Citrus Sinensis ID: 021164

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYSSWS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHcccccccccHHcccccccccHHHHHHHHHHHHHcccccHcHccHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHccccccccccccccccccccccccHcHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mrkpenngngnshsnsngnklrkglwspeeDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINylrpdlkrgafspqEEELIIHLHSLLGNRWSQIaarlpgrtdneiKNFWNSTIKKRLknlssssstpspnasdslissdqpnkDQLIAAAgsssefmsmpmynnmdtssssssMMVHMIdslpmlehglnmmgcssngyminttscisqvgmnncgnfggefyvpplesiscCIEENIKAensfydhrnpnnlntnnnnannnkvdqniggvgnllqgeeiklgeWDFEELMkdvssfpyldfyssws
Flexible Loop (DISEMBL)
mrkpenngngnshsnsngnklrkGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAArlpgrtdneiKNFWNSTIKKRlknlssssstpspnasdslissdqpnKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMkdvssfpyldfyssws
Low Complexity Region (SEG)
MRKPEnngngnshsnsngnKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQeeeliihlhsllGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLssssstpspnasdsLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTssssssMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRnpnnlntnnnnannnkvdqnIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYSSWS
Disordered region (IsUnstruct)
*********************************LMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI****************************************************************MIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFY**********************NIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYS***
Disordered Region (DISOPRED)
******************NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK************************************************************************************************************VPPLESISCCIEENIKAEN****HRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYSSW*
Disordered Region (DISEMBL)
*******************KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK*********************QPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYSSWS
Disordered Region (DISPRO)
************HSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPS**************************************************IDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEE***AENSFYDHRNPNNLNTNNNNANN********GVG****GEEIKLGEWDFEELMKDVSSFPYLDFY****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFYSSWS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9LXV2	280	Transcription factor MYB4	no	no	0.876	0.989	0.458	4e-58
Q8LPH6	352	Transcription factor MYB8	no	no	0.420	0.377	0.684	2e-49
P20027	302	Myb-related protein Hv33	N/A	no	0.405	0.423	0.658	3e-45
Q50EX6	294	Protein ODORANT1 OS=Petun	N/A	no	0.506	0.544	0.509	8e-42
O49608	274	Transcription factor MYB3	no	no	0.395	0.456	0.614	4e-41
Q9SZP1	282	Transcription repressor M	no	no	0.493	0.553	0.5	8e-41
Q9S9K9	257	Transcription factor MYB3	no	no	0.325	0.400	0.699	6e-40
P81393	232	Myb-related protein 308 O	N/A	no	0.325	0.443	0.679	2e-39
P20025	255	Myb-related protein Zm38	N/A	no	0.392	0.486	0.564	3e-39
P20026	267	Myb-related protein Hv1 O	N/A	no	0.325	0.385	0.689	5e-39

>sp|Q9LXV2|MYB46_ARATH Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1

 Score =  225 bits (573), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 145/316 (45%), Positives = 179/316 (56%), Gaps = 39/316 (12%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE     ++H      K++KGLWSPEED KLM YML NGQGCWSDVA+NAGLQRCGK
Sbjct: 1   MRKPEVAIAASTHQVK---KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGK 57

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFSPQEE+LII  HS+LGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 58  SCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNST 117

Query: 121 IKKRLKNLSSS-SSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSS 179
           IKKRLK +S + +   + ++S +  S    N    +        FMS+     ++ S   
Sbjct: 118 IKKRLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPS--- 174

Query: 180 SSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLESIS 239
              + H+  + P     +    C+      + T  +  +   N G   GE Y PPLE   
Sbjct: 175 ---LTHIQTNNPFPTGNMISHPCND-----DFTPYVDGIYGVNAG-VQGELYFPPLEC-- 223

Query: 240 CCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEEIKLGEWDFEEL 299
                    E  +Y           N N NN+  + N  G GN  +G       WD ++L
Sbjct: 224 --------EEGDWY-----------NANINNHLDELNTNGSGNAPEGMRPVEEFWDLDQL 264

Query: 300 M-KDVSSFPYLDFYSS 314
           M  +V SF Y +F  S
Sbjct: 265 MNTEVPSF-YFNFKQS 279

Transcription activator. Involved in the regulation of secondary wall biosynthesis in fibers and vessels.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPH6|MYB86_ARATH Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1

 Score =  196 bits (498), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 91/133 (68%), Positives = 104/133 (78%)

Query: 13  HSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP 72
           HS     KLRKGLWSPEED+KL+NY+ ++G GCWS V + AGLQRCGKSCRLRWINYLRP
Sbjct: 4   HSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRP 63

Query: 73  DLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSS 132
           DLKRGAFS  EE LII LH+ LGNRWSQIA RLPGRTDNEIKNFWNS +KK+L+      
Sbjct: 64  DLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLRRKGIDP 123

Query: 133 STPSPNASDSLIS 145
           +T  P  ++ L S
Sbjct: 124 TTHKPLITNELQS 136

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P20027|MYB3_HORVU Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3

 Score =  182 bits (462), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/129 (65%), Positives = 100/129 (77%), Gaps = 1/129 (0%)

Query: 10  GNSHSNSNGN-KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWIN 68
           G   S + G  K+RKGLWSPEED+KL N+++++G GCWS V R A L RCGKSCRLRWIN
Sbjct: 2   GRPSSGAVGQPKVRKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWIN 61

Query: 69  YLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL 128
           YLRPDLKRG FS QEE+ I+ LH +LGNRWSQIA+ LPGRTDNEIKNFWNS IKK+L+  
Sbjct: 62  YLRPDLKRGCFSQQEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKLRQQ 121

Query: 129 SSSSSTPSP 137
               +T  P
Sbjct: 122 GIDPATHKP 130

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

>sp|Q50EX6|ODO1_PETHY Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1

 Score =  171 bits (432), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 109/161 (67%), Gaps = 1/161 (0%)

Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           ++KG W+ EED KL++++L NGQ CW  V + AGL+RCGKSCRLRW NYLRPDLKRG  S
Sbjct: 12  VKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLS 71

Query: 81  PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNAS 140
             EE+L+I LHS LGNRWS+IAARLPGRTDNEIKN WN+ IKK+L  +     T  P   
Sbjct: 72  DAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKLLKMGIDPVTHEPLKK 131

Query: 141 DSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSS 181
           ++ + SDQP  +          +   +P   N+  ++++S+
Sbjct: 132 EANL-SDQPTTESDQNKENGHQQVQVVPQSTNVTAAAATST 171

R2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development.

Petunia hybrida (taxid: 4102)

>sp|O49608|MYB32_ARATH Transcription factor MYB32 OS=Arabidopsis thaliana GN=MYB32 PE=2 SV=1

 Score =  168 bits (426), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 78/127 (61%), Positives = 99/127 (77%), Gaps = 2/127 (1%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG W+ EEDDKL++Y+  +G+GCW  + R+AGLQRCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDDKLISYIKAHGEGCWRSLPRSAGLQRCGKSCRLRWINYLRPDLKRGNFTLE 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL--KNLSSSSSTPSPNAS 140
           E++LII LHSLLGN+WS IA RLPGRTDNEIKN+WN+ +K++L  K +  ++  P     
Sbjct: 74  EDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRPINETK 133

Query: 141 DSLISSD 147
            S  SSD
Sbjct: 134 TSQDSSD 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZP1|MYB4_ARATH Transcription repressor MYB4 OS=Arabidopsis thaliana GN=MYB4 PE=1 SV=1

 Score =  167 bits (423), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 104/156 (66%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG W+ EED++L+ Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDERLVAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNASDS 142
           E+ELII LHSLLGN+WS IA RLPGRTDNEIKN+WN+ I+++L N     ++  P    S
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLINRGIDPTSHRPIQESS 133

Query: 143 LISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSS 178
                +P + + + +   +  F S P       S S
Sbjct: 134 ASQDSKPTQLEPVTSNTINISFTSAPKVETFHESIS 169

Transcription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9K9|MYB3_ARATH Transcription factor MYB3 OS=Arabidopsis thaliana GN=MYB3 PE=1 SV=1

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 72/103 (69%), Positives = 88/103 (85%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG W+ EED  L++Y+ K+G+GCW  + R AGLQRCGKSCRLRW+NYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDQLLVDYIRKHGEGCWRSLPRAAGLQRCGKSCRLRWMNYLRPDLKRGNFTEE 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           E+ELII LHSLLGN+WS IA RLPGRTDNEIKN+WN+ IK++L
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRKL 116

Arabidopsis thaliana (taxid: 3702)

>sp|P81393|MYB08_ANTMA Myb-related protein 308 OS=Antirrhinum majus GN=MYB308 PE=2 SV=1

 Score =  163 bits (412), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 70/103 (67%), Positives = 87/103 (84%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG W+ EEDD+L+ Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG F+ +
Sbjct: 14  KGAWTKEEDDRLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEE 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           E+ELII LHSLLGN+WS IA RLPGRTDNEIKN+WN+ I+++L
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|P20025|MYB38_MAIZE Myb-related protein Zm38 OS=Zea mays PE=2 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 70/124 (56%), Positives = 95/124 (76%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           +G W+ EED++L+ Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG F+  
Sbjct: 14  RGAWTKEEDERLVAYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTAD 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNASDS 142
           E++LI+ LHSLLGN+WS IAARLPGRTDNEIKN+WN+ ++++L        T  P A+D+
Sbjct: 74  EDDLIVKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHVRRKLLGRGIDPVTHRPIAADA 133

Query: 143 LISS 146
           +  +
Sbjct: 134 VTVT 137

Transcription factor that regulates negatively genes involved in anthocyanin biosynthesis.

Zea mays (taxid: 4577)

>sp|P20026|MYB1_HORVU Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1

 Score =  161 bits (408), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 86/103 (83%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG W+ EEDD+L  Y+  +G+GCW  + + AGL RCGKSCRLRWINYLRPDLKRG FS +
Sbjct: 14  KGAWTKEEDDRLTAYIKAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFSHE 73

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           E+ELII LHSLLGN+WS IA RLPGRTDNEIKN+WN+ I+++L
Sbjct: 74  EDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL 116

Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
356542046	336	PREDICTED: transcription factor MYB46-li	0.952	0.895	0.602	4e-91
225435450	325	PREDICTED: transcription factor MYB46 [V	0.952	0.926	0.589	2e-90
356541195	327	PREDICTED: transcription factor MYB46-li	0.936	0.905	0.600	3e-89
327412637	328	putative MYB transcription factor [Rosa	0.930	0.896	0.561	1e-85
388503650	312	unknown [Lotus japonicus]	0.892	0.903	0.571	1e-81
356547283	331	PREDICTED: transcription factor MYB46-li	0.949	0.906	0.555	1e-81
71041096	343	MYB20 [Malus x domestica]	0.968	0.892	0.528	1e-80
224059568	281	predicted protein [Populus trichocarpa]	0.848	0.953	0.546	4e-77
224104065	333	predicted protein [Populus trichocarpa]	0.939	0.891	0.517	1e-75
357454285	347	MYB transcription factor [Medicago trunc	0.933	0.850	0.550	4e-74

>gi|356542046|ref|XP_003539482.1| PREDICTED: transcription factor MYB46-like [Glycine max]

 Score =  340 bits (873), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 206/342 (60%), Positives = 241/342 (70%), Gaps = 41/342 (11%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE +GN N+++N N NKLRKGLWSPEEDDKLMNYML +GQGCWSDVARNAGLQRCGK
Sbjct: 1   MRKPEVSGNNNNNNNIN-NKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGK 59

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFS QEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 60  SCRLRWINYLRPDLKRGAFSQQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 119

Query: 121 IKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMS------MPMYNNMD 174
           IKKRLKN+SS++   SPN S+   SS +PN   L  A  ++S          MPM+N+  
Sbjct: 120 IKKRLKNMSSNT---SPNGSE---SSYEPNNRDLNMAGFTTSNTQDQQHADFMPMFNSSS 173

Query: 175 TSSSSSSMMVH-MIDSLPMLEHGLNMMGCSSNGYMINTTSCISQ---------VGMNNCG 224
            S S  +M+++ +ID LPMLEHGLN M CS  G+  +T  C S          + + N G
Sbjct: 174 QSPSMHAMVLNSIIDRLPMLEHGLN-MPCSG-GFFNSTGPCFSSSQSGVDNKGIYLENGG 231

Query: 225 NFG-------GEFYVPPLESISCCIEENIKAE--------NSFYDHRNPNNLNTNNNNAN 269
            FG       G+ YVPPLES+S   + N+K E        NS++D  N   LN  N N+N
Sbjct: 232 VFGSVNIGAEGDVYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSILLNNCNINSN 291

Query: 270 NNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDF 311
           N + +   GGV NL Q EE+ +GEWD EELMKDVSSFP+LDF
Sbjct: 292 NKRAENRAGGVENLFQ-EELTIGEWDLEELMKDVSSFPFLDF 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435450|ref|XP_002282821.1| PREDICTED: transcription factor MYB46 [Vitis vinifera] gi|297746322|emb|CBI16378.3| unnamed protein product [Vitis vinifera]

 Score =  338 bits (866), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 197/334 (58%), Positives = 232/334 (69%), Gaps = 33/334 (9%)

Query: 1   MRKPE-NNGNGN-SHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRC 58
           MRKPE +  NG  S++ S G+KLRKGLWSPEEDDKLMNYML NGQGCWSDVARNAGLQRC
Sbjct: 1   MRKPEKSTANGACSNTTSTGSKLRKGLWSPEEDDKLMNYMLNNGQGCWSDVARNAGLQRC 60

Query: 59  GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN 118
           GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN
Sbjct: 61  GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN 120

Query: 119 STIKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSS 178
           STIKKRLKN   SSS PSPNASDS  SSDQP    ++    S  E   M MY  MD+SSS
Sbjct: 121 STIKKRLKN---SSSVPSPNASDS--SSDQPR--DVMGGLMSMREQGLMAMY--MDSSSS 171

Query: 179 SSSMMV-----HMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGG----- 228
             S+        MI+ LPMLE  ++M   +S  +  N   C++QVG+ +     G     
Sbjct: 172 PPSIQAMAALNQMIEPLPMLEPSVDMTSVNSGCF--NAPPCMTQVGILSAEGLYGDHVGL 229

Query: 229 ----------EFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIG 278
                     E + PP+ESIS     N   EN+F  + N N  N    N N++   +N+ 
Sbjct: 230 LGGGGGCVVGEQFFPPVESISMGENGNKTLENTFDRNPNNNPYNNVIINNNSSNKVENMV 289

Query: 279 GVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFY 312
           GVGN  +GE++++GEW+ E+LM+DVSSFP+LDF+
Sbjct: 290 GVGNFWEGEDLRIGEWNLEDLMRDVSSFPFLDFH 323

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541195|ref|XP_003539066.1| PREDICTED: transcription factor MYB46-like [Glycine max]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 203/338 (60%), Positives = 235/338 (69%), Gaps = 42/338 (12%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE +G  N+ +N    KLRKGLWSPEEDDKLMNYML +GQGCWSDVARNAGLQRCGK
Sbjct: 1   MRKPEVSGKNNNINN----KLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGK 56

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFSPQEEE+IIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 57  SCRLRWINYLRPDLKRGAFSPQEEEIIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 116

Query: 121 IKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMS-------MPMYNNM 173
           IKKRLKNLSS++   SPN S+   SS +PN   L  A  ++S           MPM+N+ 
Sbjct: 117 IKKRLKNLSSNT---SPNGSE---SSYEPNNKDLNMAGFTTSNTQQNQQHADFMPMFNSS 170

Query: 174 DTSSS--SSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCI--SQVGMN-------- 221
             S S  +++++  +ID LPMLEHGLNM   SS G+  +   C   SQ G++        
Sbjct: 171 SQSPSMHATTVLNSIIDRLPMLEHGLNM--TSSGGFFNSKGPCFSSSQSGVDNNKGFYLE 228

Query: 222 NCGNFG-------GEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVD 274
           N G FG       G+ YVPPLES +C  + N    N F D  +    N N NN+NN K  
Sbjct: 229 NGGVFGSVNIGAEGDMYVPPLESSTCNTDTN--NSNYFDDINSIILNNCNINNSNNIKRA 286

Query: 275 QN-IGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDF 311
           +N  GGV NL Q EE+ +GEWD EELMKDVSSFP+LDF
Sbjct: 287 ENRAGGVENLFQ-EELTIGEWDLEELMKDVSSFPFLDF 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412637|emb|CCA29107.1| putative MYB transcription factor [Rosa rugosa]

 Score =  322 bits (825), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 195/347 (56%), Positives = 233/347 (67%), Gaps = 53/347 (15%)

Query: 1   MRKPE----NNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ 56
           MRKPE    ++   N+ +NS  NKLRKGLWSPEED+KLM YML NGQGCWSDVARNAGL+
Sbjct: 1   MRKPEPSVVSSTGKNNKNNSMSNKLRKGLWSPEEDEKLMRYMLNNGQGCWSDVARNAGLE 60

Query: 57  RCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNF 116
           RCGKSCRLRWINYLRPDLKRGAFSPQEE+LIIH HSLLGNRWSQIAARLPGRTDNEIKNF
Sbjct: 61  RCGKSCRLRWINYLRPDLKRGAFSPQEEDLIIHFHSLLGNRWSQIAARLPGRTDNEIKNF 120

Query: 117 WNSTIKKRLKNLSS-SSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMS------MPM 169
           WNSTIKKRLK LSS SSST  PNASDS  SSDQPN      AAG    FM+      MP+
Sbjct: 121 WNSTIKKRLKVLSSFSSSTAPPNASDS--SSDQPNNKDFFTAAGGGGGFMNIIPPSMMPI 178

Query: 170 YNNMDTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQV------GMNNC 223
           Y   D+S  S+S++ HM D  PM+EHG         GY  N   C +Q+      G ++C
Sbjct: 179 YG--DSSMQSTSLINHMFDPFPMVEHG---------GYYNNGNPCTAQIGSSVGSGADDC 227

Query: 224 G-----------NFGGE--FYVPPLESISCC-IEENIKAENSFYDHRNPNNLNTNNNNAN 269
           G           N G E   +VPPL S+S    ++N+K E  FYD+ N  + + N     
Sbjct: 228 GFEENIEAFGNVNIGVEEDIFVPPLVSVSTTDQDQNLKTETIFYDNNNYYSNSNNIIKG- 286

Query: 270 NNKVDQNIGGVGNLLQGEE---IKLGEWDFEELMKDVSSFPYLDFYS 313
                +N+ GVGN  + ++   + +GEW++E+LMKDVSSFP+LD+ S
Sbjct: 287 -----ENMIGVGNYFEDDQDQGLTMGEWEWEDLMKDVSSFPFLDYQS 328

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503650|gb|AFK39891.1| unknown [Lotus japonicus]

 Score =  309 bits (791), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 184/322 (57%), Positives = 213/322 (66%), Gaps = 40/322 (12%)

Query: 20  KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
           KLRKGLWSPEEDDKLMNYML +GQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGA 
Sbjct: 3   KLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAS 62

Query: 80  SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNA 139
           SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL      PSPNA
Sbjct: 63  SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL------PSPNA 116

Query: 140 SDSLISSDQPNKDQLIAAAGSS-------SEFMSMPMYNNMDTSSSSSSMMV--HMIDSL 190
           S+   SS +PNK       G S        +F+ MPM+     S +++   V   MI+ L
Sbjct: 117 SE---SSCEPNKKDHNNNGGFSFNSTQQDVDFI-MPMFMTSSPSPTTTQATVLNTMIERL 172

Query: 191 PMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFY--------VPPLESI---S 239
           PMLEHG+  M  S  G   N      Q  ++N  N    FY        VPPLES+   +
Sbjct: 173 PMLEHGIMNMPASGAGGFFNAPPRFLQSEIDNDHNNIKGFYLENGVVEGVPPLESVIRTT 232

Query: 240 CCIEENIKAENS-------FYDHRNPNNLNTNNNNANNNK-VDQNIGGVGNLLQGEEIKL 291
              + ++K EN        ++D  + NN+  N   +NNNK   +N GGV   L  EE+ +
Sbjct: 233 TTSDHDLKVENKGDTNYSCYFD--DINNIVNNCYISNNNKRPHENRGGVQEDLCPEELTM 290

Query: 292 GEWDFEELMKDVSSFPYLDFYS 313
           GEWD E+LMKDV+SFP+LDF S
Sbjct: 291 GEWDLEDLMKDVASFPFLDFSS 312

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547283|ref|XP_003542045.1| PREDICTED: transcription factor MYB46-like [Glycine max]

 Score =  308 bits (790), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 189/340 (55%), Positives = 232/340 (68%), Gaps = 40/340 (11%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE     N+  N++  KLRKGLWSPEEDDKLMNYML +GQGCWSDVARNAGLQRCGK
Sbjct: 1   MRKPE--ACNNNTKNNSNKKLRKGLWSPEEDDKLMNYMLNHGQGCWSDVARNAGLQRCGK 58

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFSPQEEELIIH HSLLGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 59  SCRLRWINYLRPDLKRGAFSPQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNST 118

Query: 121 IKKRLKNL--SSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMS-----MPMYNNM 173
           IKKRLKN+  ++++++ SPNAS++ IS  +P+   L    G  S   +     +PM+ + 
Sbjct: 119 IKKRLKNMSSTTTTTSTSPNASETSIS--EPSNKDLNNMGGFISTLHNKHAGFVPMFGSS 176

Query: 174 DTSS--SSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINT--TSCISQVGMNN------- 222
            + S   +S++  +MI+  PMLE GL  M  +S GY   T  T C SQ  ++N       
Sbjct: 177 PSPSMMQTSTVFNNMIERFPMLEQGLINMP-ASGGYFEGTGSTPCFSQCEVHNNKGSCYL 235

Query: 223 ------CGNFG--GEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVD 274
                   N G  G+ +VPPLE+++C  EE   +  S++D    +++N+  NN NN  + 
Sbjct: 236 ENEVFESVNIGVEGDMFVPPLENVTCKREETTNS--SYFD----DDINSILNNCNNIGIA 289

Query: 275 QNIG--GVGNLLQGE-EIKLGEWDFEELMKDVSSFPYLDF 311
           +N    GV NL Q E     GEWDFEELMKDVSSFP+LDF
Sbjct: 290 ENKAHHGVENLFQQELATATGEWDFEELMKDVSSFPFLDF 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041096|gb|AAZ20436.1| MYB20 [Malus x domestica]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 185/350 (52%), Positives = 221/350 (63%), Gaps = 44/350 (12%)

Query: 1   MRKPENN---GNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQR 57
           MRKPE +      N+  N++ +KLRKGLWSPEEDDKLM YM+ NGQGCWSDVARNAGLQR
Sbjct: 1   MRKPEPSSAAAGKNNKENNSNSKLRKGLWSPEEDDKLMRYMINNGQGCWSDVARNAGLQR 60

Query: 58  CGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117
           CGKSCRLRWINYLRPDLKRGAF PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW
Sbjct: 61  CGKSCRLRWINYLRPDLKRGAFLPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 120

Query: 118 NSTIKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGS----SSEFMSMPMYNNM 173
           NSTIKKRLKNLSSS+   SPN SDS   +    KD  + AA        E   +P+Y + 
Sbjct: 121 NSTIKKRLKNLSSSNG--SPNTSDSSPEA----KDHRVVAASRFIIPGQEHGMVPIYMDS 174

Query: 174 DTSSSSSSMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQV-----GMNNCG---- 224
            +S   S+++ HM D  P L+     +     G   N   CI+Q      G ++C     
Sbjct: 175 TSSFMQSAVLSHMFDPFPALDIDQGGLTLPGAGGYYNANPCITQREIGVGGGDDCYNFGG 234

Query: 225 -----------NFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNN------NN 267
                         GE +VPPLES+S   ++NIK E ++ D +N N    N       N 
Sbjct: 235 NGGFGSGDVDIGVEGEIFVPPLESVS-IEDQNIKTETTYGDSKNNNIYYNNINSILTCNK 293

Query: 268 ANNNKVDQNIGGVGNLLQG--EEIKLGEWDFEELMKDV--SSFPYLDFYS 313
            N N   ++I GVGN      EE+ +G+WD E+LMKDV  SSFP+LD+ S
Sbjct: 294 TNKNIKGESIIGVGNYFDDDQEELTMGDWDLEDLMKDVSSSSFPFLDYQS 343

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059568|ref|XP_002299911.1| predicted protein [Populus trichocarpa] gi|222847169|gb|EEE84716.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (752), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 178/326 (54%), Positives = 217/326 (66%), Gaps = 58/326 (17%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE +G  N  SN    K +KGLWSPEEDDKLMNY+L NGQGCWSDVARNAGLQRCGK
Sbjct: 1   MRKPEASGKNNDISN----KFKKGLWSPEEDDKLMNYILNNGQGCWSDVARNAGLQRCGK 56

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFSPQEEE+ IHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 57  SCRLRWINYLRPDLKRGAFSPQEEEMTIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 116

Query: 121 IKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMD------ 174
           IKKRLK+L SS++  SPN SD   SS +P+K +++    +  E   +PM  NMD      
Sbjct: 117 IKKRLKSLQSSNA--SPNTSD---SSSEPSK-EVMGGFITMQEQGILPM--NMDPSLSSS 168

Query: 175 --TSSSSSSMMVH-MIDS-LPML--EHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGG 228
               +S  +M+++ M+D  LPML  +HGLNM                  +G  N G    
Sbjct: 169 SSLETSMQAMILNTMMDPLLPMLDHDHGLNMY-----------------IGGVNVG---- 207

Query: 229 EFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNNNANNNKVDQNIGGVGNLLQGEE 288
              +PPLES+S C+EEN K++ +  D       N+ + +  ++  D     +GN   GEE
Sbjct: 208 ---IPPLESVS-CMEENAKSQ-TIQD-------NSTDKHPYSSYTDNAAAEMGNFWHGEE 255

Query: 289 IKLGE-WDFEELMKDVSSFPYLDFYS 313
           +K+GE WD E+ M+DVS+ P LDF S
Sbjct: 256 LKVGEYWDLEDFMRDVSACPSLDFQS 281

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104065|ref|XP_002313303.1| predicted protein [Populus trichocarpa] gi|222849711|gb|EEE87258.1| predicted protein [Populus trichocarpa]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 179/346 (51%), Positives = 224/346 (64%), Gaps = 49/346 (14%)

Query: 1   MRKPENNGNGNSHSNS--NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRC 58
           MRKP+  G     SNS  N  KLRKGLWSPEED+KL+ YML NGQGCWSD+ARNAGLQRC
Sbjct: 1   MRKPDLVGKDRVPSNSSINKAKLRKGLWSPEEDEKLIKYMLTNGQGCWSDIARNAGLQRC 60

Query: 59  GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN 118
           GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLH++LGNRWSQIAARLPGRTDNEIKNFWN
Sbjct: 61  GKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHTILGNRWSQIAARLPGRTDNEIKNFWN 120

Query: 119 STIKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSS 178
           ST+KKRLK   +++ST SPN SD    S +P +D  I     + +  +M +   MD+SSS
Sbjct: 121 STLKKRLK--INNTSTSSPNDSD----SSEP-RDHAIGNIMPTHDPDTMTLC--MDSSSS 171

Query: 179 SSSMMVHMI-----DSLPMLEHGLNMMGCSSNGYMINTTSCISQVGM------------- 220
           SS  M  MI     DS  ML +  ++ G +S   + + ++C++QVGM             
Sbjct: 172 SSISMQGMITSNRFDSFSMLNNRYDVTGAAS---LFDMSTCLTQVGMGDGFYGDHYGILE 228

Query: 221 -NNCGNFGGEFYVPPLESISCCIEENIKAEN-------------SFYDHRNPNNLNTNNN 266
            NN      +  +PPLES S   EEN    N             + +D+   +N   NNN
Sbjct: 229 ANNKTGLESDLSLPPLESRS--FEENNTVSNNRIGMKSSSNNNNNCFDNTCFDNTCFNNN 286

Query: 267 NANNNKVDQNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFPYLDFY 312
                KV +++ G+ N  QGE +++GEWDFE LM++++SFP LDF+
Sbjct: 287 TDQRFKV-EDMLGLENHWQGENLRMGEWDFEGLMENITSFPLLDFH 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454285|ref|XP_003597423.1| MYB transcription factor [Medicago truncatula] gi|355486471|gb|AES67674.1| MYB transcription factor [Medicago truncatula]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 180/327 (55%), Positives = 215/327 (65%), Gaps = 32/327 (9%)

Query: 1   MRKPENNGNGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
           MRKPE   +  ++ N N  KLRKGLWSPEED+KLMNYM++NGQGCWSDVARNAGL+RCGK
Sbjct: 1   MRKPEI-CSTKNNININKKKLRKGLWSPEEDEKLMNYMVRNGQGCWSDVARNAGLERCGK 59

Query: 61  SCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST 120
           SCRLRWINYLRPDLKRGAFS QEEELIIH HSLLGNRWSQIAARLPGRTDNEIKNFWNST
Sbjct: 60  SCRLRWINYLRPDLKRGAFSTQEEELIIHFHSLLGNRWSQIAARLPGRTDNEIKNFWNST 119

Query: 121 IKKRLKNLSSSSSTPSPNASDSLISSDQPNKDQLIAAAGSSS-------EFMSMPMYNNM 173
           IKKRLKNLSSS+   SPN SD   SS +PNKD  I      S        +MSMPM+ + 
Sbjct: 120 IKKRLKNLSSST---SPNPSDE--SSPEPNKDFNIQQGSYISIQHANYNSYMSMPMFTSS 174

Query: 174 DTSSSSSSMMVHM-----IDSLPMLEHG------LNMMGC-SSNGYMINTTSCISQVGMN 221
            TS S S +   +     ID+LP+++H       +  M C SS  + +       + G+ 
Sbjct: 175 STSPSPSILQNTIFNTMNIDTLPVMDHSGYFNNTVTTMPCFSSQNHEVEIKGSYLENGVF 234

Query: 222 NCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNN--NANNNKVDQNIGG 279
              N G E     +E+  C IE N    + ++D    NN+ +N N   +NNNK++     
Sbjct: 235 GSVNIGVE---GDMEN-KCNIETNPNHSDYYFDDIKINNMLSNCNIIESNNNKIESRGEV 290

Query: 280 VGNLLQGEEIKLGEWDFEELMKDVSSF 306
           V NL Q E+  LGEWDFEELMKD +S 
Sbjct: 291 VENLFQ-EQFNLGEWDFEELMKDGASL 316

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2182275	280	MYB46 "myb domain protein 46"	0.699	0.789	0.489	6.1e-52
TAIR|locus:2103459	343	MYB83 "myb domain protein 83"	0.648	0.597	0.520	4.1e-49
TAIR|locus:2146804	352	MYB86 "myb domain protein 86"	0.338	0.303	0.719	7.5e-41
TAIR|locus:2027508	314	MYB50 "myb domain protein 50"	0.335	0.337	0.735	1.2e-40
TAIR|locus:2012375	366	MYB61 "AT1G09540" [Arabidopsis	0.338	0.292	0.719	1.6e-40
TAIR|locus:2195528	370	AtMYB103 "myb domain protein 1	0.338	0.289	0.626	1.2e-39
TAIR|locus:2088187	367	MYB26 "myb domain protein 26"	0.335	0.288	0.634	4.9e-37
TAIR|locus:2133382	348	MYB55 "myb domain protein 55"	0.338	0.307	0.638	2.1e-36
TAIR|locus:2087725	307	MYB67 "myb domain protein 67"	0.335	0.345	0.613	1.3e-34
TAIR|locus:2062040	371	MYB12 "myb domain protein 12"	0.632	0.539	0.357	1.7e-34

TAIR|locus:2182275 MYB46 "myb domain protein 46" [Arabidopsis thaliana (taxid:3702)]

 Score = 508 (183.9 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
 Identities = 116/237 (48%), Positives = 132/237 (55%)

Query:     1 MRKPEXXXXXXXXXXXXXXKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGK 60
             MRKPE              K++KGLWSPEED KLM YML NGQGCWSDVA+NAGLQRCGK
Sbjct:     1 MRKPEVAIAASTHQVK---KMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGK 57

Query:    61 SCRLRWINYLRPDLKRGAFSPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNST 120
             SCRLRWINYLRPDLKRGAFSPQ            GNRWSQIAARLPGRTDNEIKNFWNST
Sbjct:    58 SCRLRWINYLRPDLKRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNST 117

Query:   121 IKKRLKNLXXXXXXXXXXXXXXLISSDQP-NKDQLIAAAGSSSEFMSMPMYNNMDTXXXX 179
             IKKRLK +                +SD   N    +        FMS+     ++     
Sbjct:   118 IKKRLKKMSDTSNLINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQEQGFVNPS--- 174

Query:   180 XXMMVHMIDSLPMLEHGLNMMGCSSNGYMINTTSCISQVGMNNCGNFGGEFYVPPLE 236
                + H+  + P    G NM+    N    + T  +  +   N G   GE Y PPLE
Sbjct:   175 ---LTHIQTNNPF-PTG-NMISHPCND---DFTPYVDGIYGVNAG-VQGELYFPPLE 222

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:1901348 "positive regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2103459 MYB83 "myb domain protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 113/217 (52%), Positives = 133/217 (61%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             KLRKGLWSP+ED+KL+ YML NGQGCWSD+ARNAGL RCGKSCRLRWINYLRPDLKRG+F
Sbjct:    29 KLRKGLWSPDEDEKLIRYMLTNGQGCWSDIARNAGLLRCGKSCRLRWINYLRPDLKRGSF 88

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLXXXXXXXXXXX 139
             SPQ            GNRWSQIA RLPGRTDNEIKNFWNST+KKRLKN            
Sbjct:    89 SPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKRLKNNSNNNTSSGSSP 148

Query:   140 XXXLISSDQPNKDQLIAAAGSSSEFMSMPMYN-NMDTXXXXXXMMVHMIDSL-PMLEH-G 196
                  +S  P +DQ +   G+S+  M    ++ NM T      M      ++ PM+   G
Sbjct:   149 NNSNSNSLDP-RDQHVDMGGNSTSLMDDYHHDENMMTVGNTMRMDSSSPFNVGPMVNSVG 207

Query:   197 LN------MMGCSSNGY--MINTTSCISQVGMNNCGN 225
             LN      M+    NGY  M NT +  S  G+ + GN
Sbjct:   208 LNQLYDPLMISVPDNGYHQMGNTVNVFSVNGLGDYGN 244

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2146804 MYB86 "myb domain protein 86" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 77/107 (71%), Positives = 86/107 (80%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             KLRKGLWSPEED+KL+NY+ ++G GCWS V + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
             S              GNRWSQIA RLPGRTDNEIKNFWNS +KK+L+
Sbjct:    71 SQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKLR 117

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2027508 MYB50 "myb domain protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 78/106 (73%), Positives = 86/106 (81%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             KLRKGLWSPEED+KL+NY+ K+G GCWS V + AGL+RCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGAF 70

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
             S +            GNRWSQIAARLPGRTDNEIKN WNS IKK+L
Sbjct:    71 SSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKL 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2012375 MYB61 "AT1G09540" [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 77/107 (71%), Positives = 87/107 (81%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             KLRKGLWSPEED+KL+ ++  +G GCWS V + AGLQRCGKSCRLRWINYLRPDLKRGAF
Sbjct:    11 KLRKGLWSPEEDEKLLTHITNHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAF 70

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
             SP+            GNRWSQIA+RLPGRTDNEIKN WNS+IKK+LK
Sbjct:    71 SPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKKLK 117

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0010214 "seed coat development" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010089 "xylem development" evidence=IMP;RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0001944 "vasculature development" evidence=IMP

GO:0048364 "root development" evidence=IMP

TAIR|locus:2195528 AtMYB103 "myb domain protein 103" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 67/107 (62%), Positives = 84/107 (78%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             K+++GLWSPEED+KL+ Y+  +G GCWS+V   AGLQRCGKSCRLRWINYLRPD++RG F
Sbjct:    11 KVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRF 70

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
             SP+            GNRW+ IA+ LPGRTDNEIKN+WNS IKK+++
Sbjct:    71 SPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIR 117

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:1901430 "positive regulation of syringal lignin biosynthetic process" evidence=IMP

TAIR|locus:2088187 MYB26 "myb domain protein 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 73/115 (63%), Positives = 86/115 (74%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG---------LQRCGKSCRLRWINYL 70
             K+++GLWSPEED+KL+NY+   G GCWS V ++AG         LQRCGKSCRLRWINYL
Sbjct:    11 KVKRGLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWINYL 70

Query:    71 RPDLKRGAFSPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
             RPDLKRG+FSPQ            GNRW+QIA  LPGRTDNE+KNFWNS+IKK+L
Sbjct:    71 RPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKL 125

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009901 "anther dehiscence" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009834 "secondary cell wall biogenesis" evidence=IMP

TAIR|locus:2133382 MYB55 "myb domain protein 55" [Arabidopsis thaliana (taxid:3702)]

 Score = 392 (143.0 bits), Expect = 2.1e-36, P = 2.1e-36
 Identities = 76/119 (63%), Positives = 84/119 (70%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG------------LQRCGKSCRLRWI 67
             KLRKGLWSPEED+KL+ Y+ K G GCWS V + AG            LQRCGKSCRLRWI
Sbjct:    11 KLRKGLWSPEEDEKLLRYITKYGHGCWSSVPKQAGTFLFIQIHLLFGLQRCGKSCRLRWI 70

Query:    68 NYLRPDLKRGAFSPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
             NYLRPDLKRGAFS              GNRWSQIAA+LPGRTDNEIKN WNS +KK+L+
Sbjct:    71 NYLRPDLKRGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLR 129

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2087725 MYB67 "myb domain protein 67" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 65/106 (61%), Positives = 81/106 (76%)

Query:    20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
             K+++GLWSPEED+KL+ Y+  +G   WS V + AGLQRCGKSCRLRWINYLRPDL+RG+F
Sbjct:    21 KVKRGLWSPEEDEKLLRYITTHGHPSWSSVPKLAGLQRCGKSCRLRWINYLRPDLRRGSF 80

Query:    80 SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
             + +            GN+W+QIA  LPGRTDNE+KNFWNS IKK+L
Sbjct:    81 NEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKKL 126

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2062040 MYB12 "myb domain protein 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 1.7e-34, Sum P(2) = 1.7e-34
 Identities = 75/210 (35%), Positives = 104/210 (49%)

Query:    21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
             +++G W+ EED  L NY+  NG+G W  + +NAGL+RCGKSCRLRWINYLR DLKRG  +
Sbjct:    12 IKRGRWTAEEDQILSNYIQSNGEGSWRSLPKNAGLKRCGKSCRLRWINYLRSDLKRGNIT 71

Query:    81 PQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLXXXXXXXXXXXX 140
             P+            GNRWS IA  LPGRTDNEIKN+WNS + ++L N             
Sbjct:    72 PEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRKLHNFIRKPSISQDVSA 131

Query:   141 XXLIS-SDQPNKDQLIAAAGSSSEFMSMPMYNNMDTXXXXXXMMVHMIDSLPMLEHGLNM 199
               + + S  P   Q     G +S     P  +   T             S P  E   ++
Sbjct:   132 VIMTNASSAPPPPQAKRRLGRTSRSAMKPKIHRTKTRKTKKT-------SAPP-EPNADV 183

Query:   200 MGCSSNGYMINTTSCISQVGMNNCGNFGGE 229
              G      M+ ++   +++G   C  +G +
Sbjct:   184 AGADKEALMVESSGAEAELG-RPCDYYGDD 212

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009813 "flavonoid biosynthetic process" evidence=RCA;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00024611001 SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (325 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	8e-61
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	2e-40
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-12
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-12
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	6e-12
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	2e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-06
cd11659	53	cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding d	0.001

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  200 bits (509), Expect = 8e-61
 Identities = 101/206 (49%), Positives = 126/206 (61%), Gaps = 14/206 (6%)

Query: 13  HSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP 72
           HS     KLRKGLWSPEED+KL+ ++ K G GCWS V + AGLQRCGKSCRLRWINYLRP
Sbjct: 4   HSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRP 63

Query: 73  DLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSS 132
           DLKRG FS QEE LII LH++LGNRWSQIAA+LPGRTDNEIKN WNS +KK+L+      
Sbjct: 64  DLKRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDP 123

Query: 133 STPSP-----NASDSLISSDQPNKDQLIAAAGSSSEFMSMPMYNNMDTSSSSSSMMVHMI 187
           +T  P     N  D    +D  +     A++  S+E       N +   +S     +   
Sbjct: 124 NTHKPLSEVENGEDKNPPTDDKSDK---ASSVVSNEL------NLLKADNSKPLAALQEK 174

Query: 188 DSLPMLEHGLNMMGCSSNGYMINTTS 213
            S  +   G  +   SS+   IN ++
Sbjct: 175 RSSSISPAGYQLEVESSSSSKINNSN 200

Length = 459

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  141 bits (357), Expect = 2e-40
 Identities = 63/117 (53%), Positives = 86/117 (73%)

Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           +++G W+ EED+ L++++ K G+G W  + + AGL RCGKSCRLRW+NYLRP +KRG  +
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 81  PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSP 137
             EE+LI+ LH LLGNRWS IA R+PGRTDNEIKN+WN+ ++K+L        T  P
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP 139

Length = 249

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 65.6 bits (161), Expect = 3e-14
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)

Query: 76  RGAFSPQEEELIIHLHSLLGNR-WSQIAARLPGRTDNEIKNFWNSTI 121
           RG ++P+E+EL+I      GN  WS+IA  LPGRTDN+ KN WN+ +
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 61.4 bits (150), Expect = 1e-12
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70
          +G W+PEED+ L+  + K+G G WS +A++    R    C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPG-RTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 1/119 (0%)

Query: 18  GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRG 77
             K + G W   ED+ L   + K G   WS VA        GK    RW N+L P LK+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLIS-STGKQSSNRWNNHLNPQLKKK 73

Query: 78  AFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPS 136
            +S +E+E +I L   LG +WS IA     RT  +    + +T++       S     +
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRN 132

Length = 512

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 59.5 bits (145), Expect = 6e-12
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 76  RGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKK 123
           +G ++ +E+EL+I L    G N W +IA  LPGRT  + +  W + +K 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEE 85
          W+ EED+KL+  + K G   W  +A    L R   +CR RW   LRP   RG ++ +E++
Sbjct: 1  WTEEEDEKLLKLVEKYGND-WKQIA--EELGRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 78  AFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWN 118
            ++ +E+EL++      G N W +IA  LPGRT  + +  W 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP 72
          KG W+ EED+ L+  + K G+  W  +A+     R  + CR RW N L+P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPG-RTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70
          W+ EED+ L+  + K G+  W  +A+     R  K CR RW N L
Sbjct: 2  WTEEEDELLLEAVKKYGKNNWEKIAKELPG-RTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 43.1 bits (102), Expect = 4e-06
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 79  FSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127
           ++ +E+E ++ L    GN W QIA  L GRT +  ++ W   ++ +   
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212557 cd11659, SANT_CDC5_II, SANT/myb-like DNA-binding domain of Cell Division Cycle 5-Like Protein repeat II

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 72  PDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDN 111
           P +K+  ++ +E+E ++HL  LL  +W  I A + GRT  
Sbjct: 1   PSIKKTEWTREEDEKLLHLAKLLPTQWRTI-APIVGRTAQ 39

In humans, cell division cycle 5-like protein (CDC5) functions in pre-mRNA splicing in cell cycle control. The DNA-binding, myb-like domain of CDC5 is a member of the SANT/myb group. SANT is named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. The SANT domain resembles the 3 alpha-helix bundle of DNA-binding Myb domains and is found in a diverse set of proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.78
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.71
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.63
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.56
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.5
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.4
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.38
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.36
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.24
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.24
PLN03212	249	Transcription repressor MYB5; Provisional	99.12
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.11
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.07
PLN03091	459	hypothetical protein; Provisional	98.94
KOG0048	238	consensus Transcription factor, Myb superfamily [T	98.93
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.92
KOG0051	607	consensus RNA polymerase I termination factor, Myb	98.87
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.18
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.84
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.69
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.62
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.6
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.45
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.24
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.17
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.13
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.07
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.05
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.03
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.85
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.5
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	96.12
PRK13923	170	putative spore coat protein regulator protein YlbO	95.89
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	95.87
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	95.87
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.38
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.25
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	95.23
KOG2656	445	consensus DNA methyltransferase 1-associated prote	94.84
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	94.8
KOG4282	345	consensus Transcription factor GT-2 and related pr	94.11
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	94.03
PRK13923	170	putative spore coat protein regulator protein YlbO	93.9
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.4
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.84
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	88.69
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	87.47
KOG1194	534	consensus Predicted DNA-binding protein, contains	86.97
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	83.78

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=3.2e-34  Score=265.16  Aligned_cols=111  Identities=59%  Similarity=1.031  Sum_probs=107.0

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCh
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRW   98 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW   98 (316)
                      +.+.||+||+|||++|+++|++||.++|..||+.++++|++++||.||.|||+|+++++.||+|||++|++||.+||++|
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            44568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164           99 SQIAARLPGRTDNEIKNFWNSTIKKRLKNLS  129 (316)
Q Consensus        99 ~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~  129 (316)
                      +.||++|||||+++|||+|+..+||++.+..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999988765

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.2e-34  Score=266.07  Aligned_cols=121  Identities=52%  Similarity=1.064  Sum_probs=111.9

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164           17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN   96 (316)
Q Consensus        17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~   96 (316)
                      .++.+++++||+|||++|+++|++||..+|..||+.++++|+++|||+||.++|+|.+++++||+|||++|++++.+||+
T Consensus        19 ~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~Gn   98 (249)
T PLN03212         19 TKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGN   98 (249)
T ss_pred             ccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhccc
Confidence            46789999999999999999999999989999999986699999999999999999999999999999999999999999


Q ss_pred             ChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCCCCCCCCC
Q 021164           97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSP  137 (316)
Q Consensus        97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~s~s~~sp  137 (316)
                      +|+.||++|||||+++|||||+.++++++++.........+
T Consensus        99 KWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~kp  139 (249)
T PLN03212         99 RWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKP  139 (249)
T ss_pred             cHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCCC
Confidence            99999999999999999999999999988876555444443

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=5e-33  Score=273.57  Aligned_cols=117  Identities=71%  Similarity=1.262  Sum_probs=110.0

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164           17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN   96 (316)
Q Consensus        17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~   96 (316)
                      .+.+++|++||+|||++|+++|.+||..+|..||+.++++|+++|||+||.+||+|.+++++||+|||++|++++++||+
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            46789999999999999999999999999999999887799999999999999999999999999999999999999999


Q ss_pred             ChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCCCCC
Q 021164           97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSS  133 (316)
Q Consensus        97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~s~s  133 (316)
                      +|.+||++|||||+++|||||+.++||+++.......
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~  124 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPN  124 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999998876555443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.78  E-value=1.7e-19  Score=183.84  Aligned_cols=111  Identities=23%  Similarity=0.425  Sum_probs=100.6

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG   95 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G   95 (316)
                      ...|.+++|+||++||.+|+.+|.+||.+.|.+|-+.+| +|+..|||+||+|.|+..++++.||-.||+.|+.+|++||
T Consensus       353 ~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG  431 (939)
T KOG0049|consen  353 TLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYG  431 (939)
T ss_pred             ccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHc
Confidence            457899999999999999999999999999999999998 9999999999999999999999999999999999999999


Q ss_pred             -CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           96 -NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        96 -~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                       ++|.+||..||+||..|...|=..+++.++..
T Consensus       432 ~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k~rl  464 (939)
T KOG0049|consen  432 KGNWAKCAMLLPKKTSRQLRRRRLRLIAAKLRL  464 (939)
T ss_pred             cchHHHHHHHccccchhHHHHHHHHHHHHHHHH
Confidence             78999999999999977666555555544443

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.71  E-value=9.1e-18  Score=171.28  Aligned_cols=112  Identities=26%  Similarity=0.472  Sum_probs=97.1

Q ss_pred             CCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc---------------------------
Q 021164           15 NSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI---------------------------   67 (316)
Q Consensus        15 n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~---------------------------   67 (316)
                      |+..|+++|.-|++|||++|..+...++..+|.+||..++..|+.-||.+|++                           
T Consensus       245 n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~kL~alV~~~~  324 (939)
T KOG0049|consen  245 NELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDTKLIALVKITS  324 (939)
T ss_pred             hhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhHHHHHHHHHhh
Confidence            57789999999999999999999888887778888877763366666655544                           


Q ss_pred             ---------------------------ccccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHH
Q 021164           68 ---------------------------NYLRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNS  119 (316)
Q Consensus        68 ---------------------------n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~  119 (316)
                                                 ..|+|.+++|+||.+||.+|+.+|.+||. .|.+|...+|||++.|||.||..
T Consensus       325 ~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~n  404 (939)
T KOG0049|consen  325 INSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTN  404 (939)
T ss_pred             ccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHH
Confidence                                       66899999999999999999999999995 59999999999999999999999


Q ss_pred             HhHhhhh
Q 021164          120 TIKKRLK  126 (316)
Q Consensus       120 llrk~~k  126 (316)
                      .|.+..|
T Consensus       405 vL~~s~K  411 (939)
T KOG0049|consen  405 VLNRSAK  411 (939)
T ss_pred             HHHHhhc
Confidence            8876555

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.63  E-value=1.4e-16  Score=117.24  Aligned_cols=60  Identities=38%  Similarity=0.845  Sum_probs=55.1

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHH
Q 021164           26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELI   87 (316)
Q Consensus        26 WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~L   87 (316)
                      ||+|||++|+.+|.+||. +|..||+.|+ .|++.||+.||.++|.|.+++++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999995 5999999997 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.56  E-value=2.9e-15  Score=151.84  Aligned_cols=109  Identities=32%  Similarity=0.487  Sum_probs=104.3

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164           17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN   96 (316)
Q Consensus        17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~   96 (316)
                      ...+++.|.|+..||+.|..+|+++|..+|+.||..+. -|+++||+.||.++++|.+++..|+.|||+.|+.+..++|.
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~   92 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT   92 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc
Confidence            56678889999999999999999999999999999998 69999999999999999999999999999999999999999


Q ss_pred             ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           97 RWSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        97 kW~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      +|+.||..+++||..+|.+||..++....+
T Consensus        93 ~wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          93 QWSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            999999999999999999999999887666

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=8.3e-15  Score=146.90  Aligned_cols=107  Identities=27%  Similarity=0.597  Sum_probs=100.8

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQ  100 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~  100 (316)
                      ++.|.|+--||+.|..+|.+||...|+.||+.++ -.+++||+.||..+|+|.+++..|+.|||++||.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            5678999999999999999999989999999998 899999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164          101 IAARLPGRTDNEIKNFWNSTIKKRLKNLS  129 (316)
Q Consensus       101 IAk~lpgRT~~q~KnRW~~llrk~~kk~~  129 (316)
                      ||..+ |||.+||-.||..++-.......
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~~~  111 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSYHY  111 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhhhc
Confidence            99999 99999999999999977665443

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.40  E-value=5.5e-14  Score=99.68  Aligned_cols=48  Identities=38%  Similarity=0.734  Sum_probs=43.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      |++||+|||++|+++|.+||..+|..||..|+.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999998889999999987999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.38  E-value=4.7e-13  Score=94.88  Aligned_cols=46  Identities=28%  Similarity=0.674  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC-hHHhhccCC-CCCHHHHHHHHHHHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNR-WSQIAARLP-GRTDNEIKNFWNSTI  121 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~k-W~~IAk~lp-gRT~~q~KnRW~~ll  121 (316)
                      +++||+|||++|++++.+||.. |..||..|| +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.36  E-value=4.7e-13  Score=137.36  Aligned_cols=102  Identities=25%  Similarity=0.588  Sum_probs=91.7

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC--CCCCCCCHHHHHHHHHHHH-------
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD--LKRGAFSPQEEELIIHLHS-------   92 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~--lkk~~WT~EED~~Llelv~-------   92 (316)
                      .+|.||+||++.|..++.++|.. |..|++.|+  |.+..||+||++|..+.  .++++||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~~-W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGND-WKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhccc-HHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999965 999999885  99999999999999887  5999999999999999995       


Q ss_pred             Hh-------------------CCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           93 LL-------------------GNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        93 ~~-------------------G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      ++                   +-.|..|++.+.+|+..|||.+|..++.+...
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~  512 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSF  512 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHh
Confidence            33                   12699999999999999999999999876543

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.24  E-value=8.5e-12  Score=91.66  Aligned_cols=45  Identities=31%  Similarity=0.689  Sum_probs=39.1

Q ss_pred             CCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           79 FSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        79 WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ||+|||++|+++|.+||.+|.+||++|+.||+.+|++||+..+++
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~   45 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRP   45 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTST
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcc
Confidence            999999999999999999999999999669999999999996653

...

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.24  E-value=1.5e-11  Score=84.26  Aligned_cols=47  Identities=40%  Similarity=0.853  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           76 RGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      +++||++||++|+.++.+|| .+|..||+.|++||+.+|++||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.12  E-value=7.7e-11  Score=109.97  Aligned_cols=68  Identities=19%  Similarity=0.451  Sum_probs=58.5

Q ss_pred             ccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccC-CCCCHHHHHHHHHHHhHhhhhc
Q 021164           52 NAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARL-PGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        52 ~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~l-pgRT~~q~KnRW~~llrk~~kk  127 (316)
                      .++ +|++.-|..       +.+++++||+|||++|+++|++|| .+|..||+.+ ++||+.|||.||...|+..+++
T Consensus         9 ~~~-~~~~pcc~K-------~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~k   78 (249)
T PLN03212          9 PVS-KKTTPCCTK-------MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKR   78 (249)
T ss_pred             CCC-CCCCCCccc-------CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhccc
Confidence            455 677665543       578999999999999999999999 5799999998 7999999999999999877665

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.11  E-value=1.5e-10  Score=78.21  Aligned_cols=43  Identities=33%  Similarity=0.736  Sum_probs=41.3

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHH
Q 021164           78 AFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        78 ~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      +||++|+++|++++.+|| .+|..||+.+++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            699999999999999999 8999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.07  E-value=5.3e-11  Score=81.50  Aligned_cols=48  Identities=38%  Similarity=0.808  Sum_probs=44.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      +++||++||++|+.++.+||..+|..||..++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            46899999999999999999667999999998 9999999999998764

>PLN03091 hypothetical protein; Provisional

Probab=98.94  E-value=6.8e-10  Score=110.71  Aligned_cols=56  Identities=23%  Similarity=0.520  Sum_probs=50.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccC-CCCCHHHHHHHHHHHhHhhhh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARL-PGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~l-pgRT~~q~KnRW~~llrk~~k  126 (316)
                      ++.+++++||+|||++|+++|++||. +|..||+.+ ++||+.|||.||...|+..++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~Ik   66 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLK   66 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCccc
Confidence            46799999999999999999999994 799999988 699999999999988876554

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=98.93  E-value=7.5e-10  Score=102.84  Aligned_cols=57  Identities=18%  Similarity=0.313  Sum_probs=51.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCC-CCCHHHHHHHHHHHhHhhhhcc
Q 021164           72 PDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLP-GRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        72 p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lp-gRT~~q~KnRW~~llrk~~kk~  128 (316)
                      +.+.+||||+|||++|+++|++||. +|..||+.++ +|++.+||-||..+|+..+++.
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg   63 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRG   63 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCC
Confidence            4455899999999999999999995 6999999998 9999999999999999888753

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.92  E-value=3.9e-10  Score=76.20  Aligned_cols=45  Identities=38%  Similarity=0.762  Sum_probs=41.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      +||++||++|+.++.++|..+|..||+.++ +|++.||+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999777999999998 899999999998753

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=98.87  E-value=2.5e-09  Score=110.32  Aligned_cols=105  Identities=27%  Similarity=0.365  Sum_probs=88.2

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhC-----------------------CCCccccccccccccccccccccccccccCCC-C
Q 021164           20 KLRKGLWSPEEDDKLMNYMLKNG-----------------------QGCWSDVARNAGLQRCGKSCRLRWINYLRPDL-K   75 (316)
Q Consensus        20 ~lkKg~WT~EEDe~L~~lV~kyG-----------------------~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l-k   75 (316)
                      -++-+.|+.+||+.|.+.|..|-                       .+.|..|...+| .|+...++..-++...|-- +
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~~  383 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFENK  383 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCccccc
Confidence            45668999999999999998872                       113677778888 6999998875445545444 9


Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      +|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++...+
T Consensus       384 rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~  433 (607)
T KOG0051|consen  384 RGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSK  433 (607)
T ss_pred             cCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccc
Confidence            999999999999999999999999999999 99999999999999876653

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.18  E-value=6.9e-07  Score=91.42  Aligned_cols=106  Identities=20%  Similarity=0.193  Sum_probs=90.6

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHH
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSL   93 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~   93 (316)
                      .+...+.++++.|+.|||++|+.+-.++|.. |..||..++ +|+..||.+||.+.|.+..+ .+|+..++...+..+..
T Consensus        63 ~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d-~rt~~~~~ery~~~~~~~~s-~~~s~~~~~~~f~k~d~  139 (512)
T COG5147          63 NNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKD-RRTAQQCVERYVNTLEDLSS-THDSKLQRRNEFDKIDP  139 (512)
T ss_pred             hhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccC-ccchHHHHHHHHHHhhhhhc-cccccccchhhccccCc
Confidence            4677899999999999999999999999988 999999998 99999999999999987766 89999999888888888


Q ss_pred             hCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           94 LGNRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        94 ~G~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      |+..|.++....-.+-...+.|++..+..
T Consensus       140 f~~~~~~~~~~~~~~~~~~~~N~~~~~~~  168 (512)
T COG5147         140 FNENSARRPDIYEDELLEREVNREASYRL  168 (512)
T ss_pred             hhhhhhhhhhhhhcccchhhhhHHHHHHH
Confidence            88888877766656666666666654443

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.84  E-value=8.2e-06  Score=60.65  Aligned_cols=49  Identities=12%  Similarity=0.270  Sum_probs=43.2

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCc---ccccccccccc-ccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCW---SDVARNAGLQR-CGKSCRLRWINYL   70 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW---~~IA~~l~~gR-t~kQCr~RW~n~L   70 (316)
                      ++-.||+||.++++++|+.+|.++|   ..|++.|...| |..||+.+++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3567999999999999999998889   99999887567 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.69  E-value=9.6e-05  Score=54.94  Aligned_cols=46  Identities=13%  Similarity=0.274  Sum_probs=40.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-Ch---HHhhccCC-CC-CHHHHHHHHHHHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGN-RW---SQIAARLP-GR-TDNEIKNFWNSTI  121 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~-kW---~~IAk~lp-gR-T~~q~KnRW~~ll  121 (316)
                      +-.||+||..+++++++.+|. +|   ..|++.+. .| |..||+.++..+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            558999999999999999996 99   99999873 45 9999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.62  E-value=2.1e-05  Score=78.77  Aligned_cols=51  Identities=20%  Similarity=0.495  Sum_probs=46.8

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      -++-..-||.+|+-+|++++..||.+||..||.+++ +|+..+|+++|.+++
T Consensus        68 ~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   68 FPILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            445567899999999999999999999999999999 999999999998864

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.60  E-value=0.00015  Score=66.46  Aligned_cols=100  Identities=22%  Similarity=0.370  Sum_probs=72.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccc--cccccccccccccccc-cCCC--------------------CCCCCCH
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAG--LQRCGKSCRLRWINYL-RPDL--------------------KRGAFSP   81 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~--~gRt~kQCr~RW~n~L-~p~l--------------------kk~~WT~   81 (316)
                      +|++++|-+|+.+|..-.  +-..|+.-+.  ..-|.+.+.+||+..| +|.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999998765  2455554332  2346677889999765 4433                    4579999


Q ss_pred             HHHHHHHHHHHHhCC---ChHHhhc----cC-CCCCHHHHHHHHHHHhHhhhh
Q 021164           82 QEEELIIHLHSLLGN---RWSQIAA----RL-PGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        82 EED~~Llelv~~~G~---kW~~IAk----~l-pgRT~~q~KnRW~~llrk~~k  126 (316)
                      +|+++|.........   .+.+|=.    .| ++||+.++.++|..+.+..+-
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL  131 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLL  131 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchh
Confidence            999999998766543   4666632    24 889999999999966555543

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.45  E-value=0.0002  Score=71.85  Aligned_cols=49  Identities=20%  Similarity=0.418  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHh
Q 021164           73 DLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTI  121 (316)
Q Consensus        73 ~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~ll  121 (316)
                      .+-...||.+|+.+||++++.|| ++|..||+++..||..+||.+|....
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            45567899999999999999999 99999999999999999999997655

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.24  E-value=0.00031  Score=54.74  Aligned_cols=53  Identities=30%  Similarity=0.473  Sum_probs=37.7

Q ss_pred             CCCCCHHHHHHHHHHHHH------hC--C------ChHHhhccC----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164           76 RGAFSPQEEELIIHLHSL------LG--N------RWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~------~G--~------kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      +..||.+|...||+++.+      ++  +      -|..||..|    ..||+.||++||+.|.++..+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k   71 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIK   71 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999987      21  1      499999876    46999999999999887665543

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.17  E-value=0.00047  Score=61.20  Aligned_cols=51  Identities=20%  Similarity=0.387  Sum_probs=45.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHh---CC----ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           75 KRGAFSPQEEELIIHLHSLL---GN----RWSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~---G~----kW~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      +...||.|||.+|.+.|-+|   |+    -...+++.| +||..+|-=||++.+|+.+.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~   60 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYE   60 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHH
Confidence            56799999999999999887   53    378889999 99999999999999998765

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.13  E-value=0.00054  Score=52.23  Aligned_cols=50  Identities=16%  Similarity=0.413  Sum_probs=33.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-hHHhhccCC-CCCHHHHHHHHHHHhHhhh
Q 021164           76 RGAFSPQEEELIIHLHSLL--------GNR-WSQIAARLP-GRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~--------G~k-W~~IAk~lp-gRT~~q~KnRW~~llrk~~  125 (316)
                      +.+||.|||..|++.|.++        |++ |.++++.-+ .+|-.+.|+||...|+.+.
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            5689999999999999765        233 999999877 8999999999987776554

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.07  E-value=0.00069  Score=69.78  Aligned_cols=48  Identities=15%  Similarity=0.297  Sum_probs=44.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI  121 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~ll  121 (316)
                      ..+..||++|..+||++++.||.+|.+||.++.+||..||--||..+-
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP  298 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP  298 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence            346789999999999999999999999999999999999999997654

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.05  E-value=0.00044  Score=70.80  Aligned_cols=54  Identities=28%  Similarity=0.510  Sum_probs=49.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      ++.+.|+.-||+.|-.+|.+|| +.|+.|++.++-.|..||++||...+...+++
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~   59 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKK   59 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhh
Confidence            5678999999999999999999 56999999999999999999999888776654

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.03  E-value=0.00062  Score=69.02  Aligned_cols=45  Identities=18%  Similarity=0.306  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      ...||.+|..+|++.++.||..|.+||+++.+||..||--||.++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            358999999999999999999999999999999999999999765

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.85  E-value=0.00038  Score=70.48  Aligned_cols=46  Identities=28%  Similarity=0.558  Sum_probs=42.8

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY   69 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~   69 (316)
                      +...||.+|..+|+++|+.||.. |.+||++++ +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDd-W~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDD-WDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhh-HHHHHHHhC-CCCHHHHHHHHHcC
Confidence            56789999999999999999976 999999999 99999999999874

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.50  E-value=0.0011  Score=68.20  Aligned_cols=47  Identities=21%  Similarity=0.529  Sum_probs=42.8

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY   69 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~   69 (316)
                      ..+..||.+|..+|+++|+.||.. |.+||.+++ +|+..||..++.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~dd-W~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGDD-WNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhccc-HHHHHhccC-CCCHHHHHHHHHhc
Confidence            346779999999999999999976 999999999 99999999998864

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=96.12  E-value=0.01  Score=45.50  Aligned_cols=52  Identities=27%  Similarity=0.487  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHh-----C------------CChHHhhccC-----CCCCHHHHHHHHHHHhHhhhhc
Q 021164           76 RGAFSPQEEELIIHLHSLL-----G------------NRWSQIAARL-----PGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~-----G------------~kW~~IAk~l-----pgRT~~q~KnRW~~llrk~~kk  127 (316)
                      +..||.+|.+.|++++.+|     |            .-|.+|+..|     +.||..++|.+|..+.....++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4579999999999999987     2            1499999865     3599999999999887765443

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.89  E-value=0.0084  Score=53.86  Aligned_cols=51  Identities=18%  Similarity=0.338  Sum_probs=42.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC----C---hHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGN----R---WSQIAARLPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~----k---W~~IAk~lpgRT~~q~KnRW~~llrk~~  125 (316)
                      .++..||.|||.+|.+.|-+|+.    +   ...++..| +||..+|.-||++.+|+.+
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y   60 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY   60 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence            35679999999999999988863    2   45566777 9999999999999998654

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=95.87  E-value=0.0026  Score=48.56  Aligned_cols=52  Identities=21%  Similarity=0.419  Sum_probs=32.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhC--------CCCccccccccccccccccccccccccccCCC
Q 021164           23 KGLWSPEEDDKLMNYMLKNG--------QGCWSDVARNAGLQRCGKSCRLRWINYLRPDL   74 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG--------~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l   74 (316)
                      +.+||.|||+.|+..|.++.        ..=|..+|+.-+..+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            46899999999999997653        22399999876645666677999999887653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=95.87  E-value=0.0022  Score=49.91  Aligned_cols=47  Identities=28%  Similarity=0.639  Sum_probs=32.5

Q ss_pred             cCCCHHHHHHHHHHHHHh------C---C----CCcccccccc---ccccccccccccccccc
Q 021164           24 GLWSPEEDDKLMNYMLKN------G---Q----GCWSDVARNA---GLQRCGKSCRLRWINYL   70 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~ky------G---~----~nW~~IA~~l---~~gRt~kQCr~RW~n~L   70 (316)
                      ..||.+|...|++++...      +   .    .-|..||..|   +..|++.||+.||.+..
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            479999999999998771      1   1    1399999876   45799999999998753

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.38  E-value=0.0041  Score=47.71  Aligned_cols=49  Identities=27%  Similarity=0.439  Sum_probs=39.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhC----------------CCCcccccccc----ccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNG----------------QGCWSDVARNA----GLQRCGKSCRLRWINYL   70 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG----------------~~nW~~IA~~l----~~gRt~kQCr~RW~n~L   70 (316)
                      ++..||++|.+.|+++|.+|.                ...|..||..+    +..|+..|++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            456799999999999999973                12499999866    23699999999998764

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.25  E-value=0.0052  Score=60.07  Aligned_cols=50  Identities=20%  Similarity=0.467  Sum_probs=45.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      +----|+..|+.+|+++....|.+||..||..++ .|+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3445699999999999999999999999999999 9999999999998765

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=95.23  E-value=0.006  Score=54.23  Aligned_cols=49  Identities=31%  Similarity=0.653  Sum_probs=41.5

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC------CCcccccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQ------GCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~------~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      .++..||.|||.+|.+.|.+|-.      .....|++.+.  ||+.-|.=||.-++.
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VR   56 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVR   56 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHH
Confidence            46788999999999999998832      24788888875  999999999998876

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=94.84  E-value=0.03  Score=56.02  Aligned_cols=86  Identities=23%  Similarity=0.317  Sum_probs=66.7

Q ss_pred             CccccccccccccccccccccccccccCC-------------------------CCCCCCCHHHHHHHHHHHHHhCCChH
Q 021164           45 CWSDVARNAGLQRCGKSCRLRWINYLRPD-------------------------LKRGAFSPQEEELIIHLHSLLGNRWS   99 (316)
Q Consensus        45 nW~~IA~~l~~gRt~kQCr~RW~n~L~p~-------------------------lkk~~WT~EED~~Llelv~~~G~kW~   99 (316)
                      .|.-+.=..+ -|...-...+|.+.-++.                         ++...||.+|-+.|+++.+.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4766654443 676766777777663321                         23457999999999999999999999


Q ss_pred             Hhhcc-----CCC-CCHHHHHHHHHHHhHhhhhccCCC
Q 021164          100 QIAAR-----LPG-RTDNEIKNFWNSTIKKRLKNLSSS  131 (316)
Q Consensus       100 ~IAk~-----lpg-RT~~q~KnRW~~llrk~~kk~~~s  131 (316)
                      .||.+     ++. ||-..+|.||..+.++..+....+
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99987     655 999999999999999888765444

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=94.80  E-value=0.04  Score=54.09  Aligned_cols=49  Identities=27%  Similarity=0.474  Sum_probs=43.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      +--..|+.+|+.+|+++...+| ++|..||.++..|+...||.+|..+.-
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            3445799999999999999999 899999999988999999999976543

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=94.11  E-value=0.12  Score=50.40  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=45.1

Q ss_pred             CCCCCHHHHHHHHHHHHHh----------CCChHHhhccC----CCCCHHHHHHHHHHHhHhhhhccCCC
Q 021164           76 RGAFSPQEEELIIHLHSLL----------GNRWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNLSSS  131 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~----------G~kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~~~s  131 (316)
                      ...|+.+|-..||++..+.          +..|..||+.+    .-||+.+||+||..+.++..+.+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~  123 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKK  123 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhccc
Confidence            4789999999999999764          34599999954    45999999999999988776654443

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=94.03  E-value=0.09  Score=58.74  Aligned_cols=98  Identities=15%  Similarity=0.303  Sum_probs=74.4

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccccccccccccc-------cccc------c-----------------------
Q 021164           26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRL-------RWIN------Y-----------------------   69 (316)
Q Consensus        26 WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~-------RW~n------~-----------------------   69 (316)
                      ||..+=..++.+..+||..+-..||..|. +++...++.       ||..      |                       
T Consensus       827 w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~  905 (1033)
T PLN03142        827 WSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK  905 (1033)
T ss_pred             ccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777788889999888899999997 788777653       2211      0                       


Q ss_pred             -------------c-cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhcc------------CCCCCHHHHHHHHHHHhH
Q 021164           70 -------------L-RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAAR------------LPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        70 -------------L-~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~------------lpgRT~~q~KnRW~~llr  122 (316)
                                   + -+..++..+|+|||..|+-.+.+|| .+|..|-..            |..||+..|..|-..|++
T Consensus       906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~  985 (1033)
T PLN03142        906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR  985 (1033)
T ss_pred             HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence                         0 0223456799999999999999999 779998332            257999999999998887


Q ss_pred             hh
Q 021164          123 KR  124 (316)
Q Consensus       123 k~  124 (316)
                      -.
T Consensus       986 ~~  987 (1033)
T PLN03142        986 LI  987 (1033)
T ss_pred             HH
Confidence            54

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=93.90  E-value=0.014  Score=52.45  Aligned_cols=50  Identities=26%  Similarity=0.593  Sum_probs=39.2

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCC------Ccccccccccccccccccccccccccc
Q 021164           20 KLRKGLWSPEEDDKLMNYMLKNGQG------CWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        20 ~lkKg~WT~EEDe~L~~lV~kyG~~------nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      +.++..||.|||.+|.+.|.+|+..      ....++..+  .|++.+|..||.-++.
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr   57 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR   57 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence            4577899999999999999888642      245555665  5999999999976655

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.40  E-value=0.32  Score=38.17  Aligned_cols=47  Identities=28%  Similarity=0.593  Sum_probs=36.9

Q ss_pred             CCCHHHHHHHHHHHHHh---CC----------ChHHhhccC---CC--CCHHHHHHHHHHHhHhh
Q 021164           78 AFSPQEEELIIHLHSLL---GN----------RWSQIAARL---PG--RTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        78 ~WT~EED~~Llelv~~~---G~----------kW~~IAk~l---pg--RT~~q~KnRW~~llrk~  124 (316)
                      .||+++++.|++++.+.   |+          .|..|++.|   +|  .|..||++||..+.+..
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHH
Confidence            49999999999998653   21          399998876   33  57899999998887754

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.84  E-value=0.24  Score=49.71  Aligned_cols=47  Identities=26%  Similarity=0.294  Sum_probs=43.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      .+||.+|-++...+...+|..+..||..||.|...|||.+|..--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999765554

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=88.69  E-value=0.62  Score=39.52  Aligned_cols=54  Identities=24%  Similarity=0.420  Sum_probs=41.7

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----ChHHhhcc------------CCCCCHHHHHHHHHHHhHhhhh
Q 021164           73 DLKRGAFSPQEEELIIHLHSLLGN----RWSQIAAR------------LPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        73 ~lkk~~WT~EED~~Llelv~~~G~----kW~~IAk~------------lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      ..++..||++||..|+-++.+||-    .|..|...            |..||+..|..|=..|++--.+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            566789999999999999999995    79888553            2459999999999988875443

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=87.47  E-value=1.2  Score=31.35  Aligned_cols=42  Identities=26%  Similarity=0.405  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           81 PQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        81 ~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ++++..++.++...|-.|.+||+.+ |.|...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4678888899888999999999999 99999999988776654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=86.97  E-value=1.7  Score=44.71  Aligned_cols=48  Identities=17%  Similarity=0.329  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ...||.||--++-+++..||++..+|-+.||.|+-..+...|....+.
T Consensus       187 ~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~  234 (534)
T KOG1194|consen  187 PDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKT  234 (534)
T ss_pred             cccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999888766543

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=83.78  E-value=0.67  Score=46.64  Aligned_cols=66  Identities=21%  Similarity=0.285  Sum_probs=50.8

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc--ccCC-----C-CCCCCCHHHHHH
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY--LRPD-----L-KRGAFSPQEEEL   86 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~--L~p~-----l-kk~~WT~EED~~   86 (316)
                      .+..--+||.+|-+++.++....|.. +..||..+| +|..+|++.+|.+-  .+|.     + .+.|+..+|-..
T Consensus       361 ~~~~~~~Ws~~e~ekFYKALs~wGtd-F~LIs~lfP-~R~RkqIKaKfi~Eek~nP~rIn~aL~~kkp~d~~eY~k  434 (507)
T COG5118         361 KKKGALRWSKKEIEKFYKALSIWGTD-FSLISSLFP-NRERKQIKAKFIKEEKVNPERINEALNEKKPFDQVEYNK  434 (507)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHhcch-HHHHHHhcC-chhHHHHHHHHHHHhhhCHHHHHHHHhccCCCCHHHHhh
Confidence            33445679999999999999999986 999999998 99999999998763  2332     1 245666666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		9e-20
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		3e-19
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		2e-18
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		3e-18
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		4e-18
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-14
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		6e-08
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		9e-08
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		7e-07
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		1e-06
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		5e-05
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		1e-04
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		1e-04

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score = 94.0 bits (232), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           L KG W+ EED +++ ++ K G   WSD+A++    R GK CR RW N+L P++K+ +++
Sbjct: 25  LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 83
Query: 81  PQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
            +            GNRW++IA  LPGRTDN +KN WNST+++++
Sbjct: 84  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/105 (41%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           L KG W+ EED K++  + K G   W+ +A++    R GK CR RW N+L P++K+ +++
Sbjct: 5   LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLK-GRLGKQCRERWHNHLNPEVKKSSWT 63
Query: 81  PQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
            +            GNRW++IA  LPGRTDN +KN WNSTIK+++
Sbjct: 64  EEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/106 (40%), Positives = 67/106 (63%), Gaps = 1/106 (0%)
Query: 20  KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
           +L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 59
Query: 80  SPQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           + +            GNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P++K+ +++
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 81  PQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
            +            GNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P++K+ +++
Sbjct: 56  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWT 114
Query: 81  PQXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
            +            GNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 115 EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG ++  EDD +  Y+ +NG   W  +  +    R  K CR RW N+L P + + A++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 83  XXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
                       G++WS IA  +PGRTDN IKN WNS+I KR+
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 22  RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSP 81
           +K  ++PEED+ L   + ++G   W  +A      R  + CR RW NYL P +    ++ 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 82  QXXXXXXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           +            G +W+ IA   PGRTD  IKN W  TI  +L
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW-VTISNKL 110

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 27  SPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQXXXX 86
           + EED KL   +++ G   W  +++   + R  + CR RW NY+ P L+   +SP+    
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQ-LMITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 87  XXXXXXXXGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127
                   G +W++I+  L  R+DN I+N W    + R K+
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 95  GNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           GNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 22  GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/31 (64%), Positives = 27/31 (87%)
Query: 95  GNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           GNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 24  GNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L KG W+ EED +L+  + K G   WS +A++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-68
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	1e-67
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-66
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-56
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-32
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	4e-56
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	1e-53
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	9e-25
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	6e-05
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-05
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	9e-20
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	1e-06
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	9e-15
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	2e-05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	1e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	2e-09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	4e-09
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	6e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	7e-08
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	1e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	7e-07
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	7e-07
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	2e-06
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-06
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	2e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-06
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	4e-04
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	2e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	6e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  209 bits (533), Expect = 2e-68
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           KG ++  EDD +  Y+ +NG   W  +       R  K CR RW N+L P + + A++P+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSSTPSPNASDS 142
           E+E I   +  LG++WS IA  +PGRTDN IKN WNS+I KR+   S+      P+ S  
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 143 LISSDQPNK 151
             ++D P K
Sbjct: 121 RKAADVPKK 129

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  205 bits (525), Expect = 1e-67
 Identities = 47/106 (44%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 20  KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
           +L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P++K+ ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 80  SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           + +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  202 bits (517), Expect = 4e-66
 Identities = 47/106 (44%), Positives = 75/106 (70%), Gaps = 1/106 (0%)

Query: 20  KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
           +L KG W+ EED +++ ++ K G   WSD+A++    R GK CR RW N+L P++K+ ++
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 80  SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           + +E+ +I   H  LGNRW++IA  LPGRTDN +KN WNST+++++
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  178 bits (454), Expect = 3e-56
 Identities = 47/106 (44%), Positives = 73/106 (68%), Gaps = 1/106 (0%)

Query: 20  KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF 79
           +L KG W+ EED +++  + K G   WS +A++    R GK CR RW N+L P++K+ ++
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113

Query: 80  SPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           + +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST+++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  116 bits (294), Expect = 2e-32
 Identities = 36/109 (33%), Positives = 53/109 (48%), Gaps = 6/109 (5%)

Query: 21  LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFS 80
           L K  W+ EED+KL   + +NG   W  +A      R    C+ RW   L P+L +G ++
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 81  PQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFW----NSTIKKR 124
            +E++ +I L    G  RWS IA  L GR   + +  W    N  +KK 
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  177 bits (450), Expect = 4e-56
 Identities = 35/110 (31%), Positives = 54/110 (49%), Gaps = 2/110 (1%)

Query: 17  NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKR 76
           N    +K  ++PEED+ L   + ++G   W  +A      R  + CR RW NYL P +  
Sbjct: 5   NLKAAKKQKFTPEEDEMLKRAVAQHGSD-WKMIAATFP-NRNARQCRDRWKNYLAPSISH 62

Query: 77  GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
             ++ +E+ L++      G +W+ IA   PGRTD  IKN W +   K   
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGI 112

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  170 bits (432), Expect = 1e-53
 Identities = 34/108 (31%), Positives = 59/108 (54%), Gaps = 1/108 (0%)

Query: 23  KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQ 82
           K  ++ EED KL   +++ G   W  +++     R  + CR RW NY+ P L+   +SP+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 83  EEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSS 130
           E+ L+   ++  G +W++I+  L  R+DN I+N W    + R K+  S
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQKS 107

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 93.4 bits (233), Expect = 9e-25
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L KG W+ EED +L+  + K G   WS +A++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 39.0 bits (92), Expect = 6e-05
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 74  LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRT 109
           L +G ++ +E++ +I L    G  RWS IA  L GR 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRI 37

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 92.0 bits (229), Expect = 6e-24
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK 75
          S+G+  + G+W   ED+ L   ++K G+  WS +A     ++  K C+ RW  +L P +K
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIK 60

Query: 76 RGAFSPQEE 84
          +  +S    
Sbjct: 61 KTEWSGPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 71  RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTD 110
               K G +   E+E++       G N+WS+IA+ L  ++ 
Sbjct: 4   GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 80.3 bits (199), Expect = 9e-20
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L K  W+ EED+KL   + +NG   W  +A      R    C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 44.1 bits (105), Expect = 1e-06
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 74  LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTD 110
           L +  ++ +E+E +  L    G + W  IA  LP RTD
Sbjct: 1   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTD 38

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 66.9 bits (164), Expect = 9e-15
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK 75
          +     K  W+ EED++L   + + GQ  W  +A +    R  + C+ RW+  L     
Sbjct: 2  SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 71  RPDLKRGAFSPQEEELIIHLHSLLGNR-WSQIAARLPGRTD 110
                +  ++ +E+E +  L    G + W  +A+  P RTD
Sbjct: 3   SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 53.7 bits (129), Expect = 5e-10
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK 75
          S+G+  +K  WS EE++KL++ + K     W  +A   G  R    C   +   L    +
Sbjct: 2  SSGSSGKKTEWSREEEEKLLH-LAKLMPTQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQ 58

Query: 76 RGA 78
          R +
Sbjct: 59 RDS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 74  LKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSSSSS 133
            K+  +S +EEE ++HL  L+  +W  I A + GRT  +    +   + K  +  S  SS
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTI-APIIGRTAAQCLEHYEFLLDKAAQRDSGPSS 65

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 53.5 bits (128), Expect = 2e-09
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 12  SHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ---RCGKSCRLRWIN 68
           SH   +  +  +  +S  E + L+  + K G G W DV   A      R     + +W  
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61

Query: 69  YLR-----PDLKRGAFSPQE-EELIIHLHSLLGNRWSQIAAR 104
            +      P  +RG   PQE    +++ H     +  Q   +
Sbjct: 62  LVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQQ 103

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLR 71
          ++  W  EED  L + + K G+G WS +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 36.5 bits (85), Expect = 6e-04
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 75  KRGAFSPQEEELIIHLHSLLGN-RWSQIAARLP--GRTDNEIKNFWNSTIKKR 124
           KR A+  +E++ +       G   WS+I        RT   +K+ W +  K +
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 47.8 bits (114), Expect = 7e-08
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLRP 72
           +S  N  +K  W+ EE + +   + K G+G W+ +++N     R     + RW    R 
Sbjct: 2  EDSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRL 61

Query: 73 DL 74
           +
Sbjct: 62 GM 63

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 20/98 (20%), Positives = 34/98 (34%), Gaps = 9/98 (9%)

Query: 11  NSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNA---GLQRCGKSCRLRWI 67
            S     G +  +  ++  E + L+  +   G G W DV   A      R     + +W 
Sbjct: 19  RSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWK 78

Query: 68  NYLR-----PDLKRGAFSPQEEEL-IIHLHSLLGNRWS 99
             +      P  +RGA  PQE    ++   +      S
Sbjct: 79  TLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 15/64 (23%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 63  RLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK 122
                +  R +L    ++ +E           G  WS IA  +  +T ++ KNF+ +  K
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNY-K 61

Query: 123 KRLK 126
           KR  
Sbjct: 62  KRQN 65

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLRP 72
          +       ++  W  EED  L + + K G+G WS +  +     R     + RW      
Sbjct: 1  TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT---- 56

Query: 73 DLKRGAFSPQEEE 85
           +K+      + E
Sbjct: 57 -MKKLKLISSDSE 68

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL 70
           +        W+ +E+  L+  ++  G G W DVA      +  + C   ++ Y 
Sbjct: 1  GSSGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 9/81 (11%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNA---GLQRCGKSCRLRWINYLR-----PDLKRG 77
          +S  E + L+  +   G G W DV   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 78 AFSPQEEEL-IIHLHSLLGNR 97
             PQ+    ++  H+    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 9   NGNSHSNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ---RCGKSCRLR 65
           N  S  +    +  +  +S  E + L+  +   G G W DV   A      R     + +
Sbjct: 3   NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDK 62

Query: 66  WINYLR-----PDLKRGAFSPQE-EELIIHLHSLLGNRWS 99
           W   +      P  +RG   PQ+  + ++  H+    +  
Sbjct: 63  WKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLRPDL 74
          +K  W+ EE + +   + K G+G W+ +++N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 75  KRGAFSPQEEELIIHLHSLLGN-RWSQIAARLP--GRTDNEIKNFWNSTIKKRL 125
           K+  ++ +E E +       G   W+ I+   P   RT   IK+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 25/54 (46%)

Query: 16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69
          S+G+      W  +E+  L++     G G W+D+A   G  R  + CR  ++  
Sbjct: 2  SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRG 77
           G ++PEE +KL    +K+G   W+ +    G  R   S + R    ++     G
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 75  KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFW 117
             G ++P+E E +  L    GN W+ I A L GR+ + +K+  
Sbjct: 22  HVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRC 63

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 72  PDLKRGAFSPQEEELIIHLHSLLGNR------WSQIAARLPGRTDNEIKNFWNSTIKKRL 125
           P   + +F+ +E+E I+ +      R      + +I+  +P  T N I++ +   + KRL
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 126 KNLSSSSSTPSPNASDSLISSDQPNK 151
           + +         +    L+  D  N 
Sbjct: 64  EYV------YEVDKFGKLVRDDDGNL 83

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 40.0 bits (92), Expect = 5e-04
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 22 RKGLWSPEEDDKLMNYMLKNGQG-----CWSDVARNAGLQRCGKSCRLRWINYLRPDLKR 76
           K  ++ EED+ +++ + KN         + +++        G S R R+  YL   L+ 
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEY 65

Query: 77 GAFSPQEEELI 87
               +  +L+
Sbjct: 66 VYEVDKFGKLV 76

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 8e-04
 Identities = 53/333 (15%), Positives = 95/333 (28%), Gaps = 132/333 (39%)

Query: 19  NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSC---------------- 62
            KLR+ L     + +    +L +G           G    GK+                 
Sbjct: 138 LKLRQAL----LELRPAKNVLIDGVL---------G---SGKTWVALDVCLSYKVQCKMD 181

Query: 63  -RLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWN-ST 120
            ++ W+N    +          E ++  L  L      QI      R+D+         +
Sbjct: 182 FKIFWLNLKNCN--------SPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 121 IKKRLKNLSSSSSTP----------SPNASDS--------LISSDQPNKDQLIAAAGS-- 160
           I+  L+ L  S              +  A ++        L +  +   D L AA  +  
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI 289

Query: 161 SSEFMSMPMYNNMDTSSSSSSMM---VHM-IDSLPMLEHGLNMMGCSSNGYMINTTSCIS 216
           S +  SM +     T     S++   +      LP      N                  
Sbjct: 290 SLDHHSMTL-----TPDEVKSLLLKYLDCRPQDLPREVLTTN------------------ 326

Query: 217 QVGMNNCGNFGGEFYVPPLESISCCIEENIKAENSFYDHRNPNNLNTNNN--NANNNKVD 274
                            P   +S  I E+I+           + L T +N  + N +K+ 
Sbjct: 327 -----------------PR-RLS-IIAESIR-----------DGLATWDNWKHVNCDKLT 356

Query: 275 QNIGGVGNLLQGEEIKLGEWDFEELMKDVSSFP 307
             I    N+L+  E +       ++   +S FP
Sbjct: 357 TIIESSLNVLEPAEYR-------KMFDRLSVFP 382

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.96
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.83
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.78
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.74
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.72
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.7
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.7
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.69
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.68
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.66
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.66
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.64
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.62
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.61
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.6
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.57
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.56
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.56
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.54
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.53
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.52
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.5
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.24
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.45
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.41
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.39
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.39
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.37
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.36
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.34
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.33
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.33
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.32
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.32
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.28
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	98.95
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.26
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.24
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.23
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.2
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.2
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	99.04
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.0
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.99
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.82
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.77
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.71
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.71
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.58
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.51
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.48
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.4
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.39
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.36
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.2
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.2
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.17
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.07
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.0
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	97.99
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.98
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.21
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.71
2crg_A	70	Metastasis associated protein MTA3; transcription	97.7
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.68
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.41
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.25
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.23
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	96.97
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	96.92
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.84
2crg_A	70	Metastasis associated protein MTA3; transcription	96.8
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.62
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.56
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.48
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.93
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.64
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	92.16
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.65
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.1
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	88.8

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=8.2e-35  Score=235.64  Aligned_cols=103  Identities=46%  Similarity=0.899  Sum_probs=99.1

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHH
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQ  100 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~  100 (316)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            6899999999999999999999988999999998 999999999999999999999999999999999999999999999


Q ss_pred             hhccCCCCCHHHHHHHHHHHhHhh
Q 021164          101 IAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus       101 IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ||++|||||+++||+||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=7.7e-35  Score=237.46  Aligned_cols=105  Identities=31%  Similarity=0.594  Sum_probs=101.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhh
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIA  102 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IA  102 (316)
                      ||+||+|||++|+++|.+||..+|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999888999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164          103 ARLPGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus       103 k~lpgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      ++|||||+++||+||+.++++..+..
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~~  105 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKHQ  105 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence            99999999999999999999876553

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=6.6e-34  Score=239.56  Aligned_cols=106  Identities=42%  Similarity=0.751  Sum_probs=102.3

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhh
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIA  102 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IA  102 (316)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCHHHHHHHHHHHhHhhhhccC
Q 021164          103 ARLPGRTDNEIKNFWNSTIKKRLKNLS  129 (316)
Q Consensus       103 k~lpgRT~~q~KnRW~~llrk~~kk~~  129 (316)
                      ++|||||+++||+||+.++++.+....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999998876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=8.1e-34  Score=237.77  Aligned_cols=107  Identities=33%  Similarity=0.614  Sum_probs=101.6

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG   95 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G   95 (316)
                      ..++..++|+||+|||++|+++|.+||. +|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+||
T Consensus         4 ~~~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            4 VNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             BC-CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            3467889999999999999999999998 7999999998 9999999999999999999999999999999999999999


Q ss_pred             CChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           96 NRWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        96 ~kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ++|..||+.|||||+++||+||+.++++.
T Consensus        82 ~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~  110 (126)
T 3osg_A           82 RQWAIIAKFFPGRTDIHIKNRWVTISNKL  110 (126)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999988764

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=6.4e-34  Score=238.36  Aligned_cols=109  Identities=43%  Similarity=0.864  Sum_probs=102.6

Q ss_pred             CCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 021164           15 NSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLL   94 (316)
Q Consensus        15 n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~   94 (316)
                      +...|.+++|+||+|||++|+++|.+||.++|..||..|+ +|+++||++||.++|+|.+++++||+|||++|+++|.+|
T Consensus        19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~   97 (128)
T 1h8a_C           19 KVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRL   97 (128)
T ss_dssp             ---CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHH
T ss_pred             HhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHH
Confidence            4467889999999999999999999999888999999998 999999999999999999999999999999999999999


Q ss_pred             CCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           95 GNRWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        95 G~kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      |++|+.||++|||||+++||+||+.+++++
T Consensus        98 G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           98 GNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             CSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             CcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=9.9e-32  Score=232.45  Aligned_cols=108  Identities=44%  Similarity=0.847  Sum_probs=103.3

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG   95 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G   95 (316)
                      ...|.+++++||+|||++|+++|.+||..+|..||..|+ +|++.||++||.++|+|.+++++||+|||++|++++.+||
T Consensus        51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           51 VLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             TTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            456788999999999999999999999878999999998 9999999999999999999999999999999999999999


Q ss_pred             CChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           96 NRWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        96 ~kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ++|+.||++|||||+++||+||+.++|++
T Consensus       130 ~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          130 NRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             CCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999998875

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.96  E-value=2.1e-30  Score=224.11  Aligned_cols=104  Identities=32%  Similarity=0.656  Sum_probs=61.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-Ch
Q 021164           20 KLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN-RW   98 (316)
Q Consensus        20 ~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW   98 (316)
                      .+++++||+|||++|+++|.+||..+|..||+.|+ +|+++||++||.++|+|.+++++||+|||++|+++|++||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            46789999999999999999999988999999998 99999999999999999999999999999999999999996 69


Q ss_pred             HHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           99 SQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        99 ~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ..||+.|||||+.||++||..++.+.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~  107 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPE  107 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCcc
Confidence            99999999999999999999887543

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=8.8e-23  Score=154.63  Aligned_cols=67  Identities=28%  Similarity=0.659  Sum_probs=64.4

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHH
Q 021164           17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEE   84 (316)
Q Consensus        17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED   84 (316)
                      ..+.+++++||+|||++|+++|.+||..+|..||+.|+ +||++||++||.++|+|.+++++||+|||
T Consensus         3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            46789999999999999999999999888999999998 99999999999999999999999999998

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.83  E-value=2.2e-21  Score=162.12  Aligned_cols=75  Identities=27%  Similarity=0.625  Sum_probs=51.0

Q ss_pred             cccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           49 VARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        49 IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ||+.|+ +||++||++||.++|+|.+++++||+|||++|+++|++||. +|..||+.|||||+.||++||..++.+.
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~   76 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE   76 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence            788998 99999999999999999999999999999999999999996 6999999999999999999999887643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.78  E-value=1.3e-19  Score=166.64  Aligned_cols=106  Identities=19%  Similarity=0.287  Sum_probs=92.9

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCC-----CccccccccccccccccccccccccccCCCC-----------------
Q 021164           18 GNKLRKGLWSPEEDDKLMNYMLKNGQG-----CWSDVARNAGLQRCGKSCRLRWINYLRPDLK-----------------   75 (316)
Q Consensus        18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~-----nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk-----------------   75 (316)
                      .+.+.|++||+|||+.|+++|+++|..     .|..||+.|+ |||+.|||.||..+|.+.+.                 
T Consensus         3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G   81 (246)
T 1ign_A            3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG   81 (246)
T ss_dssp             -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence            456789999999999999999999864     3999999998 99999999999999999997                 


Q ss_pred             ------------CCCCCHHHHHHHHHHHHH-h------------------------------------------------
Q 021164           76 ------------RGAFSPQEEELIIHLHSL-L------------------------------------------------   94 (316)
Q Consensus        76 ------------k~~WT~EED~~Llelv~~-~------------------------------------------------   94 (316)
                                  +..||.|||..|...+++ +                                                
T Consensus        82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~  161 (246)
T 1ign_A           82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR  161 (246)
T ss_dssp             CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred             CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence                        899999999999999887 1                                                


Q ss_pred             -----CC----ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           95 -----GN----RWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        95 -----G~----kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                           |.    .|.+||+.+|+||.+++|+||+.++++.
T Consensus       162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                 21    7999999999999999999999998764

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.74  E-value=8.8e-19  Score=134.78  Aligned_cols=60  Identities=23%  Similarity=0.369  Sum_probs=48.0

Q ss_pred             ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           62 CRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        62 Cr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      +.-||.++|+|.+++++||+|||++|+++|++||++|++||+.| |||+++||+||+.+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999999 9999999999987644

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.72  E-value=1.9e-18  Score=144.61  Aligned_cols=86  Identities=17%  Similarity=0.321  Sum_probs=79.5

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----cccccccccccccccccc-----CCCCCC-CCCHHH
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNA----GLQRCGKSCRLRWINYLR-----PDLKRG-AFSPQE   83 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~gRt~kQCr~RW~n~L~-----p~lkk~-~WT~EE   83 (316)
                      .....+..++++||+|||+.|+++|.+||.++|+.||+.+    + +||+.||++||+++|+     |.++++ +|++||
T Consensus         8 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~   86 (121)
T 2juh_A            8 RSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDL   86 (121)
T ss_dssp             CCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHH
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHH
Confidence            3445678899999999999999999999998899999975    5 9999999999999998     999999 999999


Q ss_pred             HHHHHHHHHHhCCChHH
Q 021164           84 EELIIHLHSLLGNRWSQ  100 (316)
Q Consensus        84 D~~Llelv~~~G~kW~~  100 (316)
                      +.+|++++..||++|.+
T Consensus        87 ~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           87 LDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHccchhc
Confidence            99999999999999976

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.5e-17  Score=124.39  Aligned_cols=62  Identities=26%  Similarity=0.396  Sum_probs=58.3

Q ss_pred             ccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhccCC
Q 021164           68 NYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSS  130 (316)
Q Consensus        68 n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~~~  130 (316)
                      .+|+|.+++++||+|||++|++++++||.+|.+||+ ++|||+.|||+||+.++++..++...
T Consensus         1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            379999999999999999999999999999999999 88999999999999999999887544

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.70  E-value=5.1e-18  Score=124.63  Aligned_cols=57  Identities=26%  Similarity=0.483  Sum_probs=54.0

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCC
Q 021164           18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK   75 (316)
Q Consensus        18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk   75 (316)
                      .|.+++++||+|||++|+++|.+||..+|..||+.|+ +||+.||++||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            4778999999999999999999999878999999998 99999999999999999876

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.69  E-value=5.9e-18  Score=120.95  Aligned_cols=52  Identities=44%  Similarity=0.842  Sum_probs=49.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD   73 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~   73 (316)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +||++||++||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5789999999999999999999888999999998 999999999999999985

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.68  E-value=2e-17  Score=138.66  Aligned_cols=83  Identities=22%  Similarity=0.341  Sum_probs=75.4

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccc----ccccccccccccccccc-----cCCCCCCCCCHHH-
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNA----GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQE-   83 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l----~~gRt~kQCr~RW~n~L-----~p~lkk~~WT~EE-   83 (316)
                      ........++++||+|||+.|+++|++||.++|+.|++.+    + +||+.||++||.+++     +|.++++.|+++| 
T Consensus        22 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~  100 (122)
T 2roh_A           22 RPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQEL  100 (122)
T ss_dssp             CCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHH
T ss_pred             CcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHH
Confidence            3444667789999999999999999999998999999864    5 999999999999999     8999999999999 


Q ss_pred             HHHHHHHHHHhCCC
Q 021164           84 EELIIHLHSLLGNR   97 (316)
Q Consensus        84 D~~Llelv~~~G~k   97 (316)
                      +.+|++++..||++
T Consensus       101 ~~~v~~~h~~~g~~  114 (122)
T 2roh_A          101 LDRVLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhhH
Confidence            89999999999974

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.68  E-value=8.2e-17  Score=122.53  Aligned_cols=58  Identities=21%  Similarity=0.302  Sum_probs=55.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           70 LRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        70 L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      ++|.+++++||+|||++|+++|.+||.+|..||++|||||++|||+||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999988765

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.66  E-value=1.1e-17  Score=119.30  Aligned_cols=52  Identities=35%  Similarity=0.676  Sum_probs=48.3

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD   73 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~   73 (316)
                      +++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            4789999999999999999999878999999998 999999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.66  E-value=2.3e-17  Score=124.51  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=59.2

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccc-ccccccccccccccccCCCCCCCCC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGL-QRCGKSCRLRWINYLRPDLKRGAFS   80 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~p~lkk~~WT   80 (316)
                      ...+..++++||+|||++|+++|.+||.++|..||+.|+. +||+.||++||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            4567788999999999999999999998889999999864 8999999999999999999988764

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.64  E-value=1.7e-16  Score=116.47  Aligned_cols=55  Identities=20%  Similarity=0.400  Sum_probs=51.5

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~  125 (316)
                      +|.+++++||+|||++|+++|.+|| ++|..||++|+|||+.|||+||+.+|++.+
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i   58 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS   58 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence            5789999999999999999999999 699999999999999999999999987654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.62  E-value=7.1e-17  Score=120.91  Aligned_cols=57  Identities=25%  Similarity=0.465  Sum_probs=49.5

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccc-cccccccccccccccccCCCC
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG-LQRCGKSCRLRWINYLRPDLK   75 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~p~lk   75 (316)
                      ...+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++|.++
T Consensus         7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            445789999999999999999999988999998753 389999999999999998874

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.61  E-value=6.4e-16  Score=110.20  Aligned_cols=50  Identities=28%  Similarity=0.535  Sum_probs=46.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      +++++||+|||++|+++|++||. +|..||+.|||||+.||++||+.+|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999998 999999999999999999999998864

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.60  E-value=2.6e-16  Score=115.91  Aligned_cols=56  Identities=20%  Similarity=0.485  Sum_probs=51.7

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCC
Q 021164           18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDL   74 (316)
Q Consensus        18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~l   74 (316)
                      .+.+.+++||+|||++|+++|.+||..+|..||+.|+ +||++||++||.++|.+..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~~   58 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGPS   58 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCCC
Confidence            3678899999999999999999999878999999998 9999999999999998653

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.59  E-value=1.4e-15  Score=108.50  Aligned_cols=50  Identities=30%  Similarity=0.653  Sum_probs=46.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.|||+||..+|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            57899999999999999999997 699999999999999999999988753

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=2.8e-15  Score=113.08  Aligned_cols=59  Identities=24%  Similarity=0.293  Sum_probs=54.4

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHhhhhc
Q 021164           69 YLRPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        69 ~L~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk~~kk  127 (316)
                      ..++..++++||+|||++|+++|++|| ++|..||+.|+  |||+.|||+||+.++++.+.+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k   64 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS   64 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence            356778899999999999999999999 69999999999  999999999999999987665

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=2.4e-15  Score=107.95  Aligned_cols=49  Identities=27%  Similarity=0.366  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHh
Q 021164           75 KRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk  123 (316)
                      ++++||+|||++|+++|++|| ++|..||+.|+  |||+.||++||..++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999999874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.5e-16  Score=118.95  Aligned_cols=60  Identities=25%  Similarity=0.377  Sum_probs=54.7

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGA   78 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~   78 (316)
                      ...|.+++++||+|||++|+++|.+||. +|..||+ ++ +||++||++||.++|+|.+++++
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence            4678999999999999999999999998 6999999 77 89999999999999999877653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.1e-15  Score=113.89  Aligned_cols=57  Identities=25%  Similarity=0.432  Sum_probs=53.3

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      .|.+++++||+|||++|+++|++|| ++|..||++|+|||+.||++||..+|++.+++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~   61 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK   61 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccC
Confidence            4778999999999999999999999 79999999999999999999999999877655

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.56  E-value=3e-15  Score=110.22  Aligned_cols=53  Identities=15%  Similarity=0.264  Sum_probs=49.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      .+.+.+++||+|||++|+++|++|| ++|.+||++|||||+.||++||..++..
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~   56 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG   56 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence            4678999999999999999999999 7999999999999999999999988753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.56  E-value=9e-16  Score=112.44  Aligned_cols=52  Identities=23%  Similarity=0.437  Sum_probs=47.9

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      ..+.+++||+|||++|+++|.+||..+|..||+.|+.+||++||++||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            4567899999999999999999998889999999976899999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=8.5e-16  Score=117.46  Aligned_cols=61  Identities=25%  Similarity=0.377  Sum_probs=55.8

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCC-----CCccccccccccccccccccccccccccCCCCCCCC
Q 021164           18 GNKLRKGLWSPEEDDKLMNYMLKNGQ-----GCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAF   79 (316)
Q Consensus        18 ~~~lkKg~WT~EEDe~L~~lV~kyG~-----~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~W   79 (316)
                      +|.+.+++||+|||++|+++|.+||.     .+|..||+.|+ +||++||++||++||.+.++.+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~~   68 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGIP   68 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCCC
Confidence            57889999999999999999999996     67999999998 999999999999999988776643

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.8e-15  Score=112.39  Aligned_cols=57  Identities=19%  Similarity=0.232  Sum_probs=52.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC------CChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLG------NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G------~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      +|.+.+++||+|||++|+++|.+||      .+|.+||++|+|||+.||++||..++++..+.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~   65 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKA   65 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999      78999999999999999999999888876654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.53  E-value=1e-14  Score=109.16  Aligned_cols=52  Identities=23%  Similarity=0.429  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC--CCCHHHHHHHHHHHhHhhh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP--GRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp--gRT~~q~KnRW~~llrk~~  125 (316)
                      .++++||+|||++|+++|++|| .+|.+||+.++  |||+.|||+||+.++|..+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4789999999999999999999 58999999865  9999999999999988653

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.52  E-value=2e-15  Score=108.37  Aligned_cols=50  Identities=26%  Similarity=0.470  Sum_probs=46.1

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCcccccccccc-cccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGL-QRCGKSCRLRWINYLR   71 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~-gRt~kQCr~RW~n~L~   71 (316)
                      ++++||+|||++|+++|.+||.++|..||+.++. +||+.||++||.++|.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5799999999999999999998889999999854 6999999999999875

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.50  E-value=1.9e-15  Score=114.93  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=54.3

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKR   76 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk   76 (316)
                      +..|.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus         2 s~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            2 SSGSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            3468889999999999999999999998 6999999998 999999999999999887666

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.50  E-value=2.3e-14  Score=104.95  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=46.7

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCC-CCCHHHHHHHHHHHh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLP-GRTDNEIKNFWNSTI  121 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lp-gRT~~q~KnRW~~ll  121 (316)
                      +..+.+++||+|||++|+++|++|| ++|.+||++|+ +||+.||++||..+.
T Consensus         4 ~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            4 GSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999999 89999999999 999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.24  E-value=2e-15  Score=119.63  Aligned_cols=56  Identities=23%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           69 YLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        69 ~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      .++|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||+.++++.
T Consensus         9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            56889999999999999999999999999999999999999999999999998864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.45  E-value=3.6e-14  Score=116.06  Aligned_cols=83  Identities=23%  Similarity=0.297  Sum_probs=69.1

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccc---cccccccccccccccc-----cCCCCCCCCCHHHHH
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG---LQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEE   85 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~---~gRt~kQCr~RW~n~L-----~p~lkk~~WT~EED~   85 (316)
                      ....++..++++||+|||++|+++|.+||.++|+.|++.+.   ++||+.||++||.+++     +|.++++.-+++|-.
T Consensus         4 ~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l   83 (105)
T 2aje_A            4 MLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELL   83 (105)
T ss_dssp             -----CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHH
T ss_pred             CccccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHH
Confidence            34456788899999999999999999999989999998652   3999999999999998     699999988888876


Q ss_pred             H-HHHHHHHhCC
Q 021164           86 L-IIHLHSLLGN   96 (316)
Q Consensus        86 ~-Llelv~~~G~   96 (316)
                      . +++|+..+|+
T Consensus        84 ~rv~~~~~~~~~   95 (105)
T 2aje_A           84 NRVLNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            6 8888877663

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.41  E-value=2.1e-13  Score=104.70  Aligned_cols=51  Identities=10%  Similarity=0.261  Sum_probs=47.6

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           72 PDLKRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        72 p~lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      +...+++||+|||++|++++.+||    .+|.+||++|||||+.||++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            457889999999999999999999    689999999999999999999998875

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.39  E-value=1.6e-13  Score=107.88  Aligned_cols=69  Identities=22%  Similarity=0.390  Sum_probs=59.9

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCccccccc----cccccccccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGCWSDVARN----AGLQRCGKSCRLRWINYL-----RPDLKRG-AFSPQEEELIIHLHSL   93 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~----l~~gRt~kQCr~RW~n~L-----~p~lkk~-~WT~EED~~Llelv~~   93 (316)
                      ++||+|||++|+++|++||.++|+.||+.    ++ +||+.||++||+++|     +|.++++ +..++...+++.|+..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999999899999985    76 999999999999988     6776665 6777777888888754

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.39  E-value=6.9e-14  Score=117.29  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=62.0

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhC
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLG   95 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G   95 (316)
                      ...|.+++|+||+|||++|+++|.+||.. |..||+.|+ |||+.||+.||.++|++.+..++|+.+--.    ......
T Consensus        47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~-W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~----p~~~kk  120 (131)
T 3zqc_A           47 HLDPAVVKHAWTPEEDETIFRNYLKLGSK-WSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEILL----PDRSKK  120 (131)
T ss_dssp             HTSTTCCCSCCCHHHHHHHHHHHHHSCSC-HHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCCC----CCCC--
T ss_pred             ccCccccCCCCCHHHHHHHHHHHHHHCcC-HHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccccC----chhhhh
Confidence            45678899999999999999999999965 999999998 999999999999999999999998876311    012224


Q ss_pred             CChHHhhccC
Q 021164           96 NRWSQIAARL  105 (316)
Q Consensus        96 ~kW~~IAk~l  105 (316)
                      .+|..|++.+
T Consensus       121 ~~~~~i~k~~  130 (131)
T 3zqc_A          121 RKAADVPKKL  130 (131)
T ss_dssp             ----------
T ss_pred             hhhhhcchhc
Confidence            5688887765

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.37  E-value=1.3e-13  Score=105.97  Aligned_cols=58  Identities=22%  Similarity=0.402  Sum_probs=47.6

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCC
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLK   75 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lk   75 (316)
                      -+...|.+++++||+|||++|+++|.+||.+ |+.||+.|  |||+.||+.||.. |....+
T Consensus        14 ~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l--gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           14 LYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL--GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             -----CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH--TSCHHHHHHHHHH-CSCCCS
T ss_pred             eeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh--CCCHHHHHHHHHH-HHHHcc
Confidence            4667899999999999999999999999987 99999998  7999999999985 444433

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.36  E-value=8.3e-13  Score=98.37  Aligned_cols=51  Identities=22%  Similarity=0.386  Sum_probs=46.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHhh---ccCCCCCHHHHHHHHHHHhHhh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGNRWSQIA---ARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~kW~~IA---k~lpgRT~~q~KnRW~~llrk~  124 (316)
                      -++.+||+|||+.|+++|++||.+|.+|+   .++++||..+||+||+.++|+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5779999999999999998753

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-13  Score=106.49  Aligned_cols=51  Identities=18%  Similarity=0.380  Sum_probs=46.9

Q ss_pred             CCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164           17 NGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY   69 (316)
Q Consensus        17 ~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~   69 (316)
                      ......+++||+|||++|+++|++|| .+|..||++|+ +||+.||+.||+++
T Consensus        12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           12 SKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             CCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            44556689999999999999999999 78999999998 99999999999998

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.34  E-value=4.9e-13  Score=104.00  Aligned_cols=48  Identities=15%  Similarity=0.297  Sum_probs=45.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164           73 DLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        73 ~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      ...+++||+|||++|++++++||.+|.+||++|++||+.||++||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456889999999999999999999999999999999999999999755

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.33  E-value=1.2e-12  Score=109.10  Aligned_cols=55  Identities=24%  Similarity=0.555  Sum_probs=50.4

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~  125 (316)
                      .+..++++||+|||++|+++|.+||.+|..||+.|||||+.||+.||...+...+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~   60 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSI   60 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccc
Confidence            4568899999999999999999999999999999999999999999999886544

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.33  E-value=2.2e-12  Score=101.31  Aligned_cols=49  Identities=27%  Similarity=0.492  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164           77 GAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~  125 (316)
                      .+||+|||++|+++|++||. +|+.|++.    |+|||+++||+||++++++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999997 99999995    899999999999999998654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.32  E-value=1.2e-12  Score=105.40  Aligned_cols=51  Identities=29%  Similarity=0.660  Sum_probs=47.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           73 DLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        73 ~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ++++++||+|||++|+++|++||. +|..||+.|||||+.||+.||..++.+
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p   52 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   52 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCC
Confidence            378999999999999999999996 699999999999999999999988753

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.32  E-value=3.9e-12  Score=104.01  Aligned_cols=55  Identities=24%  Similarity=0.392  Sum_probs=49.1

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhccC----CCCCHHHHHHHHHHHhHhhh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAARL----PGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~l----pgRT~~q~KnRW~~llrk~~  125 (316)
                      .+..++++||+|||++|+++|++||. +|+.|++.+    ++||+.+||+||+.+++...
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~   67 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAK   67 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34578899999999999999999996 999999965    89999999999999998654

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.28  E-value=7.7e-13  Score=101.60  Aligned_cols=55  Identities=15%  Similarity=0.387  Sum_probs=49.3

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      ..++...+++||++||++|++++.+||.   .+|.+||+.|| |||..||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            4566778899999999999999999993   56999999998 9999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=98.95  E-value=3e-13  Score=107.08  Aligned_cols=57  Identities=26%  Similarity=0.477  Sum_probs=51.7

Q ss_pred             CCCCCCCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccC
Q 021164           14 SNSNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRP   72 (316)
Q Consensus        14 ~n~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p   72 (316)
                      .....+.+.+++||+|||++|+++|.+||. +|..||+.|+ |||+.||+.||.++|..
T Consensus         7 ~~~~~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A            7 HSSGRENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            344568889999999999999999999998 5999999998 99999999999998863

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.26  E-value=7.8e-12  Score=104.58  Aligned_cols=56  Identities=27%  Similarity=0.453  Sum_probs=51.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164           70 LRPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        70 L~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~  125 (316)
                      +.+..++++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+.+++...
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~   71 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   71 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhc
Confidence            566788999999999999999999997 99999997    499999999999999998643

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.24  E-value=3.7e-12  Score=117.23  Aligned_cols=55  Identities=25%  Similarity=0.519  Sum_probs=48.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCC------hHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           72 PDLKRGAFSPQEEELIIHLHSLLGNR------WSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        72 p~lkk~~WT~EED~~Llelv~~~G~k------W~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      +.+++++||+|||++|+++|++||++      |..||++|||||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35788999999999999999999875      99999999999999999999999999865

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.23  E-value=7e-12  Score=101.60  Aligned_cols=49  Identities=20%  Similarity=0.401  Sum_probs=45.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           76 RGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      +++||+|||++|+++|.+||. +|..||..|||||+.||+.||..++...
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~   50 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPA   50 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHccc
Confidence            579999999999999999996 8999999999999999999999888643

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.20  E-value=1.6e-11  Score=98.33  Aligned_cols=51  Identities=20%  Similarity=0.423  Sum_probs=46.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhHhhh
Q 021164           75 KRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llrk~~  125 (316)
                      .+++||.|||++|++++.+||    .+|.+||++|||||+++|++||+.+++...
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~   61 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK   61 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            467999999999999999996    679999999999999999999999987643

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.20  E-value=3.4e-11  Score=100.84  Aligned_cols=55  Identities=25%  Similarity=0.465  Sum_probs=49.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhh
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~  125 (316)
                      ....++++||+|||+.|+++|++||. +|+.|++.    |++||+.+||+||+.+++...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~   85 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTAS   85 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhcc
Confidence            34467899999999999999999996 99999986    499999999999999998654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=99.04  E-value=2.5e-10  Score=91.47  Aligned_cols=65  Identities=17%  Similarity=0.214  Sum_probs=60.1

Q ss_pred             ccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccC-----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164           60 KSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARL-----PGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        60 kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~l-----pgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      .=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+.++     ++||..+||+||..+.++..+..
T Consensus        18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            5678999999986    89999999999999999999999999998     58999999999999999887765

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.00  E-value=5.6e-10  Score=82.34  Aligned_cols=48  Identities=15%  Similarity=0.146  Sum_probs=44.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      ...+||+||++++++++.+||.+|..||..||+||..+|+.+|....+
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk   58 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK   58 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence            457999999999999999999999999999999999999999976543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.99  E-value=6.5e-11  Score=94.80  Aligned_cols=48  Identities=17%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             cccCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNG---QGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG---~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      .+++||+|||++|++++.+|+   ...|..||+.|| |||..||+.||..++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            367899999999999999997   356999999998 999999999999874

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.82  E-value=4.6e-09  Score=80.28  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=45.4

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           73 DLKRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        73 ~lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ..+.++||.||+++|.+++.+|+    .+|.+||.++ |||..+|++||+.|.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            45678999999999999999997    5799999998 99999999999998765

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.77  E-value=4.5e-09  Score=96.10  Aligned_cols=49  Identities=14%  Similarity=0.304  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           75 KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ...+||+||++++++++.+||++|..||+.+++||..|||++|....|+
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999999999999999999999987765

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.71  E-value=3.1e-09  Score=79.14  Aligned_cols=48  Identities=13%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccc---ccccccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVA---RNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA---~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      .+.+||+|||+.|+++|++||. +|..|+   ..++ +||...+++||++...
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHh
Confidence            5789999999999999999998 799999   4665 9999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=6e-09  Score=76.75  Aligned_cols=50  Identities=12%  Similarity=0.311  Sum_probs=44.0

Q ss_pred             CCCCcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164           18 GNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY   69 (316)
Q Consensus        18 ~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~   69 (316)
                      +.....++||+||++++.+++.+||. +|..||+.|+ +||..||+.+|...
T Consensus         7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A            7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHH
T ss_pred             cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            34456789999999999999999995 6999999998 99999999998654

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.58  E-value=7.3e-08  Score=73.95  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=43.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ...||.+|+++|.+++..|+.    +|.+||..+||||..+|+.||..+++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999984    699999999999999999999988654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.51  E-value=5.6e-08  Score=97.39  Aligned_cols=46  Identities=15%  Similarity=0.322  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           77 GAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      ..||+||-+++++++.+||.+|..||+.+.+||..|||++|....+
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kk  426 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  426 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999975444

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=2.2e-08  Score=76.44  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=42.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      ..++.||.|||++|.+++.+|+.   ..|..||+.+  |||..||+.||..+..
T Consensus         6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            34678999999999999999983   5699999986  6999999999987654

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.40  E-value=5.5e-08  Score=71.54  Aligned_cols=48  Identities=21%  Similarity=0.461  Sum_probs=43.3

Q ss_pred             ccCCCHHHHHHHHHHHHHh--------CCCCcccccc-cccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKN--------GQGCWSDVAR-NAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~ky--------G~~nW~~IA~-~l~~gRt~kQCr~RW~n~L~   71 (316)
                      +.+||+|||+.|+++|.+|        |..-|..+|+ .++ .+|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            5789999999999999999        5556999999 787 9999999999999875

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.39  E-value=2.7e-07  Score=67.80  Aligned_cols=47  Identities=19%  Similarity=0.352  Sum_probs=42.6

Q ss_pred             CCCCCHHHHHHHHHHHHHh--------CCC-hHHhhc-cCCCCCHHHHHHHHHHHhH
Q 021164           76 RGAFSPQEEELIIHLHSLL--------GNR-WSQIAA-RLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~--------G~k-W~~IAk-~lpgRT~~q~KnRW~~llr  122 (316)
                      +.+||+|||+.|++.|.+|        |++ |.++++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5799999999999999999        654 999999 7999999999999987664

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.36  E-value=9.7e-08  Score=73.25  Aligned_cols=49  Identities=27%  Similarity=0.504  Sum_probs=43.6

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccccccccC
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYLRP   72 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L~p   72 (316)
                      ...||.+|+++|.+++..|+.   .+|..||..|| +||..+|+.||..++.-
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence            357999999999999999985   57999999998 99999999999987643

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=3e-06  Score=62.77  Aligned_cols=49  Identities=14%  Similarity=0.236  Sum_probs=44.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhc-cCCCCCHHHHHHHHHH
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAA-RLPGRTDNEIKNFWNS  119 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk-~lpgRT~~q~KnRW~~  119 (316)
                      .|.+...+||+||-++..+++.+||.+|..|++ .+++||..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            367888999999999999999999999999999 5899999999988864

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.20  E-value=2.7e-06  Score=67.68  Aligned_cols=52  Identities=13%  Similarity=0.224  Sum_probs=47.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---ChHHhhccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164           77 GAFSPQEEELIIHLHSLLGN---RWSQIAARLPGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~---kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      --||.|||..||...++-|.   .|..||+.|.+|+.+||++||+.|++-..+..
T Consensus        34 vlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~~~   88 (95)
T 1ug2_A           34 VLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHTAC   88 (95)
T ss_dssp             SSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHHCS
T ss_pred             EEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHh
Confidence            36999999999999999996   79999999999999999999999998776654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.17  E-value=5.4e-07  Score=82.42  Aligned_cols=49  Identities=18%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      ....+||+||++++++++.+||. +|..||+.|+ +||..||+.+|.++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            35688999999999999999995 5999999998 9999999999988764

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=98.07  E-value=5.4e-06  Score=66.26  Aligned_cols=61  Identities=18%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             ccccccccCCCCCCCCCHHHHHHHHHHHHHhCCChHHhhccCC-----CCCHHHHHHHHHHHhHhhhhcc
Q 021164           64 LRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNRWSQIAARLP-----GRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        64 ~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lp-----gRT~~q~KnRW~~llrk~~kk~  128 (316)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+.++.     .||-.++|.||..+.++..+..
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34555654    3689999999999999999999999999873     7999999999999999887764

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.00  E-value=1e-06  Score=67.57  Aligned_cols=44  Identities=14%  Similarity=0.198  Sum_probs=39.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC---CCcccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWI   67 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~   67 (316)
                      ...||.+|+++|.+++..|..   ..|.+||+.|| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            567999999999999999975   36999999998 999999999985

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=97.99  E-value=1.3e-05  Score=76.36  Aligned_cols=99  Identities=15%  Similarity=0.224  Sum_probs=79.6

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc----cc------------------------------
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI----NY------------------------------   69 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~----n~------------------------------   69 (316)
                      +.||..+...++.++.+||..+|..||..|+ ++|...++.-+.    +|                              
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3599999999999999999999999999998 898887743211    11                              


Q ss_pred             -------------c---cCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHhhc------------cCCCCCHHHHHHHH
Q 021164           70 -------------L---RPDLKRGAFSPQEEELIIHLHSLLGN----RWSQIAA------------RLPGRTDNEIKNFW  117 (316)
Q Consensus        70 -------------L---~p~lkk~~WT~EED~~Llelv~~~G~----kW~~IAk------------~lpgRT~~q~KnRW  117 (316)
                                   |   -+..+...||++||..||-++.+||-    .|..|..            ++..||+.+|..|=
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                         0   12234578999999999999999994    6999962            34679999999999


Q ss_pred             HHHhHh
Q 021164          118 NSTIKK  123 (316)
Q Consensus       118 ~~llrk  123 (316)
                      ..|++-
T Consensus       270 ~tLi~~  275 (304)
T 1ofc_X          270 NTLITL  275 (304)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988874

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.98  E-value=1.6e-06  Score=66.50  Aligned_cols=44  Identities=23%  Similarity=0.388  Sum_probs=38.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHH
Q 021164           75 KRGAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWN  118 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~  118 (316)
                      ...+||.+|+++|..++.+|+.    +|.+||..+||||..+|+.+|.
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            3568999999999999999984    7999999999999999999884

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.21  E-value=9.8e-07  Score=66.67  Aligned_cols=48  Identities=17%  Similarity=0.306  Sum_probs=43.8

Q ss_pred             CCCHHHHHHHHHHHHHhCC---ChHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           78 AFSPQEEELIIHLHSLLGN---RWSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        78 ~WT~EED~~Llelv~~~G~---kW~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      -||.|||..||..+++-|.   .|..||+.| +||++||++||..|++-..+
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf~k   66 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLFEK   66 (70)
Confidence            6999999999999999997   799999999 99999999999998875443

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.71  E-value=4.5e-05  Score=60.75  Aligned_cols=45  Identities=22%  Similarity=0.163  Sum_probs=41.9

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHH
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      ...||+||.++..+++..||++|..||+.||+||..+|-..|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            468999999999999999999999999999999999999988644

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.70  E-value=6.5e-05  Score=56.71  Aligned_cols=44  Identities=18%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhc-cCCCCCHHHHHHHHHH
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAA-RLPGRTDNEIKNFWNS  119 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk-~lpgRT~~q~KnRW~~  119 (316)
                      ..+||+||-++..+++.+||.+|..|++ .+|+||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4689999999999999999999999999 5899999999998873

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.68  E-value=1.9e-05  Score=58.40  Aligned_cols=50  Identities=10%  Similarity=0.169  Sum_probs=44.2

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVAR-NAGLQRCGKSCRLRWI   67 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~gRt~kQCr~RW~   67 (316)
                      +..|.+....||+||-++..+++.+||. +|..||+ .++ +|+..||.+-|.
T Consensus         2 ~~~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   52 (63)
T 2yqk_A            2 SSGSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYY   52 (63)
T ss_dssp             CCCCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHH
T ss_pred             CCCCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHh
Confidence            3568888899999999999999999996 5999998 587 999999988764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.41  E-value=0.00016  Score=55.94  Aligned_cols=53  Identities=17%  Similarity=0.349  Sum_probs=43.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC----------CChHHhhccC----CCCCHHHHHHHHHHHhHhhhhcc
Q 021164           76 RGAFSPQEEELIIHLHSLLG----------NRWSQIAARL----PGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G----------~kW~~IAk~l----pgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      ...||.+|-.+||+++.++.          ..|..||..|    -.||+.||+++|..|.+...+.+
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k   70 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAK   70 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999998642          2599999986    36999999999999988755543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.25  E-value=8.6e-05  Score=74.52  Aligned_cols=47  Identities=17%  Similarity=0.306  Sum_probs=42.7

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY   69 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~   69 (316)
                      ....+||.+|.+++++++.+||. +|..||+.|+ +|+..||+..|.++
T Consensus       378 ~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~  424 (482)
T 2xag_B          378 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            35689999999999999999996 6999999999 99999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.23  E-value=9.5e-05  Score=59.05  Aligned_cols=48  Identities=13%  Similarity=0.233  Sum_probs=42.0

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG----LQRCGKSCRLRWINYL   70 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~gRt~kQCr~RW~n~L   70 (316)
                      ...+||.||+..|++++++|+.+ |..|+..+.    .+||..++++||..+.
T Consensus        29 ~~~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v~   80 (93)
T 3hm5_A           29 HDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             CBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence            34899999999999999999987 999999883    2799999999997654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=96.97  E-value=0.0016  Score=57.49  Aligned_cols=103  Identities=15%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhC--CCCccccccc--ccccccccccccc-------ccc--------------------
Q 021164           20 KLRKGLWSPEEDDKLMNYMLKNG--QGCWSDVARN--AGLQRCGKSCRLR-------WIN--------------------   68 (316)
Q Consensus        20 ~lkKg~WT~EEDe~L~~lV~kyG--~~nW~~IA~~--l~~gRt~kQCr~R-------W~n--------------------   68 (316)
                      +-....||..|-..|++++.+||  ...|..|++.  +. +|+...+++-       ...                    
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~   82 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK   82 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence            34456799999999999999999  5679999853  33 4444433220       000                    


Q ss_pred             ------------------------ccc--------------------CCCCCCCCCHHHHHHHHHHHHHhC-CChHHhhc
Q 021164           69 ------------------------YLR--------------------PDLKRGAFSPQEEELIIHLHSLLG-NRWSQIAA  103 (316)
Q Consensus        69 ------------------------~L~--------------------p~lkk~~WT~EED~~Llelv~~~G-~kW~~IAk  103 (316)
                                              .|.                    +..-...||++||..||-.+.+|| ++|.+|..
T Consensus        83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~  162 (211)
T 4b4c_A           83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM  162 (211)
T ss_dssp             CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence                                    000                    011123699999999999999999 99999954


Q ss_pred             --cC------------CCCCHHHHHHHHHHHhHh
Q 021164          104 --RL------------PGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus       104 --~l------------pgRT~~q~KnRW~~llrk  123 (316)
                        .|            ..++...+..|-..|++-
T Consensus       163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             ChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence              21            124567899997766653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=96.92  E-value=0.00026  Score=56.27  Aligned_cols=43  Identities=14%  Similarity=0.359  Sum_probs=38.9

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWI   67 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~   67 (316)
                      ...||+||.+++.+++..||. +|..||+.++ +|+..||.+-|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence            467999999999999999995 5999999998 999999998764

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.84  E-value=0.00011  Score=56.76  Aligned_cols=50  Identities=22%  Similarity=0.524  Sum_probs=39.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCC---------CCcccccccc---ccccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQ---------GCWSDVARNA---GLQRCGKSCRLRWINYL   70 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~---------~nW~~IA~~l---~~gRt~kQCr~RW~n~L   70 (316)
                      .+...||.+|-..|+++......         ..|..||..|   +-.|++.||+.+|.+..
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            35678999999999999876321         2599999876   34699999999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.80  E-value=0.00042  Score=52.23  Aligned_cols=44  Identities=16%  Similarity=0.115  Sum_probs=39.0

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCcccccc-cccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVAR-NAGLQRCGKSCRLRWI   67 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~-~l~~gRt~kQCr~RW~   67 (316)
                      ....||+||-++..+++.+||. +|..||+ .|+ +|+..||.+-|.
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHH
Confidence            3467999999999999999996 5999999 588 999999988765

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.62  E-value=0.00033  Score=52.90  Aligned_cols=46  Identities=15%  Similarity=0.307  Sum_probs=40.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCC--CCcccccccccccccccccccccccccc
Q 021164           24 GLWSPEEDDKLMNYMLKNGQ--GCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~--~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      -.||.|||..|+..+++.|.  .-|..||..+  +|++.|+..|++..+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            46999999999999999986  3599999887  5999999999988664

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.56  E-value=0.006  Score=59.47  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=78.5

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccc----------------------------------
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY----------------------------------   69 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~----------------------------------   69 (316)
                      +-||.-+=..++.++.+||..+-..||..|.++++...++ +|...                                  
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3588888899999999999988999999885467776665 22210                                  


Q ss_pred             --------ccC----------C-CCCCCCCHHHHHHHHHHHHHhC----CChHHhhcc------------CCCCCHHHHH
Q 021164           70 --------LRP----------D-LKRGAFSPQEEELIIHLHSLLG----NRWSQIAAR------------LPGRTDNEIK  114 (316)
Q Consensus        70 --------L~p----------~-lkk~~WT~EED~~Llelv~~~G----~kW~~IAk~------------lpgRT~~q~K  114 (316)
                              -+|          . -+...||++||..||-++.+||    +.|..|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                    011          1 1356799999999999999999    469998432            3569999999


Q ss_pred             HHHHHHhHhhhhc
Q 021164          115 NFWNSTIKKRLKN  127 (316)
Q Consensus       115 nRW~~llrk~~kk  127 (316)
                      .|=..|++-..+.
T Consensus       283 rRc~tLi~~IeKE  295 (374)
T 2y9y_A          283 RRGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999865554

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.48  E-value=0.0017  Score=51.68  Aligned_cols=48  Identities=17%  Similarity=0.380  Sum_probs=41.8

Q ss_pred             cccCCCHHHHHHHHHHHHHhCC--CCccccccccccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQ--GCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~--~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      +--.||.|||..|+...++.|.  +-|..||+.++ +|++.|+++|++..+
T Consensus        32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm   81 (95)
T 1ug2_A           32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHH
Confidence            3456999999999999999985  45999999998 899999999997643

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.93  E-value=0.07  Score=39.66  Aligned_cols=48  Identities=10%  Similarity=0.041  Sum_probs=40.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCC---hHHhhccC--CCCCHHHHHHHHHHHh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGNR---WSQIAARL--PGRTDNEIKNFWNSTI  121 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~k---W~~IAk~l--pgRT~~q~KnRW~~ll  121 (316)
                      -.+-.||+|..+..++++.++|..   +..|.+.|  +|.|..+|+.+...+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999954   78998875  7999999999876543

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=93.64  E-value=0.026  Score=44.93  Aligned_cols=49  Identities=14%  Similarity=0.255  Sum_probs=40.3

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccc----cccccccccccccccc
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG----LQRCGKSCRLRWINYL   70 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~----~gRt~kQCr~RW~n~L   70 (316)
                      ++...||.||...|++++++|... |..|+....    ..|+..+.++||....
T Consensus        28 L~~~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           28 LHDDAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             TCBTTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             hCCCCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            334679999999999999999976 999998763    2688888999987643

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=92.16  E-value=0.25  Score=46.90  Aligned_cols=48  Identities=17%  Similarity=0.255  Sum_probs=42.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCC-ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGN-RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~-kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      -+.||..|...++.+..+||. +|..||..++|+|...|+..+..+..+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            468999999999999999995 799999999999999998777666654

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.65  E-value=0.29  Score=42.82  Aligned_cols=53  Identities=19%  Similarity=0.236  Sum_probs=42.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC---CChHHhhcc--CCCCCHHHHHHHHHHHhHhhhh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLG---NRWSQIAAR--LPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G---~kW~~IAk~--lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      -....||+.|-..|+.++.+||   .+|..|+..  |.+||...|+.-+..++..-.+
T Consensus         5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~   62 (211)
T 4b4c_A            5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK   62 (211)
T ss_dssp             ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence            3557899999999999999999   579999874  7899999999877766655433

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.10  E-value=0.18  Score=37.40  Aligned_cols=51  Identities=12%  Similarity=0.122  Sum_probs=37.8

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCC--Cccccccccc-ccccccccccccccc
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQG--CWSDVARNAG-LQRCGKSCRLRWINY   69 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~--nW~~IA~~l~-~gRt~kQCr~RW~n~   69 (316)
                      .+..+-.||+|..++++++|...|..  -++.|.+.|+ .+.|..|+..+.+.|
T Consensus         3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            34567889999999999999999943  2667877654 256777777665543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=88.80  E-value=0.2  Score=46.73  Aligned_cols=28  Identities=36%  Similarity=0.787  Sum_probs=25.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccc
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGCWSDVAR   51 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~   51 (316)
                      ..|+.+||..|+..|.+||.++|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4599999999999999999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	9e-11
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	3e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	7e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	1e-14
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-14
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	5e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	4e-14
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	9e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	3e-12
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-07
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	4e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	8e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	8e-12
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-10
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	5e-08
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-07
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	8e-07
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	5e-07

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 1e-19
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          L KG W+ EED +L+  + K G   WS +A++    R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.3 bits (131), Expect = 9e-11
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 74  LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK 122
           L +G ++ +E++ +I L    G  RWS IA  L GR   + +  W++ + 
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.2 bits (185), Expect = 3e-18
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD 73
          K  W+ EED+KL   + +NG   W  +A      R    C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (117), Expect = 7e-09
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 76  RGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK 122
           +  ++ +E+E +  L    G + W  IA  LP RTD + ++ W   + 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 71.2 bits (174), Expect = 2e-16
 Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNA---GLQRCGKSCRLRWINYLR-----PDLKRG 77
          +S  E + L+  +   G G W DV   A      R     + +W   +      P  +RG
Sbjct: 3  FSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRG 62

Query: 78 AFSPQEE-ELIIHLHSLLGNR 97
             PQ+  + ++  H+    +
Sbjct: 63 EPVPQDLLDRVLAAHAYWSQQ 83

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 1e-14
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLR 71
          ++  W  EED  L + + K G+G WS +  +     R     + RW    +
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 7e-06
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 75  KRGAFSPQEEELIIHLHSLLGN-RWSQIA--ARLPGRTDNEIKNFWNSTIKK 123
           KR A+  +E++ +       G   WS+I    +   RT   +K+ W  T+KK
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR-TMKK 51

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQG-----CWSDVARNAGLQRCGKSCRLRWINYLRPDLKRG 77
          K  ++ EED+ +++ + KN         + +++        G S R R+  YL   L+  
Sbjct: 1  KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 78 AFSPQEEELIIHLH 91
              +  +L+    
Sbjct: 60 YEVDKFGKLVRDDD 73

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 76  RGAFSPQEEELIIHLHSLLGNR------WSQIAARLPGRTDNEIKNFWNSTIKKRLKNL- 128
           + +F+ +E+E I+ +      R      + +I+  +P  T N I++ +   + KRL+ + 
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 129 -SSSSSTPSPNASDSLISSD 147
                     +   +LI + 
Sbjct: 61  EVDKFGKLVRDDDGNLIKTK 80

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.8 bits (155), Expect = 4e-14
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQ-RCGKSCRLRWINYLRPDL 74
          +K  W+ EE + +   + K G+G W+ +++N     R     + RW    R  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 9e-06
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 3/54 (5%)

Query: 75  KRGAFSPQEEELIIHLHSLLG-NRWSQIA--ARLPGRTDNEIKNFWNSTIKKRL 125
           K+  ++ +E E +       G   W+ I+       RT   IK+ W +  +  +
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 76  RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK 122
           + +++ +E+ +I   H  LGNRW++IA  LPGRTDN IKN WNST++
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (125), Expect = 4e-10
 Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR 71
          K  W+ EED  +     K     W+++A+     R   + +  W + +R
Sbjct: 1  KTSWTEEEDRIIYQAH-KRLGNRWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 75  KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
               ++ +E+ L +      G  +  I+  +  ++  ++KNF+ +  ++R  
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNY-RRRFN 54

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 9/46 (19%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR 71
          W+ EE    +  + K G+  +  ++   G  +     +  ++NY R
Sbjct: 8  WTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR 51

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 9/60 (15%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEE 85
          W+ EE +     +       W+ +++  G  R     +     Y +  +K G       +
Sbjct: 5  WTIEEKELFEQGL-AKFGRRWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETPNQ 62

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 8e-11
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query: 79  FSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN 127
           ++ +E+EL     +  G RW++I+  +  RT  ++K++     K ++K 
Sbjct: 5   WTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 8e-12
 Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 1/52 (1%)

Query: 75  KRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLK 126
               +S QE+E            +  IA+ L  +T  E   ++  T KK   
Sbjct: 16  VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT-KKNEN 66

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 4e-10
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 26 WSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINY 69
          W+ +E+  L+  ++  G G W DVA      +  + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 2e-08
 Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 4/50 (8%)

Query: 20 KLRKGLWSPEEDDKLMNYMLKNGQGC---WSDVARNAGLQRCGKSCRLRW 66
          +  +  W+  +   L   + +  +G    W  +AR     +  + C  R+
Sbjct: 9  RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 5e-08
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 71  RPDLKRGAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFW 117
           R       ++  +++L+            + W +IA  +P ++  +    +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 26 WSPEEDDKLMNYMLKNGQGC---WSDVARNAGLQRCGKSCRLRWINYLRPDLKR 76
          WS +E+      +    +     W++VAR     R  +  +  +   L  D+K 
Sbjct: 4  WSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 43.4 bits (102), Expect = 8e-07
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 79  FSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNLSS 130
           +S +E +      ++      +RW+ +A  + GRT  E+K  +   ++  +K + S
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED-IKYIES 58

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.3 bits (107), Expect = 5e-07
 Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 65  RWINYLRPDLKRGAFSPQEEELIIHLHSLLGNR---WSQIAARLPGRTDNEIKNFWNSTI 121
                     K   ++ + + +I+ +    G +   +S I+ +L  +T  E+ + +   +
Sbjct: 22  NNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81

Query: 122 KKRLKNLSSSSST 134
           +       S  S+
Sbjct: 82  QLFHTACESGPSS 94

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.74
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.73
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.69
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.68
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.53
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.49
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.48
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.45
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.44
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.43
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.43
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.4
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.38
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.35
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.34
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.32
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.3
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.27
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.19
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.18
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.17
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.88
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.88
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.74
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.22
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.13
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.65
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.5
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.4
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.98
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.5
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.05
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.32
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.68
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.64
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	87.71
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	86.58
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	80.67

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=5.8e-21  Score=149.31  Aligned_cols=71  Identities=21%  Similarity=0.261  Sum_probs=65.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCC-----CccccccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHh
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQG-----CWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLL   94 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~-----nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~   94 (316)
                      |++||+|||++|+++|.+||..     +|..||+.|+ |||++|||+||.++|+|.+++++||.+||++|++++..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     4999999998 999999999999999999999999999999998766443

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3.1e-19  Score=126.97  Aligned_cols=52  Identities=44%  Similarity=0.842  Sum_probs=49.9

Q ss_pred             CcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164           21 LRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD   73 (316)
Q Consensus        21 lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~   73 (316)
                      ++||+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            5799999999999999999999888999999998 999999999999999985

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.3e-17  Score=116.34  Aligned_cols=47  Identities=51%  Similarity=0.980  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999999875

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=2.6e-18  Score=121.04  Aligned_cols=50  Identities=34%  Similarity=0.683  Sum_probs=48.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCC
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPD   73 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~   73 (316)
                      |++||+|||++|+++|.+||.++|..||..|+ +||+.||++||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            67899999999999999999989999999998 999999999999999985

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1.9e-16  Score=112.31  Aligned_cols=49  Identities=31%  Similarity=0.682  Sum_probs=46.3

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           74 LKRGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      |.+|+||+|||++|+++|++|| .+|..||+.|++||+.||++||+..|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~   50 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN   50 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            5799999999999999999999 589999999999999999999998775

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=7.8e-17  Score=124.48  Aligned_cols=73  Identities=26%  Similarity=0.419  Sum_probs=61.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccc---ccccccccccccccccc-----cCCCCCCCCCHHHHHHHHHHHHHhCC
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARNA---GLQRCGKSCRLRWINYL-----RPDLKRGAFSPQEEELIIHLHSLLGN   96 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l---~~gRt~kQCr~RW~n~L-----~p~lkk~~WT~EED~~Llelv~~~G~   96 (316)
                      +||+|||++|+++|.+||.++|..||+.+   .++||+.||++||.++|     .|..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            79999999999999999998999999752   23899999999999998     4678889999877   5555555666


Q ss_pred             ChHH
Q 021164           97 RWSQ  100 (316)
Q Consensus        97 kW~~  100 (316)
                      +|++
T Consensus        79 ~wsq   82 (83)
T d2ckxa1          79 YWSQ   82 (83)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3.6e-15  Score=104.65  Aligned_cols=47  Identities=28%  Similarity=0.565  Sum_probs=44.4

Q ss_pred             CCCCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           76 RGAFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      |++||+|||++|+++|++|| ++|..||++|||||+.||++||...|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~   48 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN   48 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCC
Confidence            57899999999999999999 589999999999999999999999875

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.4e-16  Score=110.65  Aligned_cols=53  Identities=25%  Similarity=0.475  Sum_probs=48.6

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccc--cccccccccccccccccccCCCC
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARN--AGLQRCGKSCRLRWINYLRPDLK   75 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~--l~~gRt~kQCr~RW~n~L~p~lk   75 (316)
                      ++.+||+|||++|+++|.+||.++|..||+.  ++ +||+.||++||+++++|.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            4789999999999999999999889999987  54 89999999999999998764

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-14  Score=102.15  Aligned_cols=48  Identities=27%  Similarity=0.389  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCC-ChHHhhccC--CCCCHHHHHHHHHHHhH
Q 021164           75 KRGAFSPQEEELIIHLHSLLGN-RWSQIAARL--PGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G~-kW~~IAk~l--pgRT~~q~KnRW~~llr  122 (316)
                      ++++||+|||++|+++|++||. +|+.||+.+  .+||+.||++||+.+.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4789999999999999999995 899999875  59999999999998765

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.3e-14  Score=102.42  Aligned_cols=51  Identities=22%  Similarity=0.398  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhC-CChHHhhcc--CCCCCHHHHHHHHHHHhHhhh
Q 021164           75 KRGAFSPQEEELIIHLHSLLG-NRWSQIAAR--LPGRTDNEIKNFWNSTIKKRL  125 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G-~kW~~IAk~--lpgRT~~q~KnRW~~llrk~~  125 (316)
                      ++.+||+|||++|+++|++|| .+|..||+.  |++||+.||++||+.+++..+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            478999999999999999999 589999997  569999999999999988653

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.6e-15  Score=103.05  Aligned_cols=45  Identities=24%  Similarity=0.661  Sum_probs=42.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      .||+|||++|+++|.+||.++|..||+.|+ +||+.||+.||.++.
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~f   47 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF   47 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHhC
Confidence            499999999999999999999999999998 999999999998863

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.1e-15  Score=104.39  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=44.5

Q ss_pred             cccCCCHHHHHHHHHHHHHhCCCCccccccccc-ccccccccccccccccc
Q 021164           22 RKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAG-LQRCGKSCRLRWINYLR   71 (316)
Q Consensus        22 kKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~-~gRt~kQCr~RW~n~L~   71 (316)
                      ++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.+++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999989999998743 38999999999998753

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=8.1e-15  Score=101.86  Aligned_cols=47  Identities=23%  Similarity=0.505  Sum_probs=44.0

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      |++||+|||++|+++|++||.. |+.||+.|| |||+.||+.||.++|.
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~-W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNR-WAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSC-HHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhH-HHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            5799999999999999999975 999999998 9999999999998763

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.1e-13  Score=101.35  Aligned_cols=52  Identities=23%  Similarity=0.392  Sum_probs=48.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHhhhhc
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      ...||+|||++|++++.+||.+|..||++||+||+.||++||..++++..+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~   53 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   53 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            3579999999999999999999999999999999999999999998876654

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=3.6e-14  Score=110.28  Aligned_cols=53  Identities=25%  Similarity=0.497  Sum_probs=49.5

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCC------hHHhhccCCCCCHHHHHHHHHHHhHhhhhcc
Q 021164           76 RGAFSPQEEELIIHLHSLLGNR------WSQIAARLPGRTDNEIKNFWNSTIKKRLKNL  128 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~k------W~~IAk~lpgRT~~q~KnRW~~llrk~~kk~  128 (316)
                      |++||+|||++|+++|.+||.+      |..||+.|||||+.|||+||+..|.+.+++.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~   59 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYV   59 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCE
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCC
Confidence            5799999999999999999975      9999999999999999999999999988654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.5e-13  Score=106.20  Aligned_cols=79  Identities=11%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             ccccccccccccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCC---hHHhhccCCCCCHHHHHHHHHHHhHhhhh
Q 021164           50 ARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHLHSLLGNR---WSQIAARLPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        50 A~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EED~~Llelv~~~G~k---W~~IAk~lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      |..+| ..+..++..++.+..++......||.|||+.||+.++++|.+   |..||+.|+|||++|||+||..|++...+
T Consensus         8 a~~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_           8 AGALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            33455 788888999999988888889999999999999999999977   99999999999999999999999987766


Q ss_pred             ccC
Q 021164          127 NLS  129 (316)
Q Consensus       127 k~~  129 (316)
                      ...
T Consensus        87 ~~e   89 (95)
T d1ug2a_          87 ACE   89 (95)
T ss_dssp             CSS
T ss_pred             hhc
Confidence            543

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=3e-13  Score=97.82  Aligned_cols=50  Identities=12%  Similarity=0.263  Sum_probs=45.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHHHH
Q 021164           71 RPDLKRGAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        71 ~p~lkk~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      .+...+.+||+|||++|+++|.+||.    +|..||++|||||+.||++||+.|
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45677889999999999999999995    599999999999999999999865

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=3.4e-13  Score=93.43  Aligned_cols=43  Identities=19%  Similarity=0.374  Sum_probs=40.6

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHH
Q 021164           78 AFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNST  120 (316)
Q Consensus        78 ~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~l  120 (316)
                      .||+|||++|+++|++|| ++|..||++|++||+.||+.||...
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5799999999999999999999864

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-13  Score=99.30  Aligned_cols=52  Identities=17%  Similarity=0.441  Sum_probs=46.7

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCC---Cccccccccccccccccccccccc
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQG---CWSDVARNAGLQRCGKSCRLRWIN   68 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~---nW~~IA~~l~~gRt~kQCr~RW~n   68 (316)
                      ...+...+++||+|||++|+++|.+||..   +|..||+.|| +||+.||+.||..
T Consensus         5 ~~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           5 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            34567778999999999999999999975   5999999998 9999999999974

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=5e-14  Score=103.10  Aligned_cols=59  Identities=19%  Similarity=0.306  Sum_probs=52.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccccCCCCCCCCCHHH
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQE   83 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~lkk~~WT~EE   83 (316)
                      ..+||+|||++|+++|..||. +|..||+.|+ +||+.||+.||.++|.+..+.+.+...+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            357999999999999999994 6999999998 9999999999999998888877766554

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.30  E-value=1.3e-12  Score=95.39  Aligned_cols=47  Identities=21%  Similarity=0.487  Sum_probs=43.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC----ChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           77 GAFSPQEEELIIHLHSLLGN----RWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~----kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      .+||+|||++|++++++||.    +|.+||.+|||||..||++||+.|++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999995    499999999999999999999877654

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.27  E-value=4e-12  Score=97.61  Aligned_cols=51  Identities=25%  Similarity=0.457  Sum_probs=45.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCC-ChHHhhcc----CCCCCHHHHHHHHHHHhHhhhhc
Q 021164           77 GAFSPQEEELIIHLHSLLGN-RWSQIAAR----LPGRTDNEIKNFWNSTIKKRLKN  127 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~-kW~~IAk~----lpgRT~~q~KnRW~~llrk~~kk  127 (316)
                      .+||.|||++|+++|.+||. +|+.|++.    +++||+.|||+||+.+++.....
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~   56 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIA   56 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccC
Confidence            38999999999999999995 89999985    68999999999999999876544

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.19  E-value=1.5e-12  Score=94.99  Aligned_cols=44  Identities=18%  Similarity=0.366  Sum_probs=40.7

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCC---ccccccccccccccccccccccc
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGC---WSDVARNAGLQRCGKSCRLRWIN   68 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~n---W~~IA~~l~~gRt~kQCr~RW~n   68 (316)
                      .+||+|||++|+++|.+||.+.   |..||..|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5799999999999999999764   999999998 9999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.3e-12  Score=92.15  Aligned_cols=48  Identities=21%  Similarity=0.115  Sum_probs=43.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHh
Q 021164           74 LKRGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTI  121 (316)
Q Consensus        74 lkk~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~ll  121 (316)
                      -...+||+||+++|++++.+||.+|..||++|||||..||+++|....
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTK   62 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999997543

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.4e-12  Score=90.98  Aligned_cols=48  Identities=15%  Similarity=0.330  Sum_probs=44.6

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhccCCCCCHHHHHHHHHHHhHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKK  123 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~lpgRT~~q~KnRW~~llrk  123 (316)
                      ...||++|+++|++++.+||.+|..||++|||||..+|+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            467999999999999999999999999999999999999999877653

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.7e-10  Score=84.12  Aligned_cols=47  Identities=19%  Similarity=0.355  Sum_probs=42.8

Q ss_pred             ccCCCHHHHHHHHHHHHHhCCCCcccccccccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L~   71 (316)
                      ..+||++||++|..++..||. +|..||+.|+ +||..||+.||.++..
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999995 5999999998 9999999999988653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.4e-10  Score=85.32  Aligned_cols=50  Identities=12%  Similarity=0.271  Sum_probs=43.8

Q ss_pred             CCCcccCCCHHHHHHHHHHHHHhCCCCccccccccccccccccccccccccc
Q 021164           19 NKLRKGLWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        19 ~~lkKg~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      ......+||+|||++|++++.+||. +|..||+.|+ +||..||+.+|....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3445578999999999999999995 6999999998 999999999997543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.1e-09  Score=84.32  Aligned_cols=54  Identities=15%  Similarity=0.306  Sum_probs=46.9

Q ss_pred             CCCCCCcccCCCHHHHHHHHHHHHHhCCCC--ccccccccccccccccccccccccc
Q 021164           16 SNGNKLRKGLWSPEEDDKLMNYMLKNGQGC--WSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        16 ~~~~~lkKg~WT~EEDe~L~~lV~kyG~~n--W~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      ...+..+...||.|||+.|+..++++|...  |..||+.|+ +|++.||+.||+..+
T Consensus        26 ~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          26 VSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             cCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            445566788899999999999999999543  999999998 999999999998754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=1e-06  Score=62.47  Aligned_cols=44  Identities=18%  Similarity=0.255  Sum_probs=40.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCChHHhhcc-CCCCCHHHHHHHHHHH
Q 021164           77 GAFSPQEEELIIHLHSLLGNRWSQIAAR-LPGRTDNEIKNFWNST  120 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G~kW~~IAk~-lpgRT~~q~KnRW~~l  120 (316)
                      ..||+||-.++.+++.+||.+|..|++. +|+||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999985 6999999999998743

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.1e-06  Score=63.05  Aligned_cols=45  Identities=16%  Similarity=0.290  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhC----CChHHhhccCCCCCHHHHHHHHHHHhH
Q 021164           77 GAFSPQEEELIIHLHSLLG----NRWSQIAARLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        77 ~~WT~EED~~Llelv~~~G----~kW~~IAk~lpgRT~~q~KnRW~~llr  122 (316)
                      ..||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..||+.+..
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e   50 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   50 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence            5799999999999999996    4699999999 9999999999986653

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=4.3e-06  Score=59.83  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=39.2

Q ss_pred             cCCCHHHHHHHHHHHHHhCC---CCccccccccccccccccccccccccc
Q 021164           24 GLWSPEEDDKLMNYMLKNGQ---GCWSDVARNAGLQRCGKSCRLRWINYL   70 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~---~nW~~IA~~l~~gRt~kQCr~RW~n~L   70 (316)
                      ..||++|+.+|.+++.+|..   ..|..||+.+  ||+..+|..||...-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v--gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH--CCCHHHHHHHHHHHH
Confidence            47999999999999999974   3599999998  599999999997543

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=1.5e-05  Score=56.23  Aligned_cols=42  Identities=17%  Similarity=0.170  Sum_probs=37.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cccccccccccccccc
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARN-AGLQRCGKSCRLRWIN   68 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~-l~~gRt~kQCr~RW~n   68 (316)
                      .||+||-+++.+++..||. +|..||+. +| +|+..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5999999999999999996 59999985 56 9999999998754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=7.5e-05  Score=53.18  Aligned_cols=47  Identities=17%  Similarity=0.309  Sum_probs=40.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhC--------CC-hHHhhc-cCCCCCHHHHHHHHHHHhH
Q 021164           76 RGAFSPQEEELIIHLHSLLG--------NR-WSQIAA-RLPGRTDNEIKNFWNSTIK  122 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G--------~k-W~~IAk-~lpgRT~~q~KnRW~~llr  122 (316)
                      +.+||.|||+.|++.|.++.        ++ |.++++ .+|.+|-.+.|+||...||
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            57999999999999999873        33 999996 6899999999999987664

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=0.00019  Score=48.31  Aligned_cols=46  Identities=24%  Similarity=0.483  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCChHHhhcc--C-CCCCHHHHHHHHHHHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRWSQIAAR--L-PGRTDNEIKNFWNSTI  121 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW~~IAk~--l-pgRT~~q~KnRW~~ll  121 (316)
                      +..||+||-.-|+..|+++|+.|..|-=.  | |||+..++..+|..++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            35799999999999999999999999543  3 9999999999998764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.98  E-value=0.00079  Score=48.43  Aligned_cols=46  Identities=11%  Similarity=0.079  Sum_probs=38.7

Q ss_pred             CCCCCHHHHHHHHHHHHHhCCCh---HHhhcc--CCCCCHHHHHHHHHHHh
Q 021164           76 RGAFSPQEEELIIHLHSLLGNRW---SQIAAR--LPGRTDNEIKNFWNSTI  121 (316)
Q Consensus        76 k~~WT~EED~~Llelv~~~G~kW---~~IAk~--lpgRT~~q~KnRW~~ll  121 (316)
                      +-.||+||.++.++++.+||..|   ..|...  ++++|..+|+.+...+.
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            45799999999999999999887   467665  59999999999876553

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00056  Score=48.49  Aligned_cols=48  Identities=19%  Similarity=0.425  Sum_probs=39.4

Q ss_pred             ccCCCHHHHHHHHHHHHHhCC--------CCcccccc-cccccccccccccccccccc
Q 021164           23 KGLWSPEEDDKLMNYMLKNGQ--------GCWSDVAR-NAGLQRCGKSCRLRWINYLR   71 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG~--------~nW~~IA~-~l~~gRt~kQCr~RW~n~L~   71 (316)
                      +.+||.|||+.|++.|.++..        .=|..+++ .++ .+|-.+-|+||..+|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            568999999999999999842        23999985 465 7888889999998874

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.05  E-value=0.0014  Score=47.07  Aligned_cols=50  Identities=12%  Similarity=0.114  Sum_probs=37.5

Q ss_pred             CCcccCCCHHHHHHHHHHHHHhCCCCc--cccccccc-ccccccccccccccc
Q 021164           20 KLRKGLWSPEEDDKLMNYMLKNGQGCW--SDVARNAG-LQRCGKSCRLRWINY   69 (316)
Q Consensus        20 ~lkKg~WT~EEDe~L~~lV~kyG~~nW--~~IA~~l~-~gRt~kQCr~RW~n~   69 (316)
                      +..+-.||+||.++++.+|..+|...|  ..|.+.|. +++|..||+-+.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            334567999999999999999997644  35655542 278999998776554

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.021  Score=41.38  Aligned_cols=50  Identities=16%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCC----hHHhhccCCCCCHHHHHHHHHHHhHhh
Q 021164           75 KRGAFSPQEEELIIHLHSLLGNR----WSQIAARLPGRTDNEIKNFWNSTIKKR  124 (316)
Q Consensus        75 kk~~WT~EED~~Llelv~~~G~k----W~~IAk~lpgRT~~q~KnRW~~llrk~  124 (316)
                      ..+.|+++|-++|-.++..+...    |..+|..+..||...|..+|..-++.+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccc
Confidence            45689999999999999998743    999999999999999999998766544

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0065  Score=44.16  Aligned_cols=50  Identities=26%  Similarity=0.486  Sum_probs=42.7

Q ss_pred             ccCCCHHHHHHHHHHHHHhC---CCCccccccccccccccccccccccccccCC
Q 021164           23 KGLWSPEEDDKLMNYMLKNG---QGCWSDVARNAGLQRCGKSCRLRWINYLRPD   73 (316)
Q Consensus        23 Kg~WT~EEDe~L~~lV~kyG---~~nW~~IA~~l~~gRt~kQCr~RW~n~L~p~   73 (316)
                      -+.|+++|-++|-.++.-..   .+-|..||..++ +|++..|...|...+...
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~~   60 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRGK   60 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCcccc
Confidence            36799999999999988754   456999999999 999999999998876543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.64  E-value=0.53  Score=31.85  Aligned_cols=44  Identities=18%  Similarity=0.296  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHHhC-CChHHhhccCCCCCHHHHHHHHHHHh
Q 021164           78 AFSPQEEELIIHLHSLLG-NRWSQIAARLPGRTDNEIKNFWNSTI  121 (316)
Q Consensus        78 ~WT~EED~~Llelv~~~G-~kW~~IAk~lpgRT~~q~KnRW~~ll  121 (316)
                      .|+.-|=+.++.+..+|| .+-..||..|.|+|...|+.-.+..-
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~vFw   45 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFW   45 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            499999999999999999 58999999999999999977544433

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.71  E-value=0.092  Score=34.85  Aligned_cols=44  Identities=14%  Similarity=0.176  Sum_probs=35.3

Q ss_pred             cCCCHHHHHHHHHHHHHhCCCCcccccccc--ccccccccccccccc
Q 021164           24 GLWSPEEDDKLMNYMLKNGQGCWSDVARNA--GLQRCGKSCRLRWIN   68 (316)
Q Consensus        24 g~WT~EEDe~L~~lV~kyG~~nW~~IA~~l--~~gRt~kQCr~RW~n   68 (316)
                      .-||.||=.-|...|+++|.. |..|--.+  .+||+......+|++
T Consensus         2 knft~eEv~YL~~GVK~~G~~-WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMGNH-WNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC-HHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhcch-hhhhhhccCCCCCchhhHHHHHHHh
Confidence            469999999999999999976 99997544  358887777666654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.58  E-value=0.45  Score=37.84  Aligned_cols=55  Identities=18%  Similarity=0.329  Sum_probs=43.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHhC-CC---hHHhhcc------------CCCCCHHHHHHHHHHHhHhhhh
Q 021164           72 PDLKRGAFSPQEEELIIHLHSLLG-NR---WSQIAAR------------LPGRTDNEIKNFWNSTIKKRLK  126 (316)
Q Consensus        72 p~lkk~~WT~EED~~Llelv~~~G-~k---W~~IAk~------------lpgRT~~q~KnRW~~llrk~~k  126 (316)
                      +..++..+|+|||..||-.+.+|| .+   |..|-..            |..||+..+..|-..|++--.+
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            345666899999999999999999 44   8887321            2569999999999988875443

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.67  E-value=0.41  Score=32.42  Aligned_cols=38  Identities=11%  Similarity=0.267  Sum_probs=33.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccccccccccccc
Q 021164           25 LWSPEEDDKLMNYMLKNGQGCWSDVARNAGLQRCGKSCR   63 (316)
Q Consensus        25 ~WT~EEDe~L~~lV~kyG~~nW~~IA~~l~~gRt~kQCr   63 (316)
                      .|+..|=+.++++..+||..+-..||..|. +++...++
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~-~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhc-CCCHHHHH
Confidence            399999999999999999988999999997 78877754