Citrus Sinensis ID: 021145

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHEEcccEEcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEccccccccccHHEEEEEEHHHHHHHHccccHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHccccc
Coil and Loop (DISEMBL)
MLPLVALTTQSASYVFThfemspeatgisskpYAVILSFLVSQyslygydsaahlteetkgadktgpiaiLSSIGIISIFGWALILALCFSIQDFsylydksnetagafvpaQILYDafhgryhnsTGAIILLIVIWGSfffgglsvtTSAARVVYALSrdkgipfssiwrqlhpkhkvpsnAVWLCAAICIIlglpilkvNVVFTAITSICtigwvggyavPIFARMVMAEQkfnagpfylgkasrpiCLIAFLWICYTCsvfllptfypiswdtfnyapvALGVGLGLIMLWWLLDArkwftgpvrnidnengkv
Flexible Loop (DISEMBL)
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKwftgpvrnidnengkv
Low Complexity Region (SEG)
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPiailssigiisiFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
Disordered region (IsUnstruct)
****VALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVR*********
Disordered Region (DISOPRED)
MLPL***TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT*************
Disordered Region (DISEMBL)
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
Disordered Region (DISPRO)
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPV**********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENGKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
B9EXZ6	520	Amino-acid permease BAT1	no	no	0.968	0.590	0.451	4e-60
Q9ZU50	516	Amino-acid permease BAT1	yes	no	0.968	0.594	0.412	7e-60
O60113	542	Uncharacterized amino-aci	yes	no	0.924	0.540	0.306	1e-30
Q9C0Z0	543	Uncharacterized amino-aci	no	no	0.908	0.530	0.306	1e-27
Q10087	550	Uncharacterized amino-aci	no	no	0.911	0.525	0.315	1e-25
O59942	541	Amino-acid permease 2 OS=	N/A	no	0.892	0.523	0.276	2e-23
O59813	554	Uncharacterized amino-aci	no	no	0.813	0.465	0.305	3e-23
Q09887	544	Uncharacterized amino-aci	no	no	0.873	0.509	0.276	1e-22
P32837	571	GABA-specific permease OS	yes	no	0.735	0.408	0.317	2e-22
P19807	563	Choline transport protein	no	no	0.927	0.522	0.254	8e-22

>sp|B9EXZ6|BAT1_ORYSJ Amino-acid permease BAT1 homolog OS=Oryza sativa subsp. japonica GN=BAT1 PE=2 SV=1

 Score =  231 bits (590), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 140/310 (45%), Positives = 192/310 (61%), Gaps = 3/310 (0%)

Query: 2   LPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKG 61
           +P VA    SA +VFTHF     A GI S  Y  +L  L+SQY+L GYD++AH+TEETK 
Sbjct: 213 VPTVATERASAKFVFTHFNTENNA-GIHSNFYIFVLGLLMSQYTLTGYDASAHMTEETKN 271

Query: 62  ADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHG 121
           AD+ GPI I+S+IGI  I GW  IL + F+++D  YL +  N+ AG +  A++ Y AF  
Sbjct: 272 ADRNGPIGIISAIGISIIVGWGYILGITFAVKDIPYLLNPEND-AGGYAIAEVFYLAFKS 330

Query: 122 RYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS 181
           RY +  G II L ++  + +F G+S  TS +R+ YA SRD  +P SS+W +++ KH+VP 
Sbjct: 331 RYGSGIGGIICLGIVAVAIYFCGMSSVTSNSRMAYAFSRDGAMPLSSVWHKVN-KHEVPI 389

Query: 182 NAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFY 241
           NAVWL A I + + LP L   V F A+ SI TIG    YA+PI  R+ +A + F  GPF 
Sbjct: 390 NAVWLSALISLCMALPSLGSLVAFQAMVSIATIGLYVAYALPILFRVTLARKHFVPGPFN 449

Query: 242 LGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK 301
           LG+    +   A LW+     +F LP  YP++ DT NY PVA+G    L++  WLL AR 
Sbjct: 450 LGRCGVAVGWAAVLWVATITVLFSLPVSYPVTKDTLNYTPVAVGGLFLLVLSSWLLSARH 509

Query: 302 WFTGPVRNID 311
           WF GP+ N+D
Sbjct: 510 WFKGPITNLD 519

May be involved in the transport of amino acids.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZU50|BAT1_ARATH Amino-acid permease BAT1 OS=Arabidopsis thaliana GN=BAT1 PE=2 SV=2

 Score =  231 bits (588), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 128/310 (41%), Positives = 187/310 (60%), Gaps = 3/310 (0%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           ++PLV+    +  +VFT+F  +    GI+S  Y  +L  L+SQY++ GYD++AH+TEET 
Sbjct: 208 LIPLVSTERATTKFVFTNFN-TDNGLGITSYAYIFVLGLLMSQYTITGYDASAHMTEETV 266

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
            ADK GP  I+S+IGI  +FGW  IL + +++ D   L  ++N + G +  A+I Y AF 
Sbjct: 267 DADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSGG-YAIAEIFYLAFK 325

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
            R+ + TG I+ L V+  + FF G+S  TS +R+ YA SRD  +P S +W +++ + +VP
Sbjct: 326 NRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMSPLWHKVNSR-EVP 384

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
            NAVWL A I   + L  L   V F A+ SI TIG    YA+PI  R+ +A   F  GPF
Sbjct: 385 INAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLARNTFVPGPF 444

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
            LGK    +  +A LW+     +F LP  YPI+ +T NY PVA+   + + + +WL  AR
Sbjct: 445 SLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVAITLSYWLFSAR 504

Query: 301 KWFTGPVRNI 310
            WFTGP+ NI
Sbjct: 505 HWFTGPISNI 514

May play a role in primary carbon metabolism and plant growth, by mediating the transport of GABA from the cytosol to mitochondria. When expressed in a heterologous system (yeast), imports Arg and Ala across the plasma membrane and exports Lys and Glu, but does not transport proline.

Arabidopsis thaliana (taxid: 3702)

>sp|O60113|YG64_SCHPO Uncharacterized amino-acid permease C15C4.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC15C4.04c PE=3 SV=1

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 147/307 (47%), Gaps = 14/307 (4%)

Query: 10  QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIA 69
            +  YVFT  + S   +G     ++ +  FL   + +  YD+ AH+ EE + A    P A
Sbjct: 241 NTGKYVFTDVQAS---SGWHPIGFSFLFGFLSVAWCMTDYDATAHIAEEIENAAVRAPNA 297

Query: 70  ILSSIGIISIFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTG 128
           I  ++ I  + GW   + L F++  D   L    N   G  V AQI Y+   G+  +   
Sbjct: 298 IALALSITYVLGWVFNIVLAFTMGTDLDSLI---NSELGQPV-AQIFYNVL-GKKGSMAF 352

Query: 129 AIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCA 188
            I+  I+I     F G++   + AR ++A SRD+ +PFS  W +++     P  AVWL  
Sbjct: 353 TILSFIII----NFTGITAMQANARTIWAFSRDQALPFSRYWYKINKTTTTPVIAVWLNV 408

Query: 189 AICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGKASR 247
             CI L L  L       AI S+C I     Y +PI  +++  ++  +  GP+ LG AS 
Sbjct: 409 VFCIALNLIGLGSIEAIEAIFSVCAIALDWSYVIPIACKLIFGKRLNYKPGPWNLGWASH 468

Query: 248 PICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPV 307
            +   A  W  +   +FL+PT  P++    NYA V L   L   +++W   ARK + GP 
Sbjct: 469 FVNAYAVCWTAFVSVIFLMPTVRPVTPQNMNYAVVVLAGVLLFSLVYWWSGARKSYIGPR 528

Query: 308 RNIDNEN 314
            N+D E+
Sbjct: 529 INVDMES 535

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9C0Z0|YKM2_SCHPO Uncharacterized amino-acid permease PB24D3.02c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPB24D3.02c PE=3 SV=1

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 168/313 (53%), Gaps = 25/313 (7%)

Query: 8   TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 67
           T  + SY+F +FE     +G ++  ++ IL F    + L G++S A + EE K A K  P
Sbjct: 225 TRNTGSYIFGNFE---NYSGWTNMGWSFILCFTTPVWVLSGFESCATIVEEAKNASKAAP 281

Query: 68  IAILSSIGIISIFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126
           IAI+SS+ +    G+ +++ +  ++  DFS +    N   G  V +Q+LY+    R    
Sbjct: 282 IAIISSLTVSLFMGFCIMITIAGTMGHDFSSIL---NTPYGEPV-SQVLYNNLGKR---- 333

Query: 127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186
            GA+ +  V+  +  F   ++  +++R ++A +RDKG+P S I+R+L P   +P NA+ L
Sbjct: 334 -GAVGVSAVLIIALCFNCSALCLASSREIFAFARDKGLPGSWIFRKLTP-GGIPLNAILL 391

Query: 187 CAAICIILGLPILKVNVVFTAITSICTIGWVG---GYAVPIFARMVMAEQKFNAGPFYLG 243
                II+GL +L VNV  TAI+SI  +  +     Y++P+  R++    + N G FY G
Sbjct: 392 VNLYTIIVGLLML-VNV--TAISSIFNLAIIAFFISYSLPLVCRLLF--NRLNPGKFYCG 446

Query: 244 KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL---DAR 300
           K S+PI ++A  W+ +   + L P++   +    N+A V LG  +   + ++ L     +
Sbjct: 447 KFSKPISIVAVAWLWFMALMLLFPSYQNPNKVEMNWAIVVLGFTVFFCVGYYYLPKYGGK 506

Query: 301 KWFTGPVRNIDNE 313
            +F GPV+ +D  
Sbjct: 507 TFFKGPVKTVDEN 519

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q10087|YAO8_SCHPO Uncharacterized amino-acid permease C11D3.08c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.08c PE=3 SV=1

 Score =  117 bits (293), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 165/314 (52%), Gaps = 25/314 (7%)

Query: 8   TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 67
           T  S S++F  F      +G S+  +A ILSF    + + G++S+A + EE+  A K  P
Sbjct: 226 TRNSGSFIFGDFT---NYSGWSNMGWAFILSFTTPVWVVSGFESSAAVAEESTNAAKAAP 282

Query: 68  IAILSSIGIISIFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126
            A++SS+G+ +I GW +++ +  ++  DF+ +   S    G  V AQ+L +    +   +
Sbjct: 283 FAMISSLGVATILGWCIVITVVATMGHDFNAILGSS---LGQPV-AQVLVNNVGNK--GA 336

Query: 127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186
            G   LL++   +     +S+  +A+R V+A  RD GIP S   R L  K KVP NA+ L
Sbjct: 337 LGIFSLLVI---ALCLNCISLLIAASREVFAFCRDGGIPGSRYLRLLT-KQKVPLNAILL 392

Query: 187 CAAICIILGLPILKVNVVFTAITSICTIGWVG---GYAVPIFARMVMAEQKFNAGPFYLG 243
                +++GL IL VNV  TAI+S+  +  +     Y+ P+  R V    KF  G FY+G
Sbjct: 393 VLLYSLLVGLLIL-VNV--TAISSVFNLAIIALYIAYSGPLMCRFVY--NKFQPGVFYVG 447

Query: 244 KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL---DAR 300
           K S+P  L + +W+ +   + L P +   + D  N+A V LG  +   ++++ L     +
Sbjct: 448 KWSKPAALWSLVWMWFMILMLLFPQYQKPNQDEMNWAIVVLGFVMVFCVVYYYLPKIGGK 507

Query: 301 KWFTGPVRNIDNEN 314
            +FTGP+  +  EN
Sbjct: 508 TFFTGPIPTVQQEN 521

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O59942|AAP2_NEUCR Amino-acid permease 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=aap-2 PE=2 SV=2

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 137/297 (46%), Gaps = 14/297 (4%)

Query: 13  SYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILS 72
            Y FT+F+ S   +G S   +A +   L   + + G D  A + EE K      P AI +
Sbjct: 244 KYAFTNFQPS---SGWSPPGFAFLFGCLTPAWIMTGCDGTARIAEEAKNPQMVVPRAIAN 300

Query: 73  SIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIIL 132
           +     + G+   L L   + D     D  N  +G  V AQ+ ++   GR      AI  
Sbjct: 301 ATTFTYVIGFFFNLVLVVCMGDPK---DLINSPSGQPV-AQLFFNGM-GR----APAIFF 351

Query: 133 LIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI 192
            +  +G      +    + +R ++ALSRD  +PFS IW ++  + + P  AVW  A + I
Sbjct: 352 TLCGFGVMNLVAIPGIQAGSRTIFALSRDNLLPFSHIWVRISKRSQTPLIAVWTYAVLEI 411

Query: 193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLI 252
           I+ L  L  +    A+ ++CT+     Y +PI  +MV    +   GP+++GK S  +   
Sbjct: 412 IINLLGLASSTAIGAVFNVCTVALNVSYVIPIICKMVYG--RMQKGPWHMGKYSVWVNAF 469

Query: 253 AFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRN 309
           A  W  +   +F  PT  P++ +  NYA V     L   +++W    R ++TGP+ +
Sbjct: 470 AVAWNTFMAVIFFFPTRLPVTPENMNYAIVVFFFVLIFALVFWYTHGRHYYTGPLTH 526

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|O59813|YCT3_SCHPO Uncharacterized amino-acid permease C794.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC794.03 PE=2 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 129/272 (47%), Gaps = 14/272 (5%)

Query: 37  LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFS 96
           L+F  +   L GYD+A H+ EETK A KT    +  S    +I    +I+   + +   +
Sbjct: 256 LTFFCTARILVGYDAAGHVAEETKNASKTASRGMFYSAFSNAILSTGIIVMFLYCLPPSN 315

Query: 97  YLYD--KSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV-IWGSFFFGGLSVTTSAAR 153
            +Y+  KSN        +Q  + +F+         + + +V I G  F   LS+  S+ R
Sbjct: 316 VMYELIKSN--------SQQPFVSFYAYALGKRAHVFMNVVGILGMIFDTSLSIVASS-R 366

Query: 154 VVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 213
           +V+A++RD  +PFS  W +    H  P+NAV     I   L    L   V FT++ S   
Sbjct: 367 LVFAVARDGVLPFSG-WLRKVDSHGQPTNAVTFIFLISAALLCSNLPSAVAFTSLLSAAA 425

Query: 214 IGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPIS 273
           +  +  YA   F R+ ++   F    + LGK S+P  LI FLW  +T  +   P  YP++
Sbjct: 426 VPTIMAYAAVAFGRLFLSRNDFPKSEWSLGKLSKPFQLITFLWNLFTAVILFSPKAYPVT 485

Query: 274 WDTFNYAPVALGVGLGLIMLWWL-LDARKWFT 304
              FNYAPV  G      ++ WL + A +W T
Sbjct: 486 GKNFNYAPVIFGAITIFGLISWLSIPASRWST 517

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q09887|YC9D_SCHPO Uncharacterized amino-acid permease C584.13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC584.13 PE=3 SV=1

 Score =  107 bits (267), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 129/289 (44%), Gaps = 12/289 (4%)

Query: 30  SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALC 89
           S   A+++SF    +++ GYDS  HL+EE   A    P AI+ +     I GW L L + 
Sbjct: 241 SNGMAMLMSFAGVIWTMSGYDSPFHLSEECSNASVAAPRAIVMTSAFGGIVGWLLNLCIA 300

Query: 90  FSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTT 149
           ++I D +   +            Q+         + +T A+  L VI    F  G     
Sbjct: 301 YTIVDVNAAMNDDLGQPFVVYLRQVCN-------YKTTVALTSLTVICS--FMMGQGCMV 351

Query: 150 SAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAIT 209
           +A+RV Y+ +RD   PFS     +  + K P+  VW+   + I+  L I        AI 
Sbjct: 352 AASRVTYSYARDGVFPFSKYLAIVDKRTKTPNVCVWMNVVVGILCCLLIFAGEAAINAIF 411

Query: 210 SICTIGWVGGYAVPIFARM-VMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPT 268
           S+  I     +  PIF R+  + E +F  GP++LGK S+     A  ++     +   P 
Sbjct: 412 SVGAIAAFVAFTTPIFLRVFFVKEDEFKRGPWHLGKFSKINGYAACAFVLLMVPILCFPQ 471

Query: 269 FY--PISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNENG 315
           F     + D  N+  V  G  + ++++WW + ARKWF GP   I  ++ 
Sbjct: 472 FRGKDNTPDAMNWTCVVFGGPMLMVLIWWFVSARKWFKGPRLTIGVDDA 520

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P32837|UGA4_YEAST GABA-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UGA4 PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 79/249 (31%), Positives = 123/249 (49%), Gaps = 16/249 (6%)

Query: 39  FLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ-DFSY 97
           F+ + +++  +DS  H +EE K A K+ PI I+SSI +  I GW +I+ L   I  D   
Sbjct: 283 FMPAVWTIGSFDSCVHQSEEAKDAKKSVPIGIISSIAVCWILGWLIIICLMACINPDIDS 342

Query: 98  LYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA 157
           + D        F  AQI+YD+   ++     AI  + +I    F  G S+TT+ +R V+A
Sbjct: 343 VLDSKY----GFALAQIIYDSLGKKW-----AIAFMSLIAFCQFLMGASITTAVSRQVWA 393

Query: 158 LSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWV 217
            SRD G+P S   +++  K+ VP  A+       +ILGL  L  +    A+ S+   G  
Sbjct: 394 FSRDNGLPLSKYIKRVDSKYSVPFFAILAACVGSLILGLLCLIDDAATDALFSLAVAGNN 453

Query: 218 GGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF----YPIS 273
             ++ P   R+      F  GPFYLGK   PI  +A+  + +   + +L  F    + I+
Sbjct: 454 LAWSTPTVFRLTSGRDLFRPGPFYLGKIWSPI--VAWTGVAFQLFIIILVMFPSQQHGIT 511

Query: 274 WDTFNYAPV 282
             T NYA V
Sbjct: 512 KSTMNYACV 520

Required for high-affinity, high-specificity GABA transport. Also transports putrescine.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P19807|HNM1_YEAST Choline transport protein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HNM1 PE=1 SV=1

 Score =  104 bits (260), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 141/307 (45%), Gaps = 13/307 (4%)

Query: 10  QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIA 69
             A +VF  F      TG  +   A I+  +   +S    D A H+  E +  ++  PIA
Sbjct: 237 NDAKFVFATFN---NETGWKNGGIAFIVGLINPAWSFSCLDCATHMAFEVEKPERVIPIA 293

Query: 70  ILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 129
           I+ ++ I  +  +  ++A+ FSIQD   +    + T GA      + D ++    N +GA
Sbjct: 294 IMGTVAIGFVTSFCYVIAMFFSIQDLDAVL---SSTTGA-----PILDIYNQALGNKSGA 345

Query: 130 IILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189
           I L  +I  + F   ++  T  AR+ ++ +RD G+P S +W Q++P   VP NA  +  A
Sbjct: 346 IFLGCLILFTSFGCVIACHTWQARLCWSFARDNGLPLSRLWSQVNPHTGVPLNAHLMSCA 405

Query: 190 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPI 249
              ++GL  L  +  F ++ + C    +  Y +P+   ++  ++    GPF+LGK     
Sbjct: 406 WITLIGLLYLASSTAFQSLITGCIAFLLLSYIIPVIC-LLAKKRNIAHGPFWLGKFGFFS 464

Query: 250 CLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRN 309
            ++   W  ++   F  P   P++ D  NY  V +       +L+W    +K F   +  
Sbjct: 465 NIVLLGWTVFSVVFFSFPPVLPVTKDNMNYVCVVIVGYTAYSILYWKYKGKKEFHA-LEE 523

Query: 310 IDNENGK 316
            +NE  +
Sbjct: 524 SENEQAE 530

Sole choline transporter in yeast.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
356507445	527	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.601	0.840	1e-162
357464761	528	Amino-acid permease, putative [Medicago	1.0	0.600	0.864	1e-161
356518789	542	PREDICTED: LOW QUALITY PROTEIN: uncharac	1.0	0.584	0.831	1e-161
224093575	538	amino acid transporter [Populus trichoca	1.0	0.589	0.827	1e-159
296082588	522	unnamed protein product [Vitis vinifera]	1.0	0.607	0.880	1e-155
242073140	525	hypothetical protein SORBIDRAFT_06g01710	0.990	0.598	0.837	1e-155
225438400	512	PREDICTED: uncharacterized amino-acid pe	1.0	0.619	0.880	1e-155
147773952	512	hypothetical protein VITISV_000645 [Viti	1.0	0.619	0.880	1e-154
413918355	525	amino acid permease [Zea mays]	1.0	0.603	0.820	1e-153
226498468	525	amino acid permease [Zea mays] gi|195616	0.996	0.601	0.820	1e-152

>gi|356507445|ref|XP_003522477.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/332 (84%), Positives = 301/332 (90%), Gaps = 15/332 (4%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVALTT+SAS+VFTH E++PE+TG+SSKPYAVILSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 196 MLPLVALTTKSASFVFTHLELAPESTGVSSKPYAVILSFLVSQYSLYGYDAAAHLTEETK 255

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQ---------------DFSYLYDKSNET 105
           GADK GPIAIL SIGII++FGWA ILAL FSIQ               DF YLYD +NET
Sbjct: 256 GADKNGPIAILGSIGIITVFGWAYILALTFSIQVNILSXXHHFSTLMQDFGYLYDPNNET 315

Query: 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 165
           AGAFVPAQILYDAFHGRYHNS GAIILL VIWGSFFFGGLS+TTSAARVVYALSRDKG+P
Sbjct: 316 AGAFVPAQILYDAFHGRYHNSAGAIILLFVIWGSFFFGGLSITTSAARVVYALSRDKGVP 375

Query: 166 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIF 225
           FS +WRQLHPK+KVPSNAVWLCAAICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIF
Sbjct: 376 FSHLWRQLHPKYKVPSNAVWLCAAICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIF 435

Query: 226 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALG 285
           AR+VM+E+ F  GPFYLGKA RP+CL+AFLWICYTCSVFLLPT YPI+WDTFNYAPVALG
Sbjct: 436 ARLVMSEKNFKPGPFYLGKARRPVCLVAFLWICYTCSVFLLPTLYPITWDTFNYAPVALG 495

Query: 286 VGLGLIMLWWLLDARKWFTGPVRNIDNENGKV 317
           VGLGLIMLWWLLDARKWFTGPVRNID +NGKV
Sbjct: 496 VGLGLIMLWWLLDARKWFTGPVRNIDIQNGKV 527

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464761|ref|XP_003602662.1| Amino-acid permease, putative [Medicago truncatula] gi|358348396|ref|XP_003638233.1| Amino-acid permease, putative [Medicago truncatula] gi|355491710|gb|AES72913.1| Amino-acid permease, putative [Medicago truncatula] gi|355504168|gb|AES85371.1| Amino-acid permease, putative [Medicago truncatula]

 Score =  574 bits (1479), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 274/317 (86%), Positives = 296/317 (93%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           +LPLVALT QSA+YVFT+FE++ + TG+SSKPYAVILSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 212 LLPLVALTKQSATYVFTNFELASDTTGVSSKPYAVILSFLVSQYSLYGYDAAAHLTEETK 271

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAIL SIGIIS+FGWA ILAL FSIQDF YLYD +NETAGAFVPAQILYDAFH
Sbjct: 272 GADKNGPIAILGSIGIISVFGWAYILALTFSIQDFGYLYDPNNETAGAFVPAQILYDAFH 331

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRYHNS GAI+LL +IWGSFFFGGLS+TTSAARVVYALSRDKG+PFS +WR+LHPKHKVP
Sbjct: 332 GRYHNSAGAIVLLFIIWGSFFFGGLSITTSAARVVYALSRDKGVPFSFLWRKLHPKHKVP 391

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           +NAVWLCAAICI+LGLPILKVNVVFTAITSI TIGWVGGYAVPIFARMVM E+ F  GPF
Sbjct: 392 TNAVWLCAAICILLGLPILKVNVVFTAITSIATIGWVGGYAVPIFARMVMPEKNFKPGPF 451

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLGKASRP CLIAFLWICYTCSVFLLPT YPI+WDTFNYAPVALGVGLGLIMLWW+LDAR
Sbjct: 452 YLGKASRPTCLIAFLWICYTCSVFLLPTLYPITWDTFNYAPVALGVGLGLIMLWWVLDAR 511

Query: 301 KWFTGPVRNIDNENGKV 317
           KWF GPVRNID +NGKV
Sbjct: 512 KWFKGPVRNIDAQNGKV 528

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518789|ref|XP_003528060.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized amino-acid permease C15C4.04c-like [Glycine max]

 Score =  573 bits (1477), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/332 (83%), Positives = 300/332 (90%), Gaps = 15/332 (4%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVALTT+SAS+VFTH E++PE+TG+SSKPYAVILSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 211 MLPLVALTTKSASFVFTHLELAPESTGVSSKPYAVILSFLVSQYSLYGYDAAAHLTEETK 270

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQ---------------DFSYLYDKSNET 105
           GADK GPIAIL SIGII++FGWA ILAL FSIQ               DF YLYD +NET
Sbjct: 271 GADKNGPIAILGSIGIITVFGWAYILALTFSIQVNILSXXRHFLTLMQDFGYLYDPNNET 330

Query: 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 165
           AGAFVPAQILYDAFHGRYHNS GAIILL VIWGSFFFGGLS+TTSAARVVYALSRDKG+P
Sbjct: 331 AGAFVPAQILYDAFHGRYHNSAGAIILLFVIWGSFFFGGLSITTSAARVVYALSRDKGVP 390

Query: 166 FSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIF 225
           FS +WRQLHPK+K+PSNAVWLCAAICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIF
Sbjct: 391 FSHLWRQLHPKYKIPSNAVWLCAAICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIF 450

Query: 226 ARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALG 285
           AR+VM+E+ F  GPFYLGKA RP+CL+AFLWICYTCSVFLLPT YPI+WDTFNYAPVALG
Sbjct: 451 ARLVMSEKNFKPGPFYLGKARRPVCLVAFLWICYTCSVFLLPTLYPITWDTFNYAPVALG 510

Query: 286 VGLGLIMLWWLLDARKWFTGPVRNIDNENGKV 317
           VGLG+IMLWWLLDARKWFTGPVRNID +NG V
Sbjct: 511 VGLGIIMLWWLLDARKWFTGPVRNIDIQNGMV 542

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093575|ref|XP_002309938.1| amino acid transporter [Populus trichocarpa] gi|222852841|gb|EEE90388.1| amino acid transporter [Populus trichocarpa]

 Score =  566 bits (1459), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 273/330 (82%), Positives = 298/330 (90%), Gaps = 13/330 (3%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLV+LTTQSASYVFTHFE +P++TGISSKPY V+LSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 209 MLPLVSLTTQSASYVFTHFETAPDSTGISSKPYVVVLSFLVSQYSLYGYDAAAHLTEETK 268

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQ-------------DFSYLYDKSNETAG 107
           GADK GPIAILSSIGII++FGWA ILAL FSIQ             DF YLYD SNETAG
Sbjct: 269 GADKNGPIAILSSIGIITVFGWAYILALTFSIQVCLASRTTALLIPDFGYLYDPSNETAG 328

Query: 108 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 167
           AFVPAQILYDAF GRYHNS GAI+LL +IWGSFFFGGLS+TTSAARVVYALSRD+GIPFS
Sbjct: 329 AFVPAQILYDAFQGRYHNSAGAIVLLFIIWGSFFFGGLSITTSAARVVYALSRDEGIPFS 388

Query: 168 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR 227
           SIWR++HPKHKVPSNAVWLCAAICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR
Sbjct: 389 SIWRKIHPKHKVPSNAVWLCAAICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFAR 448

Query: 228 MVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVG 287
           +VM E+ F AGPFYLG+A RP+C+IAFLWICYTCSVFLLPT+YP+SW+TFNYAPVA+GVG
Sbjct: 449 IVMDEKNFKAGPFYLGRARRPVCIIAFLWICYTCSVFLLPTYYPLSWNTFNYAPVAIGVG 508

Query: 288 LGLIMLWWLLDARKWFTGPVRNIDNENGKV 317
           L  IMLWW+LDARKWF GPVRNID  NGKV
Sbjct: 509 LSSIMLWWMLDARKWFKGPVRNIDISNGKV 538

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082588|emb|CBI21593.3| unnamed protein product [Vitis vinifera]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/317 (88%), Positives = 297/317 (93%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVALTTQSASYVFTHFE + E+TGIS+  YA ILS LVSQYSLYGYD+AAHLTEETK
Sbjct: 206 MLPLVALTTQSASYVFTHFETASESTGISNVVYAAILSVLVSQYSLYGYDAAAHLTEETK 265

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIISIFGWA ILAL FSIQD SYLYD +NETAGAFVPAQILYDAFH
Sbjct: 266 GADKNGPIAILSSIGIISIFGWAYILALTFSIQDPSYLYDPTNETAGAFVPAQILYDAFH 325

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRYHN+TGAIILL +IWGSFFFGGLS+TTSAARVVYALSRD+GIPFSSIWR++HPKHKVP
Sbjct: 326 GRYHNATGAIILLFIIWGSFFFGGLSITTSAARVVYALSRDEGIPFSSIWRKVHPKHKVP 385

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           SNAVWLCA ICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE+ F  GPF
Sbjct: 386 SNAVWLCAVICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPF 445

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLGKA RP+CL+AFLWICYTC VFLLPTFYPI+WDTFNYAPVALGVGLGLIMLWW+LDAR
Sbjct: 446 YLGKARRPVCLVAFLWICYTCCVFLLPTFYPITWDTFNYAPVALGVGLGLIMLWWMLDAR 505

Query: 301 KWFTGPVRNIDNENGKV 317
           KWF GPVRNID +NGKV
Sbjct: 506 KWFKGPVRNIDIQNGKV 522

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073140|ref|XP_002446506.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor] gi|241937689|gb|EES10834.1| hypothetical protein SORBIDRAFT_06g017100 [Sorghum bicolor]

 Score =  553 bits (1425), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 263/314 (83%), Positives = 287/314 (91%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVA TTQ ASYVFTHF+ SP+ TGISS  YAV+LSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 207 MLPLVAKTTQPASYVFTHFQTSPDVTGISSSSYAVVLSFLVSQYSLYGYDAAAHLTEETK 266

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIIS+FGWA ILAL FSIQDFSYLYD SNETAGAFVPAQILYDAFH
Sbjct: 267 GADKNGPIAILSSIGIISVFGWAYILALTFSIQDFSYLYDASNETAGAFVPAQILYDAFH 326

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRY +S GAI+LL+VIWGSFFFGGLS+TTSAARVVYALSRD+G+P SS+WR++HP+HKVP
Sbjct: 327 GRYGSSAGAIVLLLVIWGSFFFGGLSITTSAARVVYALSRDRGVPLSSVWRRIHPRHKVP 386

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           +NAVWLCAA+C +LGLPIL++NVVFTAITSI TIGWVGGYAVPIFARMVM E  F  GPF
Sbjct: 387 ANAVWLCAAVCALLGLPILRINVVFTAITSIATIGWVGGYAVPIFARMVMREDDFRPGPF 446

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLG+ASRP+CL+AFLWICYTCSVFLLPT YPI  DTFNYAP+ALGV LGLIMLWWLLDAR
Sbjct: 447 YLGRASRPVCLVAFLWICYTCSVFLLPTVYPIKMDTFNYAPIALGVVLGLIMLWWLLDAR 506

Query: 301 KWFTGPVRNIDNEN 314
           KWF GPVRNID  N
Sbjct: 507 KWFKGPVRNIDEHN 520

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438400|ref|XP_002274762.1| PREDICTED: uncharacterized amino-acid permease C15C4.04c-like [Vitis vinifera]

 Score =  553 bits (1424), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 279/317 (88%), Positives = 297/317 (93%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVALTTQSASYVFTHFE + E+TGIS+  YA ILS LVSQYSLYGYD+AAHLTEETK
Sbjct: 196 MLPLVALTTQSASYVFTHFETASESTGISNVVYAAILSVLVSQYSLYGYDAAAHLTEETK 255

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIISIFGWA ILAL FSIQD SYLYD +NETAGAFVPAQILYDAFH
Sbjct: 256 GADKNGPIAILSSIGIISIFGWAYILALTFSIQDPSYLYDPTNETAGAFVPAQILYDAFH 315

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRYHN+TGAIILL +IWGSFFFGGLS+TTSAARVVYALSRD+GIPFSSIWR++HPKHKVP
Sbjct: 316 GRYHNATGAIILLFIIWGSFFFGGLSITTSAARVVYALSRDEGIPFSSIWRKVHPKHKVP 375

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           SNAVWLCA ICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE+ F  GPF
Sbjct: 376 SNAVWLCAVICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPF 435

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLGKA RP+CL+AFLWICYTC VFLLPTFYPI+WDTFNYAPVALGVGLGLIMLWW+LDAR
Sbjct: 436 YLGKARRPVCLVAFLWICYTCCVFLLPTFYPITWDTFNYAPVALGVGLGLIMLWWMLDAR 495

Query: 301 KWFTGPVRNIDNENGKV 317
           KWF GPVRNID +NGKV
Sbjct: 496 KWFKGPVRNIDIQNGKV 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773952|emb|CAN60789.1| hypothetical protein VITISV_000645 [Vitis vinifera]

 Score =  551 bits (1421), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 279/317 (88%), Positives = 296/317 (93%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVALTTQSASYVFTHFE + E+TGIS+  YA ILS LVSQYSLYGYD+AAHLTEETK
Sbjct: 196 MLPLVALTTQSASYVFTHFETASESTGISNVVYAAILSVLVSQYSLYGYDAAAHLTEETK 255

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIISIFGWA ILAL FSIQD SYLYD +NETAGAFVPAQILYDAFH
Sbjct: 256 GADKNGPIAILSSIGIISIFGWAYILALTFSIQDPSYLYDPTNETAGAFVPAQILYDAFH 315

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRYHN+TGAIILL +IWGSFFFGGLS+TTSAARVVYALSRD+GIPFSSIWR++HPKHKVP
Sbjct: 316 GRYHNATGAIILLFIIWGSFFFGGLSITTSAARVVYALSRDEGIPFSSIWRKVHPKHKVP 375

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           SNAVWLCA ICI+LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAE+ F  GPF
Sbjct: 376 SNAVWLCAVICILLGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEKNFKPGPF 435

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLGKA RP+CL AFLWICYTC VFLLPTFYPI+WDTFNYAPVALGVGLGLIMLWW+LDAR
Sbjct: 436 YLGKARRPVCLXAFLWICYTCCVFLLPTFYPITWDTFNYAPVALGVGLGLIMLWWMLDAR 495

Query: 301 KWFTGPVRNIDNENGKV 317
           KWF GPVRNID +NGKV
Sbjct: 496 KWFKGPVRNIDIQNGKV 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413918355|gb|AFW58287.1| amino acid permease [Zea mays]

 Score =  547 bits (1410), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 261/318 (82%), Positives = 289/318 (90%), Gaps = 1/318 (0%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVA TTQ ASYVFTHF+ +P+ TGI S  YAV+LSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 208 MLPLVAKTTQPASYVFTHFQTAPDVTGIGSSAYAVVLSFLVSQYSLYGYDAAAHLTEETK 267

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIIS+FGWA ILAL FSIQDFSYLY+ +NETAG FVPAQILYDAFH
Sbjct: 268 GADKNGPIAILSSIGIISVFGWAYILALTFSIQDFSYLYNPNNETAGTFVPAQILYDAFH 327

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRY++S GAI+LL VIWGSFFFGGLS+TTSAARVVYALSRD+G+P SS+WR++HP+HKVP
Sbjct: 328 GRYNSSAGAIVLLFVIWGSFFFGGLSITTSAARVVYALSRDQGVPLSSVWRRIHPRHKVP 387

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           +NAVWLCAA+C +LGLPIL++NVVFTAITSI TIGWVGGYAVPIFARMVM E  F  GPF
Sbjct: 388 ANAVWLCAAVCTLLGLPILRINVVFTAITSIATIGWVGGYAVPIFARMVMREDDFRPGPF 447

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLG+ASRP+CL+AFLWICYTCSVFLLPT YPI  DTFNYAP+ALGV LGLIMLWWLLDAR
Sbjct: 448 YLGRASRPVCLVAFLWICYTCSVFLLPTVYPIKMDTFNYAPIALGVCLGLIMLWWLLDAR 507

Query: 301 KWFTGPVRNIDNE-NGKV 317
           KWF GPVRNID+  NGKV
Sbjct: 508 KWFKGPVRNIDDHNNGKV 525

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226498468|ref|NP_001148156.1| amino acid permease [Zea mays] gi|195616234|gb|ACG29947.1| amino acid permease [Zea mays]

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 260/317 (82%), Positives = 288/317 (90%), Gaps = 1/317 (0%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           MLPLVA TTQ ASYVFTHF+ +P+ TGI S  YAV+LSFLVSQYSLYGYD+AAHLTEETK
Sbjct: 208 MLPLVAKTTQPASYVFTHFQTAPDVTGIGSSAYAVVLSFLVSQYSLYGYDAAAHLTEETK 267

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
           GADK GPIAILSSIGIIS+FGWA ILAL FSIQDFSYLY+ +NETAG FVPAQILYDAFH
Sbjct: 268 GADKNGPIAILSSIGIISVFGWAYILALTFSIQDFSYLYNPNNETAGTFVPAQILYDAFH 327

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
           GRY++S GAI+LL VIWGSFFFGGLS+TTSAARVVYALSRD+G+P SS+WR++HP+HKVP
Sbjct: 328 GRYNSSAGAIVLLFVIWGSFFFGGLSITTSAARVVYALSRDQGVPLSSVWRRIHPRHKVP 387

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
           +NAVWLCAA+C +LGLPIL++NVVFTAITSI TIGWVGGYAVPIFARMVM E  F  GPF
Sbjct: 388 ANAVWLCAAVCTLLGLPILRINVVFTAITSIATIGWVGGYAVPIFARMVMREDDFRPGPF 447

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           YLG+ASRP+CL+AFLWICYTCSVFLLPT YPI  DTFNYAP+ALGV LGLIMLWWLLDAR
Sbjct: 448 YLGRASRPVCLVAFLWICYTCSVFLLPTVYPIKMDTFNYAPIALGVCLGLIMLWWLLDAR 507

Query: 301 KWFTGPVRNI-DNENGK 316
           KWF GPVRNI D+ NGK
Sbjct: 508 KWFKGPVRNINDHHNGK 524

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
TAIR|locus:2038811	516	BAT1 "AT2G01170" [Arabidopsis	0.968	0.594	0.396	4.5e-59
POMBASE|SPBC15C4.04c	542	SPBC15C4.04c "amino acid perme	0.917	0.536	0.306	9.3e-32
POMBASE|SPCC794.03	554	SPCC794.03 "amino acid permeas	0.813	0.465	0.316	2.4e-28
POMBASE|SPAPB24D3.02c	543	SPAPB24D3.02c "amino acid perm	0.908	0.530	0.296	4.9e-28
POMBASE|SPAC11D3.08c	550	SPAC11D3.08c "amino acid perme	0.911	0.525	0.302	5.2e-28
ASPGD|ASPL0000060974	530	AN1061 [Emericella nidulans (t	0.917	0.549	0.268	1.2e-26
ASPGD|ASPL0000040382	520	gabA [Emericella nidulans (tax	0.848	0.517	0.291	4.1e-26
UNIPROTKB|G4NFY0	512	MGG_08670 "Choline transporter	0.883	0.546	0.286	1e-25
ASPGD|ASPL0000007717	570	AN5968 [Emericella nidulans (t	0.949	0.528	0.264	1.2e-25
ASPGD|ASPL0000048361	553	AN2287 [Emericella nidulans (t	0.599	0.343	0.335	1.7e-25

TAIR|locus:2038811 BAT1 "AT2G01170" [Arabidopsis thaliana (taxid:3702)]

 Score = 606 (218.4 bits), Expect = 4.5e-59, P = 4.5e-59
 Identities = 123/310 (39%), Positives = 179/310 (57%)

Query:     1 MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
             ++PLV+    +  +VFT+F  +    GI+S  Y  +L  L+SQY++ GYD++AH+TEET 
Sbjct:   208 LIPLVSTERATTKFVFTNFN-TDNGLGITSYAYIFVLGLLMSQYTITGYDASAHMTEETV 266

Query:    61 GADKTGPXXXXXXXXXXXXFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
              ADK GP            FGW  IL + +++ D   L  ++N + G +  A+I Y AF 
Sbjct:   267 DADKNGPRGIISAIGISILFGWGYILGISYAVTDIPSLLSETNNSGG-YAIAEIFYLAFK 325

Query:   121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
              R+ + TG I+ L V+  + FF G+S  TS +R+ YA SRD  +P S +W +++ + +VP
Sbjct:   326 NRFGSGTGGIVCLGVVAVAVFFCGMSSVTSNSRMAYAFSRDGAMPMSPLWHKVNSR-EVP 384

Query:   181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
              NAVWL A I   + L  L   V F A+ SI TIG    YA+PI  R+ +A   F  GPF
Sbjct:   385 INAVWLSALISFCMALTSLGSIVAFQAMVSIATIGLYIAYAIPIILRVTLARNTFVPGPF 444

Query:   241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
              LGK    +  +A LW+     +F LP  YPI+ +T NY PVA+   + + + +WL  AR
Sbjct:   445 SLGKYGMVVGWVAVLWVVTISVLFSLPVAYPITAETLNYTPVAVAGLVAITLSYWLFSAR 504

Query:   301 KWFTGPVRNI 310
              WFTGP+ NI
Sbjct:   505 HWFTGPISNI 514

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IDA

GO:0015180 "L-alanine transmembrane transporter activity" evidence=IDA

GO:0015181 "arginine transmembrane transporter activity" evidence=IDA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015185 "gamma-aminobutyric acid transmembrane transporter activity" evidence=IMP

GO:0015812 "gamma-aminobutyric acid transport" evidence=IMP

POMBASE|SPBC15C4.04c SPBC15C4.04c "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 351 (128.6 bits), Expect = 9.3e-32, P = 9.3e-32
 Identities = 94/307 (30%), Positives = 143/307 (46%)

Query:    11 SASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPXXX 70
             +  YVFT  + S   +G     ++ +  FL   + +  YD+ AH+ EE + A    P   
Sbjct:   242 TGKYVFTDVQAS---SGWHPIGFSFLFGFLSVAWCMTDYDATAHIAEEIENAAVRAPNAI 298

Query:    71 XXXXXXXXXFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 129
                       GW   + L F++  D   L    N   G  V AQI Y+   G+  +    
Sbjct:   299 ALALSITYVLGWVFNIVLAFTMGTDLDSLI---NSELGQPV-AQIFYNVL-GKKGSMAFT 353

Query:   130 IILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189
             I+  I+I     F G++   + AR ++A SRD+ +PFS  W +++     P  AVWL   
Sbjct:   354 ILSFIII----NFTGITAMQANARTIWAFSRDQALPFSRYWYKINKTTTTPVIAVWLNVV 409

Query:   190 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGKASRP 248
              CI L L  L       AI S+C I     Y +PI  +++  ++  +  GP+ LG AS  
Sbjct:   410 FCIALNLIGLGSIEAIEAIFSVCAIALDWSYVIPIACKLIFGKRLNYKPGPWNLGWASHF 469

Query:   249 ICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVAL-GVGLGLIMLWWLLDARKWFTGPV 307
             +   A  W  +   +FL+PT  P++    NYA V L GV L  ++ WW   ARK + GP 
Sbjct:   470 VNAYAVCWTAFVSVIFLMPTVRPVTPQNMNYAVVVLAGVLLFSLVYWWS-GARKSYIGPR 528

Query:   308 RNIDNEN 314
              N+D E+
Sbjct:   529 INVDMES 535

GO:0003333 "amino acid transmembrane transport" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0032153 "cell division site" evidence=IDA

GO:0051286 "cell tip" evidence=IDA

POMBASE|SPCC794.03 SPCC794.03 "amino acid permease (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 304 (112.1 bits), Expect = 2.4e-28, Sum P(2) = 2.4e-28
 Identities = 86/272 (31%), Positives = 125/272 (45%)

Query:    37 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPXXXXXXXXXXXXFGWALILALCFSIQDFS 96
             L+F  +   L GYD+A H+ EETK A KT                  +I+   + +   +
Sbjct:   256 LTFFCTARILVGYDAAGHVAEETKNASKTASRGMFYSAFSNAILSTGIIVMFLYCLPPSN 315

Query:    97 YLYD--KSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARV 154
              +Y+  KSN     FV +   Y A   R H      + ++ I G  F   LS+  S+ R+
Sbjct:   316 VMYELIKSNSQQ-PFV-SFYAY-ALGKRAH----VFMNVVGILGMIFDTSLSIVASS-RL 367

Query:   155 VYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTI 214
             V+A++RD  +PFS  W +    H  P+NAV     I   L    L   V FT++ S   +
Sbjct:   368 VFAVARDGVLPFSG-WLRKVDSHGQPTNAVTFIFLISAALLCSNLPSAVAFTSLLSAAAV 426

Query:   215 GWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISW 274
               +  YA   F R+ ++   F    + LGK S+P  LI FLW  +T  +   P  YP++ 
Sbjct:   427 PTIMAYAAVAFGRLFLSRNDFPKSEWSLGKLSKPFQLITFLWNLFTAVILFSPKAYPVTG 486

Query:   275 DTFNYAPVALGVG--LGLIMLWWLLDARKWFT 304
               FNYAPV  G     GLI  W  + A +W T
Sbjct:   487 KNFNYAPVIFGAITIFGLIS-WLSIPASRWST 517

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=ISM

GO:0055085 "transmembrane transport" evidence=ISM

POMBASE|SPAPB24D3.02c SPAPB24D3.02c "amino acid permease, unknown 3 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 318 (117.0 bits), Expect = 4.9e-28, P = 4.9e-28
 Identities = 93/314 (29%), Positives = 162/314 (51%)

Query:     8 TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 67
             T  + SY+F +FE     +G ++  ++ IL F    + L G++S A + EE K A K  P
Sbjct:   225 TRNTGSYIFGNFE---NYSGWTNMGWSFILCFTTPVWVLSGFESCATIVEEAKNASKAAP 281

Query:    68 XXXXXXXXXXXXFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126
                          G+ +++ +  ++  DFS +    N   G  V +Q+LY+    R   +
Sbjct:   282 IAIISSLTVSLFMGFCIMITIAGTMGHDFSSIL---NTPYGEPV-SQVLYNNLGKR--GA 335

Query:   127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186
              G   +LI+   +  F   ++  +++R ++A +RDKG+P S I+R+L P   +P NA+ L
Sbjct:   336 VGVSAVLII---ALCFNCSALCLASSREIFAFARDKGLPGSWIFRKLTPGG-IPLNAILL 391

Query:   187 CAAICIILGLPILKVNVVFTAITSICTIGWVG---GYAVPIFARMVMAEQKFNAGPFYLG 243
                  II+GL +L VNV  TAI+SI  +  +     Y++P+  R++    + N G FY G
Sbjct:   392 VNLYTIIVGLLML-VNV--TAISSIFNLAIIAFFISYSLPLVCRLLF--NRLNPGKFYCG 446

Query:   244 KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLD---AR 300
             K S+PI ++A  W+ +   + L P++   +    N+A V LG  +   + ++ L     +
Sbjct:   447 KFSKPISIVAVAWLWFMALMLLFPSYQNPNKVEMNWAIVVLGFTVFFCVGYYYLPKYGGK 506

Query:   301 KWFTGPVRNIDNEN 314
              +F GPV+ +D EN
Sbjct:   507 TFFKGPVKTVD-EN 519

GO:0003333 "amino acid transmembrane transport" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

POMBASE|SPAC11D3.08c SPAC11D3.08c "amino acid permease, unknown 1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 318 (117.0 bits), Expect = 5.2e-28, P = 5.2e-28
 Identities = 95/314 (30%), Positives = 157/314 (50%)

Query:     8 TTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP 67
             T  S S++F  F      +G S+  +A ILSF    + + G++S+A + EE+  A K  P
Sbjct:   226 TRNSGSFIFGDFT---NYSGWSNMGWAFILSFTTPVWVVSGFESSAAVAEESTNAAKAAP 282

Query:    68 XXXXXXXXXXXXFGWALILALCFSI-QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS 126
                          GW +++ +  ++  DF+ +   S    G  V AQ+L +    +   +
Sbjct:   283 FAMISSLGVATILGWCIVITVVATMGHDFNAILGSS---LGQPV-AQVLVNNVGNK--GA 336

Query:   127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL 186
              G   LL++   +     +S+  +A+R V+A  RD GIP S   R L  K KVP NA+ L
Sbjct:   337 LGIFSLLVI---ALCLNCISLLIAASREVFAFCRDGGIPGSRYLRLL-TKQKVPLNAILL 392

Query:   187 CAAICIILGLPILKVNVVFTAITSICTIGWVG---GYAVPIFARMVMAEQKFNAGPFYLG 243
                  +++GL IL VNV  TAI+S+  +  +     Y+ P+  R V    KF  G FY+G
Sbjct:   393 VLLYSLLVGLLIL-VNV--TAISSVFNLAIIALYIAYSGPLMCRFVY--NKFQPGVFYVG 447

Query:   244 KASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALG-VGLGLIMLWWL--LDAR 300
             K S+P  L + +W+ +   + L P +   + D  N+A V LG V +  ++ ++L  +  +
Sbjct:   448 KWSKPAALWSLVWMWFMILMLLFPQYQKPNQDEMNWAIVVLGFVMVFCVVYYYLPKIGGK 507

Query:   301 KWFTGPVRNIDNEN 314
              +FTGP+  +  EN
Sbjct:   508 TFFTGPIPTVQQEN 521

GO:0003333 "amino acid transmembrane transport" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

ASPGD|ASPL0000060974 AN1061 [Emericella nidulans (taxid:162425)]

 Score = 305 (112.4 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 81/302 (26%), Positives = 132/302 (43%)

Query:    10 QSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPXX 69
             ++  +VF HF+ S   +G  S  +A  +    + Y+L GY   A + EE +   +  P  
Sbjct:   206 RNGKFVFGHFDASE--SGWPSG-WAFFVGLQQAAYTLTGYGMVAAMCEEVQNPHREVPKA 262

Query:    70 XXXXXXXXXXFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGA 129
                        G   ++ + F + D   L    N  +G   P  +++    G   ++ G 
Sbjct:   263 IVLSVVAAGITGLVYLIPILFVLPDIKTLL---NVASGQ--PIGLVFKTATG---SAGGG 314

Query:   130 IILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA 189
               LL +I G   F G+   T+A+R  YA +RD  IP   +WR+++ +  VP  A+ L   
Sbjct:   315 FGLLFLILGILMFAGIGSLTAASRCTYAFARDGAIPGFRLWRRVNKRLDVPVWAIILSTT 374

Query:   190 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPI 249
             +  +LGL     +  F A T + TI     YA+PI   ++   Q      F LG+    I
Sbjct:   375 VICLLGLIYFGSSAAFNAFTGVTTICLSSSYALPILISVLRGRQAVKHSSFSLGRFGYAI 434

Query:   250 CLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRN 309
              +   +WIC    +  +P   P+   + NYA V       + + W+   ARK FTGP   
Sbjct:   435 NVATVVWICLAVVICCMPVSLPVDASSMNYASVVFAGFAAISVTWYFAYARKHFTGPPIP 494

Query:   310 ID 311
             +D
Sbjct:   495 VD 496

GO:0016020 "membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0015203 "polyamine transmembrane transporter activity" evidence=IEA

GO:0015846 "polyamine transport" evidence=IEA

ASPGD|ASPL0000040382 gabA [Emericella nidulans (taxid:162425)]

 Score = 300 (110.7 bits), Expect = 4.1e-26, P = 4.1e-26
 Identities = 82/281 (29%), Positives = 126/281 (44%)

Query:    34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPXXXXXXXXXXXXFGWALILALCFSIQ 93
             A +L  L   + L G+D  AH+ EE       GP             G   ++ L F   
Sbjct:   228 AWLLGLLQGGFGLTGFDGVAHMIEEIPNPTVLGPRIMIGCVCIGITTGLIFLIVLLFVAG 287

Query:    94 DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAAR 153
             D + + +       A  P   L   FH   +++ G+I LL+       F   ++ T+++R
Sbjct:   288 DINLVIES------AATP---LLQIFHDATNSNAGSICLLMFPLVCTVFAATTIMTTSSR 338

Query:   154 VVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 213
             +VYA +RD G+P S  + ++HPK +VP N ++L     I+ G   L  +  F AITS   
Sbjct:   339 MVYAFARDGGLPASPFFSRVHPKLQVPLNGLYLTMFCVIVFGCIFLGSSSAFNAITSSSV 398

Query:   214 IGWVGGYAVPIFARMVMAEQKFNAGPFYLGKA-SRPICLIAFLWICYTCSVFLLPTFYPI 272
             +     Y +PI    +   Q      F L +A    + LIA  +I  T  +FL P   P+
Sbjct:   399 VMLDVAYGIPIAINCLRGRQMIPERAFVLPQALGWMVNLIALAYISLTTVLFLFPPELPV 458

Query:   273 SWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE 313
             +    NY   A G+ L +    W++D RK FTGP   +D E
Sbjct:   459 TGSNMNYCVAAFGIVLIISAFQWIVDGRKHFTGP--RVDAE 497

GO:0071467 "cellular response to pH" evidence=IDA

GO:0015812 "gamma-aminobutyric acid transport" evidence=ISA;IMP

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

UNIPROTKB|G4NFY0 MGG_08670 "Choline transporter" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 296 (109.3 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 84/293 (28%), Positives = 130/293 (44%)

Query:     6 ALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKT 65
             A T QS  +VF  +  +   TG  S P A I   +   Y+L G D   H+TEE     + 
Sbjct:   218 APTHQSTEFVFRTWINN---TGWDSAPIAFITGLVNPLYALGGLDGVTHITEEMPNPSRN 274

Query:    66 GPXXXXXXXXXXXXFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHN 125
              P             G   ++AL FS+QD++ L   S    G  +P   L+    G    
Sbjct:   275 APLAIAITLTIAFVTGVTYLVALMFSVQDYAAL---SETNTG--MPLAELFRQATGGPGG 329

Query:   126 STGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVW 185
             + G +++L +  G      +S   S  RVV+A SRD  +P S +W ++  +  VP NA  
Sbjct:   330 ALGLMMILFIALGPCV---VSSQLSTGRVVWAFSRDGALPASRVWARVSSRWGVPFNAQL 386

Query:   186 LCAAICIILGLPILKVNVVFTAIT-SICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGK 244
             L  A+  +LG   L  +  F ++  S  TI  V  Y +PI   M+   +    G F++GK
Sbjct:   387 LVTAVVALLGCLYLGSSTAFNSMLGSAVTINNVA-YLIPILTNMMTGRRNMYRGAFFMGK 445

Query:   245 ASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL 297
                 +  +   W+ +    F  P   P++ +  NY  V LG  + LI+ WW +
Sbjct:   446 WGWLVNGVTVSWLVFAIVFFSFPYTQPVTVENMNYTCVVLGGLIVLILGWWFV 498

GO:0044271 "cellular nitrogen compound biosynthetic process" evidence=IEP

ASPGD|ASPL0000007717 AN5968 [Emericella nidulans (taxid:162425)]

 Score = 297 (109.6 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 84/317 (26%), Positives = 146/317 (46%)

Query:     1 MLPLVALTTQSASYVFTHFEMSPEATGISSKP--YAVILSFLVSQYSLYGYDSAAHLTEE 58
             ++ + A TT S  +  +  E+    T ++  P   AV+++F+   +++ GYDS  HL+EE
Sbjct:   228 IIAIPAGTTNSPKFTPSR-EVWGNITNMTDYPDGVAVLMTFVAVIWTMSGYDSPFHLSEE 286

Query:    59 TKGADKTGPXXXXXXXXXXXXFGWALILALCFSIQDFSYLYDKSNETAGAFVP-AQILYD 117
                A+   P             GW L L + +++ D   +    N   G   P A  L+ 
Sbjct:   287 CSNANIASPRAIVITSGVGGLMGWFLQLVVAYTVVDIDAVL---NSDLGQ--PWASYLFQ 341

Query:   118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH 177
                 +      AI+ L ++ G  F  G     +A+RV YA +RD   PFS  W++++   
Sbjct:   342 VMSRK---GALAILALTIVCG--FSMGQGCMVAASRVTYAYARDDCFPFSKHWKRINNTT 396

Query:   178 KVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNA 237
             + P NAV L   + I++ L +   +V   A+ SI  I     + +PI  R+     +F  
Sbjct:   397 QTPVNAVILNTVLGILMCLLLFAGDVAIGALFSIGAIAQFVAFIIPIAIRVFFVGDRFRK 456

Query:   238 GPFYLGKASRPICLIAFLWICYTCSVFLLP--TFYPISWDTFNYAPVALGVGLGLIMLWW 295
             GP++LG     I  +   ++     +  LP  T   ++ D  N+  +  G  +  + +WW
Sbjct:   457 GPWHLGSFGPWIGALGVGFVLLMVPILCLPADTGSDLTPDLMNWTCLVWGGPMIAVSIWW 516

Query:   296 LLDARKWFTGPVRNIDN 312
             + DA KWF GP  N+++
Sbjct:   517 IFDAHKWFKGPKVNLEH 533

GO:0000324 "fungal-type vacuole" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

ASPGD|ASPL0000048361 AN2287 [Emericella nidulans (taxid:162425)]

 Score = 254 (94.5 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 66/197 (33%), Positives = 102/197 (51%)

Query:   112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR 171
             AQI YD   G+     GA+  + V+    FF GLS+  +A+R  +A SRD  +PFSS +R
Sbjct:   299 AQIYYDCL-GK----AGALGFMAVVAAVQFFMGLSLVVAASRQSWAFSRDGALPFSSFFR 353

Query:   172 QLHPKHKV-PSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVM 230
              +  + +  P   VW   A  I +GL  L       A+ S+   G    + +PI  R+V 
Sbjct:   354 HVSKRIRYQPVRMVWGVVAAAITIGLLCLINAAASNALFSLAVAGNDLAWLMPILCRLVW 413

Query:   231 AEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI-SWDTFNYAPVALGVGLG 289
              E +F+ G FY G+ S+PI + A +++ +   + + PT  P  + D  NY  V  G   G
Sbjct:   414 GEDRFHPGVFYTGRLSKPIAVTAVVYLSFAILLCMFPTLGPNPNPDDMNYTVVINGALWG 473

Query:   290 LIMLWWLLDARKWFTGP 306
               +L+++L ARK + GP
Sbjct:   474 GALLYYMLYARKTYKGP 490

GO:0016020 "membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00070456 amino acid transporter (538 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	317
TIGR00907	482	TIGR00907, 2A0304, amino acid permease (GABA perme	1e-68
pfam13520	425	pfam13520, AA_permease_2, Amino acid permease	3e-25
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	5e-21
TIGR03428	475	TIGR03428, ureacarb_perm, permease, urea carboxyla	7e-15
pfam00324	473	pfam00324, AA_permease, Amino acid permease	6e-07
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	6e-04

>gnl|CDD|233178 TIGR00907, 2A0304, amino acid permease (GABA permease)

 Score =  221 bits (564), Expect = 1e-68
 Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 10/306 (3%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           +L   +       +VFT+F       G     +A +L  L   +S+ GYD  AH+ EE +
Sbjct: 187 LLACKSPKFNDGKFVFTNFN--NSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIE 244

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
             +  GP AI+ ++ I  + G+   + L FS+ D   L    + T G  + AQI Y+A  
Sbjct: 245 NPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLI---SSTTGQPI-AQIFYNALG 300

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
               N  GAI LL +I  + FF  ++  T+ +R++YA SRD G+PFS +W +++P+ +VP
Sbjct: 301 ----NKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVP 356

Query: 181 SNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPF 240
            NAVWL A   I++GL  L  +  F AI S+CT+     Y +PI  ++         GPF
Sbjct: 357 LNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPF 416

Query: 241 YLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR 300
           +LGK    +  +A  W  ++  +F  P   P++ +  NYA V     L + +++W    R
Sbjct: 417 WLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGR 476

Query: 301 KWFTGP 306
           K FTGP
Sbjct: 477 KEFTGP 482

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 482

>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease

 Score =  104 bits (261), Expect = 3e-25
 Identities = 58/253 (22%), Positives = 116/253 (45%), Gaps = 17/253 (6%)

Query: 34  AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ 93
            V L  L+  +S  G++SAA+++EE K   +  P A+   + I+ +    + +     + 
Sbjct: 189 GVFLGLLIVLWSFGGFESAANVSEEVK--KRDVPKALFIGLLIVGVLYLLVNILFLGVVP 246

Query: 94  DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAAR 153
           D     D+  + +     A +L++A  G      GAII++I++  S      +   +++R
Sbjct: 247 D-----DEIAKLSNLPSVAALLFEAVGGP----WGAIIVVILLALSLLGAVNTAIVASSR 297

Query: 154 VVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 213
           V+ AL+RD  +P    + +++ K   P  A+ L A + +IL L  L     + A+ S+  
Sbjct: 298 VLEALARDGVLP--KFFAKVN-KFGSPVRALILTAILSLILLLLFLLSGAAYNALLSLSA 354

Query: 214 IGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPIS 273
           +G++  Y + I   +++   +         K   P+ ++A L+I +       P   P +
Sbjct: 355 VGYLLVYLLLIIGLLIL---RKKRPDLPRIKGRWPVAILAILFILFLLVALFFPPGGPST 411

Query: 274 WDTFNYAPVALGV 286
               NYA + + V
Sbjct: 412 GSNLNYAIILVVV 424

Length = 425

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 92.5 bits (230), Expect = 5e-21
 Identities = 55/268 (20%), Positives = 114/268 (42%), Gaps = 12/268 (4%)

Query: 34  AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ 93
            ++ + L++ ++  G+++ A L EE K   +T P AI+ S+ I+ I      L +   + 
Sbjct: 202 GILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLP 261

Query: 94  DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAAR 153
                   ++  +     A +           + GAII+ I+   S F   L+   + +R
Sbjct: 262 AGDLA---ASAPSAPLALAALFG-------GGNWGAIIIAILALLSLFGSLLAWILAVSR 311

Query: 154 VVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICT 213
           V+YA++RD  +P    + +++PK + P  A+ L   I +IL L     ++ F A+ S+ +
Sbjct: 312 VLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLAS 369

Query: 214 IGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPIS 273
           + ++  Y +   A +V+  +K +    +    +  I ++  + +             P+ 
Sbjct: 370 VAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLYALYASGLPPLL 429

Query: 274 WDTFNYAPVALGVGLGLIMLWWLLDARK 301
                 A   +   L  + L  LL A  
Sbjct: 430 LGVILIAGGIIIYLLVYLGLGRLLSAIL 457

Length = 466

>gnl|CDD|132469 TIGR03428, ureacarb_perm, permease, urea carboxylase system

 Score = 74.5 bits (183), Expect = 7e-15
 Identities = 62/256 (24%), Positives = 121/256 (47%), Gaps = 27/256 (10%)

Query: 16  FTHFEMSPEA------TGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPI 68
           FTH +  P        TG S   Y A ++S L++ Y + G+ SA  L+EETK   +  P 
Sbjct: 189 FTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPR 248

Query: 69  AILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG-AFVPAQILYDAFHGRYHNST 127
            IL+++ + ++ G  +IL    ++     L D      G  +V + +L         +S 
Sbjct: 249 TILTALSVSALGGGLMILG---ALMAAPSLTDGRLAAEGLPYVLSAVL---------DSP 296

Query: 128 GAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLC 187
              +LL+ +  +     L++ T+ +R++++++RD  +P S+   ++HP+   P     + 
Sbjct: 297 WGTVLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVI 356

Query: 188 AAICIILGLPILKVNVVFTAITSICTIGWVGGY---AVPIFARMV----MAEQKFNAGPF 240
             +CI + L  +  + +F  + S+C +     Y    VP+  R +      +Q   AG F
Sbjct: 357 GVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLF 416

Query: 241 YLGKASRPICLIAFLW 256
            LG+   P+ ++A ++
Sbjct: 417 SLGRWGLPVNILAVVY 432

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon. Length = 475

>gnl|CDD|215858 pfam00324, AA_permease, Amino acid permease

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 57/290 (19%), Positives = 103/290 (35%), Gaps = 20/290 (6%)

Query: 25  ATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL 84
           A+  +         F+++ ++  G +   +   E K   K  P AIL ++  I+IF    
Sbjct: 187 ASPGTGSFANFFSVFVIAFFAFTGIELVGNAAGEVKNPRKAIPKAILQAVWRITIFYILS 246

Query: 85  ILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGG 144
           +LA+   +      ++     A +   A      F      S  A ++  VI  +     
Sbjct: 247 LLAIGLLVP-----WNDPGLLADSASAASPFVIFFKSL-GISGLAPLINAVILTAALSAA 300

Query: 145 LSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI-CIILGLPILKVNV 203
            S   S +RV+YAL+RD   P    + +   K  VP  A+ L  AI  + + L  L   +
Sbjct: 301 NSSLYSGSRVLYALARDGLAPK---FLKKVDKSGVPLRAILLSTAISLLAVLLASLNPAI 357

Query: 204 VFTAITSICTIG----WVGGYAVPIFARMVMAEQKFNAG------PFYLGKASRPICLIA 253
           VF  + +I  +     W       +  R     Q  +                  +  + 
Sbjct: 358 VFNFLLAISGLIGLIVWGLISLSHLRFRKAFKYQGRSIDELPFKACLGPFGVILGLAALI 417

Query: 254 FLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWF 303
            + +       L     P +W   ++A + L   L LI+L  +    K +
Sbjct: 418 TILLIQALYASLPVPKPPKNWGAASFAALYLIALLFLILLIGVKLHVKNW 467

Length = 473

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 32/149 (21%), Positives = 65/149 (43%), Gaps = 14/149 (9%)

Query: 48  GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG 107
           G+++ +   EE K  ++  P AI+ S+ ++++  + L+ A+      +  L   +   + 
Sbjct: 210 GFEAISTAAEEVKNPERDIPKAIILSLIVVTLL-YVLVAAVILGAVPWRQLAGSTAPLS- 267

Query: 108 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS 167
                 + YD   G      G +IL      S     L+     +RV++A+SRD  +P S
Sbjct: 268 -----LVGYDLGQG-----IGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317

Query: 168 SIWRQLHPKHKVPSNAVWLCAAICIILGL 196
               ++HPK   P  ++ + +    +L  
Sbjct: 318 --LSKVHPKTGTPHMSIIIFSLTAALLAS 344

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
TIGR00907	482	2A0304 amino acid permease (GABA permease).	100.0
KOG1289	550	consensus Amino acid transporters [Amino acid tran	100.0
PRK15049	499	L-asparagine permease; Provisional	100.0
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	100.0
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	100.0
TIGR00913	478	2A0310 amino acid permease (yeast).	100.0
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	100.0
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	100.0
PRK10249	458	phenylalanine transporter; Provisional	100.0
PRK11357	445	frlA putative fructoselysine transporter; Provisio	100.0
PRK11387	471	S-methylmethionine transporter; Provisional	100.0
PRK10836	489	lysine transporter; Provisional	100.0
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	100.0
TIGR00906	557	2A0303 cationic amino acid transport permease.	100.0
PRK10746	461	putative transport protein YifK; Provisional	100.0
PRK10580	457	proY putative proline-specific permease; Provision	100.0
PRK10238	456	aromatic amino acid transporter; Provisional	100.0
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	100.0
PRK10655	438	potE putrescine transporter; Provisional	100.0
PRK10197	446	gamma-aminobutyrate transporter; Provisional	100.0
PRK10644	445	arginine:agmatin antiporter; Provisional	100.0
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	100.0
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	100.0
TIGR00909	429	2A0306 amino acid transporter.	99.98
COG0833	541	LysP Amino acid transporters [Amino acid transport	99.98
KOG1287	479	consensus Amino acid transporters [Amino acid tran	99.97
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	99.97
PRK15238	496	inner membrane transporter YjeM; Provisional	99.97
TIGR00911	501	2A0308 L-type amino acid transporter.	99.97
PRK11021	410	putative transporter; Provisional	99.97
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	99.97
KOG1286	554	consensus Amino acid transporters [Amino acid tran	99.96
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	99.96
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	99.95
TIGR00930	953	2a30 K-Cl cotransporter.	99.95
COG0531	466	PotE Amino acid transporters [Amino acid transport	99.95
KOG2082	1075	consensus K+/Cl- cotransporter KCC1 and related tr	99.69
KOG1288	945	consensus Amino acid transporters [Amino acid tran	99.52
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.48
TIGR00796	378	livcs branched-chain amino acid uptake carrier. tr	99.16
KOG2083	643	consensus Na+/K+ symporter [Inorganic ion transpor	98.53
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.49
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.23
PRK15132	403	tyrosine transporter TyrP; Provisional	98.15
PRK10483	414	tryptophan permease; Provisional	98.0
PHA02764	399	hypothetical protein; Provisional	97.93
TIGR00814	397	stp serine transporter. The HAAAP family includes	97.91
PRK09664	415	tryptophan permease TnaB; Provisional	97.89
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	97.61
KOG1304	449	consensus Amino acid transporters [Amino acid tran	96.96
KOG1303	437	consensus Amino acid transporters [Amino acid tran	96.77
PLN03074	473	auxin influx permease; Provisional	96.74
PRK13629	443	threonine/serine transporter TdcC; Provisional	96.64
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	96.56
PRK11375	484	allantoin permease; Provisional	96.28
KOG1305	411	consensus Amino acid transporter protein [Amino ac	96.19
PF05525	427	Branch_AA_trans: Branched-chain amino acid transpo	96.19
PRK09442	483	panF sodium/panthothenate symporter; Provisional	96.0
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	95.58
COG3949	349	Uncharacterized membrane protein [Function unknown	95.51
PF03845	320	Spore_permease: Spore germination protein; InterPr	95.31
PTZ00206	467	amino acid transporter; Provisional	94.81
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	94.5
PRK10484	523	putative transporter; Provisional	94.39
PF13906	51	AA_permease_C: C-terminus of AA_permease	94.28
PF01566	358	Nramp: Natural resistance-associated macrophage pr	93.99
PF02705	534	K_trans: K+ potassium transporter; InterPro: IPR00	93.54
COG1457	442	CodB Purine-cytosine permease and related proteins	93.43
PRK00701	439	manganese transport protein MntH; Reviewed	92.89
PRK12488	549	acetate permease; Provisional	92.69
COG1114	431	BrnQ Branched-chain amino acid permeases [Amino ac	92.5
TIGR00813	407	sss transporter, SSS family. have different number	91.97
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	91.68
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	89.32
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	88.95
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	87.57
PF06570	206	DUF1129: Protein of unknown function (DUF1129); In	87.27
COG4145	473	PanF Na+/panthothenate symporter [Coenzyme metabol	86.37
PRK09395	551	actP acetate permease; Provisional	85.54
TIGR00794	688	kup potassium uptake protein. Proteins of the KUP	85.42
COG4858	226	Uncharacterized membrane-bound protein conserved i	85.09
COG1914	416	MntH Mn2+ and Fe2+ transporters of the NRAMP famil	81.85
PLN00149	779	potassium transporter; Provisional	80.8
PRK15419	502	proline:sodium symporter PutP; Provisional	80.51

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=100.00  E-value=3.5e-40  Score=316.20  Aligned_cols=286  Identities=35%  Similarity=0.678  Sum_probs=243.9

Q ss_pred             cCcccccceeeccCCC-CCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 021145           10 QSASYVFTHFEMSPEA-TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL   88 (317)
Q Consensus        10 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~   88 (317)
                      ++.++.++++   .+. +||.+.+.+++.++....|+|.|+|.+++++||+|||+||+|||+..++.+..+++++..+..
T Consensus       196 ~~~~~~~~~~---~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~  272 (482)
T TIGR00907       196 NDGKFVFTNF---NNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVL  272 (482)
T ss_pred             CChhhhheee---eCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4455667777   444 378766778888999999999999999999999999999999999999988877666555555


Q ss_pred             HhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccc
Q 021145           89 CFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSS  168 (317)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~  168 (317)
                      ....+|.+++.+++.   ++| +.+.+.+.+    |.++...++....+++.+++.++++++.||+++++||||.+|+++
T Consensus       273 ~~~~~~~~~~~~~~~---~~p-~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP~~~  344 (482)
T TIGR00907       273 FFSMGDIDSLISSTT---GQP-IAQIFYNAL----GNKAGAIFLLCLILVTSFFCAITCMTANSRMIYAFSRDGGLPFSP  344 (482)
T ss_pred             HhcCCCHHHHhcCCC---CCh-HHHHHHHHh----CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCchH
Confidence            545545666655443   357 888888776    454567778888999999999999999999999999999999989


Q ss_pred             cceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhH
Q 021145          169 IWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP  248 (317)
Q Consensus       169 ~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (317)
                      +|+|+|||+|+|+++++++.+++.++.++..++.+.++.++++++...++.|.++..+.+++||+++++||||.+++++.
T Consensus       345 ~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~~~~~~~f~lg~~~~~  424 (482)
T TIGR00907       345 LWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGRNTIAPGPFWLGKYGFF  424 (482)
T ss_pred             hhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcchHH
Confidence            99999988899999999999999887776666678899999999999999999999888766666567889999778899


Q ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCC
Q 021145          249 ICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGP  306 (317)
Q Consensus       249 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  306 (317)
                      ++.++++++.+.++..++|...|.+..+++|....++.+++++.++|..+.||++++|
T Consensus       425 ~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~~~~~~~~~~~~~~~~~~r~~~~gp  482 (482)
T TIGR00907       425 VNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVVVFAGVLAISLVYWKYKGRKEFTGP  482 (482)
T ss_pred             HHHHHHHHHHHHHhheeCCCCCCCCcccCChHhHHHHHHHHHHHHHheEeceeeccCc
Confidence            9999999999999999999988888899999999999999999999999999999886

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=4.4e-40  Score=303.85  Aligned_cols=293  Identities=39%  Similarity=0.733  Sum_probs=272.1

Q ss_pred             ccCcccccceeeccCCCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHH
Q 021145            9 TQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILAL   88 (317)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~   88 (317)
                      .+++++.|+++   .|-+||++.++++..++....|.+.|+|++++++||+|||+|+.||+|+.++.+..++.....+.+
T Consensus       231 Fns~~~iF~~f---~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i  307 (550)
T KOG1289|consen  231 FNSGSFIFGKF---NNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGI  307 (550)
T ss_pred             CCCCceeeecc---cccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            46688999999   999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhcc-CchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcc
Q 021145           89 CFSIQ-DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFS  167 (317)
Q Consensus        89 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~  167 (317)
                      ...++ |.+.+.+++.   ++| +.+.+.+.+|+.     ....+....++..+-+..+...+.||+.|+-+|||.+|++
T Consensus       308 ~~~i~~D~~~v~ns~~---g~p-~~~i~~~~lg~k-----~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S  378 (550)
T KOG1289|consen  308 AYTIPDDLDAVLNSSL---GQP-IVQIYYQALGKK-----GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFS  378 (550)
T ss_pred             HHhccchHHHHhcCCC---CCh-HHHHHHHhcCCC-----ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCc
Confidence            99997 6667767665   789 999999999655     2366777788888889999999999999999999999999


Q ss_pred             ccceeccCCCCChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchh
Q 021145          168 SIWRQLHPKHKVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASR  247 (317)
Q Consensus       168 ~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (317)
                      ++++|+||++++|.+|+++..+++.++.++.+++...++.+.+++.+..++.|..+.+..+..+|++.++.||.++++..
T Consensus       379 ~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~a~i~l~~Ay~iP~~~rlf~~r~~f~~gp~~lGk~s~  458 (550)
T KOG1289|consen  379 KYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSAAAIALFIAYAIPIFCRLFFGRDDFRPGPFNLGKFSK  458 (550)
T ss_pred             ceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHHhheeecccccCCCCcccccccc
Confidence            99999998889999999999999999999899999999999999999999999999999888888778899999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCcccccCC
Q 021145          248 PICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNIDNE  313 (317)
Q Consensus       248 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  313 (317)
                      ++.++++.+.+++.++.++|+.+|.+.++|||+..+.+...++.+++|+..+||+.++|+.++.+|
T Consensus       459 p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~gg~~lf~li~~~~~~~k~f~gP~~~~~~~  524 (550)
T KOG1289|consen  459 PIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVYGGVMLFCLIYYFVSARKWFKGPIPSVLEE  524 (550)
T ss_pred             chHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEeehhhhhhhhheeeeecceeecCCccccccc
Confidence            999999999999999999999999999999999999999999999999999999999998877666

>PRK15049 L-asparagine permease; Provisional

Probab=100.00  E-value=1.6e-35  Score=284.21  Aligned_cols=252  Identities=14%  Similarity=0.153  Sum_probs=209.4

Q ss_pred             CCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCccc
Q 021145           27 GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETA  106 (317)
Q Consensus        27 ~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~  106 (317)
                      .|+++..+++.++...+|+|.|+|.+++++||+|||+||+|||+..++..+.++|++...+....+ |++++....    
T Consensus       214 ~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~-p~~~~~~~~----  288 (499)
T PRK15049        214 FFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLL-PWSAYQAGQ----  288 (499)
T ss_pred             cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-chhccCcCC----
Confidence            344444567788889999999999999999999999999999999999999999999999999998 677765433    


Q ss_pred             CCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHH
Q 021145          107 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL  186 (317)
Q Consensus       107 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~  186 (317)
                       .| +.+.+.+.     |.++...++.+..+++.+++.|+.+++.+|+++++||||.+|  ++|+|+| |+++|++|+++
T Consensus       289 -sP-~~~~~~~~-----g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ardg~lP--~~f~kv~-k~~~P~~Ail~  358 (499)
T PRK15049        289 -SP-FVTFFSKL-----GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMGGSAP--SFMAKMS-RQHVPYAGILA  358 (499)
T ss_pred             -CH-HHHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--HHHHHhC-CCCCCHHHHHH
Confidence             37 77776554     677788999999999999999999999999999999999999  9999999 88999999999


Q ss_pred             HHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CcCCCcccCCchhHHHHHHHHHHHHHH
Q 021145          187 CAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYTC  261 (317)
Q Consensus       187 ~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~  261 (317)
                      +.+++.+..++ ...+.+.++.+.++++...++.|.+++++.+++||+.    ++++|||.| .++..++++++++++..
T Consensus       359 ~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~-~~p~~~~~~l~~~~~~~  437 (499)
T PRK15049        359 TLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLP-GAPFTSWLTLLFLLSVL  437 (499)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCccc-CccHHHHHHHHHHHHHH
Confidence            98886654332 2455788999999999999999999999999877652    225799999 58999999999998888


Q ss_pred             HHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeecc
Q 021145          262 SVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR  300 (317)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  300 (317)
                      +..++.  .    +++++.......+.++..++|+.+|+
T Consensus       438 ~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (499)
T PRK15049        438 VLMAFD--Y----PNGTYTIAALPIIGILLVIGWFGVRK  470 (499)
T ss_pred             HHHHHc--C----cchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            777652  1    25567777777777777777765333

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=100.00  E-value=4.1e-34  Score=273.62  Aligned_cols=250  Identities=20%  Similarity=0.291  Sum_probs=206.8

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..+++.+....+|+|.|+|.+++++||+|||+||+|||+..++.++.+.|.+..++.....++.++....++   +.|  
T Consensus       212 ~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~p--  286 (475)
T TIGR03428       212 YGAFLVSGLMAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAE---GLP--  286 (475)
T ss_pred             HHHHHHHHHHHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCC---chH--
Confidence            346778888999999999999999999999999999999999999998888888877777654433322222   234  


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                       ..+.+..    |+++.. ++....+++.+++.++++.+.+|+++++||||.+|++++|+|+|||+++|++++++..+++
T Consensus       287 -~~~~~~~----g~~~~~-~~~~~~~i~~~~~~~~~~~~~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~  360 (475)
T TIGR03428       287 -YVLSAVL----DSPWGT-VLLVDVAIAILVCTLAIQTAGSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLC  360 (475)
T ss_pred             -HHHHHHh----CcHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHH
Confidence             4455555    444443 4455667899999999999999999999999999966699999999999999999999999


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------CcCCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145          192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-------FNAGPFYLGKASRPICLIAFLWICYTCSVF  264 (317)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  264 (317)
                      .++.++..++.+.|+.+.+++++...+.|.++....+.+|+++       .+++||+++++++.+++++++++++..+..
T Consensus       361 ~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~v~~  440 (475)
T TIGR03428       361 IGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMVVNL  440 (475)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            8888776777889999999999999999999887777554332       367899999999999999999999999999


Q ss_pred             hCCCCCCCCC----CCccchHHHHHHHHHHHh
Q 021145          265 LLPTFYPISW----DTFNYAPVALGVGLGLIM  292 (317)
Q Consensus       265 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  292 (317)
                      ++|...|.+.    ++|||...+++.++++..
T Consensus       441 ~~P~~~~~~~~~~~~~mny~~~~~~~~~~~~~  472 (475)
T TIGR03428       441 SWPRPEVYDPSGDGPIMLWSAPIFVGAVLLLG  472 (475)
T ss_pred             HCCCCCCCCCCCcccccchHHHHHHHHHHHHH
Confidence            9998877766    689998877777766554

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=100.00  E-value=1.3e-34  Score=277.08  Aligned_cols=261  Identities=15%  Similarity=0.146  Sum_probs=214.8

Q ss_pred             hhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhc
Q 021145           41 VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH  120 (317)
Q Consensus        41 ~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  120 (317)
                      ..+|+|.|+|.++..+||+|||+||+|||+..+..++.++|++.+++....+ |++++....      + ..+.+.+..+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~------~-~~~~~~~~~~  273 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFII-PREDISLTQ------S-LLVAFDNAFH  273 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc-CHhhccccc------c-HHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999999999888 566653321      2 3233333332


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh--
Q 021145          121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI--  198 (317)
Q Consensus       121 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~--  198 (317)
                      .. |.++...++.+...++.+++.++++.+.+|.+++++|||.+|  ++|+|+| |+|+|+++++++.+++.++.++.  
T Consensus       274 ~~-g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ardg~lP--~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~  349 (474)
T TIGR03813       274 WA-GLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAVAKAGYLP--TFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVV  349 (474)
T ss_pred             Hc-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--HHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            22 566777888888889999999999999999999999999999  9999999 88999999999998876555433  


Q ss_pred             ccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cCcCCCcccCC--c-hhHHHHHHHHHHHHHHHHhhCCCCCCCC
Q 021145          199 LKV-NVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-KFNAGPFYLGK--A-SRPICLIAFLWICYTCSVFLLPTFYPIS  273 (317)
Q Consensus       199 ~~~-~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~-~~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~  273 (317)
                      .++ .+.++.+.++++...++.|.+++.+.+++|++ ++.+||||.|.  + .+.+++++++++++.++..++|+..+.+
T Consensus       350 ~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~  429 (474)
T TIGR03813       350 MPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGT  429 (474)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecCCccchhHHHHHHHHHHHHHHheeEeCCcccCC
Confidence            223 46789999999999999999999998877754 45689999963  3 3579999999999999999999988888


Q ss_pred             CCCccchHHHHHHHHHHHhhheeeeccce--ecCCcccccCC
Q 021145          274 WDTFNYAPVALGVGLGLIMLWWLLDARKW--FTGPVRNIDNE  313 (317)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~  313 (317)
                      .++++|....+++..++..++|+.++||+  ++++..+.+.+
T Consensus       430 ~~~~ny~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  471 (474)
T TIGR03813       430 GSPTRYVGLLIGLAALFVTAPFLIYARRKPHWRDPNSNFEPF  471 (474)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhchhhcCccccccCc
Confidence            89999998888888888888888877665  66776555443

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=100.00  E-value=2.5e-34  Score=275.55  Aligned_cols=249  Identities=16%  Similarity=0.162  Sum_probs=199.1

Q ss_pred             ccccceeeccCCCCCCCCc-----hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHH
Q 021145           13 SYVFTHFEMSPEATGISSK-----PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILA   87 (317)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~-----~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~   87 (317)
                      ...++++   .++++|.++     ..++..++...+|+|.|+|.+++++||+|||+||+|||++.+..++.++|++..++
T Consensus       175 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       175 YIGFRYW---HDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             CCccccc---CCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344454   444556543     46789999999999999999999999999999999999999999999999999888


Q ss_pred             HHhhccCchh--hhcCCC--cccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCC
Q 021145           88 LCFSIQDFSY--LYDKSN--ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKG  163 (317)
Q Consensus        88 ~~~~~~~~~~--~~~~~~--~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~  163 (317)
                      ..... ++++  +.++..  +..+.| +....+ ..    |.++...++.++++++.+++.|+++++.+|+++++||||.
T Consensus       252 ~~~~~-p~~~~~l~~~~~~~~~~~~p-~~~~~~-~~----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~  324 (478)
T TIGR00913       252 IGFLV-PYNDPRLLSSSSSSDSAASP-FVIAIQ-NH----GIKVLPHIFNAVILISVLSAANSSLYASSRTLYALAHQGL  324 (478)
T ss_pred             heeec-cCCChhhcccccCCCcCCCc-HHHHHH-Hc----CCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCc
Confidence            77777 4332  323211  011246 654433 33    6677888999999999999999999999999999999999


Q ss_pred             CCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cCc
Q 021145          164 IPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ------KFN  236 (317)
Q Consensus       164 lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~------~~~  236 (317)
                      +|  ++|+|+| |+++|+++++++.+++.+..+.. ..+.+.++.+.++++...++.|.+.+++.+++||+      ++.
T Consensus       325 lP--~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~  401 (478)
T TIGR00913       325 AP--KIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLD  401 (478)
T ss_pred             cc--HHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            99  9999999 78999999999999876544422 23467899999999999999999999999877764      123


Q ss_pred             CCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCC
Q 021145          237 AGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWD  275 (317)
Q Consensus       237 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (317)
                      +||||.| .++..++++++.+++.+...++|...|.+.+
T Consensus       402 ~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  439 (478)
T TIGR00913       402 ELPYKSQ-TGPYGSYYALFFNILILIAQGYVAFAPVKFS  439 (478)
T ss_pred             cCCccCC-CcchHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence            6899998 8889999999999998888877766665433

>TIGR00908 2A0305 ethanolamine permease

Probab=100.00  E-value=8.5e-34  Score=269.32  Aligned_cols=254  Identities=15%  Similarity=0.144  Sum_probs=198.6

Q ss_pred             CCCCCCCchH-HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCC
Q 021145           24 EATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKS  102 (317)
Q Consensus        24 ~~~~~~~~~~-~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~  102 (317)
                      +.++|.+.++ +++.++..++|+|.|+|.+++++||+|||+||+|||++.++.++.++|+.......... +++++.+.+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~-~~~~l~~~~  259 (442)
T TIGR00908       181 GASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAA-DAKELMGSN  259 (442)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHhCCCc
Confidence            3445655444 78999999999999999999999999999999999999999999999998877666666 677775544


Q ss_pred             CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH
Q 021145          103 NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN  182 (317)
Q Consensus       103 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~  182 (317)
                      .     | +.+.+.+.+|   +..+...++.+..+++.+++.++.+++.+|+++++||||.+|  ++|+|+| |+|+|++
T Consensus       260 ~-----p-~~~~~~~~~g---~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~  327 (442)
T TIGR00908       260 N-----P-LPEALESIYG---GSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLP--ESLSKVN-RKKAPVL  327 (442)
T ss_pred             c-----h-HHHHHHHHhC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhC-CCCCcHH
Confidence            3     6 7788877763   224566677778888999999999999999999999999999  9999999 9999999


Q ss_pred             HHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHH
Q 021145          183 AVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTC  261 (317)
Q Consensus       183 a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~  261 (317)
                      +++++.+++.++.+  ..   ..+.+.+++++..++.|.+.+.+.+++||++ +.+||||.| .+++.++++++.+++.+
T Consensus       328 Ail~~~~i~~~~~l--~~---~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p-~~~~~~~l~~~~~~~~l  401 (442)
T TIGR00908       328 AIVVPGVIGFGLSL--TG---QTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTP-GGILTPGVALVLACVAL  401 (442)
T ss_pred             HHHHHHHHHHHHHH--hc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCC-CcchHHHHHHHHHHHHH
Confidence            99999999887665  22   2456778888899999999999998777665 448999998 66777777777776665


Q ss_pred             HHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecC
Q 021145          262 SVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTG  305 (317)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  305 (317)
                      +......        . ..+....++.++..++|++++|+++++
T Consensus       402 ~~~~~~~--------~-~~~~~~~~~~~~~~~~~~l~~~~~~~~  436 (442)
T TIGR00908       402 VTGFYVD--------P-RVVVGAVAIFVVLIGYYFLYSRHHLVS  436 (442)
T ss_pred             HHHHHcC--------h-HHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence            5443210        0 122335666667777776766555444

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=100.00  E-value=1.4e-33  Score=271.04  Aligned_cols=260  Identities=15%  Similarity=0.124  Sum_probs=202.5

Q ss_pred             HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145           35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI  114 (317)
Q Consensus        35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  114 (317)
                      .+..+...+|+|.|+|.+++.+||+|||+||+|||++.+++++.++|.+.+++....+ |++++...+.       ..+.
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~-p~~~~~~~~~-------~~~~  267 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVI-PGKEINLSAG-------VIQT  267 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheec-ChhhcccchH-------HHHH
Confidence            4455556799999999999999999999999999999999999999999888888777 5555532221       2222


Q ss_pred             HHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145          115 LYDAFHGRY-HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII  193 (317)
Q Consensus       115 ~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~  193 (317)
                      +........ +.++...++.+..+++.++++++++.+.+|.+++++|||.+|  ++|+|+| |+++|+++++++++++.+
T Consensus       268 ~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~~ardg~lP--~~~~k~n-k~~~P~~a~~~~~~i~~l  344 (507)
T TIGR00910       268 FQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFAAAQKGLLP--AAFAKMN-KHEVPVPLVIIQGIITSI  344 (507)
T ss_pred             HHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcC--HHHHhhC-cCCCcHHHHHHHHHHHHH
Confidence            222211110 125677788889999999999999999999999999999999  9999999 889999999999999887


Q ss_pred             HHhhhc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCC--c-hhHHHHHHHHHHHHHHHHhh
Q 021145          194 LGLPIL----KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGK--A-SRPICLIAFLWICYTCSVFL  265 (317)
Q Consensus       194 ~~~~~~----~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~~i~~~~~~~~~~~~~~~~  265 (317)
                      +.++..    ++...+..++++++...++.|.+.+++.+++|+|+ +.+||||.|.  + ..+++.++++.+++..+..+
T Consensus       345 ~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~  424 (507)
T TIGR00910       345 AGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISF  424 (507)
T ss_pred             HHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheee
Confidence            654332    23556778888999999999999999888776654 4589999974  2 36889999999999999999


Q ss_pred             CCCCCCCCCCCccchHHHH---HHHHHHHhhheeeeccceecC
Q 021145          266 LPTFYPISWDTFNYAPVAL---GVGLGLIMLWWLLDARKWFTG  305 (317)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~  305 (317)
                      +|+..+.....++|..+.+   +++.++..++|..++||++++
T Consensus       425 ~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  467 (507)
T TIGR00910       425 LPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHAN  467 (507)
T ss_pred             eCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence            9987776667777766554   334555667776766665544

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10249 phenylalanine transporter; Provisional

Probab=100.00  E-value=3.6e-33  Score=265.71  Aligned_cols=245  Identities=16%  Similarity=0.128  Sum_probs=207.6

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++...+..... |++++...+     .| +
T Consensus       208 ~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~-----~p-~  280 (458)
T PRK10249        208 WNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALY-PWVEVKSNS-----SP-F  280 (458)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheec-cccccCccC-----Cc-H
Confidence            3468999999999999999999999999999999999999999999999999888888887 555553332     37 8


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+.+.+.     ++++...++.+..+++.+++.|+.+++.+|+++++||||.+|  ++|+|+| |+|+|++|++++.+++
T Consensus       281 ~~~~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~~P~~All~~~~i~  352 (458)
T PRK10249        281 VMIFHNL-----DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAP--KFLTRVS-RRGVPINSLMLSGAIT  352 (458)
T ss_pred             HHHHHHc-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcC--HHHHHhC-CCCCCHHHHHHHHHHH
Confidence            7777765     466788888889999999999999999999999999999999  9999999 7799999999999999


Q ss_pred             HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCC
Q 021145          192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ---KFNAGPFYLGKASRPICLIAFLWICYTCSVFLLP  267 (317)
Q Consensus       192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  267 (317)
                      .+..++. ..+.+.++.+.++++...++.|.+++.+.+++||+   +.+++|||.| +++..++++++++.+..+...  
T Consensus       353 ~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~-~~p~~~~~~l~~~~~~~v~~~--  429 (458)
T PRK10249        353 SLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKAL-LYPFGNYLCIAFLGMILLLMC--  429 (458)
T ss_pred             HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC-CccHHHHHHHHHHHHHHHHHH--
Confidence            8777653 55678899999999999999999999999977753   3346899987 899999999999988877764  


Q ss_pred             CCCCCCCCCccchHHHHHHHHHHHhhheeeec
Q 021145          268 TFYPISWDTFNYAPVALGVGLGLIMLWWLLDA  299 (317)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~  299 (317)
                           ..+++++.....++++++..+.|..++
T Consensus       430 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~  456 (458)
T PRK10249        430 -----TMDDMRLSAILLPVWIVFLFVAFKTLR  456 (458)
T ss_pred             -----HcchHHHHHHHHHHHHHHHHHHHHhee
Confidence                 345677877777777776666665544

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=100.00  E-value=4.2e-33  Score=264.76  Aligned_cols=246  Identities=15%  Similarity=0.088  Sum_probs=195.0

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..++..++..++|+|.|||.+++++||+|||+||+|||+..++.++.++|++.+.+..... |++++.+++.     | +
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~  266 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLM-PFDKLANSET-----P-I  266 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCCc-----h-H
Confidence            3468899999999999999999999999999999999999999999999999999998888 7888866544     6 7


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+.+++. +.  .+++...++.+..+++.+++.++++.+.+|++++++|||.+|  ++|+|+|||+|+|+++++++.+++
T Consensus       267 ~~~~~~~-~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp--~~~~~v~~~~~tP~~a~l~~~~~~  341 (445)
T PRK11357        267 SDALTWI-PA--LGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF--KCFGHVHPKYNTPDVSIILQGALG  341 (445)
T ss_pred             HHHHHHH-Hh--cchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCch--HHHHHhCCCCCCCHHHHHHHHHHH
Confidence            6776653 10  134456677778888999999999999999999999999999  999999999999999999999999


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCC
Q 021145          192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYP  271 (317)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  271 (317)
                      .++.+  .   ..++.+.+.......+.|.+...+.+++||+++.+||||.| ..+.+++++++.+++..+.....    
T Consensus       342 ~~~~~--~---~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~~~~~~k~p-~~~~~~~~~~~~~~~~~~~~~~~----  411 (445)
T PRK11357        342 IFFIF--V---SDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDDYKPLWRTP-AFGLMTTLAIASSLILVASTFVW----  411 (445)
T ss_pred             HHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCCCCCcccC-CchHHHHHHHHHHHHHHHHHHHc----
Confidence            87765  2   24667777888888888998888888777777778899999 66777777777666665433211    


Q ss_pred             CCCCCccchHHHHHHHHHHHhhheeeecccee
Q 021145          272 ISWDTFNYAPVALGVGLGLIMLWWLLDARKWF  303 (317)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (317)
                         +.. ..+....++.+++...|+.++||++
T Consensus       412 ---~~~-~~~~~~~~~~~~g~~~y~~~~~~~~  439 (445)
T PRK11357        412 ---API-PGLICAVIVIATGLPAYAFWAKRSR  439 (445)
T ss_pred             ---CcH-HHHHHHHHHHHHhhhHHhheechhh
Confidence               111 1223455666667776766665543

>PRK11387 S-methylmethionine transporter; Provisional

Probab=100.00  E-value=4.9e-33  Score=265.91  Aligned_cols=253  Identities=15%  Similarity=0.171  Sum_probs=196.8

Q ss_pred             CCCC-CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145           26 TGIS-SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE  104 (317)
Q Consensus        26 ~~~~-~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~  104 (317)
                      ++|. ++..+++.++..++|+|.|+|.+++.+||+|||+||+|||+..++.++.++|++.+++..... |+++....++ 
T Consensus       198 ~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~~~~~~~-  275 (471)
T PRK11387        198 EGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALI-PMQQAGVEKS-  275 (471)
T ss_pred             CCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-CccccCccCC-
Confidence            4553 334578899999999999999999999999999999999999999999999999999888888 5665543333 


Q ss_pred             ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145          105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV  184 (317)
Q Consensus       105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~  184 (317)
                          | +.+.+++.     |+++...++.+..+++.+++.|+++++.+|++++|||||.+|  ++|+|+| |+++|++++
T Consensus       276 ----p-~~~~~~~~-----g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~f~~~~-~~~~P~~Ai  342 (471)
T PRK11387        276 ----P-FVLVFEKV-----GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEGTLP--ACFARLT-KRGIPLTAL  342 (471)
T ss_pred             ----h-HHHHHHHc-----CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCcC--HHHHHhC-CCCCcHHHH
Confidence                6 77766654     677888999999999999999999999999999999999999  9999999 779999999


Q ss_pred             HHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC------cCCCcccCCchhHHHHHHHHHH
Q 021145          185 WLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF------NAGPFYLGKASRPICLIAFLWI  257 (317)
Q Consensus       185 ~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~------~~~~~~~~~~~~~i~~~~~~~~  257 (317)
                      +++.+++++..+.. ..+++.++.+.+++++..++.|++.+++.+++||+++      .+||||.| ..+.+++++++.+
T Consensus       343 l~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  421 (471)
T PRK11387        343 SVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAP-WYPLTPILGFVLC  421 (471)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCC-CccHHHHHHHHHH
Confidence            98877665444322 3446778889999999999999999999887776542      24789998 6677777777777


Q ss_pred             HHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccc
Q 021145          258 CYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK  301 (317)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  301 (317)
                      ++.++...+.   +   .. .........+++++...|..++|+
T Consensus       422 ~~~~~~~~~~---~---~~-~~~~~~~~~~~~~~~~~~~~~~~~  458 (471)
T PRK11387        422 LLACVGLAFD---P---SQ-RIALWCGIPFVALCYGAYYLTQRL  458 (471)
T ss_pred             HHHHHHHHhh---H---HH-HHHHHHHHHHHHHHHHHHHHhccc
Confidence            6666543211   1   11 122334445555566666555554

>PRK10836 lysine transporter; Provisional

Probab=100.00  E-value=7.6e-33  Score=265.68  Aligned_cols=221  Identities=17%  Similarity=0.136  Sum_probs=181.2

Q ss_pred             HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhh---hcCCCcccCCc
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYL---YDKSNETAGAF  109 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~---~~~~~~~~~~p  109 (317)
                      .+++.+....+|+|.|||.+++.+||+|||+||+|||+..++..+.++|++...+....+ ++++.   .+...+..+.|
T Consensus       205 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~v-p~~~~~~~~~~~~~~~~sp  283 (489)
T PRK10836        205 AAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLII-PYTDPSLLRNDVKDISVSP  283 (489)
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheec-CCCChhhhccccccccCCc
Confidence            356666666789999999999999999999999999999999999999999999988888 44332   22111111346


Q ss_pred             hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145          110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA  189 (317)
Q Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~  189 (317)
                       +...+.+.     |.++...++.+.++++.+++.|+.+++.+|+++++||||.+|  ++|+|+| |+|+|++|++++.+
T Consensus       284 -~~~~~~~~-----g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a~Ardg~lP--~~~~kv~-~~~~P~~All~~~~  354 (489)
T PRK10836        284 -FTLVFQHA-----GLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAP--RIFAKLS-RGGVPRNALYATTV  354 (489)
T ss_pred             -HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-CCCCcHHHHHHHHH
Confidence             66666554     556678899999999999999999999999999999999999  9999999 77999999999999


Q ss_pred             HHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-----cCc-CCCcccCCchhHHHHHHHHHHHHHHH
Q 021145          190 ICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ-----KFN-AGPFYLGKASRPICLIAFLWICYTCS  262 (317)
Q Consensus       190 i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~  262 (317)
                      ++.+..+.. .++...++++.+++++..++.|...+++.+++||+     ++. +||||.| ..+..++++++.+++.+.
T Consensus       355 ~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p-~~p~~~~~~~~~~~~~~~  433 (489)
T PRK10836        355 IAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSG-FFPLGPIFAFVLCLIITL  433 (489)
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCC-CccHHHHHHHHHHHHHHH
Confidence            988777643 44466788999999999999999999999988874     222 4799998 677888888888777765


Q ss_pred             Hh
Q 021145          263 VF  264 (317)
Q Consensus       263 ~~  264 (317)
                      ..
T Consensus       434 ~~  435 (489)
T PRK10836        434 GQ  435 (489)
T ss_pred             HH
Confidence            43

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=100.00  E-value=6e-33  Score=265.07  Aligned_cols=229  Identities=15%  Similarity=0.196  Sum_probs=188.6

Q ss_pred             CCCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcC
Q 021145           23 PEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDK  101 (317)
Q Consensus        23 ~~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~  101 (317)
                      .+.++|.+++ .+++.++...+|+|.|+|.+++++||+|||+||+||++..+.+.+.++|++.+....... |++++.+.
T Consensus       200 ~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~  278 (469)
T PRK11049        200 WNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVT-PWSSVVPD  278 (469)
T ss_pred             CCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeec-CccccCcc
Confidence            3444443333 369999999999999999999999999999999999999888899999999999888777 77777554


Q ss_pred             CCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChH
Q 021145          102 SNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS  181 (317)
Q Consensus       102 ~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~  181 (317)
                      ++     | +.+.+.+.     |.++...++.+..+++.+++.|+.+.+.+|++++++|||.+|  ++|+|+| |+|+|+
T Consensus       279 ~~-----p-~~~~~~~~-----g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~kv~-~~~tP~  344 (469)
T PRK11049        279 KS-----P-FVELFVLV-----GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAP--KAFAKLS-KRAVPA  344 (469)
T ss_pred             CC-----c-HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC--HHHHhhC-CCCCCH
Confidence            43     6 76766544     667788899999999999999999999999999999999999  9999999 569999


Q ss_pred             HHHHHHHHHHHHHHh-hhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---CCCcccCCchhHHHHHHHH
Q 021145          182 NAVWLCAAICIILGL-PILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN---AGPFYLGKASRPICLIAFL  255 (317)
Q Consensus       182 ~a~~~~~~i~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~  255 (317)
                      +++++++++..+..+ ....+  .+.++.+.+++++...+.|.+++.+.+++||++++   ++|||.| .+++.++++++
T Consensus       345 ~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p-~~~~~~~~~~~  423 (469)
T PRK11049        345 KGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMP-LGKLMCWVCMA  423 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCc-CcchHHHHHHH
Confidence            999999887654332 22222  35789999999999999999999999977776433   2689998 78888988888


Q ss_pred             HHHHHHHHhhCC
Q 021145          256 WICYTCSVFLLP  267 (317)
Q Consensus       256 ~~~~~~~~~~~~  267 (317)
                      .+++.++....+
T Consensus       424 ~~~~~~~~~~~~  435 (469)
T PRK11049        424 FFAFVLVLLTLE  435 (469)
T ss_pred             HHHHHHHHHHHc
Confidence            888887665544

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=100.00  E-value=1.1e-32  Score=267.13  Aligned_cols=246  Identities=17%  Similarity=0.190  Sum_probs=205.7

Q ss_pred             CCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145           26 TGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE  104 (317)
Q Consensus        26 ~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~  104 (317)
                      ++|.+.+ .+++.++..++|+|.|||.+++++||+|||+||+||+++.++.+++++|+++++++.... +++++ +.+. 
T Consensus       223 ~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~v-p~~~l-~~~~-  299 (557)
T TIGR00906       223 GGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMM-PYYLL-DPDA-  299 (557)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccc-cHHHh-CcCc-
Confidence            3454433 468999999999999999999999999999999999999999999999999999999998 67665 3332 


Q ss_pred             ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145          105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV  184 (317)
Q Consensus       105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~  184 (317)
                          | +.+.+.+.     |.++...++.++.+.+.++++++.+++.+|++++|||||.+|  ++|+|+|||+++|++++
T Consensus       300 ----p-~~~a~~~~-----g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~amarDGlLP--~~fakv~~r~~tP~~Ai  367 (557)
T TIGR00906       300 ----P-FPVAFEYV-----GWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYAMARDGLLF--KWLAQINSKTKTPINAT  367 (557)
T ss_pred             ----H-HHHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc--HHHhccCCCCCCcHHHH
Confidence                5 66655543     667788899999999999999999999999999999999999  99999999999999999


Q ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc------------------------------
Q 021145          185 WLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK------------------------------  234 (317)
Q Consensus       185 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~------------------------------  234 (317)
                      ++.++++.++.++.     .++.+.++.+++.++.|.+.+++.+++|+++                              
T Consensus       368 l~~~iv~~il~~~~-----~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (557)
T TIGR00906       368 VVSGAIAALMAFLF-----DLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQS  442 (557)
T ss_pred             HHHHHHHHHHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccccc
Confidence            99999998776622     3567888888899999999998888777432                              


Q ss_pred             -------------------------------------------------------Cc--CCCcccCCchhHHHHHHHHHH
Q 021145          235 -------------------------------------------------------FN--AGPFYLGKASRPICLIAFLWI  257 (317)
Q Consensus       235 -------------------------------------------------------~~--~~~~~~~~~~~~i~~~~~~~~  257 (317)
                                                                             +.  +|+||.| ..|.++.++...+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p-~~p~~p~~~i~~~  521 (557)
T TIGR00906       443 EGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVP-LVPFLPALSILIN  521 (557)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCC-CchHHHHHHHHHH
Confidence                                                                   11  5678888 7788888888888


Q ss_pred             HHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145          258 CYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT  304 (317)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  304 (317)
                      ++++.-.        +    ..++..+.+|..+|.+.|+.|.+||.+
T Consensus       522 ~~l~~~l--------~----~~~~~~~~~w~~~g~~~y~~yg~~~s~  556 (557)
T TIGR00906       522 IFLMVQL--------D----ADTWVRFAIWMAIGFLIYFLYGIRHSL  556 (557)
T ss_pred             HHHHHcC--------C----HHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            8875433        1    136689999999999999999988765

>PRK10746 putative transport protein YifK; Provisional

Probab=100.00  E-value=1.6e-32  Score=261.21  Aligned_cols=263  Identities=15%  Similarity=0.099  Sum_probs=202.3

Q ss_pred             cccceeeccCCCCCCCC-chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145           14 YVFTHFEMSPEATGISS-KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI   92 (317)
Q Consensus        14 ~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~   92 (317)
                      ..|+++   .+.+++.+ +..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+
T Consensus       183 ~~~~~~---~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~  259 (461)
T PRK10746        183 IGFSNL---TEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIF  259 (461)
T ss_pred             Cccccc---cCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeee
Confidence            346666   44444433 34578899999999999999999999999999999999999999999999999988888888


Q ss_pred             cCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcccccee
Q 021145           93 QDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ  172 (317)
Q Consensus        93 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~  172 (317)
                       |++++..++     .| +.+.+.+.     |.+....++.+.++.+.+++.|+.+++.||+++++||||.+|  ++|+|
T Consensus       260 -p~~~~~~~~-----sp-~v~~~~~~-----g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~lP--~~~~~  325 (461)
T PRK10746        260 -PWNEIGSNG-----SP-FVLTFAKI-----GITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLP--AAMAK  325 (461)
T ss_pred             -CCCCCCCCC-----Cc-HHHHHHHh-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHH
Confidence             777775433     37 87777665     666677889999999999999999999999999999999999  99999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHhh---hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---cCCCcccCCch
Q 021145          173 LHPKHKVPSNAVWLCAAICIILGLP---ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF---NAGPFYLGKAS  246 (317)
Q Consensus       173 ~~~r~~~P~~a~~~~~~i~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~---~~~~~~~~~~~  246 (317)
                      +| |+|+|++++++..+...+....   .....+.++.+.+++++..++.|...+++.+++||+++   +++|||.| +.
T Consensus       326 ~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~-~~  403 (461)
T PRK10746        326 VS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSI-LF  403 (461)
T ss_pred             hC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCC-Cc
Confidence            99 8899999999876544332211   12236679999999999999999999999998887654   36789977 77


Q ss_pred             hHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145          247 RPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW  302 (317)
Q Consensus       247 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (317)
                      +...+++++.+++..+...+..+      . .........++++..+.|..+++.+
T Consensus       404 p~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~y~~~~~~~  452 (461)
T PRK10746        404 PWANYLTMAFLICVLIGMYFNED------T-RMSLFVGIIFLLAVTLIYKVFGLNR  452 (461)
T ss_pred             cHHHHHHHHHHHHHHHHHHHCcc------H-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            78888877777776555432111      0 1122344444555556665544433

>PRK10580 proY putative proline-specific permease; Provisional

Probab=100.00  E-value=3.1e-32  Score=259.49  Aligned_cols=251  Identities=14%  Similarity=0.149  Sum_probs=201.4

Q ss_pred             CCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc
Q 021145           26 TGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET  105 (317)
Q Consensus        26 ~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~  105 (317)
                      +.|+++..+++.++..++|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..+...... |++++...+   
T Consensus       192 ~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~-p~~~i~~~~---  267 (457)
T PRK10580        192 GFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIY-PWNQVGTNG---  267 (457)
T ss_pred             CCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ccCCCCccC---
Confidence            3454444578999999999999999999999999999999999999999999999999988887777 677765433   


Q ss_pred             cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHH
Q 021145          106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVW  185 (317)
Q Consensus       106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~  185 (317)
                        .| +...+. ..    |.++...++.+..+.+.+++.|+++.+.+|+++++||||.+|  ++|+|+| |+|+|+++++
T Consensus       268 --~p-~~~~~~-~~----g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~kv~-~~~~P~~Ai~  336 (457)
T PRK10580        268 --SP-FVLTFQ-HM----GITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAP--KIFSKTS-RRGIPWVTVL  336 (457)
T ss_pred             --Ch-HHHHHH-Hc----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhhC-CCCCcHHHHH
Confidence              36 655553 33    666777888888899999999999999999999999999999  9999999 6899999999


Q ss_pred             HHHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----CcCCCcccCCchhHHHHHHHHHHHHH
Q 021145          186 LCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK----FNAGPFYLGKASRPICLIAFLWICYT  260 (317)
Q Consensus       186 ~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~  260 (317)
                      ++.++..+.... ...+.+.++.+.+++++..++.|.+++.+.+++||+.    .+++|||.| .++..++++++++++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~-~~~~~~~~~~~~~~~~  415 (457)
T PRK10580        337 VMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVP-GGVATTIGGLIFLVFI  415 (457)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccC-CccHHHHHHHHHHHHH
Confidence            998765543332 2344677899999999999999999999999888763    234689998 8899999999999888


Q ss_pred             HHHh-hCCCCCCCCCCCccchHHHHHHHHHHHhhheeeecc
Q 021145          261 CSVF-LLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDAR  300 (317)
Q Consensus       261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  300 (317)
                      +... ++|.        ..........+++++.+.|..++|
T Consensus       416 ~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~  448 (457)
T PRK10580        416 IGLIGYHPD--------TRISLYVGFAWIVLLLIGWMFKRR  448 (457)
T ss_pred             HHHHHHCcc--------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            7665 4331        123445666667777777766543

>PRK10238 aromatic amino acid transporter; Provisional

Probab=100.00  E-value=2.1e-32  Score=260.32  Aligned_cols=228  Identities=16%  Similarity=0.169  Sum_probs=193.3

Q ss_pred             CCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCC
Q 021145           24 EATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKS  102 (317)
Q Consensus        24 ~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~  102 (317)
                      +.++|.+++ .++..++...+|+|.|+|.+++.+||+|||+||+|||+..++..+.+.|++......... |++++.+++
T Consensus       190 ~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~-p~~~l~~~~  268 (456)
T PRK10238        190 DQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLM-PWTRVTADT  268 (456)
T ss_pred             CCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheec-ChhccCCCC
Confidence            345674433 367788888999999999999999999999999999999999999999998877777666 777774433


Q ss_pred             CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH
Q 021145          103 NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN  182 (317)
Q Consensus       103 ~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~  182 (317)
                           .| +.+.+.+.     |.++...++...++.+.+++.|+++++.+|+++++||||.+|  ++|+|+| |+|+|++
T Consensus       269 -----sP-~~~~~~~~-----g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP--~~f~kv~-~~~~P~~  334 (456)
T PRK10238        269 -----SP-FVLIFHEL-----GDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP--KALASVD-KRGVPVN  334 (456)
T ss_pred             -----Cc-HHHHHHHc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCcHH
Confidence                 37 77776655     667788889999999999999999999999999999999999  9999999 6799999


Q ss_pred             HHHHHHHHHHHHHhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc---CCCcccCCchhHHHHHHHHHHH
Q 021145          183 AVWLCAAICIILGLP-ILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN---AGPFYLGKASRPICLIAFLWIC  258 (317)
Q Consensus       183 a~~~~~~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~  258 (317)
                      |++++.+++.+..+. +..+.+.++.+.++++...++.|.+++.+.+++||++++   +++|+.| +++..++++++++.
T Consensus       335 Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~  413 (456)
T PRK10238        335 TILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPAL-LYPLGNWICLLFMA  413 (456)
T ss_pred             HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CccHHHHHHHHHHH
Confidence            999999998877665 356688999999999999999999999999988876543   3455655 89999999999999


Q ss_pred             HHHHHhhCC
Q 021145          259 YTCSVFLLP  267 (317)
Q Consensus       259 ~~~~~~~~~  267 (317)
                      +.++..++.
T Consensus       414 ~~~~~~~~~  422 (456)
T PRK10238        414 AVLVIMLMT  422 (456)
T ss_pred             HHHHHHHHc
Confidence            998877553

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=100.00  E-value=5.9e-32  Score=257.36  Aligned_cols=262  Identities=17%  Similarity=0.177  Sum_probs=203.9

Q ss_pred             ccceeeccCCCCCCCCch-HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145           15 VFTHFEMSPEATGISSKP-YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQ   93 (317)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~   93 (317)
                      .++++   .+.++|.+++ .++..++...+|+|.|+|.+++++||+|||+||+|||+..+...+.++|++......... 
T Consensus       185 ~~~~~---~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~-  260 (452)
T TIGR01773       185 GFSNL---TGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALL-  260 (452)
T ss_pred             ccccc---cCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEe-
Confidence            34555   4445554444 469999999999999999999999999999999999999999999999999888777777 


Q ss_pred             CchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceec
Q 021145           94 DFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQL  173 (317)
Q Consensus        94 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~  173 (317)
                      |+++....+.    .| +.+...+.     |+++...++.+..+++.+++.|+.+++.+|.++++||||.+|  ++|+|+
T Consensus       261 p~~~~~~~~~----~p-~~~~~~~~-----g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lP--~~~~~v  328 (452)
T TIGR01773       261 PWNSPNLLEV----GS-YVAVLELL-----GIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGDAP--RVFMKL  328 (452)
T ss_pred             CCCCcccccC----Cc-HHHHHHHc-----CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC--HHHHhh
Confidence            4443321111    15 65554433     667788888899999999999999999999999999999999  999999


Q ss_pred             cCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCC-chhHHH
Q 021145          174 HPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGK-ASRPIC  250 (317)
Q Consensus       174 ~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~i~  250 (317)
                      | |+++|+++++++.+++.+..++. ..+++.++.+.+.++...++.|.+.+.+.+++||+. +.+|||+.+. .++.++
T Consensus       329 ~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~  407 (452)
T TIGR01773       329 N-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLT  407 (452)
T ss_pred             C-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHH
Confidence            9 78999999999999988776653 234678899999999899999999999988777664 3356666654 478888


Q ss_pred             HHHHHHHHHHHHHhh-CCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccc
Q 021145          251 LIAFLWICYTCSVFL-LPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARK  301 (317)
Q Consensus       251 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  301 (317)
                      +++++.+++.++... .|.        ..+.......+.+....+|+.++||
T Consensus       408 ~~~~~~~~~~~~~~~~~p~--------~~~~~~~~~~~~~~~~~~y~~~~~~  451 (452)
T TIGR01773       408 WLVIIFICGILVSMLFIPS--------MRDEVLLTGLLTIIVLCSYLVFARR  451 (452)
T ss_pred             HHHHHHHHHHHHHHHHccc--------ccHHHHHHHHHHHHHHHHHHHhhcc
Confidence            888888888877763 332        1244556666666666667665554

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10655 potE putrescine transporter; Provisional

Probab=100.00  E-value=6.8e-32  Score=256.01  Aligned_cols=241  Identities=15%  Similarity=0.120  Sum_probs=189.6

Q ss_pred             HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA  112 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  112 (317)
                      .++..++...+|+|.|||.+++++||+|||+||+|||+..+..+++++|++.+.+..... |.+++.+++.     | +.
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~~  261 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIV-PNMELANSTA-----P-FG  261 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhhccc-----h-HH
Confidence            467888999999999999999999999999999999999999999999999988888887 6777755443     6 77


Q ss_pred             HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145          113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI  192 (317)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~  192 (317)
                      +.+.+.+     +++...++.+..+++.+++.++++.+.+|++++++|||.+|  ++|+|+| |+++|+++++++.+++.
T Consensus       262 ~~~~~~~-----g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~v~-~~~tP~~all~~~~i~~  333 (438)
T PRK10655        262 LAFAQMF-----NPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFP--KIFSRVT-KVDAPVQGMLIIVVIQS  333 (438)
T ss_pred             HHHHHHc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh--HHHHhhC-cCCCCHHHHHHHHHHHH
Confidence            7777765     45567788888899999999999999999999999999999  9999999 77999999999999887


Q ss_pred             HHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145          193 ILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF  269 (317)
Q Consensus       193 ~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  269 (317)
                      ++.+....+  .+.++.+.++.++...+.|.+++++.+++|||+ +.+||||.+   ..++.++.+.+++.....     
T Consensus       334 ~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----  405 (438)
T PRK10655        334 LLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVA---NFIAFVGALYSFYALYSS-----  405 (438)
T ss_pred             HHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH---HHHHHHHHHHHHHHHHHh-----
Confidence            766543322  467999999999999999999999998777654 446777754   355555555554432211     


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhhheeeecccee
Q 021145          270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKWF  303 (317)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  303 (317)
                            .. .......++++++..+|.+++||+.
T Consensus       406 ------~~-~~~~~~~~~~~~g~~~y~~~~~~~~  432 (438)
T PRK10655        406 ------GE-EAMLYGSIVTFLGWTLYGLISPRFE  432 (438)
T ss_pred             ------hH-HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                  00 1223345666667777755444443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=100.00  E-value=3.1e-31  Score=251.71  Aligned_cols=222  Identities=19%  Similarity=0.130  Sum_probs=186.3

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..++..++...+|+|.|+|.+++.+||+|||+||+|||+..+...+.++|++..++....+ |+++. +.+.   ..+ +
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~-p~~~~-~~~~---~~~-~  253 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALI-PWNMP-GLKA---VGS-Y  253 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheec-CcCcc-cccc---cCc-H
Confidence            3479999999999999999999999999999999999999999999999999999988888 56543 2211   113 4


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      ....+..     |+++...++.+.++++.+++.|+++++.+|+++++||||.+|  ++|+|+| |+|+|+++++++.+++
T Consensus       254 ~~~~~~~-----g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~Ail~~~~~~  325 (446)
T PRK10197        254 RSVLELL-----NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAP--AVMGKIN-RSKTPYVAVLLSTGAA  325 (446)
T ss_pred             HHHHHHc-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC--HHHHhhC-cCCCcHHHHHHHHHHH
Confidence            3434333     677788999999999999999999999999999999999999  9999999 8899999999998887


Q ss_pred             HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--c-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCC
Q 021145          192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQ--K-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLP  267 (317)
Q Consensus       192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  267 (317)
                      .+..+.. ..+.+.++.+.++++...++.|.+.+.+.+++||+  + +.+++||.| +++..++++++++++.++...++
T Consensus       326 ~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~-~~p~~~~~~i~~~~~~~~~~~~~  404 (446)
T PRK10197        326 FLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMW-LYPWLTWLVIGFITFVLVVMLFR  404 (446)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCC-CcchHHHHHHHHHHHHHHHHHHC
Confidence            7665543 23356799999999999999999999999988875  2 336788887 78899999999888888776655


Q ss_pred             C
Q 021145          268 T  268 (317)
Q Consensus       268 ~  268 (317)
                      +
T Consensus       405 ~  405 (446)
T PRK10197        405 P  405 (446)
T ss_pred             c
Confidence            3

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=100.00  E-value=4.1e-31  Score=251.08  Aligned_cols=212  Identities=18%  Similarity=0.146  Sum_probs=178.9

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..++..++...+|+|.|+|.+++++||+|||+||+|||++.++.+++++|++..++....+ +.+++..++.     | +
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~-~~~~l~~~~~-----p-~  262 (445)
T PRK10644        190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMI-PNAALRVSAS-----P-F  262 (445)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcCCC-----h-H
Confidence            3467788899999999999999999999999999999999999999999999999999888 6667654433     7 7


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+.+++.+     +++...++.++.+++.+++.++++...+|.+++++|||.+|  ++|+|+| |+++|+++++++++++
T Consensus       263 ~~~~~~~~-----g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP--~~~~~v~-~~~tP~~Ai~~~~~i~  334 (445)
T PRK10644        263 GDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLLIVGVLM  334 (445)
T ss_pred             HHHHHHHh-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHHH
Confidence            78777775     35567788888889999999999999999999999999999  9999999 6799999999999998


Q ss_pred             HHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145          192 IILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS  262 (317)
Q Consensus       192 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  262 (317)
                      .++.+....+  .+.++.+.+++++..++.|.+++.+.+++|||+++   ++.| ..+.+++++++.+++.+.
T Consensus       335 ~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~---~~~p-~~~~~~~~~~~~~~~~~~  403 (445)
T PRK10644        335 TIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFG---KARP-AYLAVTLIAFVYCIWAVV  403 (445)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc---cccc-chhHHHHHHHHHHHHHHH
Confidence            8766543322  35799999999999999999999999877776543   1223 456788888888887764

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=100.00  E-value=2e-31  Score=252.41  Aligned_cols=243  Identities=15%  Similarity=0.091  Sum_probs=194.8

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      +..++..++..++|+|.|+|.+++.+||+|||+||+|||+..+..++.++|++.+++....+ |++++.+++.     | 
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~-p~~~~~~~~~-----p-  257 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMF-PASVMAASGA-----P-  257 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcCCC-----c-
Confidence            35679999999999999999999999999999999999999999999999999999999888 7888755444     7 


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI  190 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i  190 (317)
                      +.+.+++.     ++++...+++++.+++.+++.|++++..+|..++++|||.+|  |+|+|+| |+|+|++++++++++
T Consensus       258 ~~~~~~~~-----~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP--~~f~k~n-k~g~P~~Al~~~~~~  329 (435)
T PRK10435        258 FAISASTI-----LGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFP--KVYGEVD-KNGIPKKGLLLAAVK  329 (435)
T ss_pred             HHHHHHHH-----hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-cCCCCHHHHHHHHHH
Confidence            87777666     467788888988999999999999999999999999999999  9999999 889999999999888


Q ss_pred             HHHHHhhh----cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHH
Q 021145          191 CIILGLPI----LK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSV  263 (317)
Q Consensus       191 ~~~~~~~~----~~---~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  263 (317)
                      +.++....    ..   ..+.++.+.++++...++.|++.+.+.+++||++     +|.+ ..+.++.++++++++.+..
T Consensus       330 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~  403 (435)
T PRK10435        330 MTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGVN-----IRNF-VSLICSVLGCVFCFIALMG  403 (435)
T ss_pred             HHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----hhHH-HHHHHHHHHHHHHHHHHHH
Confidence            76544321    11   2578999999999999999999999988554422     2222 3456677776666665431


Q ss_pred             hhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCccc
Q 021145          264 FLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRN  309 (317)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  309 (317)
                      .               .+..+..++.++.+.|+.|.|||++++.++
T Consensus       404 ~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (435)
T PRK10435        404 A---------------SSFELAGTFIVSLIILMFYARKMHERQSHS  434 (435)
T ss_pred             h---------------hHHHHHHHHHHHHHHHHHHHHHhcchhccc
Confidence            1               224555666666666667777777665543

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-32  Score=247.20  Aligned_cols=266  Identities=17%  Similarity=0.182  Sum_probs=225.0

Q ss_pred             ccccceeeccCCCCCCCCchH-HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 021145           13 SYVFTHFEMSPEATGISSKPY-AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFS   91 (317)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~   91 (317)
                      +..+++.   .+++||.|.++ +++.++...+|+|.|.|.++..++|+|||+|.+|||+-..+..+.++|+....+...+
T Consensus       185 ~~g~snl---~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l  261 (462)
T COG1113         185 AAGFSNL---WDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSL  261 (462)
T ss_pred             Ccccccc---ccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHhee
Confidence            5678887   77888666555 8999999999999999999999999999999999999999999999999999999989


Q ss_pred             ccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccce
Q 021145           92 IQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWR  171 (317)
Q Consensus        92 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~  171 (317)
                      . ||+++...++     | +...+...     |-++...++++.++.+.+++.|+.+++.+|++|++|+||..|  |.++
T Consensus       262 ~-PW~~~~~~~S-----P-FV~~f~~i-----Gi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~AP--k~~~  327 (462)
T COG1113         262 Y-PWNQIGEDGS-----P-FVTVFSLI-----GIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAP--KAFA  327 (462)
T ss_pred             c-cccccCCCCC-----c-HHHHHHHc-----CCcccccceeEEEeechhhcccccccccchHHHHHhhcCccc--HhHh
Confidence            8 8998866554     8 88888776     888899999999999999999999999999999999999999  9999


Q ss_pred             eccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---CcCCCcccCCchh
Q 021145          172 QLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK---FNAGPFYLGKASR  247 (317)
Q Consensus       172 ~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~---~~~~~~~~~~~~~  247 (317)
                      |+| |+|.|+++++++.+...+.+++. ..+.+.|+.+++.++...+..|.+++++.+++||++   .++.+||+| .++
T Consensus       328 kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~~~fkm~-~~p  405 (462)
T COG1113         328 KLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKKLKFKMP-LYP  405 (462)
T ss_pred             hcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccCcccccc-ccc
Confidence            999 88999999999998887777654 455899999999999999999999999999888743   235578998 888


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145          248 PICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT  304 (317)
Q Consensus       248 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  304 (317)
                      ..+++.++..++..+...+..       +....+....+++++..++|..++||+++
T Consensus       406 ~~~~l~l~fl~~vlv~m~~~~-------~t~~~~~~~~~~~~~l~i~~~~~~~~~~~  455 (462)
T COG1113         406 FTNYLTLAFLAFVLVLMLFDP-------DTRISLLVGPVWLVLLGIGYLVKRKKKAR  455 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHcCc-------ccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            888888888888877765432       12234466666666666666565544443

>TIGR00909 2A0306 amino acid transporter

Probab=99.98  E-value=5.1e-31  Score=249.41  Aligned_cols=234  Identities=17%  Similarity=0.202  Sum_probs=193.0

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..++..++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+.+..... |.+++.+++.     | +
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~-~~~~~~~~~~-----~-~  266 (429)
T TIGR00909       194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAV-PWRQLAGSTA-----P-L  266 (429)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCc-CHHHhCCCCc-----H-H
Confidence            3468899999999999999999999999999999999999999999999999998888877 7777755443     6 6


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+...+.     ++++...++.+..+++.+++.++++.+.+|++++++|||.+|  ++|+|+|||+++|+++++++.+++
T Consensus       267 ~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~i~  339 (429)
T TIGR00909       267 SLVGYDL-----GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLP--GSLSKVHPKTGTPHMSIIIFSLTA  339 (429)
T ss_pred             HHHHHHh-----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHcCCCCCCcHHHHHHHHHHH
Confidence            6666554     567788899999999999999999999999999999999999  999999999999999999999888


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCC
Q 021145          192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFY  270 (317)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  270 (317)
                      .++..  .   ..++.+.++.++..++.|.+.+++.+++|||+ +.+||||.| ..+.++.+..+.+.+.....      
T Consensus       340 ~~~~~--~---~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------  407 (429)
T TIGR00909       340 ALLAS--L---VPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCP-LVPVLPVLVVSYCIYLLLNL------  407 (429)
T ss_pred             HHHHH--H---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cchHHHHHHHHHHHHHHHHc------
Confidence            87654  2   23678889999999999999999988777655 447899998 66677666665555543221      


Q ss_pred             CCCCCCccchHHHHHHHHHHHhhheee
Q 021145          271 PISWDTFNYAPVALGVGLGLIMLWWLL  297 (317)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (317)
                           ++ .......++..+|..+|.+
T Consensus       408 -----~~-~~~~~~~~~~~~g~~~y~~  428 (429)
T TIGR00909       408 -----GP-GTTVWFLVWMLLGSVFYFI  428 (429)
T ss_pred             -----cH-HHHHHHHHHHHHHHHHHHc
Confidence                 11 2335667777778777754

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=99.98  E-value=6.2e-31  Score=243.83  Aligned_cols=256  Identities=15%  Similarity=0.166  Sum_probs=213.2

Q ss_pred             ccccCCccCcccccceeeccCCCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHH
Q 021145            3 PLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW   82 (317)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yi   82 (317)
                      +.++..+.++...++.+   .+++.|.++..++...+..+-|+|.|-|.+...++|.|||+|++|||+.-..-.+.++|+
T Consensus       207 ~~~Gg~~~~~~ig~~yw---~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi  283 (541)
T COG0833         207 IICGGGPTHGYIGFNYW---HDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYI  283 (541)
T ss_pred             HhcCCCCCCCCcceeee---cCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHH
Confidence            34555555555566667   777888888889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccCch--hhhcCC-CcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145           83 ALILALCFSIQDFS--YLYDKS-NETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS  159 (317)
Q Consensus        83 l~~~~~~~~~~~~~--~~~~~~-~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a  159 (317)
                      +..+.+...+| ++  ++.+++ .+....| +...+++.     |-+..+.+++..++.+.+++.|+.+++.||++++||
T Consensus       284 ~si~~ig~lvP-y~dp~Ll~~~~~~~~~SP-Fvia~~~~-----Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA  356 (541)
T COG0833         284 LSIFVIGLLVP-YNDPRLLGNSSSGVAASP-FVIAIKNA-----GIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLA  356 (541)
T ss_pred             HHHHHheEEcc-CCCcccccCCcCCccCCC-hhHhHHhc-----CCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            99999999995 32  333322 2222348 77777665     778899999999999999999999999999999999


Q ss_pred             cCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc----
Q 021145          160 RDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK----  234 (317)
Q Consensus       160 ~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~----  234 (317)
                      +||..|  |+|+|+| |+|.|.+|++++.+++++..+-. ....+.|+++.+++.+..++.++.++++.++.||.-    
T Consensus       357 ~~g~AP--k~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~~~QG  433 (541)
T COG0833         357 KQGKAP--KIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAMKAQG  433 (541)
T ss_pred             hcCCCc--hHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999  9999999 88999999999999988776643 333569999999999999999999999999888641    


Q ss_pred             --CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCCCCC
Q 021145          235 --FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTFYPI  272 (317)
Q Consensus       235 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  272 (317)
                        .++-|||.| .++..++.+++.+++.++...+....|.
T Consensus       434 ~s~~~L~yks~-~~p~g~~~~~~~~~li~i~q~y~af~p~  472 (541)
T COG0833         434 RSLDELPYKSP-FGPYGPIYGLILCILILIGQGYVAFFPI  472 (541)
T ss_pred             CChhhcCccCC-CccHHHHHHHHHHHHHHHHcchheeecC
Confidence              224589998 8888899999998888887665554443

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.97  E-value=1e-30  Score=241.39  Aligned_cols=205  Identities=17%  Similarity=0.182  Sum_probs=178.4

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      +...+..++...+|+|.|||...+..||+|||+||+|||+.+++.++++.|+++++++..++ ++|++.+++.       
T Consensus       202 ~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vl-s~~e~l~S~a-------  273 (479)
T KOG1287|consen  202 DVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVL-SPDEILSSDA-------  273 (479)
T ss_pred             chHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEec-CHHHhcccch-------
Confidence            44568899999999999999999999999999999999999999999999999999999999 8899866654       


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI  190 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i  190 (317)
                      ++..+.+..    +|.+. +.+-+.+.++.+|++|+.+++.||+++++||||++|  +.|+..|+|+.||..++++++++
T Consensus       274 Vav~Fa~~~----~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP--~~~s~i~~~~~TP~~allf~~~~  346 (479)
T KOG1287|consen  274 VAVTFADRI----LGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLP--AFFSMISVRRFTPRPALLFSGLL  346 (479)
T ss_pred             HHHHHHHHh----ccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCcc--HHHHhhcCCCCCChHHHHHHHHH
Confidence            444454443    45554 999999999999999999999999999999999999  99999998888999999999999


Q ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHH
Q 021145          191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFL  255 (317)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~  255 (317)
                      +++..+     ...+++++|..++...+.+.+.+++.+++|+|+ +.+||+|.|-..+.+-.+.++
T Consensus       347 ~i~~~~-----~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i  407 (479)
T KOG1287|consen  347 SIVLSL-----IGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICI  407 (479)
T ss_pred             HHHHHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHH
Confidence            998887     446899999999999999999999999877665 458999998444444433333

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=99.97  E-value=3.7e-30  Score=246.19  Aligned_cols=244  Identities=15%  Similarity=0.057  Sum_probs=193.6

Q ss_pred             CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145           30 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF  109 (317)
Q Consensus        30 ~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p  109 (317)
                      +...++..++...+|+|.|||.+++++||+|| +||+||++..+..+++++|++.+.+..... |.+++.+.+.     |
T Consensus       196 ~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~-~~~~l~~~~~-----p  268 (473)
T TIGR00905       196 SVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVL-PQQELANLPN-----P  268 (473)
T ss_pred             chHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhhCCC-----c
Confidence            34457889999999999999999999999999 999999999999999999999999988888 7888866544     4


Q ss_pred             hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145          110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA  189 (317)
Q Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~  189 (317)
                      ...+..++.     .+++...++.++.+++.+++.++++.+.+|++++|||||.+|  ++|+|+|| +|+|+++++++.+
T Consensus       269 ~~~~~~~~~-----~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg~lP--~~~~~v~~-~~tP~~Ai~~~~~  340 (473)
T TIGR00905       269 SMAAVLEMI-----VGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDGLFP--KIFGRVNK-NGAPSVALLLTNI  340 (473)
T ss_pred             hHHHHHHHH-----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChh--HHHHhhCc-cCCCHHHHHHHHH
Confidence            133445555     356678889999999999999999999999999999999999  99999995 5999999999999


Q ss_pred             HHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145          190 ICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF  269 (317)
Q Consensus       190 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  269 (317)
                      ++.++.++.....+.++++.+++++..++.|.+++++.++.||+++.++ .+.| ++++++.++.+++++......    
T Consensus       341 i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~-~~~~-~~~~~~~l~~~~~~~~~~~~~----  414 (473)
T TIGR00905       341 LIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTYPK-IKNR-KALIVGVIACVYSIWLLYAAG----  414 (473)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-cccc-hHHHHHHHHHHHHHHHHHHhh----
Confidence            9887766555557789999999999999999999999988776642111 1223 677888888888877654331    


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145          270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKW  302 (317)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (317)
                          .    .......++++++...|..++|++
T Consensus       415 ----~----~~~~~~~~~~~~g~~~y~~~~~~~  439 (473)
T TIGR00905       415 ----L----KYLLLGFILYAPGIIFYGRARKER  439 (473)
T ss_pred             ----H----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence                0    112334444456666665555444

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=99.97  E-value=6.6e-30  Score=245.76  Aligned_cols=267  Identities=15%  Similarity=0.159  Sum_probs=198.7

Q ss_pred             CCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc-c
Q 021145           27 GISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE-T  105 (317)
Q Consensus        27 ~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~-~  105 (317)
                      +|.+ +.+++.++..++|+|.|+|.+++.+||+||||||+|||+..+..++.++|++..+...... |+++..+.+.. .
T Consensus       206 ~~~~-~~~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~-~~~~~~~~~~~~~  283 (496)
T PRK15238        206 AYQS-PIAVLSFVVFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVST-NWQQVLSNKSVNL  283 (496)
T ss_pred             cccc-chHHHHHHHHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcC-chhhcCCccccch
Confidence            4533 4678888999999999999999999999999999999999999999999999887777666 66665443210 0


Q ss_pred             cCCchHHHHHHHHhcc----cc---------CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCcccccee
Q 021145          106 AGAFVPAQILYDAFHG----RY---------HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQ  172 (317)
Q Consensus       106 ~~~p~~~~~~~~~~~~----~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~  172 (317)
                      ...| .  ...+.++.    ..         .+++...++.+..+++.+++.+++.++.+|.++..++||.+|  ++|+|
T Consensus       284 ~~~~-~--~~~~~~g~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P--~~f~k  358 (496)
T PRK15238        284 GNIT-Y--VLMNNLGYTLGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWP--KKMTK  358 (496)
T ss_pred             hccH-H--HHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCccc--HHHHh
Confidence            0112 1  11111110    00         124556677889999999999999999999999999999999  99999


Q ss_pred             ccCCCCChHHHHHHHHHHHHHHHhhh-cc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccC---Cc
Q 021145          173 LHPKHKVPSNAVWLCAAICIILGLPI-LK---VNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLG---KA  245 (317)
Q Consensus       173 ~~~r~~~P~~a~~~~~~i~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~---~~  245 (317)
                      +| |+|+|+++++++.+++.++.+.. .+   ..+.|+.+++++++..++.|.+.+.+++++||+++.+|||+.+   .+
T Consensus       359 ~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~~~~~~r~~~~~~~~~~  437 (496)
T PRK15238        359 LN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKKKKDIDRPFVVFKTKKS  437 (496)
T ss_pred             hC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCceecCCcce
Confidence            99 89999999999998888665432 33   2455899999999999999999999999888876667887763   25


Q ss_pred             hhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccceec
Q 021145          246 SRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFT  304 (317)
Q Consensus       246 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  304 (317)
                      +..++.+.++.+++.....++++..   ..++++....++...++..+.|..|++|+++
T Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  493 (496)
T PRK15238        438 TLIATIVVVLVVGFANVFTIIQPVI---EGDYQSTFWMIGGPVFFSILAWIIYQNYEKK  493 (496)
T ss_pred             ehhHHHHHHHHHHHHHHHheeCCCc---CCCHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence            6677777777777766656554422   2346665555555655565656555555443

>TIGR00911 2A0308 L-type amino acid transporter

Probab=99.97  E-value=8.9e-30  Score=245.31  Aligned_cols=199  Identities=14%  Similarity=0.131  Sum_probs=163.4

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      +..++..++..++|+|.|||.+++++||+|||+||+|||+..+..+++++|++.+++....+ |.+++.+++.     + 
T Consensus       233 ~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~-~~~~l~~~~~-----~-  305 (501)
T TIGR00911       233 SAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVL-SPEELLASLA-----V-  305 (501)
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhcChH-----H-
Confidence            35578889999999999999999999999999999999999999999999999999998888 7777765432     2 


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI  190 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i  190 (317)
                      .....+..+    |  ....++.+...++.+++.++++.+.+|+++++||||.+|  ++|+|+|||+++|+++++++.++
T Consensus       306 ~~~~~~~~~----g--~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~v~~~~~~P~~all~~~~i  377 (501)
T TIGR00911       306 AVDFGERLL----G--VMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGREGHLP--SLLSMIHVKRLTPLPSLLIVCTL  377 (501)
T ss_pred             HHHHHHHHh----h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--HHHHHhcCCCCCCHHHHHHHHHH
Confidence            223333343    3  356677888889999999999999999999999999999  99999999999999999999888


Q ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHH
Q 021145          191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPI  249 (317)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i  249 (317)
                      +.+...  .+   .+..+.++.++...+.|.+..++.++.|||+ +.+||||.|...+.+
T Consensus       378 ~~l~~~--~~---~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l  432 (501)
T TIGR00911       378 TLLMLF--SG---DIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVF  432 (501)
T ss_pred             HHHHHc--cC---CHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCCccCchHHHHH
Confidence            776543  22   3445667888888899999998888777664 458899998533333

>PRK11021 putative transporter; Provisional

Probab=99.97  E-value=1.4e-29  Score=238.12  Aligned_cols=204  Identities=19%  Similarity=0.233  Sum_probs=165.6

Q ss_pred             HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA  112 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  112 (317)
                      .++..++...+|+|.|+|.+++++||+|||+||+|||+..+..++.++|++.+.+..... ++++..+.+     .| ..
T Consensus       177 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~-~~~~~~~~~-----~~-~~  249 (410)
T PRK11021        177 SGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFP-AYGDKQAAA-----AS-LP  249 (410)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CCcchhhcc-----cc-HH
Confidence            458899999999999999999999999999999999999999999999999988876655 444433222     25 66


Q ss_pred             HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145          113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI  192 (317)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~  192 (317)
                      +.+++.+    | ++...++.+..+++.+++.++++.+.+|++++++|||.+|  ++|+|+| |+|+|+++++++.+++.
T Consensus       250 ~~~~~~~----G-~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~k~~-~~~tP~~ail~~~~i~~  321 (410)
T PRK11021        250 GIFVQLF----G-GYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPP--SYLARLS-ARGVPVNALNAVLGCCA  321 (410)
T ss_pred             HHHHHHh----C-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--HHHHhhc-cCCCcHHHHHHHHHHHH
Confidence            6676665    3 3355677888899999999999999999999999999999  9999999 77999999999998887


Q ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145          193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS  262 (317)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  262 (317)
                      +..++.......++.+.++++...++.|.+..++.++.+|++           .+.++.++.+.+++...
T Consensus       322 ~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~~-----------~~~~~~~~~~~~~~~~~  380 (410)
T PRK11021        322 VSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKGR-----------YRPLAVLGCLLCLLLLV  380 (410)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------hHHHHHHHHHHHHHHHH
Confidence            766543333456788899999999999999999988777643           12456666666665544

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=99.97  E-value=7.3e-29  Score=236.96  Aligned_cols=217  Identities=18%  Similarity=0.128  Sum_probs=178.8

Q ss_pred             CCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccC
Q 021145           28 ISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG  107 (317)
Q Consensus        28 ~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~  107 (317)
                      |++...++..++...+|+|.|+|.++.++||+|| +||+||++..+...+.++|++.+.+....+ +.+++.+.++    
T Consensus       190 ~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~-~~~~l~~~~~----  263 (468)
T TIGR03810       190 LGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGKATVIGLIGVLAIYVLVSVLSYGIM-TQAQLAGLKN----  263 (468)
T ss_pred             cccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchHHHHHHHHHHHHHHHHHHHHHHhCc-CHHHHhcCCC----
Confidence            4333345778899999999999999999999999 799999999999999999999999998888 7777765443    


Q ss_pred             CchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHH
Q 021145          108 AFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLC  187 (317)
Q Consensus       108 ~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~  187 (317)
                       |...+.+++.     ++++...++.++.+++.+++.++++.+.+|+++++||||.+|  ++|+|+| |+|+|+++++++
T Consensus       264 -p~~~~~~~~~-----~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg~lP--~~f~k~~-~~~tP~~al~~~  334 (468)
T TIGR03810       264 -PSMAYVLEHM-----VGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDKLMP--KYFGKEN-ANGAPTNALWLT  334 (468)
T ss_pred             -chHHHHHHHH-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHhhC-CCCCCHHHHHHH
Confidence             3144455555     357788999999999999999999999999999999999999  9999999 789999999999


Q ss_pred             HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc--CCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145          188 AAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFN--AGPFYLGKASRPICLIAFLWICYTCSVF  264 (317)
Q Consensus       188 ~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~  264 (317)
                      .+++.++.++...+.+.++.+.++++...++.|.+++++.++.|+|+++  .|++     ..+++.++.+.+++.....
T Consensus       335 ~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~  408 (468)
T TIGR03810       335 NGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERGRRK-----QLLIGLVALLYAVWLIYAA  408 (468)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhh-----hHHHHHHHHHHHHHHHHHh
Confidence            9988776655445678999999999999999999999998877765421  1222     3567777777777765543

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.96  E-value=7.8e-29  Score=236.73  Aligned_cols=252  Identities=17%  Similarity=0.142  Sum_probs=195.9

Q ss_pred             cccccCCccC--cccccceeeccCCCCCCCCc-hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHH
Q 021145            2 LPLVALTTQS--ASYVFTHFEMSPEATGISSK-PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIIS   78 (317)
Q Consensus         2 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~   78 (317)
                      ++.++..+.+  +-..++.+   .++++|.+. ..++..+++.+.|+|.|+|..+..+||+|||+|++|+|+..+..++.
T Consensus       201 Vi~~G~~~~d~~~~ig~~y~---~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~  277 (554)
T KOG1286|consen  201 VIIAGGGPADVKNWIGFRYW---HDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRIL  277 (554)
T ss_pred             eeecCCCcCCcCCCcCcccc---CCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHH
Confidence            4455555554  44466677   677788776 55899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCchh--hhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145           79 IFGWALILALCFSIQDFSY--LYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY  156 (317)
Q Consensus        79 i~yil~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  156 (317)
                      ++|++..+.+...+ |+++  +.+..      | ...-+.-..++. +-+....+++++.+++..+++|+.+++.+|.++
T Consensus       278 ~~Yi~~~~~l~l~v-py~~~~L~~~~------~-~~spF~iai~~~-~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~  348 (554)
T KOG1286|consen  278 LFYILSSIVLGLLV-PYNDPRLDPGA------A-LASPFVIAIGNA-GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLY  348 (554)
T ss_pred             HHHHHHHHHheEEe-ccCccccCCCC------c-cccHHHHHHhcc-CccccchhhhHHHHHHHHHHHHHHhHHhHHHHH
Confidence            99999999999999 5655  53322      1 223333233322 344455699999999999999999999999999


Q ss_pred             hhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-
Q 021145          157 ALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-  234 (317)
Q Consensus       157 ~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-  234 (317)
                      +||+||++|  ++|+++|+| |+|+.++++..+++.+..+.. ....+.++++.++.+++.++.|..++++.+++|+.. 
T Consensus       349 amA~~G~~P--k~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~  425 (554)
T KOG1286|consen  349 ALAKDGLAP--KFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMK  425 (554)
T ss_pred             HHHhcCCcc--hHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeeccc
Confidence            999999999  999999966 999999999999998877754 344678999999999999999999999999888653 


Q ss_pred             -----CcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145          235 -----FNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF  269 (317)
Q Consensus       235 -----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  269 (317)
                           .++.+|+.+ ..+.....+.+...+......+...
T Consensus       426 ~q~~~~~~~~~~s~-~~~~gs~~~~~~~~l~~~~~~~~~~  464 (554)
T KOG1286|consen  426 VQGRSLDELPYKSP-TGPYGSYYGLLVNILILLAQFYVAF  464 (554)
T ss_pred             ccCCCcccccccCC-CCCchhHHHHHHHHHHHHHHHhccc
Confidence                 234466665 3344444444444444444444333

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.96  E-value=9e-30  Score=244.01  Aligned_cols=225  Identities=20%  Similarity=0.191  Sum_probs=180.5

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..+++.++..++++|.|+|.++..+||+||||||+|||+..++++++++|++...+....+ ++++....+....+.| +
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~-~~~~~~~~~~~~~~sp-~  276 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAV-PYDNLGLTAASNSASP-F  276 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhccccc-Cccchhhccccccccc-h
Confidence            4569999999999999999999999999999999999999999999999999999999998 5665543332111225 5


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+..+..     +.++...++.++.+.+.+++.++.+++.+|++++|+|||.+|  +++.++++|+|+|++|++++.+++
T Consensus       277 ~~~~~~~-----~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l~ama~dg~lP--~~~~~~~~k~~~P~~Ai~~~~~i~  349 (478)
T PF00324_consen  277 VIAAQYS-----GGPWLAWIVNAGILISAFSSANASLYAASRLLYAMARDGLLP--KKFFARHPKNGVPYVAILVSSIIS  349 (478)
T ss_pred             hhhhhhc-----ccccccceecccchhhhhhhhhhhhcccceeehhhhhhhhhh--hhhhhhhhcCCceEEEEeeehhch
Confidence            5555444     678889999999999999999999999999999999999999  999999999999999999999998


Q ss_pred             HHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-c-----CCCcccCCchhHHHHHHHHHHHHHHHHh
Q 021145          192 IILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF-N-----AGPFYLGKASRPICLIAFLWICYTCSVF  264 (317)
Q Consensus       192 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~  264 (317)
                      .+..+.. ....+.++.+.+..++..++.|.+.+++.+++||+.+ .     +.+++.+ ..+...+.+...+.......
T Consensus       350 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~i~~  428 (478)
T PF00324_consen  350 LLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSP-FGPMFAILGIAALIIILIFL  428 (478)
T ss_pred             heeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhh-hhHHhHHHHHHHHHHHhhhh
Confidence            8877643 2234678889999999999999999999997776521 1     2356655 45555555555554444444


Q ss_pred             hC
Q 021145          265 LL  266 (317)
Q Consensus       265 ~~  266 (317)
                      .+
T Consensus       429 ~~  430 (478)
T PF00324_consen  429 GF  430 (478)
T ss_pred             hh
Confidence            33

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=99.95  E-value=8.8e-27  Score=220.24  Aligned_cols=233  Identities=26%  Similarity=0.355  Sum_probs=184.5

Q ss_pred             CCCCCCCchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCC
Q 021145           24 EATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN  103 (317)
Q Consensus        24 ~~~~~~~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~  103 (317)
                      ++++|+.    ++.++..++|+|.|+|.+++++||.||  ||+||++..+.+++.++|++.+++..... |.++....+.
T Consensus       183 ~~~~~~~----~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~~~~~~i~y~l~~~~~~~~~-~~~~~~~~~~  255 (426)
T PF13520_consen  183 FPSGWPG----FLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIISIIIVAIIYILFSIALLGAL-PDDELANSSN  255 (426)
T ss_dssp             SCSSSSH----HHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-THCHHHTTTC
T ss_pred             CCccccc----hhhHHHHHHhhcccccccccccccccc--hhheeecccchhHHHHHHhhhhheeeecc-cchhhhcccc
Confidence            3445542    789999999999999999999999777  89999999999999999999999999999 6666644322


Q ss_pred             cccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHH
Q 021145          104 ETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNA  183 (317)
Q Consensus       104 ~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a  183 (317)
                        .+++ ....+++.     ++++...++.+..+++.+++.++.+.+.+|++++++|||.+|  ++|+|+| |+|+|+++
T Consensus       256 --~~~~-~~~~~~~~-----~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP--~~~~~~~-k~~~P~~a  324 (426)
T PF13520_consen  256 --SPSP-FAVLASAV-----GGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLP--KWFAKVN-KFGTPYNA  324 (426)
T ss_dssp             --HHCH-HHHHHHHH-----HCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSS--GGGGTTS-SSSSCHHH
T ss_pred             --cccc-cchhhccc-----cccccccccccccccccccccchhhcchhhcccccccccchh--hhhhhcc-ccCCceee
Confidence              0113 33444443     456799999999999999999999999999999999999999  9999999 99999999


Q ss_pred             HHHHHHHHHHHHhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHH
Q 021145          184 VWLCAAICIILGLPI-LKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCS  262 (317)
Q Consensus       184 ~~~~~~i~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  262 (317)
                      ++++.+++.++.+.. ..+.+.++.+.++.++...+.|.+...+.++.|+|+++.++  .+ ..+.+++++.+.+++...
T Consensus       325 ~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r--~~-~~~~~~i~~~~~~~~~~~  401 (426)
T PF13520_consen  325 IILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR--IP-YRPPVGIIGIIIILFVII  401 (426)
T ss_dssp             HHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH---H-HHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC--CC-cchHHHHHHHHHHHHHHH
Confidence            999999997765433 33356788999999999999999999998877776544321  11 235677778787777777


Q ss_pred             HhhCCCCCCCCCCCc
Q 021145          263 VFLLPTFYPISWDTF  277 (317)
Q Consensus       263 ~~~~~~~~~~~~~~~  277 (317)
                      ..+.|...+...+.+
T Consensus       402 ~~~~~~~~~~~~~~~  416 (426)
T PF13520_consen  402 ASFFPLINPATWASL  416 (426)
T ss_dssp             HCCCHHSHCCCC-HC
T ss_pred             HHHHhccccchhhhh
Confidence            777665444444433

...

>TIGR00930 2a30 K-Cl cotransporter

Probab=99.95  E-value=3.1e-26  Score=231.96  Aligned_cols=220  Identities=18%  Similarity=0.114  Sum_probs=168.5

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCc----ccCC-
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNE----TAGA-  108 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~----~~~~-  108 (317)
                      +++..+...+++|.|+|..++++||+|||+|++|||++.++.+++++|++++++..... +.+...+....    ..+. 
T Consensus       281 ~f~~~~ai~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~-~~d~~~~~~~~l~~~~~g~~  359 (953)
T TIGR00930       281 GFFSLFGIFFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACV-VRDATGDKNDTLVTNCTSAA  359 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccc-cHhhhcccchhhhcccccch
Confidence            37777777888999999999999999999999999999999999999999998777776 43332211100    0000 


Q ss_pred             --------chHHHHHH---HHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCC
Q 021145          109 --------FVPAQILY---DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKH  177 (317)
Q Consensus       109 --------p~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~  177 (317)
                              | ....+.   ....   .......++.++++++.+++.++++++.+|+++++||||.+|+.++|+|+|+|+
T Consensus       360 ~f~~~~~~p-~~~gL~~~~~~~~---~~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~  435 (953)
T TIGR00930       360 CFSECAHNT-CSYGLMNNLQVMS---LVSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKN  435 (953)
T ss_pred             hhhhhcccc-hhhhhcchHHHHh---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCC
Confidence                    0 000000   0110   112246789999999999999999999999999999999999778999999999


Q ss_pred             CChHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCchhHHHHHHHHH
Q 021145          178 KVPSNAVWLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKASRPICLIAFLW  256 (317)
Q Consensus       178 ~~P~~a~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~  256 (317)
                      ++|++|++++++++.+++++     ..++.+..+.+.++++.|++.+++.++.|..+ +..||.... ..+.+++++.+.
T Consensus       436 ~tP~~Alllt~iIa~l~ili-----~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~-~~~~~sllG~l~  509 (953)
T TIGR00930       436 GEPLRAYLLTAFIAEGFILI-----AELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKY-YHWWLSLLGASL  509 (953)
T ss_pred             CCcHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCcccc-chHHHHHHHHHH
Confidence            99999999999999888772     35778888889999999999999988766433 334443222 467888888888


Q ss_pred             HHHHHHHh
Q 021145          257 ICYTCSVF  264 (317)
Q Consensus       257 ~~~~~~~~  264 (317)
                      |+++++..
T Consensus       510 c~~lmf~i  517 (953)
T TIGR00930       510 CCAIMFLI  517 (953)
T ss_pred             HHHHHHHH
Confidence            88877665

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=99.95  E-value=1.8e-26  Score=220.24  Aligned_cols=217  Identities=26%  Similarity=0.330  Sum_probs=178.4

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      ...++..++...+|+|.|+|.+++++||+|||+|++||++..+.+.+.++|++.+.+..... +.+++... . . ..| 
T Consensus       199 ~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~-~-~-~~p-  273 (466)
T COG0531         199 SFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVL-PAGDLAAS-A-P-SAP-  273 (466)
T ss_pred             hHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCc-cHHHHhcc-C-C-Ccc-
Confidence            34479999999999999999999999999999999999999999999999999999999998 66555443 2 1 146 


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI  190 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i  190 (317)
                      ..+......     +.+...++.+..+++.+++.+++..+.+|.+++++|||.+|  ++|+|+|+|+++|+++++++.++
T Consensus       274 ~~~~~~~~~-----g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~lP--~~~~~~~~~~~~P~~a~~~~~ii  346 (466)
T COG0531         274 LALAALFGG-----GNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMARDGLLP--KFFAKVNPKGRTPVIALILTGII  346 (466)
T ss_pred             HHHHHHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHhCCCCCCCHHHHHHHHHH
Confidence            666666553     46789999999999999999999999999999999999999  99999999999999999999999


Q ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccCCch--hHHHHHHHHHHHH
Q 021145          191 CIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLGKAS--RPICLIAFLWICY  259 (317)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~i~~~~~~~~~~  259 (317)
                      +..+.+........++.+.++++...++.|.+...+.+..||++ ++++++|.++..  ..++.+....+++
T Consensus       347 ~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (466)
T COG0531         347 SLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPLAPLIPILGIVAVLLLLY  418 (466)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccccchHHHHHHHHHHHHHH
Confidence            98333222111556889999999999999999999998777764 457888877433  3444444444444

>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]

Probab=99.69  E-value=3.2e-16  Score=148.72  Aligned_cols=212  Identities=18%  Similarity=0.144  Sum_probs=157.3

Q ss_pred             HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145           35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI  114 (317)
Q Consensus        35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  114 (317)
                      +..-+..-+=+.+|+-+.++.+++.|||+|.||.+.+.+++....+|+..++.+...+ +...+-+.-    |+. +-..
T Consensus       412 FtlLvgIfFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i-~~~vLRDKf----G~s-v~g~  485 (1075)
T KOG2082|consen  412 FTLLVGIFFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACI-EGVVLRDKF----GQS-VGGN  485 (1075)
T ss_pred             HHHHHHhhccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhh-cchhhhhhh----hhh-ccCc
Confidence            4444444555889999999999999999999999999999999999999888888877 422222211    111 0000


Q ss_pred             HHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHHH
Q 021145          115 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIIL  194 (317)
Q Consensus       115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~~  194 (317)
                      .  ..+..  .....+++.++.+++++|+...+..+++|+++++|||+.+|+-+.|+|.. ++|.|.+|++++++++...
T Consensus       486 l--Vva~l--aWPsPwVi~IGsFlST~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~g  560 (1075)
T KOG2082|consen  486 L--VVATL--AWPSPWVIVIGSFLSTCGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECG  560 (1075)
T ss_pred             E--EEEEe--cCCCceeeehhHHHHHhHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhh
Confidence            0  01111  11245578899999999999999999999999999999999999999988 8899999999999999998


Q ss_pred             HhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhh
Q 021145          195 GLPILKVNVVFTAITSICTIGWVGGYAVPIFARM---VMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFL  265 (317)
Q Consensus       195 ~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  265 (317)
                      ++  .++.+....   ...++++++|.++.++..   ++|--.++|| ||.  .++.++.++..+|++.++...
T Consensus       561 IL--igslD~iAp---ilsmFFLMCY~fVNLaCavqtLLrtPnWRPR-fky--yHW~LSflG~sLC~~iMF~~S  626 (1075)
T KOG2082|consen  561 IL--IGSLDLIAP---ILSMFFLMCYLFVNLACAVQTLLRTPNWRPR-FKY--YHWSLSFLGASLCLAIMFISS  626 (1075)
T ss_pred             he--eechhHHHH---HHHHHHHHHHHHHhHHHHHHHHhcCCCCCcc-chh--hhhHHHHHHHHHHHHHHHHHH
Confidence            88  555555554   445566777777666544   3333333332 443  578899999999999988774

>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=99.52  E-value=3.7e-13  Score=127.23  Aligned_cols=203  Identities=19%  Similarity=0.165  Sum_probs=155.5

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ  113 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  113 (317)
                      .+...+...+-+-.|+-+.+++++|.|+|.|.|||+.+.++....+.|+++.+.+.--. +..-+.+ +.         +
T Consensus       295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~-~r~~Lq~-dy---------~  363 (945)
T KOG1288|consen  295 DFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTV-PRTLLQN-DY---------D  363 (945)
T ss_pred             ehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCc-chHHhhh-ch---------h
Confidence            46666777777889999999999999999999999999999999999999888877766 4333322 22         2


Q ss_pred             HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145          114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII  193 (317)
Q Consensus       114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~  193 (317)
                      +++++       .....++.++.+-..+.+..+.+.+++|++.++|||+.+|.-..|+|...+.+.|+.|+.+...+.-+
T Consensus       364 v~~~i-------sl~p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvql  436 (945)
T KOG1288|consen  364 VMMHI-------SLHPPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQL  436 (945)
T ss_pred             heeec-------cccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHH
Confidence            33222       11345677788888888999999999999999999999998888899988999999999999999888


Q ss_pred             HHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCC-cccCCchhHHHHHHHHHHHHHH
Q 021145          194 LGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGP-FYLGKASRPICLIAFLWICYTC  261 (317)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~  261 (317)
                      ..+     .+.++.+..+.++.+++.|....++.+.++... +.-|| ||.-.|+  -+.++.+.++.++
T Consensus       437 vll-----~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFRPtFkyF~w~--TclvG~l~s~~mM  499 (945)
T KOG1288|consen  437 VLL-----WGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFRPTFKYFNWH--TCLVGVLLSLGMM  499 (945)
T ss_pred             HHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhhhhhHH--HHHHHHHHHHhhh
Confidence            776     446788888899999999999999888666553 22232 5543333  2334444444443

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.48  E-value=1.3e-12  Score=121.92  Aligned_cols=197  Identities=13%  Similarity=0.022  Sum_probs=135.6

Q ss_pred             HHHHHhHhhhhhhcccc-ccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc-cCCchH
Q 021145           34 AVILSFLVSQYSLYGYD-SAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET-AGAFVP  111 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e-~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~-~~~p~~  111 (317)
                      ++..++...+++| |+| ..+.+.+|.|+++|++||++..+..++.++|++.+.+..+.+ +.+++.+..... +..+ +
T Consensus       179 ~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~-~~~~l~~~~~~~~~~~~-l  255 (381)
T TIGR00837       179 YILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNL-PRSEFLPIIAKGGNLDG-L  255 (381)
T ss_pred             HHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHcCCChHH-H
Confidence            5778888888888 665 688899999877999999999999999999999999999999 777775322100 0113 4


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+.+....    |+++...++.++..++..++.+++..+..+.+         +  +.+.+.++|++ |..+.++..+..
T Consensus       256 ~~~~~~~~----~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l---------~--~~~~~~~~~~~-~~~~~~~~~~~p  319 (381)
T TIGR00837       256 VNALQGVL----KSSAIELALELFSNFALASSFLGVTLGLFDYL---------A--DLFKFDDSKKG-RFKTGLLTFLPP  319 (381)
T ss_pred             HHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H--HHhCCCcccCC-CchhhhhhHHhH
Confidence            44555444    67778899999999999999999998888544         3  33444343434 566677777666


Q ss_pred             HHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHH
Q 021145          192 IILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIA  253 (317)
Q Consensus       192 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  253 (317)
                      .++..  ..+...+..+........++...++....+..||+++ +.+||.| .++....+.
T Consensus       320 l~~a~--~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~-~~~~~~~-~~~~~~~~~  377 (381)
T TIGR00837       320 LVFAL--FYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFP-NAGYRVW-GGNKLLLLV  377 (381)
T ss_pred             HHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcccc-CChHHHHHH
Confidence            66654  2223334556565655555666666665555455433 4589998 555554443

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>TIGR00796 livcs branched-chain amino acid uptake carrier

Probab=99.16  E-value=9.6e-10  Score=101.49  Aligned_cols=179  Identities=15%  Similarity=0.120  Sum_probs=135.1

Q ss_pred             HHHHHhHhhhhhhc-------cccccchhhh-hccCcccchhhHHHHHH-HHHHHHHHHHHHHHHhhccCchhhhcCCCc
Q 021145           34 AVILSFLVSQYSLY-------GYDSAAHLTE-ETKGADKTGPIAILSSI-GIISIFGWALILALCFSIQDFSYLYDKSNE  104 (317)
Q Consensus        34 ~~~~a~~~~~~af~-------G~e~~~~~~~-E~k~P~r~ip~ai~~~~-~~~~i~yil~~~~~~~~~~~~~~~~~~~~~  104 (317)
                      .+..++.-..+.++       |+-.+..+.+ |.|||+|+.|+.+..++ ..+.+.|+....++.++. +.+++.+.++ 
T Consensus       175 ~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia~i~l~~vY~~L~~lGa~-~~~~~~~~~~-  252 (378)
T TIGR00796       175 AFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIAAVLLAFIYLSLFYLGAT-SAAAAGDAVN-  252 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cHhhhcccCC-
Confidence            47788888888898       9999999998 99999999999999999 778888888888888887 5554543211 


Q ss_pred             ccCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHH
Q 021145          105 TAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAV  184 (317)
Q Consensus       105 ~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~  184 (317)
                       .++. +.+..++.+     |+.+..++.+.+.++++++.++...+++               +.|+|.++|  .|+.+.
T Consensus       253 -~~~~-l~~~a~~~~-----G~~G~~ll~i~v~lACLtT~iGli~~~a---------------~~f~~~~~k--~~y~~~  308 (378)
T TIGR00796       253 -GAQI-LSAYSQHLF-----GSLGSFLLGLIITLACLTTAVGLTTACS---------------EYFHKLVPK--LSYKTW  308 (378)
T ss_pred             -cHHH-HHHHHHHHc-----chhHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHhcCC--CCHHHH
Confidence             1234 666677776     3558999999999999999999999944               556666645  899998


Q ss_pred             HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccC-cCCCcccC
Q 021145          185 WLCAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMV--MAEQKF-NAGPFYLG  243 (317)
Q Consensus       185 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~--~~~~~~-~~~~~~~~  243 (317)
                      ++...+....+.     ...++.+++++.-...+.|=+.....+.  .||+.+ ++|+||.+
T Consensus       309 v~~~~l~s~~ia-----~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~  365 (378)
T TIGR00796       309 VIVFTLFSFIVA-----NLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQIT  365 (378)
T ss_pred             HHHHHHHHHHHH-----HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehH
Confidence            888887776665     2347778887777777777666555554  555443 37888876

transmembrane helical spanners.

>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]

Probab=98.53  E-value=9.3e-08  Score=90.31  Aligned_cols=218  Identities=19%  Similarity=0.152  Sum_probs=149.1

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc-----cCchhhhcCCCccc
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI-----QDFSYLYDKSNETA  106 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~-----~~~~~~~~~~~~~~  106 (317)
                      ...++.-+...+=+.+|.-+..+++++.|+|++++|++...++.....+|+....-.....     +...+..+.+. ..
T Consensus       222 ~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c-~~  300 (643)
T KOG2083|consen  222 GYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSC-PI  300 (643)
T ss_pred             CCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCC-cc
Confidence            4467777788888999999999999999999999999999999999999977554444332     11112212111 11


Q ss_pred             CCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHH
Q 021145          107 GAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWL  186 (317)
Q Consensus       107 ~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~  186 (317)
                      +..+-.+..+..       .........+...+.+.+..+.+.+..++++.+.+|+..|-.-+++|-.+|++.|.++..+
T Consensus       301 gl~~~~qv~smv-------S~~~Pl~~AGi~~a~LSsalsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l  373 (643)
T KOG2083|consen  301 GLTNYLQVMSMV-------STFGPLITAGILAAELSSALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLL  373 (643)
T ss_pred             chHHHHHHHHhH-------hhcccchhhHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHH
Confidence            111122233322       1144466778888899999999999999999999999999667889999999999999999


Q ss_pred             HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-cCCC-cccCCchhHHHHHHHHHHHHHHHHh
Q 021145          187 CAAICIILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKF-NAGP-FYLGKASRPICLIAFLWICYTCSVF  264 (317)
Q Consensus       187 ~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~  264 (317)
                      +...+..++.  .+.   ++.+-...+......|.....+.+..+-... .+|| ++..  -.+++.++.+.++...+..
T Consensus       374 ~~~~av~fi~--ige---ln~iapiis~FfL~syAlinf~~f~aSl~~s~~wRp~f~~y--n~wVSllGalKOG~ImFli  446 (643)
T KOG2083|consen  374 TFLTAVSFIA--IGE---LNIIAPIISNFFLLSYALINFSCFHASLAISEGWRPSFKFY--NAWVSLLGALLCLAIMFLI  446 (643)
T ss_pred             HHHhHheeEE--ecc---cceeccchhhhhhhhhhccchhhhhhhhccccccCchhhhH--HHHHHHHHHHHHHHHHHHH
Confidence            9999988776  333   3444445566777888888776663333222 2222 2322  2455555555555554443

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.49  E-value=2.3e-05  Score=73.39  Aligned_cols=192  Identities=14%  Similarity=0.038  Sum_probs=121.0

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      +......++...+++|.-...++.+.+..++-+|+++|++..+..+..++|++...+..+.+ |.++..+....+ + + 
T Consensus       182 ~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l-~~~~~~~~~~~~-~-~-  257 (394)
T PF03222_consen  182 DWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSL-PREQFAEAIAQG-G-N-  257 (394)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHHHHHhcC-C-C-
Confidence            34458899999999999999999999999977888999999999999999999999988888 555543321100 0 1 


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAI  190 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i  190 (317)
                      .. .....+++..++++...+..+..+++..++..+...+....+...     +   ++  +.+++++  .....+..+.
T Consensus       258 ~~-~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~-----~---k~--~~~~~~r--~~~~~ltf~p  324 (394)
T PF03222_consen  258 VS-ALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL-----F---KL--KNNSSGR--LKTWLLTFLP  324 (394)
T ss_pred             hH-HHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H---cC--Cccccch--HHHHHHHHHh
Confidence            21 222233333367888888888888888888888888877776432     1   11  1121222  2222333333


Q ss_pred             HHHHHhhhcccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhccCcCCCcccC
Q 021145          191 CIILGLPILKVNVVFTAITSICTIGWVGGYA-VPIFARMVMAEQKFNAGPFYLG  243 (317)
Q Consensus       191 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~-~~~~~~~~~~~~~~~~~~~~~~  243 (317)
                      ..++.+  .. .+.|...++.+.....+.+. ++... .+..|+++++++|+.+
T Consensus       325 pl~~a~--~~-p~~F~~al~~aG~~~~il~~ilP~~m-~~~~r~~~~~~~~~~~  374 (394)
T PF03222_consen  325 PLIFAL--LF-PNGFLIALGYAGIGIAILLGILPALM-VWKARKRKPKQPYRVP  374 (394)
T ss_pred             HHHHHH--HC-cHHHHHHHHhhcHHHHHHHHHHHHHH-HHHHHcccCCCCeEEe
Confidence            333333  22 34566666666544443333 44443 3444555555668876

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.23  E-value=7.3e-05  Score=69.21  Aligned_cols=110  Identities=8%  Similarity=-0.125  Sum_probs=81.9

Q ss_pred             HHHHHhH-hhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145           34 AVILSFL-VSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA  112 (317)
Q Consensus        34 ~~~~a~~-~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  112 (317)
                      .+..+.. ...++|.|+|......+|+||| |+.||++..+..+++++|++...+..+.. ++++..+...     | ..
T Consensus       179 ~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ly~~~~~~~i~~l-g~~~~~~~~~-----P-~~  250 (359)
T TIGR00912       179 PILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVLLYILTTFVSISVF-GGNVTKNLYW-----P-TL  250 (359)
T ss_pred             HHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHhee-cHHHhhhhcc-----c-HH
Confidence            4666665 8899999999999999999996 56999999999999999999999999999 7777766554     7 66


Q ss_pred             HHHHHHhccccCChh---HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          113 QILYDAFHGRYHNST---GAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       113 ~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      +..+..-    .+..   .-.++...-+.+.+......++..++.+
T Consensus       251 ~~~~~i~----~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~  292 (359)
T TIGR00912       251 ELIKLIN----IGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGL  292 (359)
T ss_pred             HHHHHhh----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6665542    1111   2233444445555666666777777775

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.15  E-value=0.00043  Score=64.86  Aligned_cols=192  Identities=13%  Similarity=-0.029  Sum_probs=120.4

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccC-CchHH
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAG-AFVPA  112 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~  112 (317)
                      ....++...+++|.=...++.+....++-+|+++|++..+..+..++|++-..+..... +.+++.+...++.. .+ ..
T Consensus       182 ~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l-~~~~~~~~~~~~~~~~~-~l  259 (403)
T PRK15132        182 LALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSI-DSTTFMGLLANHAGLNG-LL  259 (403)
T ss_pred             HHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHccCchHH-HH
Confidence            37888899999999999999999998887788999999999999999999999999999 55554322111000 01 22


Q ss_pred             HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145          113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI  192 (317)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~  192 (317)
                      +......    ++++...+..+...++..++..+...+....+..+-+.+          .+++.+.  ....+..+...
T Consensus       260 ~~l~~~~----~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~----------~~~~~r~--~~~~l~flppl  323 (403)
T PRK15132        260 QALREVV----ASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRR----------NTVGGRL--QTGLITFLPPL  323 (403)
T ss_pred             HHHHHHc----cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----------ccccCCc--hhehhhHHHHH
Confidence            3333332    677788888888888888888888888777775542211          0111111  12333334444


Q ss_pred             HHHhhhcccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhccCcCCCcccCCchhH
Q 021145          193 ILGLPILKVNVVFTAITSICTI-GWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRP  248 (317)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~~~~-~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (317)
                      ++.+.+   .+.|....+.+.. ...+.+.++.......|++ +++++||.| -++.
T Consensus       324 i~a~~~---P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~-~~~~~y~v~-gg~~  375 (403)
T PRK15132        324 AFALFY---PRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ-NPQAGYRVK-GGRP  375 (403)
T ss_pred             HHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCCccCC-CChH
Confidence            444322   4455555555443 3344455566555444433 324678887 3444

>PRK10483 tryptophan permease; Provisional

Probab=98.00  E-value=0.0008  Score=63.05  Aligned_cols=119  Identities=13%  Similarity=0.006  Sum_probs=86.7

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ  113 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  113 (317)
                      ..+.++...+++|.=...++.+.+..++=+|+++|++..+..+..++|++-..+..+.+ +.+++.+...+  +.. + +
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l-~~~~~~~~~~~--~~n-i-~  267 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNI-PRPEFIGIAEK--GGN-I-D  267 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc--CCC-h-H
Confidence            37788889999998889999999988765568999999999999999999999999999 55554332100  011 3 2


Q ss_pred             HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021145          114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA  157 (317)
Q Consensus       114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~  157 (317)
                      ...+.+++..++++...+..+...++..++..+...+....+..
T Consensus       268 ~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D  311 (414)
T PRK10483        268 VLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD  311 (414)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33233444336677777777777778777777777777666643

>PHA02764 hypothetical protein; Provisional

Probab=97.93  E-value=6.5e-05  Score=66.37  Aligned_cols=103  Identities=19%  Similarity=0.229  Sum_probs=74.3

Q ss_pred             HHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHH
Q 021145           35 VILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQI  114 (317)
Q Consensus        35 ~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  114 (317)
                      ...++....-+|.=.|+..+.++|+||-+|....+-..+-..+.++-+.-.         +..             .   
T Consensus       183 ~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~gyf~s~~~~~~~~ii~s---------y~n-------------~---  237 (399)
T PHA02764        183 LLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIGYFVSYGIVAILSIIDS---------YSN-------------L---  237 (399)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhhhHHHHHHHHHHHHHHh---------hhh-------------H---
Confidence            677777777888889999999999999998887776666555544322211         100             0   


Q ss_pred             HHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChH
Q 021145          115 LYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPS  181 (317)
Q Consensus       115 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~  181 (317)
                                    . ++...+..+.++.+....--.||+.++|+.|+.+|  ++|+|.| | ++|.
T Consensus       238 --------------~-il~~~~~~w~~~y~~~~~~~~srli~~~~fd~~lp--e~f~k~~-~-nv~~  285 (399)
T PHA02764        238 --------------N-ILFALMPIWFFSYMPIANKIQSRLIQTMSFDKVLP--EKFSKIN-P-NVLL  285 (399)
T ss_pred             --------------H-HHHHHHHHHHHhheeeecchHHHHHHHHHhhhhch--HHHhccC-C-Ccee
Confidence                          0 11112555666777777778899999999999999  9999999 4 5787

>TIGR00814 stp serine transporter

Probab=97.91  E-value=0.00025  Score=66.42  Aligned_cols=119  Identities=8%  Similarity=-0.032  Sum_probs=85.1

Q ss_pred             HHHHHHhHhhhhhhccccccchhh----hhccCc---ccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcc
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLT----EETKGA---DKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNET  105 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~----~E~k~P---~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~  105 (317)
                      ..+..++...+|+|.|+|..+.+.    +|.+||   +|+..|++..+..+..++|++..++..... +.+++.+....+
T Consensus       186 ~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l-~~~~~~~a~~~n  264 (397)
T TIGR00814       186 KTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSL-SPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHcC
Confidence            458999999999999999999998    777755   578899999999999999999999999999 666665433210


Q ss_pred             cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145          106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALS  159 (317)
Q Consensus       106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a  159 (317)
                        .+ ..    +.+.+..++++...+..+...++...+..+...+..-.+..+-
T Consensus       265 --is-~L----s~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~  311 (397)
T TIGR00814       265 --IS-IL----SYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIV  311 (397)
T ss_pred             --cH-HH----HHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence              12 22    2222222566666666666666666666666666655555544

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=97.89  E-value=0.0019  Score=60.55  Aligned_cols=118  Identities=8%  Similarity=-0.092  Sum_probs=83.9

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHH
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQ  113 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  113 (317)
                      .+..++...+.+|.=...++.+..-.++=.|+++|+++.+..+..+.|++...+....+ |.+++.....+  +.. +.+
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~l-p~~~~~~~~~~--g~n-v~~  269 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNI-PRESFKAIISS--GGN-VDS  269 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHc--CCC-chH
Confidence            36678888888888888889998888766688999999999999999999999999988 55555322110  111 434


Q ss_pred             HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145          114 ILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY  156 (317)
Q Consensus       114 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  156 (317)
                      ......++. .+++...+..+...++..++..+...+....+.
T Consensus       270 l~~s~~~~~-~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~  311 (415)
T PRK09664        270 LVKSFLGTK-QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLA  311 (415)
T ss_pred             HHHHHHhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444442 566777777777777777777776666665553

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=97.61  E-value=0.0083  Score=56.70  Aligned_cols=63  Identities=14%  Similarity=-0.059  Sum_probs=58.5

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCcccc-hhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKT-GPIAILSSIGIISIFGWALILALCFSIQ   93 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~-ip~ai~~~~~~~~i~yil~~~~~~~~~~   93 (317)
                      ....+..++..++++|.+.-....+.+|.|+++|+ ++|++..+..+..++|+.........++
T Consensus       191 ~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~  254 (415)
T COG0814         191 FWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG  254 (415)
T ss_pred             hHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            34568999999999999999999999999988877 9999999999999999999999999985

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.96  E-value=0.053  Score=51.10  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=52.3

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcccchh---hHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGADKTGP---IAILSSIGIISIFGWALILALCFSIQ   93 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip---~ai~~~~~~~~i~yil~~~~~~~~~~   93 (317)
                      ++...+..++|+|.|.-.+-.+=+|+|+|++ +|   ..+-.++.++.++|+..-+.-....+
T Consensus       242 ~~~lf~GtaifafEGig~VLPlEn~Mk~P~~-F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG  303 (449)
T KOG1304|consen  242 GLPLFFGTAIFAFEGIGMVLPLENSMKKPQK-FPGPFGVLNLGMGIVTLLYIFLGFFGYLAFG  303 (449)
T ss_pred             hhHHHHHHHHHHhccceEEEehhhcccChhh-cCCccchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4677788899999999999999999999954 88   99999999999999998888777773

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.77  E-value=0.028  Score=53.30  Aligned_cols=91  Identities=11%  Similarity=0.041  Sum_probs=69.2

Q ss_pred             HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145           36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL  115 (317)
Q Consensus        36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  115 (317)
                      +.++....|+|.|.....++...+|+|+| ++|+...+..+++..|+.+++....+.+|  ...             +..
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~~~lis~~~~~~~y~~vai~GY~aFG~--~~~-------------~~i  294 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKKALLISYIIVTFLYFPVAIIGYWAFGD--SVP-------------DNI  294 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCchh-hhhHHHHHHHHHHHHHHHHHHhhhhhhcc--ccc-------------hhh
Confidence            78999999999999999999999999988 99999999999999999999998888742  111             111


Q ss_pred             HHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 021145          116 YDAFHGRYHNSTGAIILLIVIWGSFFFGGL  145 (317)
Q Consensus       116 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  145 (317)
                      ...++   ++.|.....++.+.+-.+++..
T Consensus       295 l~s~~---~p~~~~~~ani~i~~h~i~s~~  321 (437)
T KOG1303|consen  295 LLSLQ---PPTWLIALANILIVLHLIGSYQ  321 (437)
T ss_pred             hhccc---CchhHHHHHHHHHHHHHhhhhh
Confidence            11121   2556666666666666665544

>PLN03074 auxin influx permease; Provisional

Probab=96.74  E-value=0.08  Score=50.96  Aligned_cols=60  Identities=7%  Similarity=-0.030  Sum_probs=50.2

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSI   92 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~   92 (317)
                      ...++.++..++|+|.|.-....+-+|+|||+ ++++....+...+...|+..++......
T Consensus       232 ~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~f  291 (473)
T PLN03074        232 LVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-KFKYIYLAATLYVLTLTLPSAAAVYWAF  291 (473)
T ss_pred             HHHHHHHHHHHHHHhcccccHHHHHHhccChh-cccchHHHHHHHHHHHHHHHHHeeeeee
Confidence            34577788889999999999999999999995 5999888888888888888766665555

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=96.64  E-value=0.14  Score=48.35  Aligned_cols=122  Identities=9%  Similarity=-0.003  Sum_probs=80.6

Q ss_pred             HHHHHhHhhhhhhccccccchhhhh----cc------CcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCC
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEE----TK------GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSN  103 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E----~k------~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~  103 (317)
                      .+..++...+++|.=.-.++.+...    .+      +.+|+..|++..+..+..+.|++..++..+.+ +.+++.+...
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsL-s~~~l~~a~~  288 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTL-SPQNMAEAKA  288 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence            4778888888888777777666655    42      23578999999999999999999999999999 6777654322


Q ss_pred             cccCCchHHHHHHHHhccccCC-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145          104 ETAGAFVPAQILYDAFHGRYHN-----STGAIILLIVIWGSFFFGGLSVTTSAARVVYALS  159 (317)
Q Consensus       104 ~~~~~p~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a  159 (317)
                      ++  .+ ....+.+.+++..+.     ++...+..+...++...+-.+...+.-=.+..+.
T Consensus       289 qn--~s-~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~  346 (443)
T PRK13629        289 QN--IP-VLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLI  346 (443)
T ss_pred             hC--Cc-HHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  12 344444444332223     5566666666666666666666666655555554

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=96.56  E-value=0.0017  Score=60.94  Aligned_cols=62  Identities=11%  Similarity=0.003  Sum_probs=54.9

Q ss_pred             chHHHHHHhHhhhhhhccccccchhhhhccCccc--chhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 021145           31 KPYAVILSFLVSQYSLYGYDSAAHLTEETKGADK--TGPIAILSSIGIISIFGWALILALCFSI   92 (317)
Q Consensus        31 ~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r--~ip~ai~~~~~~~~i~yil~~~~~~~~~   92 (317)
                      +..++..++....++|.+......+.+|+|+|+|  ++.|+...+..++.++|++.........
T Consensus       190 ~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~f  253 (409)
T PF01490_consen  190 SFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIFGYLAF  253 (409)
T ss_pred             hhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhccccee
Confidence            3457999999999999999999999999999875  4669999999999999999888877766

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PRK11375 allantoin permease; Provisional

Probab=96.28  E-value=0.39  Score=46.40  Aligned_cols=136  Identities=10%  Similarity=0.014  Sum_probs=66.9

Q ss_pred             hHHHHHHhHhhhhhhc-cccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCch
Q 021145           32 PYAVILSFLVSQYSLY-GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFV  110 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~-G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~  110 (317)
                      .+.+..++...+-++. +.-..+.+++..|++ |+.-++..++..+...+..+..+......  .........    +  
T Consensus       226 ~~~~~~~i~~vig~~~~~~~~~~D~tRy~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a--~~~~g~~~~----d--  296 (484)
T PRK11375        226 GFLFLVVINAVVAVWAAPAVSASDFTQNAHSF-RAQALGQTLGLVVAYILFAVASVCIIAGA--SIHYGADTW----N--  296 (484)
T ss_pred             HHHHHHHHHHHHHHHHHHHccccchhcccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCCcC----C--
Confidence            4555555544444454 444677888888886 44556777666665554432222221111  001111111    1  


Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHH
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGL-SVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAA  189 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~  189 (317)
                      ..+.+.+.     ++.....+..+..+++..++.. ...++.+--+     ...+|  |+.   |.|     ++.++.++
T Consensus       297 p~~i~~~~-----~~~~~~~~a~l~~v~a~~~tN~~~N~ys~~~~l-----~~l~p--k~i---~~~-----~~~~i~~i  356 (484)
T PRK11375        297 VLDIVQRW-----DSLFASFFAVLVILMTTISTNATGNIIPAGYQI-----AALAP--TKL---TYK-----NGVLIASI  356 (484)
T ss_pred             HHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHhhcccHHHHH-----HHhCc--Ccc---chh-----hHHHHHHH
Confidence            33444443     2233444555566666666654 4555554333     45677  543   312     35666666


Q ss_pred             HHHHHHh
Q 021145          190 ICIILGL  196 (317)
Q Consensus       190 i~~~~~~  196 (317)
                      ++.++..
T Consensus       357 ig~~~~p  363 (484)
T PRK11375        357 ISLLICP  363 (484)
T ss_pred             HHHHhcc
Confidence            6655543

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=96.19  E-value=0.12  Score=48.69  Aligned_cols=61  Identities=8%  Similarity=-0.023  Sum_probs=54.6

Q ss_pred             HHHHHHhHhhhhhhccccccchhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQ   93 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~   93 (317)
                      .+++.++....++|...+..-..-+|.|||+ |++.+....+...+.++|......-....+
T Consensus       194 ~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg  255 (411)
T KOG1305|consen  194 SSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLFGYLTFG  255 (411)
T ss_pred             hhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHhhhheec
Confidence            3599999999999999999999999999996 789999999999999999988877777663

>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V))

Probab=96.19  E-value=0.47  Score=44.84  Aligned_cols=41  Identities=22%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVY  156 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~  156 (317)
                      +....++.+     |+.+..++.+.+.++|+.+..+...+++..+.
T Consensus       263 L~~i~~~~~-----G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~  303 (427)
T PF05525_consen  263 LSQIANHLF-----GSAGQILLGIIVFLACLTTAIGLISACAEYFS  303 (427)
T ss_pred             HHHHHHHHc-----ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666665     45588999999999999999999999998763

They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=96.00  E-value=1.6  Score=42.14  Aligned_cols=84  Identities=12%  Similarity=0.025  Sum_probs=49.7

Q ss_pred             ccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHHHHH
Q 021145           59 TKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIVIWG  138 (317)
Q Consensus        59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  138 (317)
                      .||+ |+..|+..++......+++...........-..+..+.+.     . +.....+.     .+++...++..+++.
T Consensus       263 aks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~~~~~~~-----~-~p~l~~~~-----lp~~l~gl~~a~~~a  330 (483)
T PRK09442        263 YKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPDLTVPDK-----V-IPTLMLKV-----LPPFAAGIFLAAPMA  330 (483)
T ss_pred             cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-----h-HHHHHHHH-----cCHHHHHHHHHHHHH
Confidence            6675 6788888888776666665444332111100011112221     2 33455554     367888888888888


Q ss_pred             HHHHHHHHHHHhhhhh
Q 021145          139 SFFFGGLSVTTSAARV  154 (317)
Q Consensus       139 ~~~~~~~~~~~~~sR~  154 (317)
                      +.+++..+.+.+.+-.
T Consensus       331 A~mST~~s~l~~~ss~  346 (483)
T PRK09442        331 AIMSTVDSQLLQSSST  346 (483)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9998888888766553

>TIGR02119 panF sodium/pantothenate symporter

Probab=95.58  E-value=2.4  Score=40.83  Aligned_cols=96  Identities=14%  Similarity=0.028  Sum_probs=56.2

Q ss_pred             cccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChh
Q 021145           48 GYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNST  127 (317)
Q Consensus        48 G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~  127 (317)
                      +.....+-.-..||+ |+..|+..++.+....++............-..++.+++.     . +.....+.+     +++
T Consensus       251 ~~p~~~~R~~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~-----~-~p~~~~~~l-----p~~  318 (471)
T TIGR02119       251 GLPQTAVRCMSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDK-----V-IPLLAIKVL-----PPI  318 (471)
T ss_pred             CchHHHHHHHhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccc-----h-HHHHHHHHc-----hHH
Confidence            333333344556774 7788999888776666655443332121100112222222     2 434554543     677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          128 GAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      ...++..+++.+.+++..+.+.+.+-.+
T Consensus       319 ~~gl~~a~llaA~mST~~s~l~~~ss~~  346 (471)
T TIGR02119       319 LAGIFLAAPMAAIMSTVNSLLLQSSSTI  346 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888899999888888776553

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=95.51  E-value=1.5  Score=39.73  Aligned_cols=89  Identities=12%  Similarity=0.100  Sum_probs=66.5

Q ss_pred             ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCCh
Q 021145           47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS  126 (317)
Q Consensus        47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  126 (317)
                      ........+++|+|++ |+..++-..+-++.+++..+.+..+.... |  ++.+.+-     | ...++++.      ++
T Consensus       193 ~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l~nlsLi~~~-~--~v~~~dI-----P-~l~i~~~~------~~  256 (349)
T COG3949         193 VAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFLINLSLIALY-D--KVVNYDI-----P-LLTIAKNF------SP  256 (349)
T ss_pred             hHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHHHHHHHHhhc-c--hhhccCC-----c-HHHHHHhc------cH
Confidence            4455567788999995 77888888888888888888888887776 3  4444443     7 77777765      46


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021145          127 TGAIILLIVIWGSFFFGGLSVTTSA  151 (317)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
                      ....++.+.+.....++..+.+++.
T Consensus       257 ~i~lvm~vIi~~~IytT~vg~iy~l  281 (349)
T COG3949         257 LIGLVMSVIIWLEIYTTTVGLIYGL  281 (349)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888888888888773

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=95.31  E-value=0.32  Score=44.23  Aligned_cols=116  Identities=12%  Similarity=-0.022  Sum_probs=83.1

Q ss_pred             CchHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145           30 SKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF  109 (317)
Q Consensus        30 ~~~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p  109 (317)
                      .+...++.+.....+.|.|+|....+...+|||+ +..|....+...+++.|.+..+...++. +++...+...     |
T Consensus       172 ~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~~~~~~~~~~~~~i~vf-G~~~~~~~~~-----P  244 (320)
T PF03845_consen  172 SGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILISGLFLLFIIFITIGVF-GPELAKKLTY-----P  244 (320)
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHhc-CHHHHhceec-----H
Confidence            3444588889999999999999999999999975 4789999999999999999999999999 6766655443     6


Q ss_pred             hHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          110 VPAQILYDAF-HGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       110 ~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                       .....+..- +..  -+-.-.++...-..+.+......+++.++.+
T Consensus       245 -~~~~~~~i~i~~f--ieRld~~~i~~w~~~~~~~~~~~~~~~~~~~  288 (320)
T PF03845_consen  245 -VLELARSIEIGDF--IERLDSIFILIWIIGIFIKISLYLYAASEGL  288 (320)
T ss_pred             -HHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             655555431 000  0113334444555555666667777777765

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PTZ00206 amino acid transporter; Provisional

Probab=94.81  E-value=2.3  Score=40.99  Aligned_cols=60  Identities=8%  Similarity=-0.089  Sum_probs=53.2

Q ss_pred             HHHHHhHhhhhhhccccccchhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021145           34 AVILSFLVSQYSLYGYDSAAHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQ   93 (317)
Q Consensus        34 ~~~~a~~~~~~af~G~e~~~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~   93 (317)
                      ..+.++....|+|.+.......-+|+|||. |+..+.+..+..++.++|.+..+......+
T Consensus       257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG  317 (467)
T PTZ00206        257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFTMYVLTAFFGYMDFG  317 (467)
T ss_pred             HHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence            478899999999999999999999999964 778899999999999999998888777773

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=94.50  E-value=1.5  Score=42.52  Aligned_cols=32  Identities=19%  Similarity=0.010  Sum_probs=26.5

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      .+++...++..+++.+..++..+.+.+.+-.+
T Consensus       315 ~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~  346 (487)
T TIGR02121       315 FHPWIAGILLAAILAAIMSTISSQLLVSSSAL  346 (487)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888888899999999999998887654

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>PRK10484 putative transporter; Provisional

Probab=94.39  E-value=4.4  Score=39.57  Aligned_cols=83  Identities=14%  Similarity=0.038  Sum_probs=47.9

Q ss_pred             ccCcccchhhHHHHHHHHHHHHHHHHHH---HHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCChhHHHHHHHH
Q 021145           59 TKGADKTGPIAILSSIGIISIFGWALIL---ALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV  135 (317)
Q Consensus        59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~  135 (317)
                      .|| +|+..|+..++.....+.++...+   ......|+  ++.+++.     . +.....+.+     +++...++..+
T Consensus       270 ak~-~k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~--~~~~~d~-----~-~p~~~~~~l-----p~~l~Gl~~a~  335 (523)
T PRK10484        270 AKN-LAEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGD--GLPNADM-----A-YPTLVNDVL-----PVPLVGFFAAV  335 (523)
T ss_pred             CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCChhh-----H-HHHHHHHHc-----chhHHHHHHHH
Confidence            355 366778887776555444433221   11222211  1222222     2 334455543     66678888888


Q ss_pred             HHHHHHHHHHHHHHhhhhhh
Q 021145          136 IWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       136 ~~~~~~~~~~~~~~~~sR~l  155 (317)
                      ++.+..++..+.+.+.+-.+
T Consensus       336 ilAA~mST~~s~l~s~st~~  355 (523)
T PRK10484        336 LFGAILSTFNGFLNSASTLF  355 (523)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888989888888887654

>PF13906 AA_permease_C: C-terminus of AA_permease

Probab=94.28  E-value=0.13  Score=33.16  Aligned_cols=50  Identities=10%  Similarity=0.102  Sum_probs=39.7

Q ss_pred             cccCCchhHHHHHHHHHHHHHHHHhhCCCCCCCCCCCccchHHHHHHHHHHHhhheeeeccce
Q 021145          240 FYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWWLLDARKW  302 (317)
Q Consensus       240 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  302 (317)
                      ||.| .-|.++.++....++++.-.-            ..+++..+++.++|.+.|+.|.+|+
T Consensus         1 F~vP-~vP~~P~~si~~ni~Lm~~L~------------~~twirf~iWl~iGl~iYf~YG~~h   50 (51)
T PF13906_consen    1 FKVP-LVPFLPALSILINIYLMAQLS------------ALTWIRFGIWLAIGLVIYFGYGIRH   50 (51)
T ss_pred             CCCC-cccHHHHHHHHHHHHHHHHhh------------HhHHHHHHHHHHHHHHHHHheeeec
Confidence            5677 778889999998888865441            1356899999999999999888775

>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2

Probab=93.99  E-value=1  Score=41.64  Aligned_cols=35  Identities=14%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 021145          124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYAL  158 (317)
Q Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~  158 (317)
                      |+++...++.++.+.+.+++......+.+|.+.+.
T Consensus       250 G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~  284 (358)
T PF01566_consen  250 GSPWARYLFAIGLFAAGFSSSITATLAGAYVLADF  284 (358)
T ss_pred             CchHHHHhHHHHHHHHHHhhHHHhccccceehHhh
Confidence            55789999999999999999999988888887544

The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane

>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members

Probab=93.54  E-value=4.3  Score=39.46  Aligned_cols=159  Identities=11%  Similarity=-0.064  Sum_probs=74.2

Q ss_pred             HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145           36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL  115 (317)
Q Consensus        36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  115 (317)
                      +..+...+.+.+|-|+.-.-.+-.  .||++.++-..-+.-+.++.-+..-+....  ++++..        +| +....
T Consensus       204 ~~~LG~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~GQgA~ll~--~p~~~~--------np-Ff~~~  270 (534)
T PF02705_consen  204 FFVLGAVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFGQGALLLS--HPEAVS--------NP-FFLLI  270 (534)
T ss_pred             hhhcchHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHccHHHHHHc--Ccchhh--------hH-HHHHh
Confidence            445667788899999876543332  346666665553333322222222222222  122221        13 33222


Q ss_pred             HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCC--ChHHHHHHHHHHHHH
Q 021145          116 YDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHK--VPSNAVWLCAAICII  193 (317)
Q Consensus       116 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~--~P~~a~~~~~~i~~~  193 (317)
                               ++|+.+-+.+...++..-+-.+.+.++--+..+.-+-|.+|+- +..+.+++..  ...-.+-....++++
T Consensus       271 ---------P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYIP~vNw~L~i~~i  340 (534)
T PF02705_consen  271 ---------PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRL-KIVHTSEKEEGQIYIPEVNWLLMIGVI  340 (534)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCce-EEEECCcccCCcEechHHHHHHHHHHH
Confidence                     3344444444444444444444455555666677788999932 2344454432  222222222233333


Q ss_pred             HHhhhcccHHHHHHHHHHHHHHHH
Q 021145          194 LGLPILKVNVVFTAITSICTIGWV  217 (317)
Q Consensus       194 ~~~~~~~~~~~~~~l~~~~~~~~~  217 (317)
                      .+++.+.+.+....-..++..+.+
T Consensus       341 ~vvl~F~~S~~la~AYGiAVt~tM  364 (534)
T PF02705_consen  341 AVVLGFRSSSNLAAAYGIAVTGTM  364 (534)
T ss_pred             hhheEECChHHHHHHHHHHHHHHH
Confidence            333345555555555554444333

; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=93.43  E-value=7.3  Score=37.05  Aligned_cols=104  Identities=11%  Similarity=0.029  Sum_probs=48.0

Q ss_pred             hHHHHHHhHhhhhhhcccccc-chhhhhccCcc-cchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCc
Q 021145           32 PYAVILSFLVSQYSLYGYDSA-AHLTEETKGAD-KTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAF  109 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~-~~~~~E~k~P~-r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p  109 (317)
                      +..+..+++.++-.+..|-.. +..+.=.|+|+ ++.-.+...+......+-+..-.+...+.++++            +
T Consensus       192 ~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~------------~  259 (442)
T COG1457         192 PLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD------------S  259 (442)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------------h
Confidence            344777777776666666443 45555555554 122233333333332222222222222221221            1


Q ss_pred             hHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          110 VPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       110 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                       ..+... .+    |+  +.....+.+.++..++..-..++.+=-.
T Consensus       260 -~~~~~~-~~----G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~  297 (442)
T COG1457         260 -IADVML-GL----GG--FGLPAILILVLGTVTTNANNLYSAGLSF  297 (442)
T ss_pred             -HHHHHH-hc----cc--HHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence             223332 22    33  5556666677777777666666655443

>PRK00701 manganese transport protein MntH; Reviewed

Probab=92.89  E-value=3.4  Score=39.45  Aligned_cols=36  Identities=14%  Similarity=0.067  Sum_probs=21.3

Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSA  151 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (317)
                      ..+..++.+    | ++...++.++.+.+.+.+......+.
T Consensus       296 ~a~~L~p~~----G-~~a~~lFaiGL~aag~sS~i~~~~a~  331 (439)
T PRK00701        296 AYLLLSPLL----G-AAAATLFGIALLASGLSSTVVGTLAG  331 (439)
T ss_pred             HHHHHHHHH----h-HHHHHHHHHHHHHhHhHHHhHHHHHH
Confidence            334455554    3 56778888887777666655544333

>PRK12488 acetate permease; Provisional

Probab=92.69  E-value=11  Score=37.11  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=20.8

Q ss_pred             hhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHH
Q 021145           44 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGW   82 (317)
Q Consensus        44 ~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yi   82 (317)
                      +.+.|.....+=-=-.||+ |+..|+..++.....++|.
T Consensus       272 lg~~~~p~~~qR~~aaks~-k~ar~s~~~~~~~~~~~~~  309 (549)
T PRK12488        272 FGTAGLPHILMRFFTVSDA-REARKSVLYATGFIGYFYL  309 (549)
T ss_pred             HHhccCcHHHHHhhcCCCH-HHHHHHHHHHHHHHHHHHH
Confidence            3444543333222234664 7788888888655555444

>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]

Probab=92.50  E-value=9.4  Score=35.82  Aligned_cols=40  Identities=15%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      +.+..++.+     |+.+..++.+.+.++|+.+..+.+.+++-..
T Consensus       265 L~~~s~~~f-----G~~G~~lL~~iv~lACLTTaiGLi~a~aefF  304 (431)
T COG1114         265 LSAYSQHLF-----GSYGSILLGLIVFLACLTTAVGLIVACAEFF  304 (431)
T ss_pred             HHHHHHHHh-----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555     3447889999999999999999999988553

>TIGR00813 sss transporter, SSS family

Probab=91.97  E-value=2  Score=40.42  Aligned_cols=87  Identities=16%  Similarity=0.035  Sum_probs=51.0

Q ss_pred             ccCcccchhhHHHHHHHHHHHHHHHHHHHHHhh---ccC-chhhhc---CCCcccCCchHHHHHHHHhccccCChhHHHH
Q 021145           59 TKGADKTGPIAILSSIGIISIFGWALILALCFS---IQD-FSYLYD---KSNETAGAFVPAQILYDAFHGRYHNSTGAII  131 (317)
Q Consensus        59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~---~~~-~~~~~~---~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~  131 (317)
                      .|| +|+.+|+...+.+...+.+++..+.....   .++ ..+...   .+.   ... +.....+.+     +++...+
T Consensus       229 ~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~---~~~-~p~~~~~~l-----p~~l~gl  298 (407)
T TIGR00813       229 AKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNS---DQA-YPLLVQELM-----PPGLAGL  298 (407)
T ss_pred             cCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCCh---hhH-HHHHHHHHc-----CcchHHH
Confidence            355 47788999888777666655443322222   211 011110   011   112 334454443     6778888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          132 LLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      +..+++.+.+++..+...+.+-.+
T Consensus       299 ~~agilaA~mST~~s~l~a~ss~~  322 (407)
T TIGR00813       299 FLAAILAAVMSTLSSQLNSASTVF  322 (407)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHH
Confidence            888899999999888888876664

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=91.68  E-value=1  Score=42.33  Aligned_cols=32  Identities=13%  Similarity=0.009  Sum_probs=25.9

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      .+++...++..+++.+..++..+.+.+.+-.+
T Consensus       289 ~p~~~~gl~~~~~~aA~~ST~~s~l~a~ss~~  320 (406)
T PF00474_consen  289 LPPGLAGLFLAGILAAIMSTADSLLLAISSIF  320 (406)
T ss_dssp             S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHhhhHHHHHHHhhhhhhh
Confidence            46778888888889999999999998887765

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=89.32  E-value=22  Score=34.50  Aligned_cols=42  Identities=17%  Similarity=0.063  Sum_probs=30.8

Q ss_pred             HHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 021145          111 PAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYA  157 (317)
Q Consensus       111 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~  157 (317)
                      +.......+     ++|...++..+.+.+..++..+.....+-.+-+
T Consensus       314 ~~~l~~~~~-----p~~~~g~~~~ailaAvmSt~ss~ll~~ss~~t~  355 (493)
T COG0591         314 FPYLILALF-----PPWIAGLLLAAILAAVMSTASSQLLVASSAITR  355 (493)
T ss_pred             HHHHHHHHC-----hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            445555554     678888888888888888888888887766543

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=88.95  E-value=25  Score=34.63  Aligned_cols=90  Identities=12%  Similarity=0.040  Sum_probs=42.6

Q ss_pred             ccCcccchhhHHHHHHHHHHHHHHHHHHHHHh---hccCchhhhcCCCcccCCch-HHHHHHHHhccccCChhHHHHHHH
Q 021145           59 TKGADKTGPIAILSSIGIISIFGWALILALCF---SIQDFSYLYDKSNETAGAFV-PAQILYDAFHGRYHNSTGAIILLI  134 (317)
Q Consensus        59 ~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~---~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~~g~~~~~~~~~~  134 (317)
                      .|| +|+..|+..++......+|+...+....   ..++..+..+......+.++ ....+...+    ++.++..++..
T Consensus       287 aks-~k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~l~glv~A  361 (549)
T TIGR02711       287 VSD-AKEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAV----GGNLFLGFISA  361 (549)
T ss_pred             cCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHH----ccHHHHHHHHH
Confidence            355 4778899988877777776554322211   22111011110000000010 111121222    45666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 021145          135 VIWGSFFFGGLSVTTSAAR  153 (317)
Q Consensus       135 ~~~~~~~~~~~~~~~~~sR  153 (317)
                      +.+.+.+++..+.+.+.+-
T Consensus       362 ~~~AA~mST~~s~l~a~st  380 (549)
T TIGR02711       362 VAFATILAVVAGLTLAGAS  380 (549)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666677777666666653

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=87.57  E-value=10  Score=35.81  Aligned_cols=103  Identities=18%  Similarity=0.102  Sum_probs=59.1

Q ss_pred             ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHHHhccccCCh
Q 021145           47 YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNS  126 (317)
Q Consensus        47 ~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~  126 (317)
                      .|....++-+.|++||.|+=-.+++-..+=..+...+..++....- .++...+.+    +    .......+.+.+| +
T Consensus       236 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG-~~~~~~~~~----g----~~l~~~Af~~~~g-~  305 (416)
T PF01235_consen  236 LGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTG-VWSWGSGLE----G----AALTQAAFSTVLG-S  305 (416)
T ss_pred             CChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccC-CCCCCCcch----H----HHHHHHHHHHhhh-h
Confidence            4666667777899999886655555444433333322222222211 121111111    1    1222333333223 6


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Q 021145          127 TGAIILLIVIWGSFFFGGLSVTTSAARVVYALS  159 (317)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a  159 (317)
                      +...++.+++++-.++++.++.+..-|-+..+-
T Consensus       306 ~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~  338 (416)
T PF01235_consen  306 WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLF  338 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            788999999999999999999999988775543

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues

Probab=87.27  E-value=5.1  Score=33.95  Aligned_cols=12  Identities=8%  Similarity=0.481  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHHH
Q 021145          184 VWLCAAICIILG  195 (317)
Q Consensus       184 ~~~~~~i~~~~~  195 (317)
                      +.+.++.+.+..
T Consensus        87 L~~~~if~~~~g   98 (206)
T PF06570_consen   87 LLFFGIFSLLFG   98 (206)
T ss_pred             HHHHHHHHHHHH
Confidence            333333343333

However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).

>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]

Probab=86.37  E-value=17  Score=33.66  Aligned_cols=97  Identities=14%  Similarity=0.088  Sum_probs=61.4

Q ss_pred             hhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHh---hccCchhhhcCCCcccCCchHHHHHHHHhc
Q 021145           44 YSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCF---SIQDFSYLYDKSNETAGAFVPAQILYDAFH  120 (317)
Q Consensus        44 ~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~  120 (317)
                      +...|.-....-+-..|| +|.+.++|.++..+++++-+.+-.+-..   +.|+.++   .+.     - +...+.+.+ 
T Consensus       246 ~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graViPdlt~---~D~-----V-ip~lalkvl-  314 (473)
T COG4145         246 FGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVIPDLTV---VDL-----V-IPTLALKVL-  314 (473)
T ss_pred             HHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcCCCCc---cch-----h-HHHHHHHhc-
Confidence            344454444455555688 5889999999999998877665444332   2333222   222     1 445666665 


Q ss_pred             cccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       121 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                          +|....++..+.+.+..++.++...-.|-.+
T Consensus       315 ----pp~~agifl~apmaAiMSTIds~L~~~sstl  345 (473)
T COG4145         315 ----PPFAAGIFLAAPMAAIMSTINSQLLQSSSTL  345 (473)
T ss_pred             ----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                5666777777777888888888877666544

>PRK09395 actP acetate permease; Provisional

Probab=85.54  E-value=39  Score=33.27  Aligned_cols=23  Identities=17%  Similarity=0.260  Sum_probs=14.3

Q ss_pred             ccCcccchhhHHHHHHHHHHHHHH
Q 021145           59 TKGADKTGPIAILSSIGIISIFGW   82 (317)
Q Consensus        59 ~k~P~r~ip~ai~~~~~~~~i~yi   82 (317)
                      .|| +|+..|+..++......+++
T Consensus       289 aks-~k~ar~~~~~~~~~~~~~~~  311 (551)
T PRK09395        289 VSD-AKEARKSVFYATGFIGYFYI  311 (551)
T ss_pred             cCC-hHHHHHhHHHHHHHHHHHHH
Confidence            355 36788888877655544443

>TIGR00794 kup potassium uptake protein

Probab=85.42  E-value=12  Score=37.58  Aligned_cols=155  Identities=10%  Similarity=-0.101  Sum_probs=72.2

Q ss_pred             HHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHH
Q 021145           37 LSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILY  116 (317)
Q Consensus        37 ~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  116 (317)
                      ..+..++.+.+|-|+.-.-.+-.  .+|+|.++-..-+.-+.++.-+..-++...  ++++..        .| +.... 
T Consensus       242 ~~LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~--~p~~~~--------Np-Ff~~~-  307 (688)
T TIGR00794       242 VSLGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSK--HPEAIK--------NP-FFLSI-  307 (688)
T ss_pred             eeccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhc--Ccchhc--------Cc-HHHhC-
Confidence            34556777888999875444443  356676665533333333222223332222  222221        24 33221 


Q ss_pred             HHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHH--HHHHHHHHHHHH
Q 021145          117 DAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSN--AVWLCAAICIIL  194 (317)
Q Consensus       117 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~--a~~~~~~i~~~~  194 (317)
                              ++|..+-+.+...++.+-+-.+.+.+.=.+..+.-+-|.+|.- +..+.+++.+-=++  .+-....++++.
T Consensus       308 --------P~~~~~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~-~I~hTS~~~~GQIYiP~vNw~Lmv~~i~  378 (688)
T TIGR00794       308 --------PDWALWPLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRV-KIIHTSEKYHGQIYIPFVNWLLMLGVIA  378 (688)
T ss_pred             --------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCCccCCceeeHHHHHHHHHHHHh
Confidence                    3444444444444444444444455555566667788999932 23445544332222  222222223333


Q ss_pred             HhhhcccHHHHHHHHHHHHH
Q 021145          195 GLPILKVNVVFTAITSICTI  214 (317)
Q Consensus       195 ~~~~~~~~~~~~~l~~~~~~  214 (317)
                      +++.+.+.+.+..-..++..
T Consensus       379 vvl~F~~S~~la~AYGiaVt  398 (688)
T TIGR00794       379 VTAGFRDTNNLGAAYGIAVT  398 (688)
T ss_pred             eeEEecChHHHHHHhhhhhh
Confidence            33335555555544444433

Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.

>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]

Probab=85.09  E-value=8.6  Score=31.76  Aligned_cols=21  Identities=19%  Similarity=0.388  Sum_probs=12.4

Q ss_pred             CCCChHH-----HHHHHHHHHHHHHh
Q 021145          176 KHKVPSN-----AVWLCAAICIILGL  196 (317)
Q Consensus       176 r~~~P~~-----a~~~~~~i~~~~~~  196 (317)
                      |+.-|+.     ++++.++++++-.+
T Consensus        89 kNtdp~lm~lDssLl~lg~~aLlsgi  114 (226)
T COG4858          89 KNTDPWLMWLDSSLLFLGAMALLSGI  114 (226)
T ss_pred             cCCCceEEEecccHHHHHHHHHHHHH
Confidence            4445553     66777766665554

>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]

Probab=81.85  E-value=48  Score=31.44  Aligned_cols=29  Identities=10%  Similarity=0.101  Sum_probs=17.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 021145          126 STGAIILLIVIWGSFFFGGLSVTTSAARV  154 (317)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  154 (317)
                      +....++.++.+.+..++.....++....
T Consensus       284 ~~~~~lF~v~llasg~~s~~~~~~a~~~~  312 (416)
T COG1914         284 SAAFVLFGVALLAAGLSSTVVATYAGQIV  312 (416)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHhhhhHHH
Confidence            55666666666666666665555555443

>PLN00149 potassium transporter; Provisional

Probab=80.80  E-value=32  Score=35.13  Aligned_cols=155  Identities=9%  Similarity=-0.103  Sum_probs=68.6

Q ss_pred             HhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHHHH
Q 021145           38 SFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYD  117 (317)
Q Consensus        38 a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  117 (317)
                      .+..++.+.+|-|+.-.-.+-  -.+|.|.+|-...+.=+.++.-+...++...-  ++...+.     ..| +   +..
T Consensus       273 ~LGgV~L~iTG~EALyADlGH--F~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~--p~~~~~~-----~~p-F---y~~  339 (779)
T PLN00149        273 SLGGILLCITGSEAMFADLGH--FSQLSIKIAFTSLVYPSLILAYMGQAAYLSKH--HVIESDY-----RIG-F---YVS  339 (779)
T ss_pred             eecchhhcccchhhhhhcccC--CCccceeeeehhhHHHHHHHHhhhHHHHHhcC--cchhccc-----cCc-H---HHh
Confidence            455667788899987444443  34566766655433333332222233333222  2222121     124 3   222


Q ss_pred             HhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH--HH
Q 021145          118 AFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII--LG  195 (317)
Q Consensus       118 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~--~~  195 (317)
                      .      +++..+-+.+...++.+-+-.+.+.+.-.+..+.-+-|.+|.- +.-|++++..-=++.=.+..++.+.  .+
T Consensus       340 i------P~~~~~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrv-kIvhTS~~~~GQIYIP~vNw~Lmv~~i~v  412 (779)
T PLN00149        340 V------PEKLRWPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKV-KIVHTSSKIHGQIYIPEINWTLMLLCLAV  412 (779)
T ss_pred             C------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-eEEecCcccCCceeeHHHHHHHHHHHHhh
Confidence            2      3334443333333333333344444444555666677999932 2345554444333333333333222  22


Q ss_pred             hhhcccHHHHHHHHHHH
Q 021145          196 LPILKVNVVFTAITSIC  212 (317)
Q Consensus       196 ~~~~~~~~~~~~l~~~~  212 (317)
                      .+.+.+......-..++
T Consensus       413 v~~F~~s~~l~~AYGiA  429 (779)
T PLN00149        413 TVGFRDTKRLGNASGLA  429 (779)
T ss_pred             eeEecChHHHHHHhhhh
Confidence            22344444444444433

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=80.51  E-value=59  Score=31.60  Aligned_cols=32  Identities=19%  Similarity=0.004  Sum_probs=26.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      .+++...++..+++.+.+++..+.+.+.+-.+
T Consensus       322 lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~  353 (502)
T PRK15419        322 FNPWIAGILLSAILAAVMSTLSCQLLVCSSAI  353 (502)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36778888999999999999999998887553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	1e-10
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	6e-08
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	6e-06

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 36/283 (12%), Positives = 96/283 (33%), Gaps = 15/283 (5%)

Query: 16  FTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIG 75
               EM  +           ++ F+    S  G +++A    E     +  P+A+L  + 
Sbjct: 184 PVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMV 243

Query: 76  IISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFHGRYHNSTGAIILLIV 135
                     L++   I       ++ N +AG      +L          +   I  L++
Sbjct: 244 AAICLSSVGGLSIAMVIP-----GNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLL 298

Query: 136 IWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICIILG 195
           +         S     +R +Y  ++   +P  + + +++ K+ VP   V     I  I  
Sbjct: 299 L--GVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLVITSIAL 353

Query: 196 LPIL----KVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAG-PFYLGKASRPIC 250
           + +       N+ F    ++  + ++  Y +     +V+  +  +    F +        
Sbjct: 354 IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKL 413

Query: 251 LIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIML 293
           ++A + +  +   F++    P +    +       + +  +++
Sbjct: 414 VVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLVVSFLVV 456

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 1   MLPLVALTTQSASYVFTHFEMSPEATGISSKPYAVILSFLVSQYSLYGYDSAAHLTEETK 60
           ++P+V +      +      M+           A+  +  V+ +S  G +SA+      K
Sbjct: 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK 218

Query: 61  GADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQILYDAFH 120
              +  PIA +  + I ++  + L       +   + L   ++    A            
Sbjct: 219 NPKRNVPIATIGGVLIAAVC-YVLSTTAIMGMIPNAALRVSASPFGDAAR---------- 267

Query: 121 GRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVP 180
                 T   I+               T  A +   A + D   P   I+ +++ K   P
Sbjct: 268 -MALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTP 323

Query: 181 SNAVWLCAAICIILGLPILKVNVV--FTAITSICTIGWVGGYAVPIFARMVMAEQKFNAG 238
              + +   +  I  L  +  N    F  ++S+  I  +  Y     A +++    F   
Sbjct: 324 VAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKA 383

Query: 239 -PFYLGKASRPICLIAFLWICYTCSVFLLPTFYPISWDTFNYAPVALGVGLGLIMLWW 295
            P YL         +  +   Y   ++ +            ++ V L V   +  L +
Sbjct: 384 RPAYL--------AVTTIAFLY--CIWAV---VGSGAKEVMWSFVTLMVITAMYALNY 428

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 32/173 (18%), Positives = 61/173 (35%), Gaps = 29/173 (16%)

Query: 48  GYDSAAHLTEETKGADKTGPIAILSSIGIISIF--GWALILALCFSIQDFSYLYDKSNET 105
           G+    + +E  +   K  P AI  SI I+     G A+       I +      K++E 
Sbjct: 203 GFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDEL----IKASEN 258

Query: 106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIP 165
           A A      L +          G +++ I    S      +     A V Y+L++D  +P
Sbjct: 259 ALAVAAKPFLGNL---------GFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP 309

Query: 166 --FSSIWRQLHPKHKVPSNAVWLCAAICIILG--LPILKVNVVFTAITSICTI 214
             F              +  +++ +A+ ++      +  V     +ITS   +
Sbjct: 310 EFFE------RKVWFKSTEGLYITSALGVLFALLFNMEGV----ASITSAVFM 352

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	100.0
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	100.0
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	99.96
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	95.43
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	95.39
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	92.87
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	84.99

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=100.00  E-value=9.5e-34  Score=272.09  Aligned_cols=249  Identities=15%  Similarity=0.115  Sum_probs=206.7

Q ss_pred             HHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHHHHH
Q 021145           36 ILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPAQIL  115 (317)
Q Consensus        36 ~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  115 (317)
                      +.++...+|+|.|+|.+++++||+|||+|++||++..++.++.++|++.+++....+ +.++....+      + ..+.+
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~------~-~~~~~  275 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVI-PGNEINLSA------G-VMQTF  275 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTS-CTTSCCSSS------T-HHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeec-CHhhccccc------h-HHHHH
Confidence            345677899999999999999999999999999999999999999999999999999 555553322      3 44556


Q ss_pred             HHHhccccC--ChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHHH
Q 021145          116 YDAFHGRYH--NSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICII  193 (317)
Q Consensus       116 ~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~~  193 (317)
                      ....+.. |  .++...++.+..+++.+++.++++++.+|+++++||||.+|  ++|+|+| |+++|+++++++.++..+
T Consensus       276 ~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a~ardg~lP--~~~~~~~-~~~~P~~ai~~~~~~~~l  351 (511)
T 4djk_A          276 TVLMSHV-APEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLP--AAFAKMN-KNGVPVTLVISQLVITSI  351 (511)
T ss_dssp             HHHHSSS-CSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTCHHHHGGGCS--SSCCCCC-SSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHh-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc--HHHHhcC-CCCCcHHHHHHHHHHHHH
Confidence            5655444 5  57788999999999999999999999999999999999999  9999999 679999999998544333


Q ss_pred             HHhhhccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-CcCCCcccC--Cch-hHHHHHHHHHHHHHHHHh
Q 021145          194 LGLPILKV-----NVVFTAITSICTIGWVGGYAVPIFARMVMAEQK-FNAGPFYLG--KAS-RPICLIAFLWICYTCSVF  264 (317)
Q Consensus       194 ~~~~~~~~-----~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~-~~~~~~~~~--~~~-~~i~~~~~~~~~~~~~~~  264 (317)
                      .. +..++     .+.++.+.++.++..++.|.+++.+.+++||++ +.+||||.|  +++ +.+++++++++++.++..
T Consensus       352 ~~-~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (511)
T 4djk_A          352 AL-IILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVS  430 (511)
T ss_dssp             HH-HHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HH-HHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHee
Confidence            22 23444     677999999999999999999999888776654 567899998  344 568899999999999999


Q ss_pred             hCCCCCCCCCCCccchHHHHHHHHHHHhhheee
Q 021145          265 LLPTFYPISWDTFNYAPVALGVGLGLIMLWWLL  297 (317)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  297 (317)
                      ++|...+.+.+.+++.....++++++..++|+.
T Consensus       431 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  463 (511)
T 4djk_A          431 FLPPDNIQGDSTDMYVELLVVSFLVVLALPFIL  463 (511)
T ss_dssp             TCCCSCSTTCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             eeCCccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999888877888888887777777777777665

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=100.00  E-value=6.5e-32  Score=254.92  Aligned_cols=248  Identities=17%  Similarity=0.112  Sum_probs=199.7

Q ss_pred             hHHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchH
Q 021145           32 PYAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVP  111 (317)
Q Consensus        32 ~~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~  111 (317)
                      ..+++.++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+++..... |++++.+.+.     | +
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~-~~~~~~~~~~-----p-~  262 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMI-PNAALRVSAS-----P-F  262 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CTTTSCSTTC-----T-H
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHHhccCc-----H-H
Confidence            4468999999999999999999999999999999999999999999999999999999998 6676654443     7 8


Q ss_pred             HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHH
Q 021145          112 AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAIC  191 (317)
Q Consensus       112 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~  191 (317)
                      .+.+++..     +++...++.++.+++.+++.++.+++.+|++++++|||.+|  ++|+|+| |+++|+++++++.+++
T Consensus       263 ~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP--~~~~~~~-~~~~P~~a~~~~~~~~  334 (445)
T 3l1l_A          263 GDAARMAL-----GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFP--PIFARVN-KAGTPVAGLIIVGILM  334 (445)
T ss_dssp             HHHHHHHH-----CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSC--GGGGCCC-TTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--HHHHhcC-CCCCCHHHHHHHHHHH
Confidence            88888775     56688899999999999999999999999999999999999  9999999 6799999999999988


Q ss_pred             HHHHhhhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcCCCcccCCchhHHHHHHHHHHHHHHHHhhCCCC
Q 021145          192 IILGLPILKV--NVVFTAITSICTIGWVGGYAVPIFARMVMAEQKFNAGPFYLGKASRPICLIAFLWICYTCSVFLLPTF  269 (317)
Q Consensus       192 ~~~~~~~~~~--~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  269 (317)
                      .++.++...+  .+.++.+.++.++..++.|.+++++.+++|||++++   |.| ..+.++.++.+.+++.....     
T Consensus       335 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~---r~~-~~~~~~~~~~~~~~~~~~~~-----  405 (445)
T 3l1l_A          335 TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGK---ARP-AYLAVTTIAFLYCIWAVVGS-----  405 (445)
T ss_dssp             HHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSGG---GCT-TTHHHHHHHHHHHHHHHHHS-----
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---ccc-hhHHHHHHHHHHHHHHHHHc-----
Confidence            8777644333  356889999999999999999999999887765422   444 66778888888777765432     


Q ss_pred             CCCCCCCccchHHHHHHHHHHHhhheeeeccceecCCcccc
Q 021145          270 YPISWDTFNYAPVALGVGLGLIMLWWLLDARKWFTGPVRNI  310 (317)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  310 (317)
                            ++ .......++.+++..+|..++||+++++..+.
T Consensus       406 ------~~-~~~~~~~~~~~~g~~~y~~~~~~~~~~~~~~~  439 (445)
T 3l1l_A          406 ------GA-KEVMWSFVTLMVITAMYALNYNRLHKNPYPLD  439 (445)
T ss_dssp             ------CH-HHHHHHHHHHHHHHHHHHHHHSTTCCCSSCCC
T ss_pred             ------CH-HHHHHHHHHHHHHHHHHHHHhhhcccCccccc
Confidence                  11 12344556666777777666666555444443

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=99.96  E-value=2.3e-28  Score=230.60  Aligned_cols=182  Identities=16%  Similarity=0.202  Sum_probs=159.7

Q ss_pred             HHHHHHhHhhhhhhccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHhhccCchhhhcCCCcccCCchHH
Q 021145           33 YAVILSFLVSQYSLYGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCFSIQDFSYLYDKSNETAGAFVPA  112 (317)
Q Consensus        33 ~~~~~a~~~~~~af~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  112 (317)
                      .+++.++...+|+|.|+|.+++++||+|||+||+||++..+..++.++|++.+++..... |++++.+.+.    .| +.
T Consensus       188 ~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~-~~~~l~~~~~----~~-~~  261 (444)
T 3gia_A          188 SGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNL-PIDELIKASE----NA-LA  261 (444)
T ss_dssp             HHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CHHHHHHTGG----GH-HH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHhcccc----hh-HH
Confidence            468899999999999999999999999999999999999999999999999999999988 7777755432    25 66


Q ss_pred             HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCccccceeccCCCCChHHHHHHHHHHHH
Q 021145          113 QILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVVYALSRDKGIPFSSIWRQLHPKHKVPSNAVWLCAAICI  192 (317)
Q Consensus       113 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~~~~~~~~~~r~~~P~~a~~~~~~i~~  192 (317)
                      +.+++..     +++...++.++.+++.+++.++.+++.+|++++++|||.+|  ++|+|+| | ++|+++++++.+++.
T Consensus       262 ~~~~~~~-----g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~f~~~~-~-~~P~~a~~~~~~~~~  332 (444)
T 3gia_A          262 VAAKPFL-----GNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELP--EFFERKV-W-FKSTEGLYITSALGV  332 (444)
T ss_dssp             HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCC--SSCCTTS-C-CSCTHHHHHHHHHHH
T ss_pred             HHHHHHh-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--HHHhCCC-C-CCCcHHHHHHHHHHH
Confidence            7776665     46678899999999999999999999999999999999999  9999988 4 469999999999988


Q ss_pred             HHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 021145          193 ILGLPILKVNVVFTAITSICTIGWVGGYAVPIFARMVMAEQK  234 (317)
Q Consensus       193 ~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~  234 (317)
                      ++.++.     .++.+.++.+.+.++.|.+.+++.+++||++
T Consensus       333 ~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~  369 (444)
T 3gia_A          333 LFALLF-----NMEGVASITSAVFMVIYLFVILSHYILIDEV  369 (444)
T ss_dssp             HHHHHS-----CHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHc-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            877632     3678899999999999999999988777765

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=95.43  E-value=0.16  Score=48.25  Aligned_cols=32  Identities=9%  Similarity=-0.016  Sum_probs=26.8

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          124 HNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                      .+++...++..+++.+.+++..+.+.+.+-.+
T Consensus       317 lp~~l~Gl~~a~llAA~mST~ss~l~s~st~~  348 (530)
T 3dh4_A          317 LPVGVKGVVFAALAAAIVSSLASMLNSTATIF  348 (530)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            46778888888999999999999998887765

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=95.39  E-value=1.8  Score=40.64  Aligned_cols=30  Identities=13%  Similarity=0.079  Sum_probs=20.8

Q ss_pred             HHHHH-HHHHHHHHHHHHH-HHHhhhhhhhhh
Q 021145          129 AIILL-IVIWGSFFFGGLS-VTTSAARVVYAL  158 (317)
Q Consensus       129 ~~~~~-~~~~~~~~~~~~~-~~~~~sR~l~~~  158 (317)
                      ..+.. +.++++.+++... ..++.+--+...
T Consensus       298 ~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~  329 (501)
T 2jln_A          298 MAILFQVFVLLATWSTNPAANLLSPAYTLCST  329 (501)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence            56666 7777888777764 677777666554

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=92.87  E-value=0.59  Score=45.00  Aligned_cols=99  Identities=11%  Similarity=0.058  Sum_probs=56.5

Q ss_pred             hhhccccc-cchhhhhccCcccchhhHHHHHHHHHHHHHHHHHH---HHHhhccCc--------------hhhhcCCCcc
Q 021145           44 YSLYGYDS-AAHLTEETKGADKTGPIAILSSIGIISIFGWALIL---ALCFSIQDF--------------SYLYDKSNET  105 (317)
Q Consensus        44 ~af~G~e~-~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~---~~~~~~~~~--------------~~~~~~~~~~  105 (317)
                      ..+.|.+. ..+-.=+.||+ |+..|+..++.....+..++...   .......+.              .++.+++.  
T Consensus       261 ~~~~~~~q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~--  337 (593)
T 2xq2_A          261 LYYWGFNQYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADK--  337 (593)
T ss_dssp             HHHHTTTCSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGG--
T ss_pred             HHhhcCChHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhh--
Confidence            34556553 35555677885 67888888887665544442221   111110010              01111111  


Q ss_pred             cCCchHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          106 AGAFVPAQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       106 ~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                         . +.... +.     .+++...++..+.+.+..++..+.+.+.+-.+
T Consensus       338 ---~-~p~l~-~~-----lp~~l~gl~~a~llaA~mST~~s~l~a~st~~  377 (593)
T 2xq2_A          338 ---A-YPWLT-QF-----LPVGVKGVVFAALAAAIVSSLASMLNSTATIF  377 (593)
T ss_dssp             ---H-HHHHH-HT-----SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---H-HHHHH-HH-----cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               1 22333 33     46888888888999999999999888887664

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=84.99  E-value=8.2  Score=36.34  Aligned_cols=118  Identities=9%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             hHHHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHHHh-----hcc-C-chhhhcCCC
Q 021145           32 PYAVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWALILALCF-----SIQ-D-FSYLYDKSN  103 (317)
Q Consensus        32 ~~~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~~~~~~~-----~~~-~-~~~~~~~~~  103 (317)
                      ......|...++|++ .|+-....++.=.|+ +.|++|.-......-...-++..++...     ..+ + .+++.+.. 
T Consensus       241 ~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G-  318 (519)
T 2a65_A          241 PGVWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAG-  318 (519)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHhcCC-
Confidence            345678888889988 588888888887665 6788887666665554444433222211     110 1 12222222 


Q ss_pred             cccCCchH-HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          104 ETAGAFVP-AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       104 ~~~~~p~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                          .|++ ...+..++.+..+++....++-+.+++..+++..+.+-.....+
T Consensus       319 ----~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~l  367 (519)
T 2a65_A          319 ----AFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL  367 (519)
T ss_dssp             ----SSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----CCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence                0112 22333444444345555556666666666666666555554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	86.89

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.89  E-value=2.1  Score=37.99  Aligned_cols=116  Identities=9%  Similarity=0.045  Sum_probs=56.3

Q ss_pred             HHHHHhHhhhhhh-ccccccchhhhhccCcccchhhHHHHHHHHHHHHHHHH-----HHHHHhhcc--CchhhhcCCCcc
Q 021145           34 AVILSFLVSQYSL-YGYDSAAHLTEETKGADKTGPIAILSSIGIISIFGWAL-----ILALCFSIQ--DFSYLYDKSNET  105 (317)
Q Consensus        34 ~~~~a~~~~~~af-~G~e~~~~~~~E~k~P~r~ip~ai~~~~~~~~i~yil~-----~~~~~~~~~--~~~~~~~~~~~~  105 (317)
                      -...|...+++++ .|+-....++.=.|+ +.|+.|--....+.-....++.     ........+  +..+....+.  
T Consensus       239 vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~-~~n~~rda~~v~~~~~~~si~~~~~~~~~~~~~~~~~~~~~~~~~~~g--  315 (509)
T d2a65a1         239 VWIAAVGQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGA--  315 (509)
T ss_dssp             HHHHHHHHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCS--
T ss_pred             HHHHHHHHHhhhhcccCCceeeehhhccc-hhhhcccceEEEecccceeeccccchhhhhheeeeccccccccccccC--
Confidence            4566777788877 577777777776554 4556664444333332222211     111111211  1111111111  


Q ss_pred             cCCchH-HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 021145          106 AGAFVP-AQILYDAFHGRYHNSTGAIILLIVIWGSFFFGGLSVTTSAARVV  155 (317)
Q Consensus       106 ~~~p~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l  155 (317)
                         |++ ...+...+.+..+++....++-...++..+++..+.+-.....+
T Consensus       316 ---~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l  363 (509)
T d2a65a1         316 ---FNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFL  363 (509)
T ss_dssp             ---SHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHH
Confidence               212 22344455554455555666666666666666666666555554