Citrus Sinensis ID: 021166

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
ccccEEEHHHccccccEEEEEEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEccHHHHHHHHHHHcccccccccccccccHHHHHHHHccccccccccHHHHcccccccccEEEccccccccccHHHHHHHHHHHHHcccccEEEEEEEEcccccccccccccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHccccccccccccccccccccccc
ccccEEEEEEccccccEEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEEcccHHHHHHHHHHHccHccccccccHEHHHHHHEHEHccccccccccHHHHcccccccHHHccccccccccccHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHHc
MGEDLFWAIrgsggssfgIIVSWKIKlvavpptvtvfavPRTLEQNATRLLHKWQYIADRvhedlfispflyrenstMVCLFTSlflggvdrllplmqqsfpelgltkedcreMSFIESIVYLdgfkiresinadVLINERFVKRFfigkadfvtvpipvealegaydlfyeedprtygllvffpyggkmseiseseipfphragnIYTLLYYAEWQDATDEAYQRHLNMVRKLFNymtpyvtknpraayinnrdldigtnnklghtsVQEASVWGKKYFKNNFYRLVQVKTmvdpedffrneqsippfnlmkdel
MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEdffrneqsippfnlmkdel
MGEDLFWAirgsggssfgiivsWKIKLvavpptvtvfavpRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
****LFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFF****************
MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPF*******
MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
**EDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMK*EL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADRVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIPPFNLMKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.968 0.561 0.472 6e-79
A6P6V9544 Cannabidiolic acid syntha N/A no 0.965 0.560 0.478 1e-78
A6P6W1545 Cannabidiolic acid syntha N/A no 0.974 0.565 0.462 3e-78
A6P6W0545 Cannabidiolic acid syntha N/A no 0.974 0.565 0.459 9e-78
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.968 0.561 0.462 2e-77
Q9SVG4570 Reticuline oxidase-like p no no 0.955 0.529 0.403 2e-59
P93479535 Reticuline oxidase OS=Pap N/A no 0.955 0.564 0.380 5e-55
P30986538 Reticuline oxidase OS=Esc N/A no 0.955 0.561 0.370 1e-51
O06997447 Uncharacterized FAD-linke yes no 0.860 0.608 0.290 1e-15
P08159458 6-hydroxy-D-nicotine oxid N/A no 0.841 0.580 0.234 7e-06
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function desciption
 Score =  294 bits (753), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 206/322 (63%), Gaps = 16/322 (4%)

Query: 1   MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLE-QNATRLLHKWQYIAD 59
           MGEDLFWAIRG GG +FGII +WKIKLVAVP   T+F+V + +E     +L +KWQ IA 
Sbjct: 222 MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAY 281

Query: 60  RVHEDLFISPFLYREN---------STMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKED 110
           +  +DL +      +N         +T+   F+S+F GGVD L+ LM +SFPELG+ K D
Sbjct: 282 KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD 341

Query: 111 CREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR-FFIGKADFVTVPIPVEALEGAY 167
           C+E S+I++ ++  G     + N   ++L++    K+  F  K D+V  PIP  A+    
Sbjct: 342 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKIL 401

Query: 168 DLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRH 227
           +  YEED    G+ V +PYGG M EISES IPFPHRAG +Y L Y A W+   D   ++H
Sbjct: 402 EKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN--EKH 458

Query: 228 LNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRL 287
           +N VR ++N+ TPYV++NPR AY+N RDLD+G  N     +  +A +WG+KYF  NF RL
Sbjct: 459 INWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRL 518

Query: 288 VQVKTMVDPEDFFRNEQSIPPF 309
           V+VKT VDP +FFRNEQSIPP 
Sbjct: 519 VKVKTKVDPNNFFRNEQSIPPL 540
Catalyzes the oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing delta(9)-tetrahydrocannabinolate (THCA), the major cannabioid in drug-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 7
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|P08159|HDNO_ARTOX 6-hydroxy-D-nicotine oxidase OS=Arthrobacter oxidans PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
224115242 527 predicted protein [Populus trichocarpa] 0.971 0.582 0.586 1e-106
224122382 534 predicted protein [Populus trichocarpa] 0.971 0.574 0.572 1e-105
356510754 538 PREDICTED: reticuline oxidase-like prote 0.968 0.568 0.582 1e-100
224122390 501 predicted protein [Populus trichocarpa] 0.971 0.612 0.574 1e-100
358348153 543 Reticuline oxidase [Medicago truncatula] 0.962 0.559 0.584 1e-100
224056831 533 predicted protein [Populus trichocarpa] 0.968 0.574 0.575 1e-100
224103509 531 predicted protein [Populus trichocarpa] 0.968 0.576 0.586 2e-99
359483744 538 PREDICTED: LOW QUALITY PROTEIN: reticuli 0.977 0.574 0.583 2e-99
224110866 533 predicted protein [Populus trichocarpa] 0.974 0.577 0.569 4e-99
224122386 533 predicted protein [Populus trichocarpa] 0.968 0.574 0.572 4e-99
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/319 (58%), Positives = 242/319 (75%), Gaps = 12/319 (3%)

Query: 1   MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLEQNATRLLHKWQYIADR 60
           MGEDLFWAIRG GG++FG++++WKI LV+ PPTVTVF V RTLEQNA++L+H+WQ++AD+
Sbjct: 210 MGEDLFWAIRGGGGNTFGVVIAWKISLVSAPPTVTVFNVQRTLEQNASKLVHRWQFVADK 269

Query: 61  VHEDLFISPFLYRENST--------MVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCR 112
           +HEDLFI   L R NST        +   F SLFLGG+DRLLPL+Q SFPELGL KEDC 
Sbjct: 270 LHEDLFIRIILNRVNSTEEGKSNTTIQASFNSLFLGGIDRLLPLIQDSFPELGLVKEDCI 329

Query: 113 EMSFIESIVYLDGFKIRESINADVLINER-FVKRFFIGKADFVTVPIPVEALEGAYDLFY 171
           EMS+I+S++Y DGF    S+  DVL++     +R F  K+D+V  PIP   LEG ++ F+
Sbjct: 330 EMSWIQSVLYFDGFPSNSSL--DVLLDRTPSTRRNFKAKSDYVKEPIPELGLEGIWERFF 387

Query: 172 EEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMV 231
           ++D  T  +L+F PYGGKMSEISES IPFPHRAGNIY + +   W +    A +RH++ +
Sbjct: 388 DKDINT-PILIFSPYGGKMSEISESSIPFPHRAGNIYKIQHLIYWDEEGIVATKRHISWI 446

Query: 232 RKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVK 291
           R+L++Y+ PYV+K PRAAY+N RDLDIG NN  G+TS ++AS+WG KYFKNNF RLV+VK
Sbjct: 447 RRLYSYLAPYVSKTPRAAYVNYRDLDIGINNHAGNTSYRQASIWGLKYFKNNFDRLVRVK 506

Query: 292 TMVDPEDFFRNEQSIPPFN 310
           T VDP +FFRNEQSIPP +
Sbjct: 507 TAVDPANFFRNEQSIPPLS 525

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356510754|ref|XP_003524099.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|224122390|ref|XP_002330611.1| predicted protein [Populus trichocarpa] gi|222872169|gb|EEF09300.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|358348153|ref|XP_003638113.1| Reticuline oxidase [Medicago truncatula] gi|355504048|gb|AES85251.1| Reticuline oxidase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359483744|ref|XP_003633009.1| PREDICTED: LOW QUALITY PROTEIN: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.939 0.558 0.458 1.3e-68
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.958 0.564 0.442 7.2e-68
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.958 0.559 0.429 1.2e-65
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.971 0.575 0.439 1.2e-65
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.936 0.554 0.438 1.5e-65
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.952 0.567 0.429 6.7e-65
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.962 0.561 0.428 1.2e-63
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.971 0.573 0.433 1.2e-63
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.955 0.567 0.411 1.4e-62
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.968 0.575 0.415 2.1e-61
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
 Identities = 144/314 (45%), Positives = 198/314 (63%)

Query:     1 MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLEQNATRLLHKWQYIADR 60
             MGED+FWA              WKIKL             +TLEQ+ T++L+KW+ IAD+
Sbjct:   225 MGEDVFWAIRGGGGGSFGVILAWKIKLVPVPATVTVFTVTKTLEQDGTKVLYKWEQIADK 284

Query:    61 VHEDLFI----SPFLYRE---NSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCRE 113
             + +DLFI    SP        N T+   + + FLG  +RLL +MQ+SFPELGLTK+DC E
Sbjct:   285 LDDDLFIRVIISPASKTTKPGNRTISMSYQAQFLGDSNRLLQVMQKSFPELGLTKKDCTE 344

Query:   114 MSFIESIVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEE 173
             MS+I+S++Y+ GF    +  A +L  +   K  F  K+DFV  PIPVE LEG ++ F EE
Sbjct:   345 MSWIKSVMYIAGFPNSAAPEA-LLAGKSLFKNHFKAKSDFVKEPIPVEGLEGLWERFLEE 403

