Citrus Sinensis ID: 021163

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MAISTSTVSSSNLLSFSSTLGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSSSDMGSAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEccccccccccccHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHHccccEEEEEcccccHHHHHHcccccEEEEccccccccccccc
ccEEcccccccccccccccccccccccccccHHccccccccccEEEEEccccccccccccccccccccccccccccEccccccccccccEEEEEEEEcHHHHccccccccccEEEEEEcccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEHEHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHcccHEEEEEccccccEcccccccccccEHccccHHHHHHcccccHcHHHHHHHHHccccEEEEEccccccHHHHHcccccEEEEccccccEEEcccc
maiststvsssnllsfsstlgssrihrsslmsfhnhqqtsngrlvvnccsssdmgsaqnptngrqpqmssmspfgvtlndngmskpsyKWQRVLLKVSgealagdhtqnidpkvaIVVGGgnifrgasaagnsgldrssaDYIGMLATVMNAIFLQAtmesigiptRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFaagtgnpffttDTAAALRCAEINAEVVLKAtnvdgvyddnprrnpnarllDTLTYQevtskdlsvMDMTAITlcqennipvvvfnlnqpgniakaiqgervgtliggtwnstvsktlg
maiststvsssnllSFSSTLGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSSSDMGSAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEAlagdhtqnidpKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIfaagtgnpfFTTDTAAALRCAEINAEVVlkatnvdgvyddnprrnpnarlldtlTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAiqgervgtliggtwnstvsktlg
MAIststvsssnllsfsstlgssRIHRSSLMSFHNHQQTSNGRLVVNCCSSSDMGSAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
********************************************VVNC***************************************YKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN****PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN********
*******************************************************************************************RVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN********
**************SFSSTLGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSS******************SMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
*********SS**LSFSSTLGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSS********************************SKPSYKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAISTSTVSSSNLLSFSSTLGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSSSDMGSAQNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKTLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
P74457260 Uridylate kinase OS=Synec N/A no 0.693 0.842 0.629 5e-82
Q10Y48244 Uridylate kinase OS=Trich yes no 0.693 0.897 0.605 2e-81
Q2JS42254 Uridylate kinase OS=Synec yes no 0.689 0.858 0.610 6e-81
Q2JJE2253 Uridylate kinase OS=Synec yes no 0.683 0.853 0.611 5e-80
Q8YXK5242 Uridylate kinase OS=Nosto yes no 0.683 0.892 0.612 6e-79
Q3MFI4242 Uridylate kinase OS=Anaba yes no 0.683 0.892 0.612 6e-79
Q7V6C2237 Uridylate kinase OS=Proch yes no 0.674 0.898 0.612 7e-79
Q3AV98237 Uridylate kinase OS=Synec yes no 0.680 0.907 0.615 1e-78
A2C7Q3237 Uridylate kinase OS=Proch yes no 0.674 0.898 0.607 2e-78
Q2IMM2251 Uridylate kinase OS=Anaer yes no 0.696 0.876 0.581 4e-78
>sp|P74457|PYRH_SYNY3 Uridylate kinase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=pyrH PE=3 SV=1 Back     alignment and function desciption
 Score =  304 bits (779), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 153/243 (62%), Positives = 180/243 (74%), Gaps = 24/243 (9%)

Query: 80  DNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKV------------------AIVVGGG 121
           D GMS     +QRVLLK+SGEAL GD    IDP V                  AIVVGGG
Sbjct: 18  DGGMS-----YQRVLLKLSGEALMGDLGYGIDPAVVGTIAQEIKDVLQAGVQLAIVVGGG 72

Query: 122 NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 181
           NIFRG  A+  +G+DR++ADYIGM+ATVMNA+ LQ  +E + IPTRV TA  M EVAEPY
Sbjct: 73  NIFRGVKASA-AGMDRATADYIGMIATVMNAMTLQDALEQMDIPTRVLTAIAMQEVAEPY 131

Query: 182 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 241
           IRRRA+RHLEKGRVVIF AG+GNPFFTTDT AALR AEI+AEVV KAT VDGVYD +P+ 
Sbjct: 132 IRRRAIRHLEKGRVVIFGAGSGNPFFTTDTTAALRAAEIDAEVVFKATKVDGVYDSDPKT 191

Query: 242 NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 301
           NPNAR   TLTY  V ++DL VMD TAI LC++NNIP+++F+L  PGNI +AI+GE VGT
Sbjct: 192 NPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPIMIFDLGVPGNIVRAIKGEAVGT 251

Query: 302 LIG 304
           L+G
Sbjct: 252 LVG 254
Catalyzes the reversible phosphorylation of UMP to UDP.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 2EC: 2
>sp|Q10Y48|PYRH_TRIEI Uridylate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q2JS42|PYRH_SYNJA Uridylate kinase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q2JJE2|PYRH_SYNJB Uridylate kinase OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q8YXK5|PYRH_NOSS1 Uridylate kinase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q3MFI4|PYRH_ANAVT Uridylate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q7V6C2|PYRH_PROMM Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q3AV98|PYRH_SYNS9 Uridylate kinase OS=Synechococcus sp. (strain CC9902) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|A2C7Q3|PYRH_PROM3 Uridylate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=pyrH PE=3 SV=1 Back     alignment and function description
>sp|Q2IMM2|PYRH_ANADE Uridylate kinase OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=pyrH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
255552374328 Uridylate kinase, putative [Ricinus comm 0.971 0.935 0.743 1e-134
225431539332 PREDICTED: uridylate kinase-like [Vitis 0.879 0.837 0.781 1e-130
356512819331 PREDICTED: uridylate kinase-like [Glycin 0.895 0.854 0.729 1e-127
356525588325 PREDICTED: uridylate kinase-like [Glycin 0.822 0.8 0.789 1e-125
449461831341 PREDICTED: uridylate kinase-like [Cucumi 0.895 0.829 0.752 1e-125
217074196324 unknown [Medicago truncatula] 0.825 0.805 0.784 1e-123
255637835325 unknown [Glycine max] 0.822 0.8 0.775 1e-123
357519905321 Uridylate kinase [Medicago truncatula] g 0.825 0.813 0.775 1e-120
388496114324 unknown [Medicago truncatula] 0.825 0.805 0.770 1e-119
15230160339 uridylate kinase [Arabidopsis thaliana] 0.740 0.690 0.841 1e-119
>gi|255552374|ref|XP_002517231.1| Uridylate kinase, putative [Ricinus communis] gi|223543602|gb|EEF45131.1| Uridylate kinase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  485 bits (1248), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 249/335 (74%), Positives = 274/335 (81%), Gaps = 28/335 (8%)

Query: 1   MAISTSTVSSSNLLSFSST---LGSSRIHRSSLMSFHNHQQTSNGRLVVNCCSSSDMGSA 57
           MAISTS    + L   S +   LG  +IH    M  H+   T NGRL+++CCS  DMG+ 
Sbjct: 1   MAISTSFAPINTLNPVSPSYYSLGPFKIHHPRFMRAHS---TPNGRLLIHCCS--DMGAT 55

Query: 58  QNPTNGRQPQMSSMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPK---- 113
             P + RQ QM+SM+ FG  +N+  +S+PSYKWQRVLLKVSGEALAGD TQNIDPK    
Sbjct: 56  SEPMSIRQAQMTSMAAFG--MNETSLSRPSYKWQRVLLKVSGEALAGDRTQNIDPKITMA 113

Query: 114 --------------VAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATM 159
                         VAIVVGGGNIFRG+S AG+SGLDRSSADYIGMLATVMNAIFLQATM
Sbjct: 114 IAREVASVTRLGVEVAIVVGGGNIFRGSSWAGSSGLDRSSADYIGMLATVMNAIFLQATM 173

