Citrus Sinensis ID: 021148

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
cccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHccccccccccccHHHHHHHHHHHccccccccHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHcccccEEEEEEEEccccccccccccccccccccccccccccccccccc
cccHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccHHHHHHHHHccEEEEEEccHHHHHHHHHcc
mkglfkskprtpvdiVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSIlygnsesepvSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFfdyiqlpnfdIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVryfprmhveDIFYLAYQKlqgtepvtfdkisLHMVCDSHLFDAQWAIID
mkglfkskprtpvdivrqtrdliiyanrsadvreskredKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLgdilldrsnsvvmtryvssrenlRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
*************DIVRQTRDLIIYAN****************LCKNIRELKSILYGN*****VSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAII*
MKGLF**KPRTPVDIVRQTRDLII*******************LCKNIRELKSILY******PVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
******SKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
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MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMTRYVSSRENLRILMNLLRVRYFPRMHVEDIFYLAYQKLQGTEPVTFDKISLHMVCDSHLFDAQWAIID
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q9FGK3343 Putative MO25-like protei yes no 0.841 0.775 0.840 1e-134
Q9M0M4343 Putative MO25-like protei no no 0.841 0.775 0.806 1e-126
Q9ZQ77348 MO25-like protein At2g034 no no 0.841 0.764 0.655 1e-102
Q9H9S4337 Calcium-binding protein 3 yes no 0.889 0.833 0.416 7e-60
Q9DB16337 Calcium-binding protein 3 yes no 0.889 0.833 0.410 3e-59
Q9Y376341 Calcium-binding protein 3 no no 0.895 0.829 0.414 8e-56
Q29RI6341 Calcium-binding protein 3 no no 0.895 0.829 0.414 8e-56
Q06138341 Calcium-binding protein 3 no no 0.895 0.829 0.414 8e-56
O18211338 MO25-like protein 2 OS=Ca no no 0.838 0.784 0.426 5e-52
Q9P7Q8329 Mo25-like protein OS=Schi yes no 0.863 0.829 0.381 9e-48
>sp|Q9FGK3|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1 Back     alignment and function desciption
 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/269 (84%), Positives = 255/269 (94%), Gaps = 3/269 (1%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYG 57
           MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYG
Sbjct: 1   MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query: 58  NSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117
           NSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIA
Sbjct: 61  NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query: 118 SDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLP 177
           SDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLP
Sbjct: 121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query: 178 NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGD 237
           NFDIAADAAATFKELLTRHKSTVAEFL+KN DWFFA+YNSKLLESSNYITRRQA+KLLGD
Sbjct: 181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query: 238 ILLDRSNSVVMTRYVSSRENLRILMNLLR 266
           ILLDRSNS VMT+YVSSR+NLRILMNLLR
Sbjct: 241 ILLDRSNSAVMTKYVSSRDNLRILMNLLR 269

Arabidopsis thaliana (taxid: 3702)
>sp|Q9M0M4|MO25M_ARATH Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQ77|MO25L_ARATH MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1 Back     alignment and function description
>sp|Q9H9S4|CB39L_HUMAN Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3 Back     alignment and function description
>sp|Q9DB16|CB39L_MOUSE Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3 Back     alignment and function description
>sp|Q9Y376|CAB39_HUMAN Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1 Back     alignment and function description
>sp|Q29RI6|CAB39_BOVIN Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1 Back     alignment and function description
>sp|Q06138|CAB39_MOUSE Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=2 Back     alignment and function description
>sp|O18211|MO25M_CAEEL MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=3 SV=1 Back     alignment and function description
>sp|Q9P7Q8|PMO25_SCHPO Mo25-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmo25 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
225469268340 PREDICTED: putative MO25-like protein At 0.841 0.782 0.906 1e-141
449443544340 PREDICTED: putative MO25-like protein At 0.841 0.782 0.887 1e-137
255581605 445 Calcium-binding protein, putative [Ricin 0.841 0.597 0.884 1e-137
297790907343 hypothetical protein ARALYDRAFT_916635 [ 0.841 0.775 0.858 1e-135
356555740334 PREDICTED: putative MO25-like protein At 0.841 0.796 0.872 1e-134
224086468339 predicted protein [Populus trichocarpa] 0.841 0.784 0.876 1e-134
363807646334 uncharacterized protein LOC100797189 [Gl 0.841 0.796 0.864 1e-134
89257511324 Mo25 family protein [Brassica oleracea] 0.841 0.820 0.851 1e-133
217074054337 unknown [Medicago truncatula] 0.841 0.789 0.865 1e-133
357447933337 hypothetical protein MTR_2g026050 [Medic 0.841 0.789 0.865 1e-133
>gi|225469268|ref|XP_002267661.1| PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera] gi|302141642|emb|CBI18773.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 241/266 (90%), Positives = 258/266 (96%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           MKGLFKSKPRTPV++VRQTRDL+IYANRS+D RESKRE+KM+EL K IRELKSILYGNSE
Sbjct: 1   MKGLFKSKPRTPVEVVRQTRDLLIYANRSSDTRESKREEKMSELSKLIRELKSILYGNSE 60

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY 120
           +EP +EAC QLT EFF+ENTLRLLITCLPKLNLE RKDATQVVANLQRQQVHS+LIASDY
Sbjct: 61  AEPQAEACCQLTQEFFKENTLRLLITCLPKLNLETRKDATQVVANLQRQQVHSRLIASDY 120

Query: 121 LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFD 180
           LEANIDL+D+LI+GY+NTDMALHYGAMLRECIRHQ+VARYVLES HMKKFFDYIQLPNFD
Sbjct: 121 LEANIDLMDVLISGYDNTDMALHYGAMLRECIRHQTVARYVLESAHMKKFFDYIQLPNFD 180

Query: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240
           IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLES+NYITRRQAVKLLGDILL
Sbjct: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESTNYITRRQAVKLLGDILL 240

Query: 241 DRSNSVVMTRYVSSRENLRILMNLLR 266
           DRSNSVVMTRYVSSR+NLRILMNLLR
Sbjct: 241 DRSNSVVMTRYVSSRDNLRILMNLLR 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449443544|ref|XP_004139537.1| PREDICTED: putative MO25-like protein At5g47540-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255581605|ref|XP_002531607.1| Calcium-binding protein, putative [Ricinus communis] gi|223528774|gb|EEF30782.1| Calcium-binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297790907|ref|XP_002863338.1| hypothetical protein ARALYDRAFT_916635 [Arabidopsis lyrata subsp. lyrata] gi|297309173|gb|EFH39597.1| hypothetical protein ARALYDRAFT_916635 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356555740|ref|XP_003546188.1| PREDICTED: putative MO25-like protein At5g47540-like [Glycine max] Back     alignment and taxonomy information
>gi|224086468|ref|XP_002307894.1| predicted protein [Populus trichocarpa] gi|222853870|gb|EEE91417.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|363807646|ref|NP_001241904.1| uncharacterized protein LOC100797189 [Glycine max] gi|255635566|gb|ACU18133.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|89257511|gb|ABD65001.1| Mo25 family protein [Brassica oleracea] Back     alignment and taxonomy information
>gi|217074054|gb|ACJ85387.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|357447933|ref|XP_003594242.1| hypothetical protein MTR_2g026050 [Medicago truncatula] gi|355483290|gb|AES64493.1| hypothetical protein MTR_2g026050 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2168958343 AT5G47540 [Arabidopsis thalian 0.841 0.775 0.840 3.7e-119
TAIR|locus:2130774343 AT4G17270 [Arabidopsis thalian 0.841 0.775 0.806 1.1e-112
TAIR|locus:2063830348 AT2G03410 [Arabidopsis thalian 0.841 0.764 0.655 3e-92
UNIPROTKB|Q29RI6341 CAB39 "Calcium-binding protein 0.889 0.824 0.418 4e-58
UNIPROTKB|E2R8W7341 CAB39 "Uncharacterized protein 0.889 0.824 0.418 4e-58
UNIPROTKB|Q9Y376341 CAB39 "Calcium-binding protein 0.889 0.824 0.418 4e-58
RGD|1306390341 Cab39 "calcium binding protein 0.889 0.824 0.418 4e-58
MGI|MGI:107438341 Cab39 "calcium binding protein 0.889 0.824 0.418 5.1e-58
ZFIN|ZDB-GENE-041114-204334 cab39l "calcium binding protei 0.879 0.832 0.435 5.1e-58
ZFIN|ZDB-GENE-040625-158341 cab39 "calcium binding protein 0.863 0.800 0.426 2.2e-57
TAIR|locus:2168958 AT5G47540 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1173 (418.0 bits), Expect = 3.7e-119, P = 3.7e-119
 Identities = 226/269 (84%), Positives = 255/269 (94%)

Query:     1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSA---DVRESKREDKMAELCKNIRELKSILYG 57
             MKGLFKSKPRTP D+VRQTRDL+++++RS    D+R+SKR++KMAEL +NIR++KSILYG
Sbjct:     1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query:    58 NSESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIA 117
             NSE+EPV+EACAQLT EFF+E+TLRLLITCLPKLNLE RKDATQVVANLQRQQV+S+LIA
Sbjct:    61 NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query:   118 SDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLP 177
             SDYLEANIDL+D+LI G+ENTDMALHYGAM RECIRHQ VA+YVLES H+KKFFDYIQLP
Sbjct:   121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query:   178 NFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGD 237
             NFDIAADAAATFKELLTRHKSTVAEFL+KN DWFFA+YNSKLLESSNYITRRQA+KLLGD
Sbjct:   181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query:   238 ILLDRSNSVVMTRYVSSRENLRILMNLLR 266
             ILLDRSNS VMT+YVSSR+NLRILMNLLR
Sbjct:   241 ILLDRSNSAVMTKYVSSRDNLRILMNLLR 269
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2130774 AT4G17270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2063830 AT2G03410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8W7 CAB39 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y376 CAB39 "Calcium-binding protein 39" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306390 Cab39 "calcium binding protein 39" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107438 Cab39 "calcium binding protein 39" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040625-158 cab39 "calcium binding protein 39" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FGK3MO25N_ARATHNo assigned EC number0.84010.84170.7755yesno
Q9P7Q8PMO25_SCHPONo assigned EC number0.38160.86390.8297yesno
Q9DB16CB39L_MOUSENo assigned EC number0.41010.88920.8338yesno
Q9H9S4CB39L_HUMANNo assigned EC number0.41690.88920.8338yesno
P91891MO25_DROMENo assigned EC number0.40280.86070.8023yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00012467001
SubName- Full=Chromosome undetermined scaffold_383, whole genome shotgun sequence; (340 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
pfam08569334 pfam08569, Mo25, Mo25-like 1e-106
>gnl|CDD|219909 pfam08569, Mo25, Mo25-like Back     alignment and domain information 
 Score =  311 bits (799), Expect = e-106
 Identities = 126/267 (47%), Positives = 182/267 (68%), Gaps = 5/267 (1%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           M  LFK  P+TP D+VR  +D +    +   +     E    E+ KN+ +LK IL G+++
Sbjct: 1   MPFLFKKSPKTPSDLVRSLKDQL---LKLDSLSSDNAEKAQEEVSKNLSQLKEILVGDTD 57

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLI-ASD 119
           +EP  E  AQL  E + E+ L LLI  L KL+ E RKD   + +N+ R+ + +      D
Sbjct: 58  AEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPTVD 117

Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
           YL A+ ++L +L+ GYE +++AL  G MLRECI+H+++A+ +L S    KFF Y+QL  F
Sbjct: 118 YLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLSTF 177

Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
           +IA DA +TFK+LLT HK  VAEFL  NYD FF+ +N KLL+S+NY+T+RQ++KLLG++L
Sbjct: 178 EIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFN-KLLQSTNYVTKRQSLKLLGELL 236

Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLR 266
           LDR+NS VMT+Y+SS ENL+++MNLLR
Sbjct: 237 LDRANSKVMTKYISSPENLKLMMNLLR 263

Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PF08569335 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro 100.0
KOG1566342 consensus Conserved protein Mo25 [Function unknown 100.0
PF08767319 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 86.77
PF10508 503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 83.01
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis Back     alignment and domain information 
Probab=100.00  E-value=9.7e-113  Score=823.29  Aligned_cols=292  Identities=52%  Similarity=0.828  Sum_probs=258.1

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhch
Q 021148            1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENT   80 (316)
Q Consensus         1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl   80 (316)
                      |+||||++||||+|+||+++|+|.+|+   +..++++++..|||+|+|++||.||+|++|.+|++|+|+||++|+|++|+
T Consensus         1 M~FlF~k~~KtP~ElVr~l~e~L~~L~---~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl   77 (335)
T PF08569_consen    1 MSFLFKKKPKTPAELVRSLREALEKLD---SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL   77 (335)
T ss_dssp             -----------HHHHHHHHHHHHHHHH---SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHhc---cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999998   22556777778999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCc-cchhhhhcC-hhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHH
Q 021148           81 LRLLITCLPKLNLEARKDATQVVANLQRQQVHSKL-IASDYLEAN-IDLLDILIAGYENTDMALHYGAMLRECIRHQSVA  158 (316)
Q Consensus        81 l~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~-p~v~Yl~~~-peil~~Ll~gY~~~dial~~G~mLREcir~e~la  158 (316)
                      +..||.+|+.||||+|||+++||++++|+++|+++ |+|+||++| |||+++|++||++||+|++||.|||||+|||++|
T Consensus        78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~  157 (335)
T PF08569_consen   78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA  157 (335)
T ss_dssp             HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999 999999999 9999999999999999999999999999999999


Q ss_pred             HHHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHH
Q 021148          159 RYVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDI  238 (316)
Q Consensus       159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgel  238 (316)
                      ++||++++||+||+|++.++||||||||+||+|+||+||++||+||.+|||+||++|| +||+|+|||||||||||||||
T Consensus       158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el  236 (335)
T PF08569_consen  158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL  236 (335)
T ss_dssp             HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             hccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCccccccc
Q 021148          239 LLDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDK  296 (316)
Q Consensus       239 LLdr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~  296 (316)
                      |+||+|++||+|||+||+|||+||+||+|+|    ||||||||||||||||||+|..||.+.
T Consensus       237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~N  298 (335)
T PF08569_consen  237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKN  298 (335)
T ss_dssp             HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHT
T ss_pred             HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999    999999999999999999999999875

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
>KOG1566 consensus Conserved protein Mo25 [Function unknown] Back     alignment and domain information
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES) Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3zhp_A340 Human Mst3 (stk24) In Complex With Mo25beta Length 2e-61
3gni_A341 Structure Of Strad And Mo25 Length = 341 6e-57
1upk_A341 Crystal Structure Of Mo25 In Complex With A C-Termi 1e-48
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340 Back     alignment and structure 
Iteration: 1

 Score =  232 bits (591), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/298 (41%), Positives = 188/298 (63%), Gaps = 14/298 (4%)
Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAE-LCKNIRELKSILYGNS 59
           M  LF    + P +IV+  +D     N +   ++ K+ DK +E + K+++ +K IL G +
Sbjct: 6   MLPLFSKSHKNPAEIVKILKD-----NLAILEKQDKKTDKASEEVSKSLQAMKEILCGTN 60
Query: 60  ESEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASD 119
           E EP +EA AQL  E +    L  LI  L  ++ E +KD TQ+  N+ R+Q+ ++    +
Sbjct: 61  EKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGTRSPTVE 120
Query: 120 YLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNF 179
           Y+ A+  +L +L+ GYE   +AL  G MLRECIRH+ +A+ +L S   + FF Y++L  F
Sbjct: 121 YISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKYVELSTF 180
Query: 180 DIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL 239
           DIA+DA ATFK+LLTRHK  VA+FL +NYD  F +Y  KLL+S NY+T+RQ++KLLG+++
Sbjct: 181 DIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLKLLGELI 239
Query: 240 LDRSNSVVMTRYVSSRENLRILMNLLRVR----YFPRMHVEDIFYLAYQKLQGTEPVT 293
           LDR N  +MT+Y+S  ENL+++MNLLR +     F   HV  +F  +  K   T+P+ 
Sbjct: 240 LDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHK---TQPIV 294
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341 Back     alignment and structure
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 1e-117
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341 Back     alignment and structure
 Score =  340 bits (873), Expect = e-117
 Identities = 115/269 (42%), Positives = 176/269 (65%), Gaps = 2/269 (0%)

Query: 1   MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSE 60
           M   F    ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E
Sbjct: 1   MPFPFGKSHKSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNE 59

Query: 61  SEPVSEACAQLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDY 120
            EP +EA AQL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y
Sbjct: 60  KEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEY 119

Query: 121 LEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFD 180
           +    ++L +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FD
Sbjct: 120 ICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFD 179

Query: 181 IAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILL 240
           IA+DA ATFK+LLTRHK   AEFL ++YD FF+EY  KLL S NY+T+RQ++KLLG++LL
Sbjct: 180 IASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLL 238

Query: 241 DRSNSVVMTRYVSSRENLRILMNLLRVRY 269
           DR N  +MT+Y+S  ENL+++MNLLR + 
Sbjct: 239 DRHNFTIMTKYISKPENLKLMMNLLRDKS 267
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
1upk_A341 MO25 protein; transferase, armadillo; HET: MSE; 1. 100.0
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.12
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 95.75
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 95.29
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 94.49
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 94.34
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 93.69
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 93.36
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.07
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 90.84
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 90.09
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 88.76
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 87.92
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 87.8
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 87.41
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 86.41
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 83.51
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 83.1
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 80.74
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Back     alignment and structure
Probab=100.00  E-value=7.2e-117  Score=849.23  Aligned_cols=291  Identities=41%  Similarity=0.716  Sum_probs=267.2

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhcCCCchhhhhHHHH-HHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhc
Q 021148            1 MKGLFKSKPRTPVDIVRQTRDLIIYANRSADVRESKREDKM-AELCKNIRELKSILYGNSESEPVSEACAQLTAEFFREN   79 (316)
Q Consensus         1 M~~lF~~~~ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~-eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d   79 (316)
                      |+  ||++||||+|+||+++|+|.+|+.++  ++.+.++|+ |||+|+|++||.||||++|+||+||+|+|||+|+|++|
T Consensus         3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d   78 (341)
T 1upk_A            3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG   78 (341)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred             CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence            56  99999999999999999999999643  234443454 89999999999999999999999999999999999999


Q ss_pred             hHHHHHhcCCCCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHH
Q 021148           80 TLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVAR  159 (316)
Q Consensus        80 ll~~Li~~L~~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~  159 (316)
                      +|++||.+|+.||||+|||+++||++++||++|+++|+|+||++||||+++|++||++||+|++||+|||||+|||++|+
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~  158 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchhhHhhhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHh
Q 021148          160 YVLESQHMKKFFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDIL  239 (316)
Q Consensus       160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelL  239 (316)
                      +||+|++||+||+|++.|+||||||||+|||||||+||++|||||++|||+||++|| +||+|+||||||||||||||||
T Consensus       159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL  237 (341)
T 1upk_A          159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL  237 (341)
T ss_dssp             HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             ccCCcHHHHHHhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCccccccc
Q 021148          240 LDRSNSVVMTRYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDK  296 (316)
Q Consensus       240 Ldr~N~~vM~rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~  296 (316)
                      |||+|++||++||+|++|||+||+||||+|    ||||||||||||||||||+|..||.+.
T Consensus       238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~N  298 (341)
T 1upk_A          238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN  298 (341)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHT
T ss_pred             hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHH
Confidence            999999999999999999999999999999    999999999999999999999999865
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1upka_330 a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) 1e-129
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  369 bits (949), Expect = e-129
 Identities = 113/257 (43%), Positives = 173/257 (67%), Gaps = 2/257 (0%)

Query: 10  RTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACA 69
           ++P DIV+  ++ +    +  D+ + K E    E+ KN+  +K ILYG +E EP +EA A
Sbjct: 1   KSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59

Query: 70  QLTAEFFRENTLRLLITCLPKLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLD 129
           QL  E +    L  L+  L  ++ E +KD  Q+  N+ R+Q+ ++    +Y+    ++L 
Sbjct: 60  QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119

Query: 130 ILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKKFFDYIQLPNFDIAADAAATF 189
           +L+ GYE+ ++AL+ G MLRECIRH+ +A+ +L S+    FF Y+++  FDIA+DA ATF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179

Query: 190 KELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT 249
           K+LLTRHK   AEFL ++YD FF+EY  KLL S NY+T+RQ++KLLG++LLDR N  +MT
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 238

Query: 250 RYVSSRENLRILMNLLR 266
           +Y+S  ENL+++MNLLR
Sbjct: 239 KYISKPENLKLMMNLLR 255

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1upka_330 Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 95.53
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 94.5
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.76
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.26
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 93.05
d1wa5b_ 503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 93.03
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 82.8
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 80.76
>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-115  Score=832.38  Aligned_cols=286  Identities=41%  Similarity=0.713  Sum_probs=271.2

Q ss_pred             CChHHHHHHHHHHHHHhhcCCCchhhhhHHHHHHHHHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHhhchHHHHHhcCC
Q 021148           10 RTPVDIVRQTRDLIIYANRSADVRESKREDKMAELCKNIRELKSILYGNSESEPVSEACAQLTAEFFRENTLRLLITCLP   89 (316)
Q Consensus        10 ktP~elVr~l~e~l~~L~~~~~~~~~K~~~k~eeisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~L~   89 (316)
                      |||+|+||+++|+|.+|+.++. +++|+++++|||+|+|++||.||||++|+||+||+|+||++|+|++|+|++||.+||
T Consensus         1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~   79 (330)
T d1upka_           1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ   79 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence            7999999999999999997643 577887778999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhhhhHHHHHHHHhhhccCCCccchhhhhcChhHHHHHHHhcCCchhhHhHHHHHHHHHHHHHHHHHHhcchhhHh
Q 021148           90 KLNLEARKDATQVVANLQRQQVHSKLIASDYLEANIDLLDILIAGYENTDMALHYGAMLRECIRHQSVARYVLESQHMKK  169 (316)
Q Consensus        90 ~L~fE~RKdv~~If~~llr~~~~~r~p~v~Yl~~~peil~~Ll~gY~~~dial~~G~mLREcir~e~la~~iL~~~~f~~  169 (316)
                      +||||+|||+++||++++||++|+|+|+|+||++||||+++|++||++||+|++||.|||||||||++|++||+|++||+
T Consensus        80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~  159 (330)
T d1upka_          80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD  159 (330)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred             CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCchhhhhHHHHHHHHHhhChHHHHHHHHhcHHHHHHHhhhhhccCCCceehhchhhHHHHHhccCCcHHHHH
Q 021148          170 FFDYIQLPNFDIAADAAATFKELLTRHKSTVAEFLSKNYDWFFAEYNSKLLESSNYITRRQAVKLLGDILLDRSNSVVMT  249 (316)
Q Consensus       170 fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefl~~Nyd~Ff~~yn~~LL~S~NYVTkRQSLKLLgelLLdr~N~~vM~  249 (316)
                      ||+|+++|+||||||||+||||+||+||++|||||++|||+||++|| +||+|+||||||||||||||+|+||+|++||+
T Consensus       160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~-~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~  238 (330)
T d1upka_         160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  238 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999998 99999999999999999999999999999999


Q ss_pred             HhhcChhhHHHHHHHhccCC----CCcceeeeeeeeccCCCCCCcccccccc
Q 021148          250 RYVSSRENLRILMNLLRVRY----FPRMHVEDIFYLAYQKLQGTEPVTFDKI  297 (316)
Q Consensus       250 rYIs~~eNLKl~M~LL~d~s----~EAFHVFKvFVANP~K~~~~~~~~~~~~  297 (316)
                      |||+|++|||+||+||||+|    +||||||||||||||||++|..||.+.-
T Consensus       239 ~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr  290 (330)
T d1upka_         239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ  290 (330)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH
T ss_pred             HHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhH
Confidence            99999999999999999999    9999999999999999999999998753
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure