865
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.73 E-value=2.9 Score=38.42 Aligned_cols=96 Identities=16% Similarity=0.093 Sum_probs=59.0
Q ss_pred cCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC---------------Cce---ecCCC-
Q 021114 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------------GFT---EENGT- 168 (317)
Q Consensus 108 l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~---------------G~~---~~~~~- 168 (317)
-+| .+|.=||+|. |.......+.. |...++|.+..+...+.|++. +.. ...+.
T Consensus 215 kpg-d~fLDLGCG~-G~~vl~aA~~~------g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~ 286 (406)
T d1u2za_ 215 KKG-DTFMDLGSGV-GNCVVQAALEC------GCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV 286 (406)
T ss_dssp CTT-CEEEEESCTT-SHHHHHHHHHH------CCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred CCC-CEEEeCCCCC-cHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence 345 7888899998 44444444555 654457887766554444321 110 00000
Q ss_pred -cCCHHhhcCcCCEEEEcc--CCchHHHHHHHHHhcCCCCcEEEEe
Q 021114 169 -LGDIYETISGSDLVLLLI--SDAAQADNYEKIFSCMKPNSILGLS 211 (317)
Q Consensus 169 -~~~~~e~v~~ADvVILav--P~~~~~~vl~ei~~~lk~gaiVi~~ 211 (317)
....++.+..+|+|++.. -+......+.+++..||||..|+.+
T Consensus 287 ~~~~~d~~~~~adVV~inn~~f~~~l~~~L~ei~r~LKPGGrIVs~ 332 (406)
T d1u2za_ 287 DNNRVAELIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISL 332 (406)
T ss_dssp TCHHHHHHGGGCSEEEECCTTCCHHHHHHHHHHHTTCCTTCEEEES
T ss_pred hccccccccccceEEEEecccCchHHHHHHHHHHHhcCCCcEEEEe
Confidence 122456788999999853 3444556888999999999987754
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=81.69 E-value=1.8 Score=36.68 Aligned_cols=36 Identities=19% Similarity=0.154 Sum_probs=30.2
Q ss_pred cCCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCC
Q 021114 108 FNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (317)
Q Consensus 108 l~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~ 150 (317)
|+| |.+-|.| .+-||.++|+.|.+. |.+|++..|+.
T Consensus 3 l~g-KvalVTGas~GIG~aia~~la~~------Ga~V~~~~r~~ 39 (264)
T d1spxa_ 3 FAE-KVAIITGSSNGIGRATAVLFARE------GAKVTITGRHA 39 (264)
T ss_dssp TTT-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESCH
T ss_pred CCC-CEEEEeCcCCHHHHHHHHHHHHC------CCEEEEEECCH
Confidence 788 8888888 467999999999999 99988777653
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=81.64 E-value=0.57 Score=39.12 Aligned_cols=30 Identities=23% Similarity=0.179 Sum_probs=27.3
Q ss_pred EEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecC
Q 021114 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (317)
Q Consensus 114 IGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~ 149 (317)
|.|||.|..|.+.|..|.+. |++|++.++.
T Consensus 6 vvIIGaGi~Gls~A~~La~~------G~~V~viE~~ 35 (281)
T d2gf3a1 6 VIVVGAGSMGMAAGYQLAKQ------GVKTLLVDAF 35 (281)
T ss_dssp EEEECCSHHHHHHHHHHHHT------TCCEEEECSS
T ss_pred EEEECcCHHHHHHHHHHHHC------CCcEEEEeCC
Confidence 89999999999999999999 9998887764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=81.46 E-value=4.1 Score=34.51 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=57.1
Q ss_pred cccCCCCEEEEEeccchHHHHHHHHHhhhhhhcCCce-EEEEecC-----C--c---cc--HHHHHHCCceecCCCcCCH
Q 021114 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRK-----G--S---RS--FAEARAAGFTEENGTLGDI 172 (317)
Q Consensus 106 ~~l~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~-Vivg~r~-----~--~---~s--~~~A~~~G~~~~~~~~~~~ 172 (317)
+.|+. .+|.|.|.|.-|-.+|+.|++. +.+ ++..+++ + . .. ...+..... .....++
T Consensus 22 ~~l~d-~riv~~GAGsAg~gia~~l~~~------~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~---~~~~~~l 91 (222)
T d1vl6a1 22 KKIEE-VKVVVNGIGAAGYNIVKFLLDL------GVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP---ERLSGDL 91 (222)
T ss_dssp CCTTT-CEEEEECCSHHHHHHHHHHHHH------TCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT---TCCCSCH
T ss_pred CChhh-cEEEEEChHHHHHHHHHHHHHh------cccceEeecceeEEEcCcccccccHHHHHHHhhhcc---hhhhcch
Confidence 45667 8999999999999999999988 774 4333332 1 0 00 111211111 1224578
Q ss_pred HhhcCcCCEEEEccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 173 ~e~v~~ADvVILavP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
.++++.+|+++...-.....+ |+...|.+..+|.
T Consensus 92 ~~~l~g~~~~~g~~~~~~~~~---e~m~~~~~rPIIF 125 (222)
T d1vl6a1 92 ETALEGADFFIGVSRGNILKP---EWIKKMSRKPVIF 125 (222)
T ss_dssp HHHHTTCSEEEECSCSSCSCH---HHHTTSCSSCEEE
T ss_pred HhhccCcceeccccccccccH---HHHhhcCCCCEEE
Confidence 899999999888775444322 4455666666665
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=81.46 E-value=2.9 Score=32.34 Aligned_cols=90 Identities=18% Similarity=0.285 Sum_probs=67.1
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.||-|-|. |..|.-.++.+++. |-+++.|..++..-. .-.|+.. +.+.+|+++ ++|.=++-+|+
T Consensus 7 trVlvQGiTG~~G~~ht~~m~~y------GT~vVaGVtPgkgG~---~~~giPV----f~sV~eAv~~~~~~~SvIfVPp 73 (119)
T d2nu7a1 7 TKVICQGFTGSQGTFHSEQAIAY------GTKMVGGVTPGKGGT---THLGLPV----FNTVREAVAATGATASVIYVPA 73 (119)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTE---EETTEEE----ESSHHHHHHHHCCCEEEECCCG
T ss_pred CcEEEEcCCCcHHHHHHHHHHHh------CCceEEEEccCCCCc---ccCCCch----hhHHHHHHHHhCCCeEEEeccH
Confidence 68999996 99999999999999 999888877643110 1145554 568888765 68999999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+ .++.+-+.++ .+++++-|+..
T Consensus 74 ~~a~dA~~EAi~agI~--~iV~ITEgIP~ 100 (119)
T d2nu7a1 74 PFCKDSILEAIDAGIK--LIITITEGIPT 100 (119)
T ss_dssp GGHHHHHHHHHHTTCS--EEEECCCCCCH
T ss_pred HHHHHHHHHHHHCCCC--EEEEecCCCCH
Confidence 88776 6666766663 36778888854
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.08 E-value=1.1 Score=36.94 Aligned_cols=91 Identities=14% Similarity=0.106 Sum_probs=57.7
Q ss_pred CCCCEEEEEeccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCC-cee----------------c----CC
Q 021114 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTE----------------E----NG 167 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G-~~~----------------~----~~ 167 (317)
+| .+|-.+|||. +..+..|.+. |++| +|.|-++..++.+++.. ... . +-
T Consensus 45 ~~-~rvLd~GCG~--G~~a~~LA~~------G~~V-~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 114 (229)
T d2bzga1 45 SG-LRVFFPLCGK--AVEMKWFADR------GHSV-VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL 114 (229)
T ss_dssp CS-CEEEETTCTT--CTHHHHHHHT------TCEE-EEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred CC-CEEEEeCCCC--cHHHHHHHhC------CCcE-EEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence 66 8999999999 3667777788 9986 68888776676665421 000 0 00
Q ss_pred CcCCHHhh----cCcCCEEEE-----ccCCchHHHHHHHHHhcCCCCcEEE
Q 021114 168 TLGDIYET----ISGSDLVLL-----LISDAAQADNYEKIFSCMKPNSILG 209 (317)
Q Consensus 168 ~~~~~~e~----v~~ADvVIL-----avP~~~~~~vl~ei~~~lk~gaiVi 209 (317)
...|..+. ...-|+|+- ++++......++++...||||..++
T Consensus 115 ~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~ 165 (229)
T d2bzga1 115 YCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYL 165 (229)
T ss_dssp EESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEE
T ss_pred EEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEE
Confidence 01222222 223466653 4566666678889999999998754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=81.01 E-value=0.95 Score=37.03 Aligned_cols=94 Identities=16% Similarity=0.290 Sum_probs=55.8
Q ss_pred CCCCEEEEEeccchHHH--HHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHC----Cceec-CCCcCCHHhh-cCcCC
Q 021114 109 NGINQIGVIGWGSQGPA--QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYET-ISGSD 180 (317)
Q Consensus 109 ~GikkIGIIG~G~mG~A--iA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~----G~~~~-~~~~~~~~e~-v~~AD 180 (317)
+| .+|.=||+|.-..+ +++.+... +.+| +|.|.++..++.|++. +.... .....+..+. ..+.|
T Consensus 39 ~~-~~vLDlGCGtG~~~~~l~~~~~~~------~~~v-~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d 110 (225)
T d1im8a_ 39 AD-SNVYDLGCSRGAATLSARRNINQP------NVKI-IGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNAS 110 (225)
T ss_dssp TT-CEEEEESCTTCHHHHHHHHTCCCS------SCEE-EEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEE
T ss_pred CC-CEEEEeccchhhHHHHHHHhhcCC------CCce-EEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccce
Confidence 56 89999999764333 34333334 6665 6888877777777642 21100 0001122221 24567
Q ss_pred EEEEc-----cCCchHHHHHHHHHhcCCCCcEEEE
Q 021114 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGL 210 (317)
Q Consensus 181 vVILa-----vP~~~~~~vl~ei~~~lk~gaiVi~ 210 (317)
+|+.. +++.....+++++...||||-++++
T Consensus 111 ~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~ 145 (225)
T d1im8a_ 111 MVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVL 145 (225)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred eeEEeeeccccChhhHHHHHHHHHHhCCCCceeec
Confidence 76653 3555566799999999999988764
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.86 E-value=0.88 Score=39.58 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=43.9
Q ss_pred CCCCEEEEEe-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHH-HHHHCCceecCCCcCC---HHhhcCcCCEEE
Q 021114 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTEENGTLGD---IYETISGSDLVL 183 (317)
Q Consensus 109 ~GikkIGIIG-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~-~A~~~G~~~~~~~~~~---~~e~v~~ADvVI 183 (317)
++ |||.|.| .|-+|..+++.|.+. |++|++.++....... ......+.. ....+ ..+++++.|.|+
T Consensus 14 ~n-MKILVTGgsGfIGs~lv~~L~~~------g~~V~~~d~~~~~~~~~~~~~~~~~~--~D~~~~~~~~~~~~~~d~Vi 84 (363)
T d2c5aa1 14 EN-LKISITGAGGFIASHIARRLKHE------GHYVIASDWKKNEHMTEDMFCDEFHL--VDLRVMENCLKVTEGVDHVF 84 (363)
T ss_dssp SC-CEEEEETTTSHHHHHHHHHHHHT------TCEEEEEESSCCSSSCGGGTCSEEEE--CCTTSHHHHHHHHTTCSEEE
T ss_pred CC-CEEEEECCCCHHHHHHHHHHHHC------cCEEEEEeCCCccchhhhcccCcEEE--eechhHHHHHHHhhcCCeEe
Confidence 67 8999999 999999999999999 9998766554322111 111111211 11223 334567899888
Q ss_pred Ecc
Q 021114 184 LLI 186 (317)
Q Consensus 184 Lav 186 (317)
-+.
T Consensus 85 h~a 87 (363)
T d2c5aa1 85 NLA 87 (363)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=80.84 E-value=2.7 Score=35.03 Aligned_cols=33 Identities=15% Similarity=0.276 Sum_probs=26.5
Q ss_pred EEEE-e-ccchHHHHHHHHHhhhhhhcCCceEEEEecCCcc
Q 021114 114 IGVI-G-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (317)
Q Consensus 114 IGII-G-~G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~ 152 (317)
|+|| | .+-||.++|+.|.+. |.+|++..+++.+
T Consensus 4 VAlITGas~GIG~aiA~~la~~------Ga~V~i~~~~~~~ 38 (284)
T d1e7wa_ 4 VALVTGAAKRLGRSIAEGLHAE------GYAVCLHYHRSAA 38 (284)
T ss_dssp EEEETTCSSHHHHHHHHHHHHT------TCEEEEEESSCHH
T ss_pred EEEEeCCCCHHHHHHHHHHHHc------CCEEEEEeCCCHH
Confidence 6666 5 456999999999999 9999887776543
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.55 E-value=0.73 Score=38.88 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=32.6
Q ss_pred ccCCCCEEEEEeccc-hHHHHHHHHHhhhhhhcCCceEEEEecCCc
Q 021114 107 AFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (317)
Q Consensus 107 ~l~GikkIGIIG~G~-mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~ 151 (317)
.|+| |++-|-|.+. ||.++|+.|.+. |.+|++..|..+
T Consensus 4 sl~g-K~~lITGas~GIG~aia~~la~~------Ga~V~~~~r~~~ 42 (237)
T d1uzma1 4 PFVS-RSVLVTGGNRGIGLAIAQRLAAD------GHKVAVTHRGSG 42 (237)
T ss_dssp CCCC-CEEEETTTTSHHHHHHHHHHHHT------TCEEEEEESSSC
T ss_pred CCCC-CEEEEeCCCCHHHHHHHHHHHHC------CCEEEEEECCcc
Confidence 4899 9999999764 999999999999 999888777643
|
| >d1euca1 c.2.1.8 (A:1-130) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=80.31 E-value=2.6 Score=33.03 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=67.7
Q ss_pred CEEEEEec-cchHHHHHHHHHhhhhhhcCCceEEEEecCCcccHHHHHHCCceecCCCcCCHHhhcC--cCCEEEEccCC
Q 021114 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (317)
Q Consensus 112 kkIGIIG~-G~mG~AiA~~Lr~~~~~~~~G~~Vivg~r~~~~s~~~A~~~G~~~~~~~~~~~~e~v~--~ADvVILavP~ 188 (317)
.+|-|-|. |..|.-.++.+++. |-+++.|..++..-. .-.|+.. +.+.+|+++ ++|.=++-+|+
T Consensus 16 TrVivQGiTG~~G~~ht~~m~~Y------GT~iVaGVtPgKgG~---~~~giPV----f~tV~eA~~~~~~daSvIfVPp 82 (130)
T d1euca1 16 TKVICQGFTGKQGTFHSQQALEY------GTNLVGGTTPGKGGK---THLGLPV----FNTVKEAKEQTGATASVIYVPP 82 (130)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHH------TCEEEEEECTTCTTC---EETTEEE----ESSHHHHHHHHCCCEEEECCCH
T ss_pred CeEEEEcCCCcHHHHHHHHHHHh------cCCeEEeeccCCCCc---cccCccc----hhhHHHHHHhcCCcEEEEecCH
Confidence 68999996 99999999999999 999888876542100 0135554 568888875 79999999999
Q ss_pred chHHH-HHHHHHhcCCCCcEEEEecCchh
Q 021114 189 AAQAD-NYEKIFSCMKPNSILGLSHGFLL 216 (317)
Q Consensus 189 ~~~~~-vl~ei~~~lk~gaiVi~~~Gv~l 216 (317)
....+ +++.+-+.++ .+++++-|+..
T Consensus 83 ~~a~dAi~EAi~agI~--liV~ITEgIPv 109 (130)
T d1euca1 83 PFAAAAINEAIDAEVP--LVVCITEGIPQ 109 (130)
T ss_dssp HHHHHHHHHHHHTTCS--EEEECCCCCCH
T ss_pred HHHHHHHHHHHhCCCC--EEEEecCCCCH
Confidence 88876 6666766664 36778888864
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=80.07 E-value=0.66 Score=39.19 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=27.0
Q ss_pred CEEEEEeccchHHHHHHHHHhhhhhhcCCc-eEEEEecC
Q 021114 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK 149 (317)
Q Consensus 112 kkIGIIG~G~mG~AiA~~Lr~~~~~~~~G~-~Vivg~r~ 149 (317)
.+|.|||.|.+|.+.|..|.+. |. +|.+.++.
T Consensus 2 ~dViIIGaGi~G~s~A~~La~~------G~~~V~liE~~ 34 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVTR------GWNNITVLDQG 34 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT------TCCCEEEECSS
T ss_pred CCEEEECcCHHHHHHHHHHHHc------CCCcEEEEeCC
Confidence 3699999999999999999988 86 57776654
|