Query:   174 DPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRK 233
             D     L ++ PYGG MS ISESEIPFPHR G ++ + + + WQD    + +RH+  +R+
Sbjct:   404 DSP---LTIWNPYGGMMSRISESEIPFPHRNGTLFKIQWLSTWQDGK-VSEERHMKWIRE 459

Query:   234 LFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTM 293
             +++YM  YV+KNPR AY+N RDLD+GTN   G T  +E   WG KY+K NF RLV++K  
Sbjct:   460 MYSYMEQYVSKNPRQAYVNYRDLDLGTNE--GETDARE---WGAKYYKGNFERLVKIKGE 514

Query:   294 VDPEDFFRNEQSIP 307
              DP++FFR+EQS+P
Sbjct:   515 FDPDNFFRHEQSVP 528
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010197 "polar nucleus fusion" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0007155 "cell adhesion" evidence=RCA
GO:0010090 "trichome morphogenesis" evidence=RCA
GO:0045010 "actin nucleation" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.202.20.1
hypothetical protein (503 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-15
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-04
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information 
 Score = 69.5 bits (171), Expect = 1e-15
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 14/59 (23%)

Query: 249 AYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP 307
           AY+N  DLD+G               WG+ YF  N+ RL +VK   DP++ FRNEQSIP
Sbjct: 1   AYVNYPDLDLG--------------DWGEAYFGGNYERLRKVKAKYDPDNVFRNEQSIP 45

This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. Length = 45
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.68
PLN02441525 cytokinin dehydrogenase 99.67
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 98.91
KOG1231505 consensus Proteins containing the FAD binding doma 98.46
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 98.19
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 98.12
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 98.12
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 98.07
PLN02805555 D-lactate dehydrogenase [cytochrome] 97.9
PRK11230499 glycolate oxidase subunit GlcD; Provisional 97.75
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 97.75
PLN02465573 L-galactono-1,4-lactone dehydrogenase 97.47
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 97.36
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 97.07
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 94.6
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 92.76
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 91.42
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 83.84
PLN02805555 D-lactate dehydrogenase [cytochrome] 83.43
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 82.73
PLN00107257 FAD-dependent oxidoreductase; Provisional 81.44
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 81.3
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information 
Probab=99.68  E-value=1.7e-17  Score=106.28  Aligned_cols=47  Identities=40%  Similarity=0.752  Sum_probs=34.6

Q ss_pred             eeccCCCCCCCCCCCCCCcchhhhchhhHhhhhccHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166          249 AYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP  307 (316)
Q Consensus       249 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~  307 (316)
                      +|+||+|.+++            .++|.+.|||+|++||++||++|||+|||+++|+||
T Consensus         1 aY~Ny~d~~~~------------~~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~   47 (47)
T PF08031_consen    1 AYVNYPDPDLP------------GDDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP   47 (47)
T ss_dssp             --TTS--GGGG------------SSHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred             CcccCCCCccc------------hhHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence            59999988764            137999999999999999999999999999999996

They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-66
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 3e-52
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 2e-51
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-44
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-44
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-44
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 3e-44
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-44
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-44
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 3e-44
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 5e-08
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-06
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 4e-06
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 7e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 136/322 (42%), Positives = 186/322 (57%), Gaps = 16/322 (4%)
Query: 1   MGEDLFWAXXXXXXXXXXXXXXWKIKLXXXXXXXXXXXXXRTLE-QNATRLLHKWQYIAD 59
           MGEDLFWA              WKIKL             + +E     +L +KWQ IA 
Sbjct: 195 MGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAY 254
Query: 60  RVHEDLFISPFLYREN---------STMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKED 110
           +  +DL +      +N         +T+   F+S+F GGVD L+ LM +SFPELG+ K D
Sbjct: 255 KYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTD 314
Query: 111 CREMSFIESIVYLDGFKIRESIN--ADVLINERFVKR-FFIGKADFVTVPIPVEALEGAY 167
           C+E S+I++ ++  G     + N   ++L++    K+  F  K D+V  PIP  A+    
Sbjct: 315 CKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKIL 374
Query: 168 DLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRH 227
           +  YEED    G+ V +PYGG M EISES IPFPHRAG +Y L Y A W+   D   ++H
Sbjct: 375 EKLYEEDVGA-GMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQEDN--EKH 431
Query: 228 LNMVRKLFNYMTPYVTKNPRAAYINNRDLDIGTNNKLGHTSVQEASVWGKKYFKNNFYRL 287
           +N VR ++N+ TPYV++NPR AY+N RDLD+G  N     +  +A +WG+KYF  NF RL
Sbjct: 432 INWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRL 491
Query: 288 VQVKTMVDPEDFFRNEQSIPPF 309
           V+VKT VDP +FFRNEQSIPP 
Sbjct: 492 VKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-108
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 1e-108
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-90
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 3e-90
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 9e-90
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 3e-89
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 4e-87
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 9e-84
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-60
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 3e-13
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 1e-09
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
 Score =  323 bits (830), Expect = e-108
 Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 11/313 (3%)

Query: 1   MGEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLE-QNATRLLHKWQYIAD 59
           MGED+FWAIRG GG  +G I +WKIKL+ VP  VTVF V + +    AT LLHKWQ++A+
Sbjct: 187 MGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQFVAE 246

Query: 60  RVHEDLFISPFLYRENSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIES 119
            + ED  +S     +   +         G            FPELGL +ED  EMS+ ES
Sbjct: 247 ELEEDFTLSVLGGADEKQVWLTMLGFHFGLKTVAKSTFDLLFPELGLVEEDYLEMSWGES 306

Query: 120 IVYLDGFKIRESINADVLINERFVKRFFIGKADFVTVPIPVEALEGAYDLFYEEDPRTYG 179
             YL G +    +N       +F +R F  K D    P+P +A  G  +   +E     G
Sbjct: 307 FAYLAGLETVSQLNNR---FLKFDERAFKTKVDLTKEPLPSKAFYGLLERLSKEPN---G 360

Query: 180 LLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHLNMVRKLFNYMT 239
            +    +GG+MS+IS    PFPHR+G    + Y   W  +  +     L+ + K++ +M 
Sbjct: 361 FIALNGFGGQMSKISSDFTPFPHRSGTRLMVEYIVAWNQSEQKKKTEFLDWLEKVYEFMK 420

Query: 240 PYVTKNPRAAYINNRDLDIGTNN----KLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVD 295
           P+V+KNPR  Y+N+ DLD+G  +     + + +++ +  WG+ YF +N+ RL++ KT++D
Sbjct: 421 PFVSKNPRLGYVNHIDLDLGGIDWGNKTVVNNAIEISRSWGESYFLSNYERLIRAKTLID 480

Query: 296 PEDFFRNEQSIPP 308
           P + F + QSIPP
Sbjct: 481 PNNVFNHPQSIPP 493
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 99.63
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 99.09
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 98.94
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 98.73
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 98.72
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 98.41
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 98.05
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 97.96
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 97.65
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 97.37
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 97.14
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 95.67
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 94.87
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 94.86
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 94.65
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 91.66
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 89.94
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 87.09
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 80.69
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.3e-52  Score=400.19  Aligned_cols=305  Identities=49%  Similarity=0.911  Sum_probs=249.5

Q ss_pred             CccchhhhhCCCCCceEEEEEEEEEeeecCCeEEEEEEecccc-hhHHHHHHHHHHHhhcccccceEEEEEeec------
Q 021166            2 GEDLFWAIRGSGGSSFGIIVSWKIKLVAVPPTVTVFAVPRTLE-QNATRLLHKWQYIADRVHEDLFISPFLYRE------   74 (316)
Q Consensus         2 n~DLFWAlRGgGg~nFGVVT~~~~k~~p~~~~~~~~~~~~~~~-~~~~~vl~~~~~~~~~~~~~l~~~~~~~~~------   74 (316)
                      |+|||||+||||+|+|||||+++||++|.|+.+..+.+.+.++ +++.+++.+|+++...+|+++++.+.+...      
T Consensus       196 ~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~  275 (518)
T 3vte_A          196 GEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNH  275 (518)
T ss_dssp             CHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC---
T ss_pred             ccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCC
Confidence            7899999999978999999999999999998777788877654 458899999999999999999988876631      


Q ss_pred             ---CCeeEEEEEEEEecChhchhhHhhhhcCCCCCCccccccccHHHHHHHhhcccCc-ccc-ccccccccccc-cccee
Q 021166           75 ---NSTMVCLFTSLFLGGVDRLLPLMQQSFPELGLTKEDCREMSFIESIVYLDGFKIR-ESI-NADVLINERFV-KRFFI  148 (316)
Q Consensus        75 ---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~-~~~~~  148 (316)
                         ++.+.+.+.++|+|+.+++.+.|++++++++.....+.++||.+.+.++.++..+ .+. +++.+++..++ ..+||
T Consensus       276 ~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k  355 (518)
T 3vte_A          276 GKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFS  355 (518)
T ss_dssp             ----CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEE
T ss_pred             CcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchhhhhccCCcCccccee
Confidence               1345688889999999999999998777877666778899999988777654322 110 01334433222 34678


Q ss_pred             eecccccCCCCHHHHHHHHHHHhcCCCCceeEEEEEecCccccccCCCCCCcccccCceEEEEEEEEecCCChHHHHHHH
Q 021166          149 GKADFVTVPIPVEALEGAYDLFYEEDPRTYGLLVFFPYGGKMSEISESEIPFPHRAGNIYTLLYYAEWQDATDEAYQRHL  228 (316)
Q Consensus       149 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~ta~~~R~~~~~~~~~~~~w~~~~~~~~~~~~  228 (316)
                      .+|.++.+++++++++.+++.+.+.+.. .+.+.+.++||++++++.++|||+||++..|.+++.+.|.++.  .++++.
T Consensus       356 ~ks~~~~~~l~~~~i~~l~~~~~~~~~~-~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~--~~~~~~  432 (518)
T 3vte_A          356 IKLDYVKKPIPETAMVKILEKLYEEDVG-AGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQE--DNEKHI  432 (518)
T ss_dssp             EEEEEESSCCCHHHHHHHHHGGGGSCTT-TEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTT--THHHHH
T ss_pred             eechhcccCCCHHHHHHHHHHHHhCCCC-CeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcc--hhHHHH
Confidence            8999998789999999999988765443 3789999999999999999999999993489999999998765  367889


Q ss_pred             HHHHHHHHhccccCCCCCCceeccCCCCCCC-CCCCCCCcchhhhchhhHhhhhccHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166          229 NMVRKLFNYMTPYVTKNPRAAYINNRDLDIG-TNNKLGHTSVQEASVWGKKYFKNNFYRLVQVKTMVDPEDFFRNEQSIP  307 (316)
Q Consensus       229 ~~~~~~~~~l~~~~~~~~~~~Y~Ny~d~~~~-~~~~~~~~~~~~~~~~~~~y~g~n~~rL~~iK~kyDP~~vF~~~~~i~  307 (316)
                      +|++++++.|.|+....++++|+||.|.+++ .+ ++++++|+.++.|++.|||+||+||++||+||||+|||+++|+|+
T Consensus       433 ~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~-~~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~  511 (518)
T 3vte_A          433 NWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTN-HASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIP  511 (518)
T ss_dssp             HHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCC-TTSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCC
T ss_pred             HHHHHHHHHhccccCCCCccccccCCCccccccc-cccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCC
Confidence            9999999999999765567999999998765 21 135677888889999999999999999999999999999999999


Q ss_pred             CCC
Q 021166          308 PFN  310 (316)
Q Consensus       308 ~~~  310 (316)
                      |..
T Consensus       512 p~~  514 (518)
T 3vte_A          512 PLP  514 (518)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            853
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 5e-05
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 2   GEDLFWAIRGSGGSSFGIIVSWKIKLV 28
             DLF A+ G  G  FG+I   +I + 
Sbjct: 179 NADLFDAVLGGLG-QFGVITRARIAVE 204

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 96.28
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 91.14
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 87.09
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.28  E-value=0.017  Score=47.99  Aligned_cols=34  Identities=29%  Similarity=0.516  Sum_probs=29.7

Q ss_pred             chhhHhhhhc-cHHHHHHhhhhcCCCCCCCCCCCCC
Q 021166          273 SVWGKKYFKN-NFYRLVQVKTMVDPEDFFRNEQSIP  307 (316)
Q Consensus       273 ~~~~~~y~g~-n~~rL~~iK~kyDP~~vF~~~~~i~  307 (316)
                      ++|.+ -||+ .+++.++.|++|||..++.-.|.|.
T Consensus       254 ~dW~~-HFG~~kW~~F~~~K~~yDP~~ILsPGQ~IF  288 (289)
T d1w1oa1         254 SDWVR-HFGAAKWNRFVEMKNKYDPKRLLSPGQDIF  288 (289)
T ss_dssp             HHHHH-HHCHHHHHHHHHHHHHHCTTCCBCGGGCSC
T ss_pred             HHHHH-HcCcchHHHHHHHHhhCCcccccCCCCccC
Confidence            48965 6695 7999999999999999999999885
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure