Citrus Sinensis ID: 021133

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
cEEEEEccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHccccHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccc
ccEEEEcHHHHHHHcEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcEEEEEEccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc
mhvvpvqlplistlskirlsvppdlrplDARQSILLAVQELEsrfpqglpklnpvkdmkiedpevVDLVNQIEELEHKlfahplnksqdenQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFngtfndldhHQVAALAscfipvdkssEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRgimfsnslyl
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELEsrfpqglpklnpvkdmkiEDPEVVDLVNQIEELEHKLFahplnksqdeNQIRCFQRKAEVNHEIQqlkskmrdsqiQKFRDELKNRSRVLKKlghinadgvvqlKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQnecklevnvDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAqavgevnlEKKFAAaseslrrgimfsnslyl
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
*****VQLPLISTLSKIRLSVP**LRPLDARQSILLAVQEL*********************PEVVDLVNQIEELEHKLFAH***********************************************RVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDK****INL****************KIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA******************
MHVVPVQLPLISTLSKIRLS*************************PQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQL***M*****QKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVD************AKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRxxxxxxxxxxxxxxxxxxxxxKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query317 2.2.26 [Sep-21-2011]
Q9CZU31040 Superkiller viralicidic a yes no 0.996 0.303 0.462 2e-81
P422851042 Superkiller viralicidic a yes no 0.996 0.303 0.459 4e-81
O142321117 ATP-dependent RNA helicas yes no 0.990 0.281 0.416 5e-65
Q232231026 mRNA transport homolog 4 yes no 0.984 0.304 0.4 2e-60
P470471073 ATP-dependent RNA helicas yes no 0.990 0.292 0.408 7e-60
O137991030 Uncharacterized helicase no no 0.984 0.302 0.355 1e-45
Q154771246 Helicase SKI2W OS=Homo sa no no 0.876 0.223 0.319 1e-30
O598011213 Putative ATP-dependent RN no no 0.813 0.212 0.314 1e-28
P352071287 Antiviral helicase SKI2 O no no 0.671 0.165 0.312 2e-21
>sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 Back     alignment and function desciption
 Score =  302 bits (774), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 147/318 (46%), Positives = 218/318 (68%), Gaps = 2/318 (0%)

Query: 1    MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
            M VVPV + L+S +S +RL +P DLRP+D RQS+L ++QE++ RFP G+P L+P+ DM I
Sbjct: 724  MQVVPVLVHLLSAISTVRLYIPKDLRPVDNRQSVLKSIQEVQRRFPDGVPLLDPIDDMGI 783

Query: 61   EDPEVVDLVNQIEELEHKLFAHPL-NKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
            +D  +  ++ ++E  EH++++HPL N    E      +RKA++  +I+  K +++ ++  
Sbjct: 784  QDQGLKKVIQKVEAFEHRMYSHPLHNDPNLETVYTLCERKAQIALDIKSAKRELKKARTV 843

Query: 120  KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
               DELK R RVL++LG   +  V+++KGR AC I + DELL+TE+MFNG FNDL   Q 
Sbjct: 844  LQMDELKCRKRVLRRLGFATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSSEQA 903

Query: 180  AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239
             AL SCF+  + SSE   L  +LA PL+Q+QE A++IA++  E KLE++ + Y+ S+ +P
Sbjct: 904  TALLSCFVFQENSSEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEETYL-SSFKP 962

Query: 240  FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 299
             LMDV+Y W+ GATFA + +MTD+FEGSIIR  RRL+E L Q+  AA+A+G   LE KFA
Sbjct: 963  HLMDVVYTWATGATFAHICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFA 1022

Query: 300  AASESLRRGIMFSNSLYL 317
                 ++R I+F+ SLYL
Sbjct: 1023 EGITKIKRDIVFAASLYL 1040
May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3
>sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 Back     alignment and function description
>sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 Back     alignment and function description
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 Back     alignment and function description
>sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 Back     alignment and function description
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 Back     alignment and function description
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 Back     alignment and function description
>sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 Back     alignment and function description
>sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
359484919 995 PREDICTED: superkiller viralicidic activ 1.0 0.318 0.902 1e-167
297736019 938 unnamed protein product [Vitis vinifera] 1.0 0.337 0.902 1e-167
224087335 985 predicted protein [Populus trichocarpa] 1.0 0.321 0.886 1e-165
356523685 976 PREDICTED: superkiller viralicidic activ 1.0 0.324 0.845 1e-159
449470374 1014 PREDICTED: superkiller viralicidic activ 1.0 0.312 0.842 1e-159
356513235 982 PREDICTED: LOW QUALITY PROTEIN: superkil 1.0 0.322 0.845 1e-158
18396436 995 RNA helicase, ATP-dependent, SK12/DOB1 p 1.0 0.318 0.845 1e-158
16024936 991 HUA enhancer 2 [Arabidopsis thaliana] 1.0 0.319 0.845 1e-158
297831726 984 HUA enhancer 2 [Arabidopsis lyrata subsp 1.0 0.322 0.848 1e-157
357520641 984 ATP-dependent RNA helicase DOB1 [Medicag 1.0 0.322 0.845 1e-157
>gi|359484919|ref|XP_002266524.2| PREDICTED: superkiller viralicidic activity 2-like 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 286/317 (90%), Positives = 303/317 (95%)

Query: 1   MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
           MHVVPVQL LIS LSK+R+S+PPDLRPL+ARQSILLAVQEL +RFPQGLPKLNPVKDM I
Sbjct: 679 MHVVPVQLSLISALSKLRISIPPDLRPLEARQSILLAVQELGTRFPQGLPKLNPVKDMGI 738

Query: 61  EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
           EDPE V+L NQIEELE KLFAHPL+KSQDENQIR FQRKAEVNHEIQQLK+KMRDSQ+QK
Sbjct: 739 EDPEFVELANQIEELEQKLFAHPLHKSQDENQIRSFQRKAEVNHEIQQLKTKMRDSQLQK 798

Query: 121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
           FRDELKNRSRVLKKLGHI+ADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct: 799 FRDELKNRSRVLKKLGHIDADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858

Query: 181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF 240
           ALASCFIP DKS+EQI+LR ELAKPLQQLQ+SAR+IAEIQ+ECKLEVNVDEYVEST RP+
Sbjct: 859 ALASCFIPGDKSTEQIHLRTELAKPLQQLQDSARRIAEIQHECKLEVNVDEYVESTARPY 918

Query: 241 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 300
           LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAA AVGE NLE KFAA
Sbjct: 919 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAANAVGEANLENKFAA 978

Query: 301 ASESLRRGIMFSNSLYL 317
           ASESLRRGIMF+NSLYL
Sbjct: 979 ASESLRRGIMFANSLYL 995

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297736019|emb|CBI24057.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224087335|ref|XP_002308126.1| predicted protein [Populus trichocarpa] gi|222854102|gb|EEE91649.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356523685|ref|XP_003530466.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|449470374|ref|XP_004152892.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356513235|ref|XP_003525319.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Glycine max] Back     alignment and taxonomy information
>gi|18396436|ref|NP_565338.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] gi|20197305|gb|AAC67203.2| expressed protein [Arabidopsis thaliana] gi|28973761|gb|AAO64196.1| putative DEAD/DEAH box RNA helicase (HUA ENHANCER2) [Arabidopsis thaliana] gi|330250934|gb|AEC06028.1| RNA helicase, ATP-dependent, SK12/DOB1 protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16024936|gb|AAL11446.1| HUA enhancer 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297831726|ref|XP_002883745.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] gi|297329585|gb|EFH60004.1| HUA enhancer 2 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357520641|ref|XP_003630609.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] gi|355524631|gb|AET05085.1| ATP-dependent RNA helicase DOB1 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query317
TAIR|locus:2063648995 HEN2 "hua enhancer 2" [Arabido 1.0 0.318 0.845 1.6e-141
MGI|MGI:19194481040 Skiv2l2 "superkiller viralicid 0.996 0.303 0.459 2.7e-75
UNIPROTKB|F5H7E2941 SKIV2L2 "Superkiller viralicid 0.996 0.335 0.455 3.5e-75
UNIPROTKB|P422851042 SKIV2L2 "Superkiller viralicid 0.996 0.303 0.455 3.5e-75
RGD|1305984337 Skiv2l2 "superkiller viralicid 0.996 0.937 0.455 4.5e-75
UNIPROTKB|E2RCI51042 SKIV2L2 "Uncharacterized prote 0.996 0.303 0.455 5.7e-75
UNIPROTKB|F1SLL61046 SKIV2L2 "Uncharacterized prote 0.996 0.302 0.454 5.1e-74
ZFIN|ZDB-GENE-040426-28541034 skiv2l2 "superkiller viralicid 0.996 0.305 0.449 5.1e-74
FB|FBgn00019861055 l(2)35Df "lethal (2) 35Df" [Dr 0.996 0.299 0.459 2.2e-72
UNIPROTKB|F1N9931031 F1N993 "Uncharacterized protei 0.996 0.306 0.443 3.1e-72
TAIR|locus:2063648 HEN2 "hua enhancer 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1384 (492.3 bits), Expect = 1.6e-141, P = 1.6e-141
 Identities = 268/317 (84%), Positives = 301/317 (94%)

Query:     1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
             MHVVPVQLPLIS LS++R+SVP DLRP++ARQSILLA+QEL SRFP G PKL+PVKDM I
Sbjct:   679 MHVVPVQLPLISALSRLRISVPSDLRPVEARQSILLALQELSSRFPLGFPKLHPVKDMNI 738

Query:    61 EDPEVVDLVNQIEELEHKLFAHPLNKSQDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQK 120
             +D E+VDLV+QIEE+E KL AHP++KS+D+ QI+ FQRKAEVN+EIQQLKSKMRDSQ+QK
Sbjct:   739 QDTEIVDLVSQIEEVEQKLLAHPMHKSEDDQQIKSFQRKAEVNYEIQQLKSKMRDSQLQK 798

Query:   121 FRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 180
             FRDELKNRSRVLKKLGHI+ADGVVQ+KGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA
Sbjct:   799 FRDELKNRSRVLKKLGHIDADGVVQVKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVA 858

Query:   181 ALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPF 240
             ALASCFIPVDKS+EQ+NLR EL KPLQQLQ+SARKIAEIQ+ECKLE++V+EYVEST+RPF
Sbjct:   859 ALASCFIPVDKSNEQVNLRNELTKPLQQLQDSARKIAEIQHECKLEIDVEEYVESTIRPF 918

Query:   241 LMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAA 300
             LMDVIY WSKGA+FAE+IQMTDIFEGSIIRSARRLDEFLNQLRAAA+AVGE +LE KFAA
Sbjct:   919 LMDVIYSWSKGASFAEIIQMTDIFEGSIIRSARRLDEFLNQLRAAAEAVGESSLESKFAA 978

Query:   301 ASESLRRGIMFSNSLYL 317
             ASESLRRGIMF+NSLYL
Sbjct:   979 ASESLRRGIMFANSLYL 995
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004386 "helicase activity" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS
GO:0016817 "hydrolase activity, acting on acid anhydrides" evidence=IEA
GO:0016818 "hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA
GO:0003724 "RNA helicase activity" evidence=ISS
GO:0010093 "specification of floral organ identity" evidence=IMP
GO:0016070 "RNA metabolic process" evidence=TAS
GO:0005829 "cytosol" evidence=IDA
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0003002 "regionalization" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0007155 "cell adhesion" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010388 "cullin deneddylation" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016571 "histone methylation" evidence=RCA
GO:0016579 "protein deubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0033043 "regulation of organelle organization" evidence=RCA
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048449 "floral organ formation" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1305984 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1N993 F1N993 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VI0599
hypothetical protein (986 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.86.17.1
hypothetical protein (573 aa)
   •    0.421
gw1.I.4832.1
hypothetical protein (422 aa)
   •  • 0.401
estExt_Genewise1_v1.C_LG_VII2715
hypothetical protein (380 aa)
   •    0.400

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
pfam08148178 pfam08148, DSHCT, DSHCT (NUC185) domain 3e-66
COG45811041 COG4581, COG4581, Superfamily II RNA helicase [DNA 5e-57
pfam13234266 pfam13234, rRNA_proc-arch, rRNA-processing arch do 7e-40
cd13154129 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain 2e-18
cd00192262 cd00192, PTKc, Catalytic domain of Protein Tyrosin 4e-04
>gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain Back     alignment and domain information 
 Score =  205 bits (523), Expect = 3e-66
 Identities = 86/181 (47%), Positives = 122/181 (67%), Gaps = 4/181 (2%)

Query: 138 INADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAALASCFIPVDKS-SEQI 196
           I+ DGVV LKGR AC I + DELL+TEL+F+G FNDLD  ++AAL S F+  ++   E  
Sbjct: 1   IDDDGVVTLKGRVACEISSEDELLLTELLFSGFFNDLDPEELAALLSAFVFEERRDDEGY 60

Query: 197 NLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFLMDVIYCWSKGATFAE 256
              +ELA+ L +L E ARK+A+++ E    ++  EYVE      LM+V+Y W++GA+F+E
Sbjct: 61  PPSLELAEALNRLLEIARKLAKVEREHG--LDEPEYVER-FDFGLMEVVYEWARGASFSE 117

Query: 257 VIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLY 316
           + + TD+FEG I+R  RRLDE L QL  AA+ +G+  L +K   A E +RR I+F+ SLY
Sbjct: 118 ICEETDLFEGDIVRVIRRLDELLRQLANAAKIIGDPELAEKAEEAIELIRRDIVFAASLY 177

Query: 317 L 317
           L
Sbjct: 178 L 178

This C terminal domain is found in DOB1/SK12/helY-like DEAD box helicases. Length = 178
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain Back     alignment and domain information
>gnl|CDD|240518 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain in Mtr4 globular domain Back     alignment and domain information
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 317
KOG09481041 consensus Nuclear exosomal RNA helicase MTR4, DEAD 100.0
KOG09471248 consensus Cytoplasmic exosomal RNA helicase SKI2, 100.0
PF08148180 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 100.0
COG45811041 Superfamily II RNA helicase [DNA replication, reco 100.0
PF13234268 rRNA_proc-arch: rRNA-processing arch domain; PDB: 99.84
COG1202830 Superfamily II helicase, archaea-specific [General 93.17
PF04408102 HA2: Helicase associated domain (HA2); InterPro: I 92.79
PRK02362737 ski2-like helicase; Provisional 89.93
PRK00254720 ski2-like helicase; Provisional 89.65
smart0084792 HA2 Helicase associated domain (HA2) Add an annota 85.83
PRK01172674 ski2-like helicase; Provisional 82.36
PRK11664 812 ATP-dependent RNA helicase HrpB; Provisional 81.95
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-84  Score=645.19  Aligned_cols=316  Identities=57%  Similarity=0.887  Sum_probs=312.6

Q ss_pred             CEEEEeecCccccccceeEEcCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 021133            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (317)
Q Consensus         1 ~~~~~v~~~~i~~is~~~~~lp~~~~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~~~~~l~~~l~   80 (317)
                      |.++||+++.|..||++|+++|+++++.++|..+..++.++.++||.|+|.+||++||+|.+.++.++.++++.|+.++.
T Consensus       725 ~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~~~~~~k~e~lE~~l~  804 (1041)
T KOG0948|consen  725 MEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEFKKLVKKIESLEARLE  804 (1041)
T ss_pred             eEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHHHHHHHHHHHHHHhhc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCCh
Q 021133           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (317)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~e  159 (317)
                      .||.|.. ..++.++.+.++..|..++.++++++++.+...+++|+++|++||++|||++.++++.+||||||||+|+||
T Consensus       805 ~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvie~KGrvACEIsSgDE  884 (1041)
T KOG0948|consen  805 SHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVIELKGRVACEISSGDE  884 (1041)
T ss_pred             cCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeEEEcceEEEEecccch
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcc
Q 021133          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP  239 (317)
Q Consensus       160 LlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~  239 (317)
                      |++|||||+|.|++|+|+|+||+|||||||++.++.+.+.++|..++.++++.|++|++++.+|++++++++|+++ |+|
T Consensus       885 LlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecKlEide~~Yv~s-Fkp  963 (1041)
T KOG0948|consen  885 LLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECKLEIDEEDYVES-FKP  963 (1041)
T ss_pred             HHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHh-cCh
Confidence            9999999999999999999999999999999999889999999999999999999999999999999999999999 999


Q ss_pred             cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCccccCCCCC
Q 021133          240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL  317 (317)
Q Consensus       240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdIVf~~SLYl  317 (317)
                      +||+|||+||+|+||++||++||+|||+|||++|||+||||||.+||++|||.+|.+||+.|+.+||||||||+||||
T Consensus       964 ~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~ikRDIVFAaSLYL 1041 (1041)
T KOG0948|consen  964 ELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKIKRDIVFAASLYL 1041 (1041)
T ss_pred             HHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhceeehhhccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997

>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] Back     alignment and domain information
>PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] Back     alignment and domain information
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A Back     alignment and domain information
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only] Back     alignment and domain information
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length Back     alignment and domain information
>PRK02362 ski2-like helicase; Provisional Back     alignment and domain information
>PRK00254 ski2-like helicase; Provisional Back     alignment and domain information
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation Back     alignment and domain information
>PRK01172 ski2-like helicase; Provisional Back     alignment and domain information
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
2xgj_A1010 Structure Of Mtr4, A Dexh Helicase Involved In Nucl 4e-61
3l9o_A1108 Crystal Structure Of Mtr4, A Co-Factor Of The Nucle 4e-61
4a4z_A997 Crystal Structure Of The S. Cerevisiae Dexh Helicas 1e-22
>pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 Back     alignment and structure 
Iteration: 1

 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/316 (40%), Positives = 209/316 (66%), Gaps = 2/316 (0%)
Query: 3    VVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIED 62
            V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKIED
Sbjct: 696  VIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIED 755
Query: 63   PEVVDLVNQIEELEHKLFAHPLNKSQDENQIRC-FQRKAEVNHEIQQLKSKMRDSQIQKF 121
             + + L+ +I+ L  KL ++PL  S    ++   + RK +++ +++QLK K+ +SQ    
Sbjct: 756  EDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQ 815
Query: 122  RDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQVAA 181
             D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q AA
Sbjct: 816  LDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAA 875
Query: 182  LASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRPFL 241
            L SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES  R  L
Sbjct: 876  LLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRHEL 934
Query: 242  MDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAA 301
            M+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++K  A 
Sbjct: 935  MEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAV 994
Query: 302  SESLRRGIMFSNSLYL 317
             + + R I+ + SLYL
Sbjct: 995  LKLIHRDIVSAGSLYL 1010
>pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 Back     alignment and structure
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query317
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 1e-104
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 1e-102
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 7e-88
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 Back     alignment and structure
 Score =  324 bits (832), Expect = e-104
 Identities = 130/318 (40%), Positives = 208/318 (65%), Gaps = 2/318 (0%)

Query: 1    MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKI 60
              V+P+ L  I ++  +RL +P D+R    ++++  +++E+  RFP G+P L+PVK+MKI
Sbjct: 694  CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKI 753

Query: 61   EDPEVVDLVNQIEELEHKLFAHPLNKSQD-ENQIRCFQRKAEVNHEIQQLKSKMRDSQIQ 119
            ED + + L+ +I+ L  KL ++PL  S   E     + RK +++ +++QLK K+ +SQ  
Sbjct: 754  EDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAV 813

Query: 120  KFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDELLVTELMFNGTFNDLDHHQV 179
               D+L+ R RVL++LG    + +++LKGR AC I +GDELL+TEL+FNG FN+L   Q 
Sbjct: 814  IQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQA 873

Query: 180  AALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP 239
            AAL SCF   ++  E   L+ ELA+PL+ ++E A KIA+I  + K+EV   +YVES  R 
Sbjct: 874  AALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRH 932

Query: 240  FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFA 299
             LM+V+Y W +GATF ++ +MTD++EGS+IR  +RL+E + +L   A  +G  +L++K  
Sbjct: 933  ELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKME 992

Query: 300  AASESLRRGIMFSNSLYL 317
            A  + + R I+ + SLYL
Sbjct: 993  AVLKLIHRDIVSAGSLYL 1010
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
2xgj_A1010 ATP-dependent RNA helicase DOB1; hydrolase-RNA com 100.0
3l9o_A1108 ATP-dependent RNA helicase DOB1; REC-A fold, winge 100.0
4a4z_A997 Antiviral helicase SKI2; hydrolase, ATPase, mRNA d 100.0
2va8_A715 SSO2462, SKI2-type helicase; hydrolase, DNA repair 96.51
2p6r_A702 Afuhel308 helicase; protein-DNA complex, SF2 helic 95.06
2zj8_A720 DNA helicase, putative SKI2-type helicase; RECA fo 94.4
3i4u_A270 ATP-dependent RNA helicase DHX8; splicing, ATP-bin 90.46
4dyq_A140 Gene 1 protein; GP1, octamer, DNA-binding, viral p 88.67
1p4x_A250 Staphylococcal accessory regulator A homologue; wi 81.5
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=100.00  E-value=2.8e-79  Score=655.55  Aligned_cols=316  Identities=41%  Similarity=0.726  Sum_probs=307.7

Q ss_pred             CEEEEeecCccccccceeEEcCCCCCChhHHHHHHHHHHHHHHhCCCCCCCCCccccCCCCChHHHHHHHHHHHHHHHHH
Q 021133            1 MHVVPVQLPLISTLSKIRLSVPPDLRPLDARQSILLAVQELESRFPQGLPKLNPVKDMKIEDPEVVDLVNQIEELEHKLF   80 (317)
Q Consensus         1 ~~~~~v~~~~i~~is~~~~~lp~~~~~~~~r~~~~~~l~~~~~~~~~~~p~l~p~~~~~i~~~~~~~~~~~~~~l~~~l~   80 (317)
                      |.++||++++|..||++++++|+++++...|+.+.+++.++.+++|++.|.+||+++|++++.++.+...+++.|++++.
T Consensus       694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  773 (1010)
T 2xgj_A          694 CAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNTKLS  773 (1010)
T ss_dssp             EEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTSCCCCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhhccccHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCCCCCccchhhHHhhhhcCCCh
Q 021133           81 AHPLNKS-QDENQIRCFQRKAEVNHEIQQLKSKMRDSQIQKFRDELKNRSRVLKKLGHINADGVVQLKGRAACLIDTGDE  159 (317)
Q Consensus        81 ~~p~~~c-~~~~~~~~~~~~~~l~~~~~~l~~~i~~~~~~~~~~ef~~~~~vL~~lgyid~~~~vt~kGrvA~eI~s~~e  159 (317)
                      +||||.| ++++|+++++++.+++.+++++++++++.+++.++++|+++++||++|||||++++||+|||+||+|+++||
T Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~~~~~~~v~~kGr~a~~i~~~~e  853 (1010)
T 2xgj_A          774 SNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGFCTPNDIIELKGRVACEISSGDE  853 (1010)
T ss_dssp             TSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSBCTTCCBCHHHHHHHTCCSSCH
T ss_pred             hCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCCcCCCCcccHHHHHHHHhcCccH
Confidence            9999999 999999999999999999999999999988888899999999999999999988999999999999999999


Q ss_pred             HHHHHHHhhCCCCCCCHHHHHHHhhhcccccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhhhccCcc
Q 021133          160 LLVTELMFNGTFNDLDHHQVAALASCFIPVDKSSEQINLRMELAKPLQQLQESARKIAEIQNECKLEVNVDEYVESTVRP  239 (317)
Q Consensus       160 LlltEll~~g~f~~L~p~elaAllS~~v~e~~~~~~~~~~~~l~~~~~~l~~~a~~i~~~~~~~~l~~~~~~~~~~~~~~  239 (317)
                      ||+|||||+|+|++|+|+||||+|||||||+++++.|.+++.|.+++++++++|++|+++|.+||+++++++|+++ |+|
T Consensus       854 l~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  932 (1010)
T 2xgj_A          854 LLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVES-FRH  932 (1010)
T ss_dssp             HHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHT-SCC
T ss_pred             HHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHhccc-CCh
Confidence            9999999999999999999999999999999988888899999999999999999999999999999999999999 999


Q ss_pred             cHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCccccCCCCC
Q 021133          240 FLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGIMFSNSLYL  317 (317)
Q Consensus       240 ~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdIVf~~SLYl  317 (317)
                      +||++||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||++|+++|||||||++||||
T Consensus       933 ~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A          933 ELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp             TTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCGGGGCCCC-C
T ss_pred             HHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhccCCeEecccccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999997
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Back     alignment and structure
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Back     alignment and structure
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Back     alignment and structure
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Back     alignment and structure
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Back     alignment and structure
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Back     alignment and structure
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A Back     alignment and structure
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query317
d2p6ra2198 Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 92.74
>d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
class: All alpha proteins
fold: Sec63 N-terminal domain-like
superfamily: Sec63 N-terminal domain-like
family: Achaeal helicase C-terminal domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.74  E-value=0.079  Score=44.08  Aligned_cols=71  Identities=13%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             ccHHHHHHHhhCCCCHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhhcCCc
Q 021133          239 PFLMDVIYCWSKGATFAEVIQMTDIFEGSIIRSARRLDEFLNQLRAAAQAVGEVNLEKKFAAASESLRRGI  309 (317)
Q Consensus       239 ~~l~~vv~~Wa~G~~f~ei~~~t~l~EGdiVR~irRl~ellrQl~~aa~~ig~~~L~~k~~~a~~~I~RdI  309 (317)
                      +..+-+++.|.++.|..+|++..++..||+=+......=++..+...++.+|..+|.+--.+-..-++.++
T Consensus        73 ~KtAl~L~dwi~E~~~~~I~~~y~v~~Gdl~~~~~~a~wl~~~~~~~~~~~~~~~l~~L~~Rl~~Gv~~el  143 (198)
T d2p6ra2          73 VKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNTSVSGLTERIKHGVKEEL  143 (198)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSTTHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHccCCHHH
Confidence            45667889999999999999999999999999888888999999999999888766554444444444443