Citrus Sinensis ID: 021144

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------

MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

cccccccccHHHHHHHHHHcccEEEEccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEcccHHccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccHHHHHHHHHHccccccccccc

cccccccHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccccccHHHHHccHHHHHHHHHHHHHccccEEEEccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccccccEEEEEEcccccEccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEEEEccccccccccHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHHHHHcHHEEcccEEEEEccc

mvsgsngttsFMTDFLqkcggysvvdggFATELerhgadlndplwsakclvssphlvrkVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRcmkdswdftgsgrissrpVLVAASVGsygayladgseysgdygdavsLETLKEFHRRRVLILANSgadliafeTIPNKLEAKAYAELLEeegitipawfsfnskdginvvsgdsILECASIADSCEQVVAVGinctsprfIHGLILSVRkvtskpviiypnsgetYNAELKKWVVSFSlhffplelilnpfascrlisffsr

mvsgsngttSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNkleakayaelleeeGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

**********FMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFF**

***************LQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFT***RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

********TSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

*****NGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS*******RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFFSR

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		317	2.2.26 [Sep-21-2011]
Q8LAX0		347	Homocysteine S-methyltran	yes	no	0.895	0.818	0.757	1e-129
Q9M1W4		333	Homocysteine S-methyltran	no	no	0.870	0.828	0.715	1e-118
P56707		338	Selenocysteine methyltran	N/A	no	0.886	0.831	0.705	1e-117
Q4VNK0		346	Selenocysteine Se-methylt	N/A	no	0.899	0.823	0.683	1e-114
Q9FUM9		339	Homocysteine S-methyltran	N/A	no	0.895	0.837	0.666	1e-111
Q9FUM8		338	Homocysteine S-methyltran	N/A	no	0.889	0.834	0.660	1e-109
Q9FUM7		342	Homocysteine S-methyltran	N/A	no	0.848	0.786	0.661	1e-107
A4ZGQ8		326	Homocysteine S-methyltran	N/A	no	0.886	0.861	0.531	8e-88
Q9SDL7		326	Homocysteine S-methyltran	no	no	0.870	0.846	0.540	1e-86
Q9FUN0		323	Homocysteine S-methyltran	N/A	no	0.842	0.826	0.531	2e-86

>sp\|Q8LAX0\|HMT3_ARATH Homocysteine S-methyltransferase 3 OS=Arabidopsis thaliana GN=HMT3 PE=1 SV=2	Back alignment and function desciption

 Score =  462 bits (1189), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 215/284 (75%), Positives = 251/284 (88%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct: 9   TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct: 69  GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct: 129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEA+AYA+LLEEE I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct: 189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query: 248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVS 291
           INCT+PR+IH LI+S+R++T KP+++YPNSGE Y+   KKW+ S
Sbjct: 249 INCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKS 292

Catalyzes methyl transfer from S-methylmethionine (SMM) to adenosyl-L-homocysteine (AdoMet). SMM degradation (by HMT-1, HMT-2 and HMT-3) and biosynthesis (by MMT1) constitute the SMM cycle in plants, which is probably required to achieve short term control of AdoMet level.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 0

>sp\|Q9M1W4\|HMT2_ARATH Homocysteine S-methyltransferase 2 OS=Arabidopsis thaliana GN=HMT-2 PE=1 SV=1	Back alignment and function description

>sp\|P56707\|SMTA_ASTBI Selenocysteine methyltransferase OS=Astragalus bisulcatus GN=SMTA PE=1 SV=1	Back alignment and function description

>sp\|Q4VNK0\|SMTA_BRAOT Selenocysteine Se-methyltransferase OS=Brassica oleracea var. italica GN=SMT PE=1 SV=1	Back alignment and function description

>sp\|Q9FUM9\|HMT2_MAIZE Homocysteine S-methyltransferase 2 OS=Zea mays GN=HMT-2 PE=2 SV=1	Back alignment and function description

>sp\|Q9FUM8\|HMT3_MAIZE Homocysteine S-methyltransferase 3 OS=Zea mays GN=HMT-3 PE=2 SV=1	Back alignment and function description

>sp\|Q9FUM7\|HMT4_MAIZE Homocysteine S-methyltransferase 4 OS=Zea mays GN=HMT-4 PE=2 SV=1	Back alignment and function description

>sp\|A4ZGQ8\|HMT1_BRAOT Homocysteine S-methyltransferase 1 OS=Brassica oleracea var. italica GN=HMT1 PE=1 SV=1	Back alignment and function description

>sp\|Q9SDL7\|HMT1_ARATH Homocysteine S-methyltransferase 1 OS=Arabidopsis thaliana GN=HMT-1 PE=1 SV=1	Back alignment and function description

>sp\|Q9FUN0\|HMT1_MAIZE Homocysteine S-methyltransferase 1 OS=Zea mays GN=HMT-1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		317
255552095		348	5-methyltetrahydrofolate:homocysteine me	0.895	0.816	0.855	1e-143
224107975		338	homocysteine s-methyltransferase [Populu	0.902	0.846	0.842	1e-142
449522026		338	PREDICTED: homocysteine S-methyltransfer	0.892	0.837	0.787	1e-132
449455288		338	PREDICTED: homocysteine S-methyltransfer	0.892	0.837	0.784	1e-131
224102091		339	homocysteine s-methyltransferase [Populu	0.895	0.837	0.852	1e-131
452090884		368	homocysteine S-methyltransferase, partia	0.880	0.758	0.786	1e-131
224085515		341	homocysteine s-methyltransferase [Populu	0.889	0.826	0.769	1e-130
363807204		341	uncharacterized protein LOC100811127 [Gl	0.895	0.832	0.792	1e-130
255638530		341	unknown [Glycine max]	0.895	0.832	0.792	1e-130
297835280		347	homocysteine S-methyltransferase 3 [Arab	0.895	0.818	0.760	1e-128

>gi\|255552095\|ref\|XP_002517092.1\| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis] gi\|223543727\|gb\|EEF45255.1\| 5-methyltetrahydrofolate:homocysteine methyltransferase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  514 bits (1323), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 243/284 (85%), Positives = 264/284 (92%)

Query: 8   TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
           T SFM+DFLQKCGGY+V+DGGFATELERHGADLNDPLWSAKCL+SSPHLVR+VHLDY+DA
Sbjct: 9   TRSFMSDFLQKCGGYAVIDGGFATELERHGADLNDPLWSAKCLISSPHLVRRVHLDYIDA 68

Query: 68  GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
           GANII+TASYQATIQGFEAKG STEEAE LLRRSVEIACEAREIYYD C K SWD    G
Sbjct: 69  GANIILTASYQATIQGFEAKGLSTEEAEQLLRRSVEIACEAREIYYDNCTKGSWDLMEDG 128

Query: 128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
           ++S  PVLVAAS+GSYGAYLADGSEYSGDYGDAVS++TLK+FHRRR+ ILA SGADLIAF
Sbjct: 129 KMSRHPVLVAASIGSYGAYLADGSEYSGDYGDAVSIQTLKDFHRRRLQILAKSGADLIAF 188

Query: 188 ETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
           ETIPNKLEAKAYAELLEEEGI IPAWFSFNSKDGINVVSGDSILECASIADS +QVVAVG
Sbjct: 189 ETIPNKLEAKAYAELLEEEGINIPAWFSFNSKDGINVVSGDSILECASIADSSKQVVAVG 248

Query: 248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVS 291
           INCT PRFIHGLILS+R+ TSKP++IYPNSGETY+A LK+WV S
Sbjct: 249 INCTPPRFIHGLILSMREATSKPIVIYPNSGETYDAALKQWVKS 292

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224107975\|ref\|XP_002314674.1\| homocysteine s-methyltransferase [Populus trichocarpa] gi\|222863714\|gb\|EEF00845.1\| homocysteine s-methyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449522026\|ref\|XP_004168029.1\| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449455288\|ref\|XP_004145385.1\| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus] gi\|449472065\|ref\|XP_004153485.1\| PREDICTED: homocysteine S-methyltransferase 3-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|224102091\|ref\|XP_002312542.1\| homocysteine s-methyltransferase [Populus trichocarpa] gi\|222852362\|gb\|EEE89909.1\| homocysteine s-methyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|452090884\|gb\|AGF95112.1\| homocysteine S-methyltransferase, partial [Prunus persica]	Back alignment and taxonomy information

>gi\|224085515\|ref\|XP_002307602.1\| homocysteine s-methyltransferase [Populus trichocarpa] gi\|222857051\|gb\|EEE94598.1\| homocysteine s-methyltransferase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|363807204\|ref\|NP_001242352.1\| uncharacterized protein LOC100811127 [Glycine max] gi\|255644435\|gb\|ACU22722.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|255638530\|gb\|ACU19573.1\| unknown [Glycine max]	Back alignment and taxonomy information

>gi\|297835280\|ref\|XP_002885522.1\| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata] gi\|297331362\|gb\|EFH61781.1\| homocysteine S-methyltransferase 3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		317
TAIR\|locus:2094419		347	HMT3 "homocysteine S-methyltra	0.895	0.818	0.714	1.1e-110
TAIR\|locus:2077234		333	HMT2 "homocysteine methyltrans	0.867	0.825	0.684	3.3e-102
UNIPROTKB\|Q4VNK0		346	SMT "Selenocysteine Se-methylt	0.899	0.823	0.659	4.2e-102
UNIPROTKB\|A4ZGQ8		326	HMT1 "Homocysteine S-methyltra	0.886	0.861	0.493	5.7e-75
TAIR\|locus:2092120		326	HMT-1 [Arabidopsis thaliana (t	0.870	0.846	0.501	6.5e-74
UNIPROTKB\|Q47690		310	mmuM [Escherichia coli K-12 (t	0.788	0.806	0.433	2.9e-48
ZFIN\|ZDB-GENE-030131-9545		311	zgc:172121 "zgc:172121" [Danio	0.835	0.852	0.367	5.3e-40
FB\|FBgn0032726		331	CG10621 [Drosophila melanogast	0.813	0.779	0.315	8.3e-35
FB\|FBgn0032727		331	CG10623 [Drosophila melanogast	0.798	0.764	0.327	8.3e-35
SGD\|S000003985		324	MHT1 "S-methylmethionine-homoc	0.776	0.759	0.272	1.7e-18

TAIR\|locus:2094419 HMT3 "homocysteine S-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1093 (389.8 bits), Expect = 1.1e-110, P = 1.1e-110
 Identities = 203/284 (71%), Positives = 237/284 (83%)

Query:     8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDA 67
             T+S MTDFL+KCGGY+VVDGGFATEL+RHGAD+NDPLWSAKCL++SPHLV KVHLDYL++
Sbjct:     9 TSSLMTDFLEKCGGYAVVDGGFATELQRHGADINDPLWSAKCLITSPHLVTKVHLDYLES 68

Query:    68 GANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSG 127
             GANIIITASYQATIQGF AKG S  EAE LLRRSVEI  EAREI+Y+RC K SWDF  +G
Sbjct:    69 GANIIITASYQATIQGFVAKGLSVGEAENLLRRSVEITYEAREIFYNRCTKGSWDFAYAG 128

Query:   128 RISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAF 187
             + S RP+LVAASVGSYGAYLADGSEYSG YGD+VS ETLK+FHRRRV ILA SGADLIAF
Sbjct:   129 KASRRPILVAASVGSYGAYLADGSEYSGIYGDSVSKETLKDFHRRRVQILAKSGADLIAF 188

Query:   188 ETIPNXXXXXXXXXXXXXXGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVG 247
             ETIPN               I IPAWFSF SKDG++V  GDS++ECA +ADSC+ VVA+G
Sbjct:   189 ETIPNKLEAEAYADLLEEEDIDIPAWFSFTSKDGVSVPRGDSVVECAKVADSCKNVVAIG 248

Query:   248 INCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVS 291
             INCT+PR+IH LI+S+R++T KP+++YPNSGE Y+   KKW+ S
Sbjct:   249 INCTAPRYIHALIISLRQMTRKPIVVYPNSGEVYDGLNKKWIKS 292

GO:0005737 "cytoplasm" evidence=ISM

GO:0008898 "homocysteine S-methyltransferase activity" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR\|locus:2077234 HMT2 "homocysteine methyltransferase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q4VNK0 SMT "Selenocysteine Se-methyltransferase" [Brassica oleracea var. italica (taxid:36774)]	Back alignment and assigned GO terms

UNIPROTKB\|A4ZGQ8 HMT1 "Homocysteine S-methyltransferase 1" [Brassica oleracea var. italica (taxid:36774)]	Back alignment and assigned GO terms

TAIR\|locus:2092120 HMT-1 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q47690 mmuM [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-030131-9545 zgc:172121 "zgc:172121" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0032726 CG10621 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

FB\|FBgn0032727 CG10623 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

SGD\|S000003985 MHT1 "S-methylmethionine-homocysteine methyltransferase" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4ZGQ8	HMT1_BRAOT	2, ., 1, ., 1, ., 1, 0	0.5312	0.8864	0.8619	N/A	no
Q9M1W4	HMT2_ARATH	2, ., 1, ., 1, ., 1, 0	0.7158	0.8706	0.8288	no	no
Q9FUN0	HMT1_MAIZE	2, ., 1, ., 1, ., 1, 0	0.5319	0.8422	0.8266	N/A	no
P56707	SMTA_ASTBI	2, ., 1, ., 1, ., n, 3	0.7056	0.8864	0.8313	N/A	no
Q8LAX0	HMT3_ARATH	2, ., 1, ., 1, ., 1, 0	0.7570	0.8958	0.8184	yes	no
Q4VNK0	SMTA_BRAOT	2, ., 1, ., 1, ., n, 3	0.6838	0.8990	0.8236	N/A	no
Q9FUM8	HMT3_MAIZE	2, ., 1, ., 1, ., 1, 0	0.6608	0.8895	0.8343	N/A	no
Q9FUM9	HMT2_MAIZE	2, ., 1, ., 1, ., 1, 0	0.6666	0.8958	0.8377	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.976
4th Layer	2.1.1.10	0.991

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	HMT2	homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00880022	RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (485 aa)	•	•	0.928
	estExt_Genewise1_v1.C_LG_I3343	adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (EC-3.3.1.1) (485 aa)	•	•	0.928
	AdoMet5	s-adenosylmethionine synthetase 5 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (392 aa)	•	•	0.927
	METK3	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (396 aa)	•	•	0.927
	AdoMet3	s-adenosylmethionine synthetase 3 (EC-2.5.1.6); Catalyzes the formation of S-adenosylmethionine [...] (395 aa)	•	•	0.927
	METK4	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (391 aa)	•	•	0.927
	METK2	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)	•	•	0.926
	METK1	RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenos [...] (393 aa)	•	•	0.926
	AMT7	aminotransferase family protein (EC-2.6.1.5) (407 aa)	•		0.899
	fgenesh4_pg.C_LG_III001784	methionine gamma-lyase (EC-4.4.1.11) (417 aa)	•		0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		317
PLN02489		335	PLN02489, PLN02489, homocysteine S-methyltransfera	0.0
PRK09485		304	PRK09485, mmuM, homocysteine methyltransferase; Pr	1e-130
pfam02574		303	pfam02574, S-methyl_trans, Homocysteine S-methyltr	1e-82
COG2040		300	COG2040, MHT1, Homocysteine/selenocysteine methyla	3e-80
COG0646		311	COG0646, MetH, Methionine synthase I (cobalamin-de	3e-23
PRK08645		612	PRK08645, PRK08645, bifunctional homocysteine S-me	1e-22
TIGR02082		1178	TIGR02082, metH, 5-methyltetrahydrofolate--homocys	3e-11
PRK09490		1229	PRK09490, metH, B12-dependent methionine synthase;	1e-08
PRK07534		336	PRK07534, PRK07534, methionine synthase I; Validat	5e-07

>gnl\|CDD\|215269 PLN02489, PLN02489, homocysteine S-methyltransferase	Back alignment and domain information

 Score =  555 bits (1433), Expect = 0.0
 Identities = 213/291 (73%), Positives = 252/291 (86%), Gaps = 1/291 (0%)

Query: 1   MVSGSNGTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKV 60
                   +S + D L++ GG +V+DGGFATELERHGADLNDPLWSAKCL++SPHL+RKV
Sbjct: 1   GGYVLPQMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKV 60

Query: 61  HLDYLDAGANIIITASYQATIQGFEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDS 120
           HLDYL+AGA+IIITASYQATIQGFE++G S EE+E LLR+SVEIACEAR+I++D+C K S
Sbjct: 61  HLDYLEAGADIIITASYQATIQGFESRGLSREESETLLRKSVEIACEARDIFWDKCQKGS 120

Query: 121 WDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANS 180
               G   +S RP+LVAAS+GSYGAYLADGSEYSGDYG +V+LE LK+FHRRR+ +LA +
Sbjct: 121 TSRPG-RELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKLKDFHRRRLQVLAEA 179

Query: 181 GADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSC 240
           G DLIAFETIPNKLEA+AY ELLEEE I IPAW SFNSKDG+NVVSGDS+LECASIADSC
Sbjct: 180 GPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSC 239

Query: 241 EQVVAVGINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVS 291
           ++VVAVGINCT PRFIHGLILS+RKVTSKP+++YPNSGETY+ E K+WV S
Sbjct: 240 KKVVAVGINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVES 290

Length = 335

>gnl\|CDD\|181899 PRK09485, mmuM, homocysteine methyltransferase; Provisional	Back alignment and domain information

>gnl\|CDD\|217114 pfam02574, S-methyl_trans, Homocysteine S-methyltransferase	Back alignment and domain information

>gnl\|CDD\|224951 COG2040, MHT1, Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|223719 COG0646, MetH, Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|236321 PRK08645, PRK08645, bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed	Back alignment and domain information

>gnl\|CDD\|233714 TIGR02082, metH, 5-methyltetrahydrofolate--homocysteine methyltransferase	Back alignment and domain information

>gnl\|CDD\|236539 PRK09490, metH, B12-dependent methionine synthase; Provisional	Back alignment and domain information

>gnl\|CDD\|236045 PRK07534, PRK07534, methionine synthase I; Validated	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		317
PLN02489		335	homocysteine S-methyltransferase	100.0
PRK09485		304	mmuM homocysteine methyltransferase; Provisional	100.0
COG2040		300	MHT1 Homocysteine/selenocysteine methylase (S-meth	100.0
KOG1579		317	consensus Homocysteine S-methyltransferase [Amino	100.0
PF02574		305	S-methyl_trans: Homocysteine S-methyltransferase;	100.0
PRK07534		336	methionine synthase I; Validated	100.0
COG0646		311	MetH Methionine synthase I (cobalamin-dependent),	100.0
PRK09490		1229	metH B12-dependent methionine synthase; Provisiona	100.0
PRK08645		612	bifunctional homocysteine S-methyltransferase/5,10	100.0
TIGR02082		1178	metH 5-methyltetrahydrofolate--homocysteine methyl	100.0
cd06557		254	KPHMT-like Ketopantoate hydroxymethyltransferase (	95.58
TIGR00683		290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	95.09
PRK00311		264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	95.06
cd00408		281	DHDPS-like Dihydrodipicolinate synthase family. A	94.84
cd00377		243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	94.32
COG0329		299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	94.3
cd02810		289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	94.14
PRK03620		303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	94.12
TIGR03249		296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	94.08
PF00701		289	DHDPS: Dihydrodipicolinate synthetase family; Inte	93.81
COG0159		265	TrpA Tryptophan synthase alpha chain [Amino acid t	93.46
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	93.38
cd00952		309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	93.31
cd00950		284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	93.06
TIGR01037		300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	92.99
cd00954		288	NAL N-Acetylneuraminic acid aldolase, also called	92.99
TIGR00222		263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	92.91
TIGR02317		285	prpB methylisocitrate lyase. Members of this famil	92.9
PRK11320		292	prpB 2-methylisocitrate lyase; Provisional	92.78
cd00951		289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	92.67
PRK05458		326	guanosine 5'-monophosphate oxidoreductase; Provisi	92.6
COG0646		311	MetH Methionine synthase I (cobalamin-dependent),	92.5
TIGR02320		285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	92.38
TIGR00674		285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	92.31
PRK04147		293	N-acetylneuraminate lyase; Provisional	92.22
PRK05286		344	dihydroorotate dehydrogenase 2; Reviewed	92.07
PRK05692		287	hydroxymethylglutaryl-CoA lyase; Provisional	91.91
TIGR02319		294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	91.64
PRK08645		612	bifunctional homocysteine S-methyltransferase/5,10	91.61
PRK06843		404	inosine 5-monophosphate dehydrogenase; Validated	91.43
TIGR02313		294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	91.37
PLN02274		505	inosine-5'-monophosphate dehydrogenase	91.21
TIGR00737		319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	91.2
cd06556		240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	90.96
PLN02489		335	homocysteine S-methyltransferase	90.91
PRK09485		304	mmuM homocysteine methyltransferase; Provisional	90.87
PRK15063		428	isocitrate lyase; Provisional	90.86
cd04722		200	TIM_phosphate_binding TIM barrel proteins share a	90.65
cd02940		299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	90.6
TIGR00612		346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	90.32
PF03437		254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	90.19
cd04738		327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	90.01
PLN02417		280	dihydrodipicolinate synthase	89.95
PRK03170		292	dihydrodipicolinate synthase; Provisional	89.71
PRK01130		221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	89.68
PRK07565		334	dihydroorotate dehydrogenase 2; Reviewed	89.62
cd00953		279	KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas	89.15
PLN02746		347	hydroxymethylglutaryl-CoA lyase	89.07
TIGR02082		1178	metH 5-methyltetrahydrofolate--homocysteine methyl	89.06
COG0826		347	Collagenase and related proteases [Posttranslation	89.0
PLN02424		332	ketopantoate hydroxymethyltransferase	88.74
TIGR00262		256	trpA tryptophan synthase, alpha subunit. Tryptopha	88.53
cd04732		234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	88.48
PRK12677		384	xylose isomerase; Provisional	88.3
TIGR00007		230	phosphoribosylformimino-5-aminoimidazole carboxami	88.17
cd04729		219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	88.15
PRK08673		335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	88.06
cd04740		296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	88.05
cd00377		243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	87.96
PRK09490		1229	metH B12-dependent methionine synthase; Provisiona	87.84
PRK02506		310	dihydroorotate dehydrogenase 1A; Reviewed	87.8
cd06557		254	KPHMT-like Ketopantoate hydroxymethyltransferase (	87.73
PF01729		169	QRPTase_C: Quinolinate phosphoribosyl transferase,	87.68
PRK02412		253	aroD 3-dehydroquinate dehydratase; Provisional	87.65
PF00490		324	ALAD: Delta-aminolevulinic acid dehydratase; Inter	87.55
smart00633		254	Glyco_10 Glycosyl hydrolase family 10.	87.53
PRK07259		301	dihydroorotate dehydrogenase 1B; Reviewed	87.36
PF13714		238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	87.24
cd06556		240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	87.07
TIGR01463		340	mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi	87.04
PRK13587		234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	86.96
PRK10415		321	tRNA-dihydrouridine synthase B; Provisional	86.95
TIGR00742		318	yjbN tRNA dihydrouridine synthase A. Members of th	86.7
COG2224		433	AceA Isocitrate lyase [Energy production and conve	86.55
PRK05567		486	inosine 5'-monophosphate dehydrogenase; Reviewed	86.53
cd00381		325	IMPDH IMPDH: The catalytic domain of the inosine m	86.38
TIGR02635		378	RhaI_grampos L-rhamnose isomerase, Streptomyces su	86.37
COG5016		472	Pyruvate/oxaloacetate carboxyltransferase [Energy	86.3
PRK10550		312	tRNA-dihydrouridine synthase C; Provisional	86.2
cd00958		235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	86.2
PRK13523		337	NADPH dehydrogenase NamA; Provisional	85.93
cd07937		275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	85.9
PRK00366		360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	85.89
PRK07259		301	dihydroorotate dehydrogenase 1B; Reviewed	85.79
PRK13397		250	3-deoxy-7-phosphoheptulonate synthase; Provisional	85.65
PRK13384		322	delta-aminolevulinic acid dehydratase; Provisional	85.55
PRK07534		336	methionine synthase I; Validated	85.44
cd02801		231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	85.26
PF02574		305	S-methyl_trans: Homocysteine S-methyltransferase;	85.11
TIGR02990		239	ectoine_eutA ectoine utilization protein EutA. Mem	84.81
PRK07896		289	nicotinate-nucleotide pyrophosphorylase; Provision	84.67
PLN02591		250	tryptophan synthase	84.6
PF01487		224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	84.21
PRK05848		273	nicotinate-nucleotide pyrophosphorylase; Provision	84.05
cd07938		274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	83.89
COG0821		361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	83.54
COG5309		305	Exo-beta-1,3-glucanase [Carbohydrate transport and	83.52
COG2513		289	PrpB PEP phosphonomutase and related enzymes [Carb	83.45
PRK13125		244	trpA tryptophan synthase subunit alpha; Provisiona	83.1
PRK00748		233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	82.74
PF00682		237	HMGL-like: HMGL-like of this family is not conserv	82.69
PRK12581		468	oxaloacetate decarboxylase; Provisional	82.65
PLN02617		538	imidazole glycerol phosphate synthase hisHF	82.48
COG1038		1149	PycA Pyruvate carboxylase [Energy production and c	82.46
TIGR01496		257	DHPS dihydropteroate synthase. This model represen	82.34
cd04740		296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	82.07
cd04739		325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	81.89
cd07943		263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	81.79
PRK12581		468	oxaloacetate decarboxylase; Provisional	81.49
PF00478		352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	81.39
PRK08385		278	nicotinate-nucleotide pyrophosphorylase; Provision	81.36
cd00945		201	Aldolase_Class_I Class I aldolases. The class I al	81.31
COG0113		330	HemB Delta-aminolevulinic acid dehydratase [Coenzy	81.25
cd07947		279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	80.99
PRK14042		596	pyruvate carboxylase subunit B; Provisional	80.85
PRK07428		288	nicotinate-nucleotide pyrophosphorylase; Provision	80.53
PRK02048		611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	80.03
TIGR01235		1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	80.03

>PLN02489 homocysteine S-methyltransferase	Back alignment and domain information

Probab=100.00  E-value=1.9e-74  Score=551.14  Aligned_cols=307  Identities=70%  Similarity=1.147  Sum_probs=273.5

Q ss_pred             CcchHHHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHh
Q 021144            7 GTTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEA   86 (317)
Q Consensus         7 ~~~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~   86 (317)
                      .|+..|+++|++.++++||||||||+|+++|++.++++||+.+|+++||+|+++|++|++||||||+|||||+|+.+|.+
T Consensus         7 ~~~~~~~~~l~~~~~~lilDGgmGT~Le~~g~~~~~~lws~~~ll~~Pe~V~~vH~~yl~AGAdvI~TnTy~a~~~~l~~   86 (335)
T PLN02489          7 QMSSLLEDLLRQAGGCAVIDGGFATELERHGADLNDPLWSAKCLITSPHLIRKVHLDYLEAGADIIITASYQATIQGFES   86 (335)
T ss_pred             hhhHHHHHHHHhcCCEEEEEChHHHHHHhCCCCCCCCccchhhhcCCHHHHHHHHHHHHHhCCCEEEecccccCHHHHHH
Confidence            47888999998555699999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHH
Q 021144           87 KGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETL  166 (317)
Q Consensus        87 ~g~~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el  166 (317)
                      +|++.+++++++++||+|||+|++++..+.....+. +......+++++|||||||||+++.+|+||+|+|++.++++++
T Consensus        87 ~g~~~~~~~~l~~~av~lA~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~VaGsiGP~g~~l~~g~ey~g~y~~~~~~~e~  165 (335)
T PLN02489         87 RGLSREESETLLRKSVEIACEARDIFWDKCQKGSTS-RPGRELSYRPILVAASIGSYGAYLADGSEYSGDYGPSVTLEKL  165 (335)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhhhccccccc-ccccccCCCCcEEEEEcCCccccccCCcccCCCCccCCCHHHH
Confidence            999888899999999999999998764321000000 0001112357899999999999999999999999977899999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEE
Q 021144          167 KEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAV  246 (317)
Q Consensus       167 ~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~ai  246 (317)
                      +++|++|++.|+++|||+|+|||||++.|++++++++++.+.++|+|+||+|+++++|.+|+++.+++..+++..++++|
T Consensus       166 ~~~~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~~~~~~l~~G~~~~~~~~~~~~~~~~~~i  245 (335)
T PLN02489        166 KDFHRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNSKDGVNVVSGDSLLECASIADSCKKVVAV  245 (335)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEeCCCCccCCCCcHHHHHHHHHhcCCceEE
Confidence            99999999999999999999999999999999999999876569999999999999999999999999998765578999


Q ss_pred             EEcCCChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144          247 GINCTSPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFF  315 (317)
Q Consensus       247 GvNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~  315 (317)
                      |+||++|+.+.++|++++...+.||++|||+|++||...+.|...++.+|++|++++++|++.|. +||
T Consensus       246 GiNC~~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga-~iI  313 (335)
T PLN02489        246 GINCTPPRFIHGLILSIRKVTSKPIVVYPNSGETYDGEAKEWVESTGVSDEDFVSYVNKWRDAGA-SLI  313 (335)
T ss_pred             EecCCCHHHHHHHHHHHHhhcCCcEEEECCCCCCCCCccCcccCCCCCCHHHHHHHHHHHHHCCC-cEE
Confidence            99999999999999999998889999999999999998899986677789999999999999984 443

>PRK09485 mmuM homocysteine methyltransferase; Provisional	Back alignment and domain information

>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG1579 consensus Homocysteine S-methyltransferase [Amino acid transport and metabolism]	Back alignment and domain information

>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2	Back alignment and domain information

>PRK07534 methionine synthase I; Validated	Back alignment and domain information

>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]	Back alignment and domain information

>PRK09490 metH B12-dependent methionine synthase; Provisional	Back alignment and domain information

>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed	Back alignment and domain information

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase	Back alignment and domain information

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway	Back alignment and domain information

>TIGR00683 nanA N-acetylneuraminate lyase	Back alignment and domain information

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	Back alignment and domain information

>cd00408 DHDPS-like Dihydrodipicolinate synthase family	Back alignment and domain information

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	Back alignment and domain information

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional	Back alignment and domain information

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase	Back alignment and domain information

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants	Back alignment and domain information

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)	Back alignment and domain information

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis	Back alignment and domain information

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein	Back alignment and domain information

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)	Back alignment and domain information

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase	Back alignment and domain information

>TIGR02317 prpB methylisocitrate lyase	Back alignment and domain information

>PRK11320 prpB 2-methylisocitrate lyase; Provisional	Back alignment and domain information

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases	Back alignment and domain information

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional	Back alignment and domain information

>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase	Back alignment and domain information

>TIGR00674 dapA dihydrodipicolinate synthase	Back alignment and domain information

>PRK04147 N-acetylneuraminate lyase; Provisional	Back alignment and domain information

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed	Back alignment and domain information

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional	Back alignment and domain information

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase	Back alignment and domain information

>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed	Back alignment and domain information

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated	Back alignment and domain information

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase	Back alignment and domain information

>PLN02274 inosine-5'-monophosphate dehydrogenase	Back alignment and domain information

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family	Back alignment and domain information

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds	Back alignment and domain information

>PLN02489 homocysteine S-methyltransferase	Back alignment and domain information

>PRK09485 mmuM homocysteine methyltransferase; Provisional	Back alignment and domain information

>PRK15063 isocitrate lyase; Provisional	Back alignment and domain information

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure	Back alignment and domain information

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain	Back alignment and domain information

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase	Back alignment and domain information

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane	Back alignment and domain information

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2	Back alignment and domain information

>PLN02417 dihydrodipicolinate synthase	Back alignment and domain information

>PRK03170 dihydrodipicolinate synthase; Provisional	Back alignment and domain information

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional	Back alignment and domain information

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed	Back alignment and domain information

>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea	Back alignment and domain information

>PLN02746 hydroxymethylglutaryl-CoA lyase	Back alignment and domain information

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase	Back alignment and domain information

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	Back alignment and domain information

>PLN02424 ketopantoate hydroxymethyltransferase	Back alignment and domain information

>TIGR00262 trpA tryptophan synthase, alpha subunit	Back alignment and domain information

>cd04732 HisA HisA	Back alignment and domain information

>PRK12677 xylose isomerase; Provisional	Back alignment and domain information

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	Back alignment and domain information

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate	Back alignment and domain information

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed	Back alignment and domain information

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain	Back alignment and domain information

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage	Back alignment and domain information

>PRK09490 metH B12-dependent methionine synthase; Provisional	Back alignment and domain information

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed	Back alignment and domain information

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway	Back alignment and domain information

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2	Back alignment and domain information

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional	Back alignment and domain information

>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []	Back alignment and domain information

>smart00633 Glyco_10 Glycosyl hydrolase family 10	Back alignment and domain information

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed	Back alignment and domain information

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B	Back alignment and domain information

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds	Back alignment and domain information

>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family	Back alignment and domain information

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	Back alignment and domain information

>PRK10415 tRNA-dihydrouridine synthase B; Provisional	Back alignment and domain information

>TIGR00742 yjbN tRNA dihydrouridine synthase A	Back alignment and domain information

>COG2224 AceA Isocitrate lyase [Energy production and conversion]	Back alignment and domain information

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed	Back alignment and domain information

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase	Back alignment and domain information

>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype	Back alignment and domain information

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]	Back alignment and domain information

>PRK10550 tRNA-dihydrouridine synthase C; Provisional	Back alignment and domain information

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea	Back alignment and domain information

>PRK13523 NADPH dehydrogenase NamA; Provisional	Back alignment and domain information

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain	Back alignment and domain information

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed	Back alignment and domain information

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed	Back alignment and domain information

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional	Back alignment and domain information

>PRK13384 delta-aminolevulinic acid dehydratase; Provisional	Back alignment and domain information

>PRK07534 methionine synthase I; Validated	Back alignment and domain information

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain	Back alignment and domain information

>PF02574 S-methyl_trans: Homocysteine S-methyltransferase; InterPro: IPR003726 S-methylmethionine: homocysteine methyltransferase 2	Back alignment and domain information

>TIGR02990 ectoine_eutA ectoine utilization protein EutA	Back alignment and domain information

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PLN02591 tryptophan synthase	Back alignment and domain information

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4	Back alignment and domain information

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain	Back alignment and domain information

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]	Back alignment and domain information

>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]	Back alignment and domain information

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]	Back alignment and domain information

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional	Back alignment and domain information

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated	Back alignment and domain information

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members	Back alignment and domain information

>PRK12581 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PLN02617 imidazole glycerol phosphate synthase hisHF	Back alignment and domain information

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]	Back alignment and domain information

>TIGR01496 DHPS dihydropteroate synthase	Back alignment and domain information

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain	Back alignment and domain information

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins	Back alignment and domain information

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain	Back alignment and domain information

>PRK12581 oxaloacetate decarboxylase; Provisional	Back alignment and domain information

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase	Back alignment and domain information

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>cd00945 Aldolase_Class_I Class I aldolases	Back alignment and domain information

>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]	Back alignment and domain information

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain	Back alignment and domain information

>PRK14042 pyruvate carboxylase subunit B; Provisional	Back alignment and domain information

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional	Back alignment and domain information

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	Back alignment and domain information

>TIGR01235 pyruv_carbox pyruvate carboxylase	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		317
1q7m_A		566	Cobalamin-Dependent Methionine Synthase (Meth) From		3e-07
1q85_A		566	Cobalamin-Dependent Methionine Synthase (1-566) Fro		1e-06
1umy_A		407	Bhmt From Rat Liver Length = 407		2e-05
1lt7_A		406	Oxidized Homo Sapiens Betaine-Homocysteine S-Methyl		4e-05

>pdb|1Q7M|A Chain A, Cobalamin-Dependent Methionine Synthase (Meth) From Thermotoga Maritima (Oxidized, Monoclinic) Length = 566

Back alignment and structure

Iteration: 1

Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 68/295 (23%), Positives = 118/295 (40%), Gaps = 48/295 (16%) Query: 24 VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83 ++DG + TE ++G D + + +P +V KVH Y+++G+++I+T ++ AT Sbjct: 17 LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72 Query: 84 FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143 G ++ + ++R +V IA R ++ LV +G Sbjct: 73 LRKHGLE-DKLDPIVRNAVRIA----------------------RRAAGEKLVFGDIGPT 109 Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNXXXXXXXXXXX 203 G E G + E E R V I+ G D I FET + Sbjct: 110 G-------ELPYPLGSTL-FEEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAA 161 Query: 204 XXXG--ITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCT-SPRFIHGLI 260 + + A +F+ K ++G A D + + A+GINC+ P I + Sbjct: 162 REVSRDVFLIAHMTFDEKG--RSLTGTDPANFAITFDELD-IDALGINCSLGPEEILPIF 218 Query: 261 LSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPL------ELILNPFASC 309 + + T K +++ PN+G+ E K V H F + EL +N F C Sbjct: 219 QELSQYTDKFLVVEPNAGKPI-VENGKTVYPLKPHDFAVHIDSYYELGVNIFGGC 272

PyMOL of 1q7m

>pdb|1Q85|A Chain A, Cobalamin-Dependent Methionine Synthase (1-566) From Thermotoga Maritima (Cd2+ Complex, Se-Met) Length = 566

Back alignment and structure

>pdb|1UMY|A Chain A, Bhmt From Rat Liver Length = 407

Back alignment and structure

>pdb|1LT7|A Chain A, Oxidized Homo Sapiens Betaine-Homocysteine S-Methyltransferase In Complex With Four Sm(Iii) Ions Length = 406

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		317
1lt8_A		406	Betaine-homocysteine methyltransferase; homocystei	6e-37
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	9e-22
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06

>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A Length = 406	Back alignment and structure

 Score =  135 bits (342), Expect = 6e-37
 Identities = 58/307 (18%), Positives = 106/307 (34%), Gaps = 50/307 (16%)

Query: 7   GTTSFMTDFLQKCGGYSVV--DGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDY 64
           G        L++     +V  DGGF   LE+ G     P W+ +  V  P  VR++H ++
Sbjct: 5   GGKKAKKGILERLNAGEIVIGDGGFVFALEKRGYVKAGP-WTPEAAVEHPEAVRQLHREF 63

Query: 65  LDAGANIIITASYQATIQGFEAKGFSTEE---AEALLRRSVEIACEAREIYYDRCMKDSW 121
           L AG+N++ T ++ A+    E +G    E    + +   + +IA +  +           
Sbjct: 64  LRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVAD----------- 112

Query: 122 DFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSG 181
                        LVA  V    +YL+             S   +K+   +++ +     
Sbjct: 113 ---------EGDALVAGGVSQTPSYLSA-----------KSETEVKKVFLQQLEVFMKKN 152

Query: 182 ADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCE 241
            D +  E   +  EA    E L   G  + A  +         + G    E A       
Sbjct: 153 VDFLIAEYFEHVEEAVWAVETLIASGKPVAATMAI---GPEGDLHGVPPGEAAVRLVKA- 208

Query: 242 QVVAVGINC-TSPRFIHGLILSVRKVT-----SKPVIIYPNSGETYNAELKKWVVSFSLH 295
               +G+NC   P      +  +++          ++  P +  T +A  + +     L 
Sbjct: 209 GASIIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGF---IDLP 265

Query: 296 FFPLELI 302
            FP  L 
Sbjct: 266 EFPFGLE 272

PyMOL of 1lt8

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A Length = 566	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		317
1lt8_A		406	Betaine-homocysteine methyltransferase; homocystei	100.0
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	100.0
3vnd_A		267	TSA, tryptophan synthase alpha chain; psychrophili	96.12
3si9_A		315	DHDPS, dihydrodipicolinate synthase; structural ge	95.75
3fkr_A		309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	95.52
3m5v_A		301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	95.41
2vc6_A		292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	95.4
1xky_A		301	Dihydrodipicolinate synthase; TIM barrel, , lysine	95.32
3nav_A		271	Tryptophan synthase alpha chain; alpha subunit, st	95.3
3cpr_A		304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	95.26
2ojp_A		292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	95.2
2ehh_A		294	DHDPS, dihydrodipicolinate synthase; structural ge	95.17
2yxg_A		289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	94.97
1o5k_A		306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	94.91
2r8w_A		332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	94.77
3qfe_A		318	Putative dihydrodipicolinate synthase family PROT;	94.71
3tak_A		291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	94.67
3flu_A		297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	94.64
3l21_A		304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	94.64
3na8_A		315	Putative dihydrodipicolinate synthetase; lyase; HE	94.61
3qze_A		314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	94.61
2rfg_A		297	Dihydrodipicolinate synthase; beta barrel, amino-a	94.61
3d0c_A		314	Dihydrodipicolinate synthase; lysine biosynthesis,	94.51
1f6k_A		293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	94.49
2v9d_A		343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	94.46
3e96_A		316	Dihydrodipicolinate synthase; structural genomics,	94.44
3s5o_A		307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	94.38
3dz1_A		313	Dihydrodipicolinate synthase; lysine biosynthesis,	94.36
2wkj_A		303	N-acetylneuraminate lyase; directed evolution, sia	94.33
3a5f_A		291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	94.31
2nuw_A		288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	94.22
3b4u_A		294	Dihydrodipicolinate synthase; structural genomics,	94.22
2r91_A		286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	94.18
3daq_A		292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	94.14
2qjg_A		273	Putative aldolase MJ0400; beta-alpha barrel, lyase	94.11
3eb2_A		300	Putative dihydrodipicolinate synthetase; lysine bi	93.93
1w3i_A		293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	93.76
1lt8_A		406	Betaine-homocysteine methyltransferase; homocystei	93.68
1q7z_A		566	5-methyltetrahydrofolate S-homocysteine methyltran	93.67
3lye_A		307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	93.38
2hmc_A		344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	93.35
3h5d_A		311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	92.82
2cw6_A		298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	92.34
1ydo_A		307	HMG-COA lyase; TIM-barrel protein, structural geno	92.12
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	91.99
1z41_A		338	YQJM, probable NADH-dependent flavin oxidoreductas	91.81
3noy_A		366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	91.38
4dpp_A		360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	90.9
1f76_A		336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	90.83
2e6f_A		314	Dihydroorotate dehydrogenase; chagas disease, pyri	90.34
1jub_A		311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	89.91
3lg3_A		435	Isocitrate lyase; conserved, CD, proteomics eviden	89.55
1zlp_A		318	PSR132, petal death protein; TIM-barrel, helix swa	89.47
3i4e_A		439	Isocitrate lyase; structural genomics, seattle str	89.46
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	89.44
3fa4_A		302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	89.29
4fo4_A		366	Inosine 5'-monophosphate dehydrogenase; structural	89.26
1xg4_A		295	Probable methylisocitrate lyase; 2-methylisocitrat	89.12
1f8m_A		429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	89.07
3igs_A		232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	88.91
4g9p_A		406	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	88.81
1o66_A		275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	88.81
3eoo_A		298	Methylisocitrate lyase; seattle structural genomic	88.7
4ay7_A		348	Methylcobalamin\: coenzyme M methyltransferase; TI	88.64
3eol_A		433	Isocitrate lyase; seattle structural center for in	88.51
3ble_A		337	Citramalate synthase from leptospira interrogans;	88.43
3ewb_X		293	2-isopropylmalate synthase; LEUA, structural genom	88.34
1s2w_A		295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	88.04
3q58_A		229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	87.82
1ydn_A		295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	87.81
3ih1_A		305	Methylisocitrate lyase; alpha-beta structure, TIM-	87.72
1to3_A		304	Putative aldolase YIHT; beta-alpha barrel, structu	87.72
3f4w_A		211	Putative hexulose 6 phosphate synthase; humps, mal	86.95
3rmj_A		370	2-isopropylmalate synthase; LEUA, truncation, neis	86.61
3o1n_A		276	3-dehydroquinate dehydratase; structural genomics,	86.59
2nx9_A		464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	86.58
2hjp_A		290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	86.24
4ef8_A		354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	85.95
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	85.54
2ze3_A		275	DFA0005; organic waste LEFT-OVER decomposition, al	85.49
1m3u_A		264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	85.43
1vzw_A		244	Phosphoribosyl isomerase A; histidine biosynthesis	85.41
2ekc_A		262	AQ_1548, tryptophan synthase alpha chain; structur	85.0
3qja_A		272	IGPS, indole-3-glycerol phosphate synthase; struct	84.69
3hgj_A		349	Chromate reductase; TIM barrel, oxidoreductase; HE	84.57
3usb_A		511	Inosine-5'-monophosphate dehydrogenase; structural	84.54
1sfl_A		238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	83.46
3b8i_A		287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	83.34
4fo4_A		366	Inosine 5'-monophosphate dehydrogenase; structural	83.07
2nx9_A		464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	82.81
1vhn_A		318	Putative flavin oxidoreducatase; structural genomi	82.51
1z41_A		338	YQJM, probable NADH-dependent flavin oxidoreductas	82.43
1oy0_A		281	Ketopantoate hydroxymethyltransferase; domain swap	82.35
1vs1_A		276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	82.19
3b0p_A		350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	82.18
3eol_A		433	Isocitrate lyase; seattle structural center for in	81.82
3lg3_A		435	Isocitrate lyase; conserved, CD, proteomics eviden	81.69
1rqb_A		539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	81.61
2ojp_A		292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	81.39
4h3d_A		258	3-dehydroquinate dehydratase; structural genomics,	81.37
3i4e_A		439	Isocitrate lyase; structural genomics, seattle str	81.15
2ftp_A		302	Hydroxymethylglutaryl-COA lyase; structural genomi	81.06
4fxs_A		496	Inosine-5'-monophosphate dehydrogenase; structural	80.8
2pcq_A		283	Putative dihydrodipicolinate synthase; lyase, lysi	80.77
4avf_A		490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	80.75
3oix_A		345	Putative dihydroorotate dehydrogenase; dihydrooro	80.55
4h3d_A		258	3-dehydroquinate dehydratase; structural genomics,	80.38
1thf_D		253	HISF protein; thermophIle, TIM-barrel, histidine b	80.36
1eep_A		404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	80.2

>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A	Back alignment and structure

Probab=100.00  E-value=1.5e-62  Score=477.60  Aligned_cols=267  Identities=20%  Similarity=0.261  Sum_probs=228.1

Q ss_pred             cchHHHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhC
Q 021144            8 TTSFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAK   87 (317)
Q Consensus         8 ~~~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~   87 (317)
                      |++.|.+.|++ ++++||||||||+|+++|++.. ++|++++++++||+|++||++|++||||||+|||||+|+.+|.++
T Consensus         9 ~~~~l~~~L~~-~~ilIlDGgmGT~L~~~G~~~~-~~ws~~l~l~~Pe~V~~iH~~Yl~AGAdII~TNTf~A~~~~l~~~   86 (406)
T 1lt8_A            9 AKKGILERLNA-GEIVIGDGGFVFALEKRGYVKA-GPWTPEAAVEHPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENR   86 (406)
T ss_dssp             --CCHHHHHHT-TCCEECCCCHHHHHHHHTSSCT-TTCCCTHHHHCHHHHHHHHHHHHHTTCSEEECSCTTCSSCC----
T ss_pred             chHHHHHHHhc-CCEEEEeCccchHHHHCCCCCC-cccchHhhccCHHHHHHHHHHHHHhCccceeccccccCHHHHHhc
Confidence            45668999982 3499999999999999998753 589999999999999999999999999999999999999999999


Q ss_pred             CCCH---HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHH
Q 021144           88 GFST---EEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLE  164 (317)
Q Consensus        88 g~~~---~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~  164 (317)
                      |++.   +++++||++||+|||+|+++                    .+++|||||||+|+++.           .++++
T Consensus        87 G~~~~~~~~~~eln~~Av~LAreAa~~--------------------~~~~VAGsIGP~g~~l~-----------~~s~e  135 (406)
T 1lt8_A           87 GNYVLEKISGQEVNEAAADIARQVADE--------------------GDALVAGGVSQTPSYLS-----------AKSET  135 (406)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTT--------------------TTCEEEEEECCCHHHHT-----------TCHHH
T ss_pred             CCccchhHHHHHHHHHHHHHHHHHHhc--------------------CCCEEEEEcCCcccccC-----------CCCHH
Confidence            9752   45789999999999999842                    25899999999998652           27999


Q ss_pred             HHHHHHHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCce
Q 021144          165 TLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVV  244 (317)
Q Consensus       165 el~~~h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~  244 (317)
                      +++++|++|++.|+++|||+|+|||||++.|++++++++++.+  +|||+||+|.++++ ++|+++++++..+.. .+++
T Consensus       136 el~~~~~eqi~~L~~~GvDlll~ETi~~~~Eakaa~~a~~~~~--lPv~iS~T~~~~G~-l~G~~~~~~~~~l~~-~~~~  211 (406)
T 1lt8_A          136 EVKKVFLQQLEVFMKKNVDFLIAEYFEHVEEAVWAVETLIASG--KPVAATMAIGPEGD-LHGVPPGEAAVRLVK-AGAS  211 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCSEEEECCCSCHHHHHHHHHHHGGGT--SCEEEEECCBTTBC-TTCCCHHHHHHHHHT-TTCS
T ss_pred             HHHHHHHHHHHHHhhCCCCEEEEcccCCHHHHHHHHHHHHHhC--CcEEEEEEECCCCC-cCCCcHHHHHHHhhc-CCCC
Confidence            9999999999999999999999999999999999999999865  99999999988888 899999999998876 4799


Q ss_pred             EEEEcCC-ChhhhHHHHHHHHhhC-----CCcEEEEeCCCCccccccccccc----cCCCChh-----hHHHHHHHHHHc
Q 021144          245 AVGINCT-SPRFIHGLILSVRKVT-----SKPVIIYPNSGETYNAELKKWVV----SFSLHFF-----PLELILNPFASC  309 (317)
Q Consensus       245 aiGvNC~-~p~~~~~~l~~l~~~~-----~~pl~vyPNaG~~~d~~~~~w~~----~~~~~~~-----~~~~~~~~w~~~  309 (317)
                      +|||||+ +|+.|.++|+.+++..     +.||+||||+|..||..++.|..    +++.+|+     +|.+++++|.+.
T Consensus       212 avGvNC~~gP~~~~~~l~~l~~~~~~~g~~~pl~vyPNag~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~w~~~  291 (406)
T 1lt8_A          212 IIGVNCHFDPTISLKTVKLMKEGLEAAQLKAHLMSQPLAYHTPDANKQGFIDLPEFPFGLEPRVATRWDIQKYAREAYNL  291 (406)
T ss_dssp             EEEEESSSCHHHHHHHHHHHHHHHHTTTCCCEEEEECCSBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhhhhcCCCccEEEecCCCCCCcCCcccccCCccccccCCHHHHHHHHHHHHHHHHHhC
Confidence            9999997 8999999999998764     78999999999988877778864    2345565     599999999988


Q ss_pred             cc
Q 021144          310 RL  311 (317)
Q Consensus       310 ~~  311 (317)
                      |+
T Consensus       292 Ga  293 (406)
T 1lt8_A          292 GV  293 (406)
T ss_dssp             TE
T ss_pred             CC
Confidence            74

PyMOL of 1lt8

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A	Back alignment and structure

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}	Back alignment and structure

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}	Back alignment and structure

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A	Back alignment and structure

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*	Back alignment and structure

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}	Back alignment and structure

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*	Back alignment and structure

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4	Back alignment and structure

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}	Back alignment and structure

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A	Back alignment and structure

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}	Back alignment and structure

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}	Back alignment and structure

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A	Back alignment and structure

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}	Back alignment and structure

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}	Back alignment and structure

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A	Back alignment and structure

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0	Back alignment and structure

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A	Back alignment and structure

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}	Back alignment and structure

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A	Back alignment and structure

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}	Back alignment and structure

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}	Back alignment and structure

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*	Back alignment and structure

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*	Back alignment and structure

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0	Back alignment and structure

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A	Back alignment and structure

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0	Back alignment and structure

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A	Back alignment and structure

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*	Back alignment and structure

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A	Back alignment and structure

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}	Back alignment and structure

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A	Back alignment and structure

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A	Back alignment and structure

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A	Back alignment and structure

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0	Back alignment and structure

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*	Back alignment and structure

>1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A	Back alignment and structure

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A	Back alignment and structure

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A	Back alignment and structure

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}	Back alignment and structure

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}	Back alignment and structure

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*	Back alignment and structure

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*	Back alignment and structure

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}	Back alignment and structure

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*	Back alignment and structure

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1	Back alignment and structure

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*	Back alignment and structure

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*	Back alignment and structure

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A	Back alignment and structure

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}	Back alignment and structure

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A	Back alignment and structure

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A	Back alignment and structure

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A	Back alignment and structure

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A	Back alignment and structure

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0	Back alignment and structure

>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A*	Back alignment and structure

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*	Back alignment and structure

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7	Back alignment and structure

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A	Back alignment and structure

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*	Back alignment and structure

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*	Back alignment and structure

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}	Back alignment and structure

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A	Back alignment and structure

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}	Back alignment and structure

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}	Back alignment and structure

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1	Back alignment and structure

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0	Back alignment and structure

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}	Back alignment and structure

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*	Back alignment and structure

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}	Back alignment and structure

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A	Back alignment and structure

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}	Back alignment and structure

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8	Back alignment and structure

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A	Back alignment and structure

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}	Back alignment and structure

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*	Back alignment and structure

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*	Back alignment and structure

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*	Back alignment and structure

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*	Back alignment and structure

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}	Back alignment and structure

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A	Back alignment and structure

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}	Back alignment and structure

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1	Back alignment and structure

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*	Back alignment and structure

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8	Back alignment and structure

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}	Back alignment and structure

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*	Back alignment and structure

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*	Back alignment and structure

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A	Back alignment and structure

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*	Back alignment and structure

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A	Back alignment and structure

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*	Back alignment and structure

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}	Back alignment and structure

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}	Back alignment and structure

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}	Back alignment and structure

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}	Back alignment and structure

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}	Back alignment and structure

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*	Back alignment and structure

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A	Back alignment and structure

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		317
d3bofa2		300	c.1.26.1 (A:1-300) Cobalamin-dependent methionine	3e-26
d1lt7a_		361	c.1.26.1 (A:) Betaine-homocysteine S-methyltransfe	7e-26

>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 300	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score =  103 bits (257), Expect = 3e-26
 Identities = 47/265 (17%), Positives = 86/265 (32%), Gaps = 35/265 (13%)

Query: 24  VVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQG 83
           ++DG + TE  ++G D        +  + +P +V KVH  Y+++G+++I+T ++ AT   
Sbjct: 17  LLDGAYGTEFMKYGYDD----LPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMK 72

Query: 84  FEAKGFSTEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSY 143
               G   +    +          A E      +  + +       +             
Sbjct: 73  LRKHGLEDKLDPIVRNAVRIARRAAGEKLVFGDIGPTGELPYPLGSTLF----------- 121

Query: 144 GAYLADGSEYSGDYGDAVSLETLKEFHRRRVLILANSGADLIAFETIPNKLEAKAYAELL 203
                               E   E  R  V I+   G D I FET  + LE KA     
Sbjct: 122 --------------------EEFYENFRETVEIMVEEGVDGIIFETFSDILELKAAVLAA 161

Query: 204 EEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGINCTSPRFIHGLILSV 263
            E    +         +    ++G      A   D  +           P  I  +   +
Sbjct: 162 REVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQEL 221

Query: 264 RKVTSKPVIIYPNSGETYNAELKKW 288
            + T K +++ PN+G+      K  
Sbjct: 222 SQYTDKFLVVEPNAGKPIVENGKTV 246

PyMOL of d3bofa2

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 361	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		317
d3bofa2		300	Cobalamin-dependent methionine synthase MetH, N-te	100.0
d1lt7a_		361	Betaine-homocysteine S-methyltransferase {Human (H	100.0
d1xkya1		292	Dihydrodipicolinate synthase {Bacillus anthracis [	95.12
d1xxxa1		296	Dihydrodipicolinate synthase {Mycobacterium tuberc	95.01
d1o5ka_		295	Dihydrodipicolinate synthase {Thermotoga maritima	94.02
d1o66a_		260	Ketopantoate hydroxymethyltransferase PanB {Neisse	93.61
d2a6na1		292	Dihydrodipicolinate synthase {Escherichia coli [Ta	92.8
d1m3ua_		262	Ketopantoate hydroxymethyltransferase PanB {Escher	91.88
d1igwa_		416	Isocitrate lyase {Escherichia coli [TaxId: 562]}	91.53
d3bofa2		300	Cobalamin-dependent methionine synthase MetH, N-te	91.11
d1w3ia_		293	2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus	90.96
d1f74a_		293	N-acetylneuraminate lyase {Haemophilus influenzae	90.8
d1hl2a_		295	N-acetylneuraminate lyase {Escherichia coli [TaxId	87.79
d1lt7a_		361	Betaine-homocysteine S-methyltransferase {Human (H	86.23
d1gqna_		252	Type I 3-dehydroquinate dehydratase {Salmonella ty	83.74
d1qopa_		267	Trp synthase alpha-subunit {Salmonella typhimurium	83.42
d2nu7b1		150	Succinyl-CoA synthetase, beta-chain, C-terminal do	83.34
d1s2wa_		275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	80.71

>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Cobalamin-dependent methionine synthase MetH, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=4.7e-58  Score=428.09  Aligned_cols=264  Identities=24%  Similarity=0.365  Sum_probs=233.5

Q ss_pred             hHHHHHhhccCCeEEEecchHHHHHHCCCCCCCccccccccCCChHHHHHHHHHHHHhhccccccccccccHHHHHhCCC
Q 021144           10 SFMTDFLQKCGGYSVVDGGFATELERHGADLNDPLWSAKCLVSSPHLVRKVHLDYLDAGANIIITASYQATIQGFEAKGF   89 (317)
Q Consensus        10 ~~l~~~l~~~~~~lilDGgmgT~L~~~G~~~~~~lws~~~ll~~Pe~V~~iH~~Yl~AGAdiI~TnTy~as~~~l~~~g~   89 (317)
                      ..|+++|+  ++++||||||||+|+++|++    +|++.+++++||+|+++|++|++||||||+|||||+++.+|.++|+
T Consensus         5 ~~~~~~l~--~~i~ilDGg~GteL~~~G~~----~~~~~~~~~~Pe~V~~iH~~yi~AGAdiI~TnTy~a~~~~l~~~g~   78 (300)
T d3bofa2           5 REVSKLLS--ERVLLLDGAYGTEFMKYGYD----DLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHGL   78 (300)
T ss_dssp             HHHHHHHH--HCCEECCCCSHHHHGGGTCC----SCGGGHHHHCHHHHHHHHHHHHTTTCSEEECSCTTCSHHHHGGGTC
T ss_pred             HHHHHHHc--CCeEEEECHHHHHHHHCCCC----CCChHHhhcCHHHHHHHHHHHHHhCCCEEeeCceeceeChhhcCCc
Confidence            45899998  67999999999999999974    6888888999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCeEEEEeeCCCcCccCCCCCCCCCCCCCCCHHHHHHH
Q 021144           90 STEEAEALLRRSVEIACEAREIYYDRCMKDSWDFTGSGRISSRPVLVAASVGSYGAYLADGSEYSGDYGDAVSLETLKEF  169 (317)
Q Consensus        90 ~~~~~~~l~~~av~lAr~A~~~~~~~~~~~~~~~~~~~~~~~~~~~VagsiGP~g~~l~~gseY~g~y~~~~s~~el~~~  169 (317)
                      + +++.++|++|+++|++|++                      +..|+||+||+|.+..       +++. .+.+++.++
T Consensus        79 ~-~~~~~~~~~Av~la~~a~~----------------------~~~~~g~i~~~g~~~~-------~~~~-~~~~~~~~~  127 (300)
T d3bofa2          79 E-DKLDPIVRNAVRIARRAAG----------------------EKLVFGDIGPTGELPY-------PLGS-TLFEEFYEN  127 (300)
T ss_dssp             G-GGHHHHHHHHHHHHHHHHT----------------------TSEEEEEECCCSCCBT-------TTSS-BCHHHHHHH
T ss_pred             h-HHHHHHHHHHHHHHHHHhh----------------------hccccceEeccccccC-------cccc-ccHHHHHHH
Confidence            7 5799999999999999973                      3579999999997542       2222 689999999


Q ss_pred             HHHHHHHHHhCCCCEEEeccCCCHHHHHHHHHHHHHhCCCccEEEEEEEcCCCcccCCCcHHHHHHHhhcCCCceEEEEc
Q 021144          170 HRRRVLILANSGADLIAFETIPNKLEAKAYAELLEEEGITIPAWFSFNSKDGINVVSGDSILECASIADSCEQVVAVGIN  249 (317)
Q Consensus       170 h~~qi~~l~~~gvD~l~~ET~p~~~Ea~a~~~~~~~~~~~~pv~iSf~~~~~~~l~~G~~l~~a~~~~~~~~~~~aiGvN  249 (317)
                      |++|++.|.++|||+|+|||||++.|++++++++++.+...|+++||++++++++.+|+++.+++..+.. .+++++|+|
T Consensus       128 ~~~~~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~~~~~s~~~~~~g~~~~G~~~~~~~~~~~~-~~~~~~~in  206 (300)
T d3bofa2         128 FRETVEIMVEEGVDGIIFETFSDILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFAITFDE-LDIDALGIN  206 (300)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEECCHHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTCCCHHHHHHHHHT-SSCSEEEEE
T ss_pred             HHHHHHHHHhcCcceeeeeeeecHHHHHHHHHhHHhhccccceEEEEEecCCCCcccccchhHHHhhhcc-cccchHhhc
Confidence            9999999999999999999999999999999999998755667778878888999999999999988875 589999999


Q ss_pred             CC-ChhhhHHHHHHHHhhCCCcEEEEeCCCCccccccccccccCCCChhhHHHHHHHHHHccccccc
Q 021144          250 CT-SPRFIHGLILSVRKVTSKPVIIYPNSGETYNAELKKWVVSFSLHFFPLELILNPFASCRLISFF  315 (317)
Q Consensus       250 C~-~p~~~~~~l~~l~~~~~~pl~vyPNaG~~~d~~~~~w~~~~~~~~~~~~~~~~~w~~~~~~~~~  315 (317)
                      |+ .|..+..+++.+...+++|+++|||+|.+++...+.|   ++.+|++|++++++|++.|. +|+
T Consensus       207 c~~~~~~~~~~~~~~~~~~~~~~~vypN~g~~~~~~~~~~---~~~~p~~f~~~~~~w~~~Ga-~iI  269 (300)
T d3bofa2         207 CSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTV---YPLKPHDFAVHIDSYYELGV-NIF  269 (300)
T ss_dssp             SSSCHHHHHHHHHHHHHTCCSEEEEECCSSSCEEETTEEE---CCCCHHHHHTTHHHHHHTTC-SEE
T ss_pred             ccccccchhhhhhhhhccccccccccCCCCCCEeCCCccc---CCCCHHHHHHHHHHHHHCCC-CEE
Confidence            98 6899999999999999999999999999876654444   45789999999999999993 444

PyMOL of d3bofa2

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}	Back information, alignment and structure

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d3bofa2 c.1.26.1 (A:1-300) Cobalamin-dependent methionine synthase MetH, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]}	Back information, alignment and structure

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}	Back information, alignment and structure

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}	Back information, alignment and structure

>d2nu7b1 c.23.4.1 (B:239-388) Succinyl-CoA synthetase, beta-chain, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}	Back information, alignment and structure