Query: 160 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 219
           ESIGIPTRVQTAFRMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE
Sbjct: 174 ESIGIPTRVQTAFRMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 233

Query: 220 INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPV 279
           INAEVVLKATNVDGVYDD+PR NPNARLLDTLT+ EVTSKDLSVMDMTAITLCQENNIPV
Sbjct: 234 INAEVVLKATNVDGVYDDDPRHNPNARLLDTLTFHEVTSKDLSVMDMTAITLCQENNIPV 293

Query: 280 VVFNLNQPGNIAKAIQGERVGTLIGGTWNSTVSKT 314
           VVFNL++PGNI+KAI GERVGTLIGGT NSTV++T
Sbjct: 294 VVFNLSEPGNISKAILGERVGTLIGGTRNSTVART 328

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225431539|ref|XP_002281894.1| PREDICTED: uridylate kinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512819|ref|XP_003525113.1| PREDICTED: uridylate kinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356525588|ref|XP_003531406.1| PREDICTED: uridylate kinase-like [Glycine max] Back     alignment and taxonomy information
>gi|449461831|ref|XP_004148645.1| PREDICTED: uridylate kinase-like [Cucumis sativus] gi|449507502|ref|XP_004163050.1| PREDICTED: uridylate kinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|217074196|gb|ACJ85458.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255637835|gb|ACU19237.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357519905|ref|XP_003630241.1| Uridylate kinase [Medicago truncatula] gi|355524263|gb|AET04717.1| Uridylate kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|388496114|gb|AFK36123.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|15230160|ref|NP_188498.1| uridylate kinase [Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1| unnamed protein product [Arabidopsis thaliana] gi|15292789|gb|AAK92763.1| putative uridylate kinase [Arabidopsis thaliana] gi|20258857|gb|AAM14100.1| putative uridylate kinase [Arabidopsis thaliana] gi|332642610|gb|AEE76131.1| uridylate kinase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2093949339 AT3G18680 [Arabidopsis thalian 0.639 0.595 0.920 1e-111
TIGR_CMR|CHY_1785242 CHY_1785 "uridylate kinase" [C 0.607 0.793 0.637 6e-72
TIGR_CMR|GSU_1919239 GSU_1919 "uridylate kinase" [G 0.607 0.803 0.585 1.1e-66
TIGR_CMR|BA_3963240 BA_3963 "uridylate kinase" [Ba 0.617 0.812 0.588 8.7e-65
TIGR_CMR|DET_0375241 DET_0375 "uridylate kinase" [D 0.601 0.788 0.588 5.4e-59
TIGR_CMR|CBU_1384243 CBU_1384 "uridylate kinase" [C 0.642 0.835 0.509 6.1e-58
TIGR_CMR|ECH_0266244 ECH_0266 "uridylate kinase" [E 0.658 0.852 0.507 5.4e-57
TIGR_CMR|SPO_1662251 SPO_1662 "uridylate kinase" [R 0.607 0.764 0.546 1.8e-56
TIGR_CMR|CJE_1410239 CJE_1410 "uridylate kinase" [C 0.585 0.774 0.551 1.1e-54
TAIR|locus:2100108542 AT3G10030 [Arabidopsis thalian 0.598 0.348 0.505 2.9e-54
TAIR|locus:2093949 AT3G18680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 947 (338.4 bits), Expect = 1.0e-111, Sum P(2) = 1.0e-111
 Identities = 186/202 (92%), Positives = 198/202 (98%)

Query:   113 KVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 172
             +VAIVVGGGNIFRG++ AG SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF
Sbjct:   137 EVAIVVGGGNIFRGSTWAGCSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 196

Query:   173 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 232
             RMSEVAEPYIRRRA+RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD
Sbjct:   197 RMSEVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 256

Query:   233 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 292
             GV+DD+P+RNPNARLLD+LTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL++PGNIAK
Sbjct:   257 GVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSEPGNIAK 316

Query:   293 AIQGERVGTLIGGTWNSTVSKT 314
             AI+GERVGTLIGGTWNS V+ T
Sbjct:   317 AIKGERVGTLIGGTWNSIVTTT 338
GO:0006221 "pyrimidine nucleotide biosynthetic process" evidence=IEA;ISS
GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA
GO:0009041 "uridylate kinase activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0033862 "UMP kinase activity" evidence=IEA
GO:0006364 "rRNA processing" evidence=RCA
GO:0006399 "tRNA metabolic process" evidence=RCA
GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA
GO:0009658 "chloroplast organization" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0016226 "iron-sulfur cluster assembly" evidence=RCA
GO:0045036 "protein targeting to chloroplast" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048481 "ovule development" evidence=RCA
TIGR_CMR|CHY_1785 CHY_1785 "uridylate kinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1919 GSU_1919 "uridylate kinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3963 BA_3963 "uridylate kinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0375 DET_0375 "uridylate kinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1384 CBU_1384 "uridylate kinase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0266 ECH_0266 "uridylate kinase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1662 SPO_1662 "uridylate kinase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1410 CJE_1410 "uridylate kinase" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2BVI4PYRH_PROM52, ., 7, ., 4, ., 2, 20.58180.67400.9102yesno
Q0BTM0PYRH_GRABC2, ., 7, ., 4, ., 2, 20.56890.66770.8577yesno
Q8DM63PYRH_THEEB2, ., 7, ., 4, ., 2, 20.59660.69300.9049yesno
Q3ALP7PYRH_SYNSC2, ., 7, ., 4, ., 2, 20.59220.67720.9029yesno
Q7U5F5PYRH_SYNPX2, ., 7, ., 4, ., 2, 20.60080.67720.9029yesno
Q0AYK2PYRH_SYNWW2, ., 7, ., 4, ., 2, 20.56660.69300.9201yesno
Q3A397PYRH_PELCD2, ., 7, ., 4, ., 2, 20.56250.69300.9087yesno
Q7VD61PYRH_PROMA2, ., 7, ., 4, ., 2, 20.58180.67400.8987yesno
Q39W86PYRH_GEOMG2, ., 7, ., 4, ., 2, 20.56010.69620.9205yesno
Q5N3B6PYRH_SYNP62, ., 7, ., 4, ., 2, 20.60850.68350.9yesno
Q2JJE2PYRH_SYNJB2, ., 7, ., 4, ., 2, 20.61110.68350.8537yesno
Q3B5T8PYRH_PELLD2, ., 7, ., 4, ., 2, 20.53210.67720.9106yesno
Q0I8L5PYRH_SYNS32, ., 7, ., 4, ., 2, 20.61200.67400.9063yesno
Q8YXK5PYRH_NOSS12, ., 7, ., 4, ., 2, 20.61270.68350.8925yesno
Q3AB79PYRH_CARHZ2, ., 7, ., 4, ., 2, 20.58570.69300.9049yesno
P59003PYRH_CHLTE2, ., 7, ., 4, ., 2, 20.54930.67720.8953yesno
Q7V2F8PYRH_PROMP2, ., 7, ., 4, ., 2, 20.58620.67400.9102yesno
A5GSA3PYRH_SYNR32, ., 7, ., 4, ., 2, 20.60340.67400.8987yesno
A3DE57PYRH_CLOTH2, ., 7, ., 4, ., 2, 20.56900.68350.9191yesno
Q3AV98PYRH_SYNS92, ., 7, ., 4, ., 2, 20.61530.68030.9071yesno
Q1WUG5PYRH_LACS12, ., 7, ., 4, ., 2, 20.54660.68350.9yesno
Q2JS42PYRH_SYNJA2, ., 7, ., 4, ., 2, 20.61010.68980.8582yesno
A3PBP6PYRH_PROM02, ., 7, ., 4, ., 2, 20.57320.67400.9102yesno
Q7V6C2PYRH_PROMM2, ., 7, ., 4, ., 2, 20.61200.67400.8987yesno
A2BQ03PYRH_PROMS2, ., 7, ., 4, ., 2, 20.57750.67400.9102yesno
A2C7Q3PYRH_PROM32, ., 7, ., 4, ., 2, 20.60770.67400.8987yesno
Q6MGY5PYRH_BDEBA2, ., 7, ., 4, ., 2, 20.53550.68980.9198yesno
A8G3N7PYRH_PROM22, ., 7, ., 4, ., 2, 20.58180.67400.9102yesno
A4J5Z1PYRH_DESRM2, ., 7, ., 4, ., 2, 20.56300.69300.9049yesno
A0LJ65PYRH_SYNFM2, ., 7, ., 4, ., 2, 20.55640.68980.8897yesno
A7H724PYRH_ANADF2, ., 7, ., 4, ., 2, 20.57560.68670.8714yesno
Q3MFI4PYRH_ANAVT2, ., 7, ., 4, ., 2, 20.61270.68350.8925yesno
A5GJF0PYRH_SYNPW2, ., 7, ., 4, ., 2, 20.60770.67400.9063yesno
Q74BW2PYRH_GEOSL2, ., 7, ., 4, ., 2, 20.54770.69620.9205yesno
Q5FPZ5PYRH_GLUOX2, ., 7, ., 4, ., 2, 20.55320.70560.9065yesno
Q46GQ4PYRH_PROMT2, ., 7, ., 4, ., 2, 20.59050.67400.8987yesno
Q8EQV1PYRH_OCEIH2, ., 7, ., 4, ., 2, 20.55500.68350.9yesno
A1BHZ3PYRH_CHLPD2, ., 7, ., 4, ., 2, 20.54070.67720.9067yesno
Q2IMM2PYRH_ANADE2, ., 7, ., 4, ., 2, 20.58150.69620.8764yesno
Q31QY1PYRH_SYNE72, ., 7, ., 4, ., 2, 20.60850.68350.9yesno
A4XM00PYRH_CALS82, ., 7, ., 4, ., 2, 20.56900.68030.8995yesno
Q74IR8PYRH_LACJO2, ., 7, ., 4, ., 2, 20.55080.68350.8962yesno
O66929PYRH_AQUAE2, ., 7, ., 4, ., 2, 20.54770.69300.9125yesno
Q10Y48PYRH_TRIEI2, ., 7, ., 4, ., 2, 20.60500.69300.8975yesno
Q1D1I1PYRH_MYXXD2, ., 7, ., 4, ., 2, 20.54540.70250.888yesno
Q31C12PYRH_PROM92, ., 7, ., 4, ., 2, 20.57750.67400.9102yesno
Q7NI44PYRH_GLOVI2, ., 7, ., 4, ., 2, 20.56830.67720.9106yesno
A2C0Y1PYRH_PROM12, ., 7, ., 4, ., 2, 20.59050.67400.8987yesno
Q24UF9PYRH_DESHY2, ., 7, ., 4, ., 2, 20.56660.69300.9125yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.40.921
4th Layer2.7.4.220.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT3G18680
aspartate/glutamate/uridylate kinase family protein; aspartate/glutamate/uridylate kinase family protein; FUNCTIONS IN- uridylate kinase activity, UMP kinase activity; INVOLVED IN- amino acid biosynthetic process, 'de novo' pyrimidine base biosynthetic process, pyrimidine nucleotide biosynthetic process; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Aspartate/glutamate/uridylate kinase (InterPro-IPR001048), Uridylate kinase, bacteria (InterPro-IPR015963); BEST Arabidopsis thaliana protein match is- aspartate/ [...] (339 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT3G53900
uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putativ [...] (296 aa)
   • •• 0.996
RRF
RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR); RIBOSOME RECYCLING FACTOR, CHLOROPLAST [...] (275 aa)
•  •  • 0.993
NDPK2
NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2); ATP binding / nucleoside diphosphate kinase/ protein b [...] (231 aa)
   • •• 0.988
AT3G54470
uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS); encodes the bi-functional oro [...] (476 aa)
   • •• 0.985
RIF10
RIF10 (resistant to inhibition with FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid [...] (922 aa)
•  • •• 0.981
NDPK1
NDPK1; ATP binding / nucleoside diphosphate kinase; nucleoside diphosphate kinase type 1 (NDPK1 [...] (169 aa)
   • •• 0.979
AT4G11120
translation elongation factor Ts (EF-Ts), putative; translation elongation factor Ts (EF-Ts), p [...] (395 aa)
•  •• • 0.974
AT3G13120
30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)
•  •• • 0.962
NDPK3
NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase; nucleosid [...] (238 aa)
     •• 0.960
AT1G17410
nucleoside diphosphate kinase family protein; nucleoside diphosphate kinase family protein; FUN [...] (181 aa)
     •• 0.960

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
cd04254231 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t 1e-140
PRK00358231 PRK00358, pyrH, uridylate kinase; Provisional 1e-135
cd04239229 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase 1e-122
COG0528238 COG0528, PyrH, Uridylate kinase [Nucleotide transp 1e-116
TIGR02075232 TIGR02075, pyrH_bact, uridylate kinase 1e-114
PRK14558231 PRK14558, pyrH, uridylate kinase; Provisional 4e-72
PRK14557247 PRK14557, pyrH, uridylate kinase; Provisional 6e-61
PRK14556249 PRK14556, pyrH, uridylate kinase; Provisional 2e-51
cd04253221 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k 2e-36
TIGR02076221 TIGR02076, pyrH_arch, uridylate kinase, putative 8e-34
cd02115248 cd02115, AAK, Amino Acid Kinases (AAK) superfamily 3e-27
pfam00696230 pfam00696, AA_kinase, Amino acid kinase family 1e-26
COG0527 447 COG0527, LysC, Aspartokinases [Amino acid transpor 2e-13
cd04242251 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k 1e-12
cd04255262 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i 2e-12
cd04234227 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa 3e-12
TIGR00657 441 TIGR00657, asp_kinases, aspartate kinase 3e-12
COG1608252 COG1608, COG1608, Predicted archaeal kinase [Gener 7e-12
COG0263369 COG0263, ProB, Glutamate 5-kinase [Amino acid tran 2e-10
cd04241252 cd04241, AAK_FomA-like, AAK_FomA-like: This CD inc 3e-10
cd04246239 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino 1e-09
TIGR01027363 TIGR01027, proB, glutamate 5-kinase 2e-09
cd04260244 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A 2e-09
PRK05429372 PRK05429, PRK05429, gamma-glutamyl kinase; Provisi 3e-09
PRK08210 403 PRK08210, PRK08210, aspartate kinase I; Reviewed 4e-09
PRK06291 465 PRK06291, PRK06291, aspartate kinase; Provisional 2e-08
cd04256284 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate 2e-08
cd04244298 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino 3e-08
cd04259295 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki 4e-08
cd04261239 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino 4e-08
PRK09436 819 PRK09436, thrA, bifunctional aspartokinase I/homos 6e-08
cd04243293 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino 1e-07
cd04257294 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina 1e-07
PRK08961 861 PRK08961, PRK08961, bifunctional aspartate kinase/ 2e-07
PRK12314266 PRK12314, PRK12314, gamma-glutamyl kinase; Provisi 4e-07
COG2054212 COG2054, COG2054, Uncharacterized archaeal kinase 1e-06
TIGR01092 715 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate s 3e-06
PLN02418 718 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylat 4e-06
TIGR00656 401 TIGR00656, asp_kin_monofn, aspartate kinase, monof 5e-06
PRK07431 587 PRK07431, PRK07431, aspartate kinase; Provisional 2e-05
PRK06635 404 PRK06635, PRK06635, aspartate kinase; Reviewed 4e-05
PRK08373341 PRK08373, PRK08373, aspartate kinase; Validated 5e-05
PRK13402368 PRK13402, PRK13402, gamma-glutamyl kinase; Provisi 5e-05
cd04240203 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amin 1e-04
PRK08841 392 PRK08841, PRK08841, aspartate kinase; Validated 1e-04
cd04245288 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami 2e-04
cd04249252 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glut 6e-04
TIGR02078327 TIGR02078, AspKin_pair, Pyrococcus aspartate kinas 0.002
PRK12354307 PRK12354, PRK12354, carbamate kinase; Reviewed 0.002
cd04258292 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami 0.003
>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) Back     alignment and domain information 
 Score =  394 bits (1015), Expect = e-140
 Identities = 151/232 (65%), Positives = 182/232 (78%), Gaps = 19/232 (8%)

Query: 91  QRVLLKVSGEALAGDHTQNIDP------------------KVAIVVGGGNIFRGASAAGN 132
           +RVLLK+SGEALAG++   IDP                  +VAIVVGGGNIFRGASAA  
Sbjct: 1   KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEA 60

Query: 133 SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEK 192
            G+DR++ADY+GMLATV+NA+ LQ  +ES+G+ TRV +A  M  VAEPYIRRRA+RHLEK
Sbjct: 61  -GMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEK 119

Query: 193 GRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 252
           GRVVIFA GTGNPFFTTDTAAALR  EINA+V+LKAT VDGVYD +P++NPNA+  D LT
Sbjct: 120 GRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLT 179

Query: 253 YQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 304
           Y EV SK L VMD TA TLC++NN+P+VVFN+N+PGN+ KA++GE VGTLI 
Sbjct: 180 YDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231
>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis Back     alignment and domain information
>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase Back     alignment and domain information
>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional Back     alignment and domain information
>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) Back     alignment and domain information
>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative Back     alignment and domain information
>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) Back     alignment and domain information
>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family Back     alignment and domain information
>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis Back     alignment and domain information
>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis Back     alignment and domain information
>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) Back     alignment and domain information
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase Back     alignment and domain information
>gnl|CDD|224524 COG1608, COG1608, Predicted archaeal kinase [General function prediction only] Back     alignment and domain information
>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|239774 cd04241, AAK_FomA-like, AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms Back     alignment and domain information
>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes Back     alignment and domain information
>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase Back     alignment and domain information
>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species Back     alignment and domain information
>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional Back     alignment and domain information
>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed Back     alignment and domain information
>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional Back     alignment and domain information
>gnl|CDD|239789 cd04256, AAK_P5CS_ProBA, AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis Back     alignment and domain information
>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants Back     alignment and domain information
>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria Back     alignment and domain information
>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences Back     alignment and domain information
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) Back     alignment and domain information
>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional Back     alignment and domain information
>gnl|CDD|224965 COG2054, COG2054, Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] Back     alignment and domain information
>gnl|CDD|130164 TIGR01092, P5CS, delta l-pyrroline-5-carboxylate synthetase Back     alignment and domain information
>gnl|CDD|215230 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase Back     alignment and domain information
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class Back     alignment and domain information
>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed Back     alignment and domain information
>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated Back     alignment and domain information
>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional Back     alignment and domain information
>gnl|CDD|239773 cd04240, AAK_UC, AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria Back     alignment and domain information
>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated Back     alignment and domain information
>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species Back     alignment and domain information
>gnl|CDD|239782 cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis Back     alignment and domain information
>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative Back     alignment and domain information
>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed Back     alignment and domain information
>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PRK14558231 pyrH uridylate kinase; Provisional 100.0
PRK14556249 pyrH uridylate kinase; Provisional 100.0
COG0528238 PyrH Uridylate kinase [Nucleotide transport and me 100.0
PRK00358231 pyrH uridylate kinase; Provisional 100.0
cd04239229 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik 100.0
TIGR02075233 pyrH_bact uridylate kinase. This protein, also cal 100.0
cd04254231 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi 100.0
PRK14557247 pyrH uridylate kinase; Provisional 100.0
COG0263369 ProB Glutamate 5-kinase [Amino acid transport and 100.0
PTZ00489264 glutamate 5-kinase; Provisional 100.0
PRK12314266 gamma-glutamyl kinase; Provisional 100.0
PRK13402368 gamma-glutamyl kinase; Provisional 100.0
cd04256284 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase 100.0
cd04253221 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP 100.0
TIGR02076221 pyrH_arch uridylate kinase, putative. This family 100.0
PRK05429372 gamma-glutamyl kinase; Provisional 100.0
cd04242251 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K 100.0
cd02115248 AAK Amino Acid Kinases (AAK) superfamily, catalyti 100.0
TIGR01027363 proB glutamate 5-kinase. Bacterial ProB proteins h 99.98
cd04255262 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th 99.98
COG1608252 Predicted archaeal kinase [General function predic 99.98
cd04241252 AAK_FomA-like AAK_FomA-like: This CD includes a fo 99.97
cd04246239 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina 99.97
cd04261239 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina 99.97
COG0527 447 LysC Aspartokinases [Amino acid transport and meta 99.97
cd04234227 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) 99.97
PRK08841 392 aspartate kinase; Validated 99.97
TIGR00656 401 asp_kin_monofn aspartate kinase, monofunctional cl 99.97
cd04244298 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina 99.97
PRK14058268 acetylglutamate/acetylaminoadipate kinase; Provisi 99.96
cd04260244 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase 99.96
PRK08210 403 aspartate kinase I; Reviewed 99.96
cd04245288 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki 99.96
PRK06635 404 aspartate kinase; Reviewed 99.96
PLN02512309 acetylglutamate kinase 99.96
CHL00202284 argB acetylglutamate kinase; Provisional 99.96
PRK07431 587 aspartate kinase; Provisional 99.96
KOG1154285 consensus Gamma-glutamyl kinase [Amino acid transp 99.96
TIGR01092 715 P5CS delta l-pyrroline-5-carboxylate synthetase. T 99.96
cd04259295 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super 99.96
cd04258292 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki 99.96
cd04240203 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin 99.96
PRK00942283 acetylglutamate kinase; Provisional 99.96
cd04257294 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa 99.95
PRK08373341 aspartate kinase; Validated 99.95
cd04250279 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase 99.95
cd04243293 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina 99.95
TIGR00657 441 asp_kinases aspartate kinase. The Lys-sensitive en 99.95
cd04251257 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina 99.95
PRK06291 465 aspartate kinase; Provisional 99.95
COG0548265 ArgB Acetylglutamate kinase [Amino acid transport 99.95
PLN02551 521 aspartokinase 99.95
PRK09034 454 aspartate kinase; Reviewed 99.95
PLN02418 718 delta-1-pyrroline-5-carboxylate synthase 99.95
PRK09084 448 aspartate kinase III; Validated 99.95
cd04238256 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate 99.95
TIGR02078327 AspKin_pair Pyrococcus aspartate kinase subunit, p 99.94
PRK05925 440 aspartate kinase; Provisional 99.94
cd04249252 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina 99.94
cd04247306 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa 99.94
PRK09466 810 metL bifunctional aspartate kinase II/homoserine d 99.93
PRK12353314 putative amino acid kinase; Reviewed 99.93
PF00696242 AA_kinase: Amino acid kinase family Match to Gluta 99.93
cd04235308 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot 99.92
PRK09436 819 thrA bifunctional aspartokinase I/homoserine dehyd 99.92
TIGR00746310 arcC carbamate kinase. The seed alignment for this 99.91
PRK09181 475 aspartate kinase; Validated 99.91
PRK08961 861 bifunctional aspartate kinase/diaminopimelate deca 99.91
TIGR01890 429 N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi 99.91
cd04248304 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S 99.91
TIGR00761231 argB acetylglutamate kinase. This model describes 99.91
cd04237280 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) 99.9
PRK05279 441 N-acetylglutamate synthase; Validated 99.89
cd04252248 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam 99.89
PRK12454313 carbamate kinase-like carbamoyl phosphate syntheta 99.88
cd04236271 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA 99.87
PRK12352316 putative carbamate kinase; Reviewed 99.87
PRK12686312 carbamate kinase; Reviewed 99.87
COG2054212 Uncharacterized archaeal kinase related to asparto 99.86
PRK12354307 carbamate kinase; Reviewed 99.83
KOG0456 559 consensus Aspartate kinase [Amino acid transport a 99.81
PRK04531 398 acetylglutamate kinase; Provisional 99.81
PLN02825 515 amino-acid N-acetyltransferase 99.77
PRK09411297 carbamate kinase; Reviewed 99.76
COG0549312 ArcC Carbamate kinase [Amino acid transport and me 99.59
KOG2436 520 consensus Acetylglutamate kinase/acetylglutamate s 97.39
COG1778170 Low specificity phosphatase (HAD superfamily) [Gen 81.7
>PRK14558 pyrH uridylate kinase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.6e-40  Score=300.67  Aligned_cols=212  Identities=45%  Similarity=0.759  Sum_probs=181.7

Q ss_pred             CeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHHHHHH
Q 021163           91 QRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNA  152 (316)
Q Consensus        91 k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~~lna  152 (316)
                      +|+|||+|||++++++...++                  .++|||||||++++|+...   +++....|.++++++++|+
T Consensus         1 ~riviKlGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~~---~~~~~~~d~ig~~~~~ln~   77 (231)
T PRK14558          1 KRVLLKLSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVELK---ELSPTRADQIGMLGTVINA   77 (231)
T ss_pred             CeEEEEeeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhcc---CCChHHHHHHHHHHHHHHH
Confidence            589999999999988543222                  2689999999999887643   4666677889999999999


Q ss_pred             HHHHHHHHhCCCCeEEEecccc-ccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEeccc
Q 021163          153 IFLQATMESIGIPTRVQTAFRM-SEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV  231 (316)
Q Consensus       153 ~Lv~~~L~~~Gi~a~~l~~~~~-~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDV  231 (316)
                      .+++.+|.++|++++.+..+.. .++ .++....+..+++.|.|||++|+.+.+++++|++|+++|.+++|+++++||||
T Consensus        78 ~~~~~~l~~~gi~a~~~~~~~~~~~~-~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV  156 (231)
T PRK14558         78 LYLKDIFEKSGLKAVIVSQIVNLPSV-EPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV  156 (231)
T ss_pred             HHHHHHHHHcCCCeEEeccccccchh-hhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence            8888899999999976543311 111 11222456788999999999999888999999999999999999999999999


Q ss_pred             CcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEecC
Q 021163          232 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT  306 (316)
Q Consensus       232 dGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~~  306 (316)
                      ||||++||+.+|+|++|++|+++|+.++|..++|+.|+++|.++|++++|+|+++|+++.++++|+.+||+|.++
T Consensus       157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  231 (231)
T PRK14558        157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVPD  231 (231)
T ss_pred             CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence            999999999999999999999999988888999999999999999999999999999999999999999999763

>PRK14556 pyrH uridylate kinase; Provisional Back     alignment and domain information
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK00358 pyrH uridylate kinase; Provisional Back     alignment and domain information
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis Back     alignment and domain information
>TIGR02075 pyrH_bact uridylate kinase Back     alignment and domain information
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) Back     alignment and domain information
>PRK14557 pyrH uridylate kinase; Provisional Back     alignment and domain information
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00489 glutamate 5-kinase; Provisional Back     alignment and domain information
>PRK12314 gamma-glutamyl kinase; Provisional Back     alignment and domain information
>PRK13402 gamma-glutamyl kinase; Provisional Back     alignment and domain information
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis Back     alignment and domain information
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) Back     alignment and domain information
>TIGR02076 pyrH_arch uridylate kinase, putative Back     alignment and domain information
>PRK05429 gamma-glutamyl kinase; Provisional Back     alignment and domain information
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis Back     alignment and domain information
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) Back     alignment and domain information
>TIGR01027 proB glutamate 5-kinase Back     alignment and domain information
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis Back     alignment and domain information
>COG1608 Predicted archaeal kinase [General function prediction only] Back     alignment and domain information
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms Back     alignment and domain information
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes Back     alignment and domain information
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences Back     alignment and domain information
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism] Back     alignment and domain information
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) Back     alignment and domain information
>PRK08841 aspartate kinase; Validated Back     alignment and domain information
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class Back     alignment and domain information
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants Back     alignment and domain information
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional Back     alignment and domain information
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species Back     alignment and domain information
>PRK08210 aspartate kinase I; Reviewed Back     alignment and domain information
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species Back     alignment and domain information
>PRK06635 aspartate kinase; Reviewed Back     alignment and domain information
>PLN02512 acetylglutamate kinase Back     alignment and domain information
>CHL00202 argB acetylglutamate kinase; Provisional Back     alignment and domain information
>PRK07431 aspartate kinase; Provisional Back     alignment and domain information
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase Back     alignment and domain information
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria Back     alignment and domain information
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria Back     alignment and domain information
>PRK00942 acetylglutamate kinase; Provisional Back     alignment and domain information
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) Back     alignment and domain information
>PRK08373 aspartate kinase; Validated Back     alignment and domain information
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis Back     alignment and domain information
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) Back     alignment and domain information
>TIGR00657 asp_kinases aspartate kinase Back     alignment and domain information
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) Back     alignment and domain information
>PRK06291 aspartate kinase; Provisional Back     alignment and domain information
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02551 aspartokinase Back     alignment and domain information
>PRK09034 aspartate kinase; Reviewed Back     alignment and domain information
>PLN02418 delta-1-pyrroline-5-carboxylate synthase Back     alignment and domain information
>PRK09084 aspartate kinase III; Validated Back     alignment and domain information
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like Back     alignment and domain information
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative Back     alignment and domain information
>PRK05925 aspartate kinase; Provisional Back     alignment and domain information
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis Back     alignment and domain information
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains Back     alignment and domain information
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional Back     alignment and domain information
>PRK12353 putative amino acid kinase; Reviewed Back     alignment and domain information
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families Back     alignment and domain information
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP Back     alignment and domain information
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional Back     alignment and domain information
>TIGR00746 arcC carbamate kinase Back     alignment and domain information
>PRK09181 aspartate kinase; Validated Back     alignment and domain information
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional Back     alignment and domain information
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase Back     alignment and domain information
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria Back     alignment and domain information
>TIGR00761 argB acetylglutamate kinase Back     alignment and domain information
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts Back     alignment and domain information
>PRK05279 N-acetylglutamate synthase; Validated Back     alignment and domain information
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) Back     alignment and domain information
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed Back     alignment and domain information
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals Back     alignment and domain information
>PRK12352 putative carbamate kinase; Reviewed Back     alignment and domain information
>PRK12686 carbamate kinase; Reviewed Back     alignment and domain information
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] Back     alignment and domain information
>PRK12354 carbamate kinase; Reviewed Back     alignment and domain information
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04531 acetylglutamate kinase; Provisional Back     alignment and domain information
>PLN02825 amino-acid N-acetyltransferase Back     alignment and domain information
>PRK09411 carbamate kinase; Reviewed Back     alignment and domain information
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3ek5_A243 Unique Gtp-Binding Pocket And Allostery Of Ump Kina 7e-66
3nwy_A281 Structure And Allosteric Regulation Of The Uridine 1e-60
1z9d_A252 Crystal Structure Of A Putative Uridylate Kinase (U 4e-57
4a7w_A240 Crystal Structure Of Uridylate Kinase From Helicoba 2e-54
1ybd_A239 Crystal Structure Analysis Of Uridylate Kinase From 3e-54
2a1f_A247 Crystal Structure Of Uridylate Kinase Length = 247 5e-54
2bnd_A241 The Structure Of E.Coli Ump Kinase In Complex With 1e-51
2bne_A241 The Structure Of E. Coli Ump Kinase In Complex With 1e-51
2bnf_A241 The Structure Of E. Coli Ump Kinase In Complex With 5e-47
2jjx_A255 The Crystal Structure Of Ump Kinase From Bacillus A 1e-42
2va1_A256 Crystal Structure Of Ump Kinase From Ureaplasma Par 5e-40
2ij9_A219 Crystal Structure Of Uridylate Kinase From Archaeog 3e-16
2brx_A244 Ump Kinase From Pyrococcus Furiosus Without Ligands 1e-11
2ji5_A227 Structure Of Ump Kinase From Pyrococcus Furiosus Co 2e-11
2j4j_A226 Crystal Structure Of Uridylate Kinase From Sulfolob 9e-10
3ll9_A269 X-Ray Structures Of Isopentenyl Phosphate Kinase Le 2e-07
2bri_A225 Ump Kinase From Pyrococcus Furiosus Complexed With 3e-07
2bmu_A226 Ump Kinase From Pyrococcus Furiosus Complexed With 3e-07
4f6t_B268 The Crystal Structure Of The Molybdenum Storage Pro 3e-06
2ogx_B270 The Crystal Structure Of The Molybdenum Storage Pro 9e-06
2hmf_A 469 Structure Of A Threonine Sensitive Aspartokinase Fr 3e-04
3c1n_C 473 Crystal Structure Of Allosteric Inhibition Threonin 3e-04
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243 Back     alignment and structure 
Iteration: 1

 Score =  247 bits (630), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 120/243 (49%), Positives = 170/243 (69%), Gaps = 21/243 (8%)
Query: 81  NGMSKPSYKWQRVLLKVSGEALAGDHTQNIDPKV------------------AIVVGGGN 122
           N MS+ SY+  R+LLK+SGEAL GD    IDPKV                  A+V+GGGN
Sbjct: 2   NAMSELSYR--RILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGN 59
Query: 123 IFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI 182
           IFRGA  A  SG+DR + D++GMLATV+NA+ +Q  +E +G   RV +A ++++V E +I
Sbjct: 60  IFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFI 118
Query: 183 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN 242
           RRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR  EI A+++LKAT VDGVYD +P+++
Sbjct: 119 RRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKH 178
Query: 243 PNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 302
            +A   D+LTY EV  + L VMD  A  L +++++P+ +F +++PG + + + G ++GTL
Sbjct: 179 SDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTL 238
Query: 303 IGG 305
           + G
Sbjct: 239 VQG 241
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine Monophosphate Kinase From Mycobacterium Tuberculosis Length = 281 Back     alignment and structure
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase (Ump-Kinase) From Streptococcus Pyogenes Length = 252 Back     alignment and structure
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter Pylori Length = 240 Back     alignment and structure
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From Neisseria Meningitidis Length = 239 Back     alignment and structure
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase Length = 247 Back     alignment and structure
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp Length = 241 Back     alignment and structure
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump Length = 241 Back     alignment and structure
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp Length = 241 Back     alignment and structure
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus Anthracis (Ba1797) Length = 255 Back     alignment and structure
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum Length = 256 Back     alignment and structure
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219 Back     alignment and structure
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands Length = 244 Back     alignment and structure
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed With Utp Length = 227 Back     alignment and structure
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus Solfataricus In Complex With Ump And Amppcp To 2.1 Angstrom Resolution Length = 226 Back     alignment and structure
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase Length = 269 Back     alignment and structure
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Analog Amppnp Length = 225 Back     alignment and structure
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its Substrate Ump And Its Substrate Analog Amppnp Length = 226 Back     alignment and structure
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein (Mosto) From Azotobacter Vinelandii Loaded With Various Polyoxometalates Length = 268 Back     alignment and structure
>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein From Azotobacter Vinelandii Loaded With Polyoxotungstates (Wsto) Length = 270 Back     alignment and structure
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469 Back     alignment and structure
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
2ogx_B270 Molybdenum storage protein subunit beta; open alph 1e-105
4a7w_A240 Uridylate kinase; transferase; HET: GTP; 1.80A {He 1e-101
3ek6_A243 Uridylate kinase; UMPK unique GTP B site, alloster 1e-99
2a1f_A247 Uridylate kinase; PYRH, structural genomics, PSI, 2e-99
2brx_A244 Uridylate kinase; UMP kinase, amino acid kinase, p 3e-99
2va1_A256 Uridylate kinase; UMPK, transferase, pyrimidine bi 8e-98
2j4j_A226 Uridylate kinase; transferase, nucleoside monophos 4e-97
1ybd_A239 Uridylate kinase; alpha/beta/alpha fold, hexamer, 3e-96
3nwy_A281 Uridylate kinase; allosterically activated form, A 4e-94
1z9d_A252 Uridylate kinase, UK, UMP kinase; structural genom 7e-94
2jjx_A255 Uridylate kinase, UMP kinase; structural genomics, 4e-93
2ij9_A219 Uridylate kinase; structural genomics, protein str 5e-93
2ogx_A276 Molybdenum storage protein subunit alpha; open alp 3e-74
3k4o_A266 Isopentenyl phosphate kinase; small molecule kinas 3e-44
3ll5_A249 Gamma-glutamyl kinase related protein; alternate m 1e-16
3ll9_A269 Isopentenyl phosphate kinase; mevalonate biosynthe 3e-15
3d40_A286 FOMA protein; fosfomycin, antibiotic resistance, k 8e-13
3c1m_A 473 Probable aspartokinase; allosteric inhibition, thr 1e-12
3tvi_A 446 Aspartokinase; structural genomics, ACT domains, r 4e-11
2j0w_A 449 Lysine-sensitive aspartokinase 3; feedback inhibit 9e-11
2j5v_A367 Glutamate 5-kinase; proline biosynthesis, gamma gl 2e-10
2cdq_A 510 Aspartokinase; aspartate kinase, amino acid metabo 2e-09
2ako_A251 Glutamate 5-kinase; structural genomics, PSI, prot 2e-08
3ab4_A 421 Aspartokinase; aspartate kinase, concerted inhibit 4e-07
3l76_A 600 Aspartokinase; allostery, ACT domains, kinase tran 8e-07
1e19_A314 Carbamate kinase-like carbamoylphosphate synthetas 2e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 5e-05
2we5_A310 Carbamate kinase 1; arginine catabolism, arginine 2e-04
2e9y_A316 Carbamate kinase; transferase, structural genomics 2e-04
3kzf_A317 Carbamate kinase; arginine dihydrolase pathway, gi 3e-04
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 Back     alignment and structure
 Score =  308 bits (791), Expect = e-105
 Identities = 49/255 (19%), Positives = 97/255 (38%), Gaps = 18/255 (7%)

Query: 70  SMSPFGVTLNDNGMSKPSYKWQRVLLKVSGEALAGDHTQNIDP------------KVAIV 117
           S++   +       +         ++K+ G+++       + P            K+ I 
Sbjct: 16  SLTDPQLQAAAAAAADFRILPDATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIG 75

Query: 118 VGGGNIFRGASAAGNS-GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE 176
            G G   R   +     GL       +G      NA  L   +   GIP           
Sbjct: 76  TGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVP 135

Query: 177 VAEPYIRRRAVRHLEKGRVVIFAAGTGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVY 235
           ++   +       +   ++ +  A  G  P + TD    L   +   + ++   + DG+Y
Sbjct: 136 LSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLY 195

Query: 236 DDNPRRNPNARLLDTLTYQEVTSKDL--SVMDMTAITLCQ--ENNIPVVVFNLNQPGNIA 291
             NP+ + +A  +  ++  E+ +K L  S+++   + L Q  ++   V V N   PGN+ 
Sbjct: 196 TANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLT 255

Query: 292 KAIQGERVGTLIGGT 306
           +A+ GE VGT+I  +
Sbjct: 256 RALAGEHVGTIITAS 270
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 Back     alignment and structure
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 Back     alignment and structure
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 Back     alignment and structure
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 Back     alignment and structure
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 Back     alignment and structure
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 Back     alignment and structure
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 Back     alignment and structure
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 Back     alignment and structure
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 Back     alignment and structure
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 Back     alignment and structure
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 Back     alignment and structure
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 Back     alignment and structure
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Length = 266 Back     alignment and structure
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249 Back     alignment and structure
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269 Back     alignment and structure
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Length = 286 Back     alignment and structure
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446 Back     alignment and structure
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449 Back     alignment and structure
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Length = 367 Back     alignment and structure
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 Back     alignment and structure
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Length = 251 Back     alignment and structure
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 Back     alignment and structure
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 Back     alignment and structure
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Length = 314 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Length = 310 Back     alignment and structure
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} Length = 316 Back     alignment and structure
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Length = 317 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3nwy_A281 Uridylate kinase; allosterically activated form, A 100.0
3ek6_A243 Uridylate kinase; UMPK unique GTP B site, alloster 100.0
1ybd_A239 Uridylate kinase; alpha/beta/alpha fold, hexamer, 100.0
2a1f_A247 Uridylate kinase; PYRH, structural genomics, PSI, 100.0
4a7w_A240 Uridylate kinase; transferase; HET: GTP; 1.80A {He 100.0
1z9d_A252 Uridylate kinase, UK, UMP kinase; structural genom 100.0
2va1_A256 Uridylate kinase; UMPK, transferase, pyrimidine bi 100.0
2jjx_A255 Uridylate kinase, UMP kinase; structural genomics, 100.0
2j4j_A226 Uridylate kinase; transferase, nucleoside monophos 100.0
2brx_A244 Uridylate kinase; UMP kinase, amino acid kinase, p 100.0
2ij9_A219 Uridylate kinase; structural genomics, protein str 100.0
2j5v_A367 Glutamate 5-kinase; proline biosynthesis, gamma gl 100.0
3ll9_A269 Isopentenyl phosphate kinase; mevalonate biosynthe 100.0
3ll5_A249 Gamma-glutamyl kinase related protein; alternate m 100.0
2ogx_A276 Molybdenum storage protein subunit alpha; open alp 100.0
2ako_A251 Glutamate 5-kinase; structural genomics, PSI, prot 100.0
2ap9_A299 NAG kinase, acetylglutamate kinase, AGK; structura 99.97
2rd5_A298 Acetylglutamate kinase-like protein; protein-prote 99.97
2ogx_B270 Molybdenum storage protein subunit beta; open alph 99.97
2v5h_A321 Acetylglutamate kinase; amino-acid biosynthesis, t 99.97
3ab4_A 421 Aspartokinase; aspartate kinase, concerted inhibit 99.97
3l76_A 600 Aspartokinase; allostery, ACT domains, kinase tran 99.97
2bty_A282 Acetylglutamate kinase; N-acetyl-L-glutamate kinas 99.96
3d40_A286 FOMA protein; fosfomycin, antibiotic resistance, k 99.96
3k4o_A266 Isopentenyl phosphate kinase; small molecule kinas 99.96
2buf_A300 Acetylglutamate kinase; acetyglutamate kinase, ADP 99.96
2egx_A269 Putative acetylglutamate kinase; struc genomics, N 99.96
1gs5_A258 Acetylglutamate kinase; carbamate kinase, amino ac 99.96
2cdq_A 510 Aspartokinase; aspartate kinase, amino acid metabo 99.96
2j0w_A 449 Lysine-sensitive aspartokinase 3; feedback inhibit 99.95
3l86_A279 Acetylglutamate kinase; ARGB, amino-acid biosynthe 99.95
2e9y_A316 Carbamate kinase; transferase, structural genomics 99.95
2we5_A310 Carbamate kinase 1; arginine catabolism, arginine 99.95
3d2m_A 456 Putative acetylglutamate synthase; protein-COA-Glu 99.94
3tvi_A 446 Aspartokinase; structural genomics, ACT domains, r 99.94
1e19_A314 Carbamate kinase-like carbamoylphosphate synthetas 99.94
3zzh_A307 Acetylglutamate kinase; transferase, arginine bios 99.93
3c1m_A 473 Probable aspartokinase; allosteric inhibition, thr 99.92
4ab7_A 464 Protein Arg5,6, mitochondrial; transferase, argini 99.92
3s6g_A 460 N-acetylglutamate kinase / N-acetylglutamate SYNT; 99.91
4axs_A332 Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm 99.91
3kzf_A317 Carbamate kinase; arginine dihydrolase pathway, gi 99.9
3s6k_A 467 Acetylglutamate kinase; synthase, transferase; 2.8 99.88
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Back     alignment and structure
Probab=100.00  E-value=3e-42  Score=323.27  Aligned_cols=216  Identities=53%  Similarity=0.884  Sum_probs=188.2

Q ss_pred             CCCCCeEEEEECccccccCCCCCCC------------------CCeEEEEChhHHHHHHHHcccCCCCccHHHHHHHHHH
Q 021163           87 SYKWQRVLLKVSGEALAGDHTQNID------------------PKVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLAT  148 (316)
Q Consensus        87 ~~~~k~iVIKiGGS~i~~~~~~~~~------------------~~vVIVhGGG~~a~G~~~l~~~gl~~~~~d~v~~la~  148 (316)
                      ..++|+||||+||+++++++ ..++                  .++|||||||++++|+... ..+++....|+++++++
T Consensus        47 ~~~~krIViKlGGs~L~~~~-~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~-~~gl~~~~~d~~g~lat  124 (281)
T 3nwy_A           47 LSGYSRVLLKLGGEMFGGGQ-VGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGT  124 (281)
T ss_dssp             CCCCSEEEEEECGGGGGTTS-SSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTT-TTTCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEEEEchhhccCCC-CCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHH-hcCCCccchhHHHHHHH
Confidence            34789999999999999864 2222                  3689999999999888533 25788888899999999


Q ss_pred             HHHHHHHHHHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEe
Q 021163          149 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKA  228 (316)
Q Consensus       149 ~lna~Lv~~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~Liil  228 (316)
                      ++|+.+++.+|+++|++++.|++++..++.++|++.+..++|++|.|||++++.|+++++||++|+++|.+|+||+|+++
T Consensus       125 ~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~Liil  204 (281)
T 3nwy_A          125 VMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMA  204 (281)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence            99999998999999999988999999888888877666689999999999998889999999999999999999999999


Q ss_pred             cccCcccccCCCCCCCCceeccccHHHHhhCCCCCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEe
Q 021163          229 TNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG  304 (316)
Q Consensus       229 TDVdGVyt~dP~~~p~aklI~~It~~e~~~lG~~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~  304 (316)
                      |||||||++||+.+|++++|+++++.|+.+.|.+++|++|++.|.++|++++|+|+++|++|.++++|+.+||+|.
T Consensus       205 TDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          205 KAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             ESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             eccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence            9999999999999999999999999998877889999999999999999999999999999999999999999985
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A Back     alignment and structure
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Back     alignment and structure
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Back     alignment and structure
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Back     alignment and structure
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Back     alignment and structure
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Back     alignment and structure
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Back     alignment and structure
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Back     alignment and structure
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Back     alignment and structure
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Back     alignment and structure
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A Back     alignment and structure
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Back     alignment and structure
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Back     alignment and structure
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Back     alignment and structure
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 Back     alignment and structure
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 Back     alignment and structure
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} Back     alignment and structure
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Back     alignment and structure
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* Back     alignment and structure
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Back     alignment and structure
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Back     alignment and structure
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 Back     alignment and structure
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* Back     alignment and structure
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* Back     alignment and structure
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 Back     alignment and structure
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* Back     alignment and structure
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Back     alignment and structure
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Back     alignment and structure
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} Back     alignment and structure
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} Back     alignment and structure
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* Back     alignment and structure
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* Back     alignment and structure
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Back     alignment and structure
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 Back     alignment and structure
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* Back     alignment and structure
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* Back     alignment and structure
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* Back     alignment and structure
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} Back     alignment and structure
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} Back     alignment and structure
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d2a1fa1236 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi 7e-52
d1ybda1236 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri 1e-46
d1z9da1238 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc 4e-44
d2ij9a1219 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog 2e-43
d2brxa1225 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc 7e-32
d2cdqa1304 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar 2e-18
d2hmfa1302 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja 5e-17
d2j0wa1292 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli 4e-16
d2akoa1250 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobact 5e-12
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score =  168 bits (427), Expect = 7e-52
 Identities = 98/237 (41%), Positives = 147/237 (62%), Gaps = 19/237 (8%)

Query: 84  SKPSYKWQRVLLKVSGEALAGDHTQNIDPKVA-----------------IVVGGGNIFRG 126
           S+P YK  R+LLK+SGEAL G+    IDP +                   VV GG     
Sbjct: 1   SQPIYK--RILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFR 58

Query: 127 ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRA 186
            +    +G++R   D++GMLATVMN + ++ ++    +  ++ +AF+++ + + Y    A
Sbjct: 59  GAKLAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEA 118

Query: 187 VRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 246
           ++ L + RVVIF+AGTGNPFFTTD+ A LR  EI A+VVLKAT VDGVYD +P +NP+A+
Sbjct: 119 IKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAK 178

Query: 247 LLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 303
           L   L+Y EV  K+L VMD++A TL +++ +P+ VFN+ +PG + + + G   GT I
Sbjct: 179 LYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 Back     information, alignment and structure
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238 Back     information, alignment and structure
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 Back     information, alignment and structure
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 Back     information, alignment and structure
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 Back     information, alignment and structure
>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 Back     information, alignment and structure
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 Back     information, alignment and structure
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d2brxa1225 Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 100.0
d2a1fa1236 Uridylate kinase PyrH {Haemophilus influenzae [Tax 100.0
d1ybda1236 Uridylate kinase PyrH {Neisseria meningitidis [Tax 100.0
d2ij9a1219 Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax 100.0
d2akoa1250 Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 99.97
d2j0wa1292 Aspartokinase {Escherichia coli [TaxId: 562]} 99.97
d1z9da1238 Uridylate kinase PyrH {Streptococcus pyogenes [Tax 99.97
d2cdqa1304 Aspartokinase {Thale cress (Arabidopsis thaliana) 99.97
d2hmfa1302 Aspartokinase {Methanococcus jannaschii [TaxId: 21 99.94
d2bufa1300 N-acetyl-l-glutamate kinase {Pseudomonas aeruginos 99.94
d2btya1282 N-acetyl-l-glutamate kinase {Thermotoga maritima [ 99.94
d2ap9a1291 N-acetyl-l-glutamate kinase {Mycobacterium tubercu 99.93
d1e19a_313 Carbamate kinase {Archaeon Pyrococcus furiosus [Ta 99.92
d1b7ba_307 Carbamate kinase {Enterococcus faecium [TaxId: 135 99.88
d1gs5a_258 N-acetyl-l-glutamate kinase {Escherichia coli [Tax 99.83
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.4e-37  Score=275.68  Aligned_cols=200  Identities=28%  Similarity=0.464  Sum_probs=166.9

Q ss_pred             eEEEEECccccccCCCC--CC------------CCCeEEEEChhHHHHHHH-HcccCCCCccHHHHHHHHHHHHHHHHHH
Q 021163           92 RVLLKVSGEALAGDHTQ--NI------------DPKVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQ  156 (316)
Q Consensus        92 ~iVIKiGGS~i~~~~~~--~~------------~~~vVIVhGGG~~a~G~~-~l~~~gl~~~~~d~v~~la~~lna~Lv~  156 (316)
                      +||||+||++|++++..  .+            ..++|||||||++++++. ..+..+.+....++.+..++++|+.+++
T Consensus         2 rIViKiGGs~l~~~~~~~~~i~~l~~~I~~l~~~~~~viV~ggG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (225)
T d2brxa1           2 RIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLI   81 (225)
T ss_dssp             EEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeehhhcCCCCCCHHHHHHHHHHHHHHHcCCcEEEEECccHHHHHHHHhhhhcchhhHHHHHhhhhHHHHHHHHHH
Confidence            68999999999987532  11            136799999999999885 3445677777778888889999999998


Q ss_pred             HHHHhCCCCeEEEeccccccccchHHHHHHHHHHhCCCEEEEeCCCCCCCCCchHHHHHHHHhcCCcEEEEecccCcccc
Q 021163          157 ATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYD  236 (316)
Q Consensus       157 ~~L~~~Gi~a~~l~~~~~~~~~~~~i~~~l~~lL~~g~IPVv~g~~g~~~~~sD~iAa~LA~~L~Ad~LiilTDVdGVyt  236 (316)
                      ..|+..|++...          +.+.  +..++++.+.+||+++++  ++.+||++|+++|.+|+|++|++|||||||||
T Consensus        82 ~~l~~~~~~~~~----------~~~~--~~~~~l~~~~ipv~~~~~--~~~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt  147 (225)
T d2brxa1          82 AALREKAYPVVV----------EDFW--EAWKAVQLKKIPVMGGTH--PGHTTDAVAALLAEFLKADLLVVITNVDGVYT  147 (225)
T ss_dssp             HHHGGGBCSSCB----------CSHH--HHHHHHHTTCBCEECCCS--TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBS
T ss_pred             HHHHhhhccccc----------ccHH--HHHHHHHhcccccccCCC--CCcchhHHHHHHHHHhCchhhhhhhhhhhhhh
Confidence            899999988642          1121  234578899999998764  67899999999999999999999999999999


Q ss_pred             cCCCCCCCCceeccccHHHHhhC--------CC-CCchHHHHHHHHhCCCcEEEEeCCCcchHHHHhcCCCcceEEec
Q 021163          237 DNPRRNPNARLLDTLTYQEVTSK--------DL-SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG  305 (316)
Q Consensus       237 ~dP~~~p~aklI~~It~~e~~~l--------G~-~v~k~~Aa~~a~~~gI~v~I~ng~~p~~i~~~l~G~~~GT~I~~  305 (316)
                      +||+.+|+|++|++|+++|+.++        |. ++++..|++.|.++|++++|+||++|++|.++++|+.+||+|.|
T Consensus       148 ~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         148 ADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             SCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             cccccccccccceEEecchHHHHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            99999999999999999988764        12 24455699999999999999999999999999999999999976
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} Back     information, alignment and structure
>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure