Citrus Sinensis ID: 021171

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
MAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN
ccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHcccccHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHcccccccccHHHHHHHHHHccccccccEEccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHcccccccHHHHcccccHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccccccc
cHHHHHHHHHHHHHHHcccccccEccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccEcccHHHcccccccccHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccccccEccEEcccccHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHccEEEHHHcHHHcccccHccHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHccccccHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHcccccEcccccEcccEccEccc
MAYRGIFHVVLILAFAATAfstlspcyydkvcpealPTIKRIVEAAVEKEGRMGASLLRLHFHdcfvqgcdasillddtstidseknaipnnnsvrgFEVIDLIKKELDKvckrpvvscADILAVAARDSVvalggptwkvplgrrdsttanrtlanndipspflnLTGLISSFrrqglnetdlvalsgghtigfARCSAFRNRiynatnidpdfakerqrtcpstggdsnlapfdptpltfdgKYFSSLLQKRGllisdqalfnggstdglVKTYSLNFKAFSADFANSMIKMgninvltgnkgqirsncrrlnn
MAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSeknaipnnnsvrgFEVIDLIKKELDKVCKRPVVSCADILAVAARdsvvalggptwkvplgrrdSTTANrtlanndipspfLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNatnidpdfakERQRTCpstggdsnlapfDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNInvltgnkgqirsncrrlnn
MAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN
**YRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTID***NAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRD*TTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDF*********************PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGN*************
**YRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCP***G*SNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRL**
MAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN
*AYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNA*PNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRR***
iiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAYRGIFHVVLILAFAATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query316 2.2.26 [Sep-21-2011]
P22195316 Cationic peroxidase 1 OS= N/A no 0.924 0.924 0.636 1e-104
A7NY33321 Peroxidase 4 OS=Vitis vin no no 0.993 0.978 0.574 1e-99
A5H452321 Peroxidase 70 OS=Zea mays N/A no 0.917 0.903 0.605 4e-99
Q02200322 Lignin-forming anionic pe N/A no 0.984 0.965 0.569 5e-95
Q0D3N0314 Peroxidase 2 OS=Oryza sat no no 0.895 0.901 0.592 1e-94
A2YPX3314 Peroxidase 2 OS=Oryza sat N/A no 0.895 0.901 0.592 2e-94
Q9FLC0324 Peroxidase 52 OS=Arabidop yes no 0.924 0.901 0.587 3e-94
Q9LVL1325 Peroxidase 68 OS=Arabidop no no 0.984 0.956 0.567 2e-91
P00434296 Peroxidase P7 OS=Brassica N/A no 0.924 0.986 0.567 2e-90
Q9M9Q9321 Peroxidase 5 OS=Arabidops no no 0.990 0.975 0.531 2e-89
>sp|P22195|PER1_ARAHY Cationic peroxidase 1 OS=Arachis hypogaea GN=PNC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 220/294 (74%), Gaps = 2/294 (0%)

Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           LS  +Y   CP AL TIK  V +AV KE RMGASLLRLHFHDCFVQGCDAS+LLDDTS  
Sbjct: 24  LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 83

Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
             EK A PN NS+RGFEVID IK +++ +C   VVSCADILAVAARDSVVALGG +W V 
Sbjct: 84  TGEKTAGPNANSIRGFEVIDTIKSQVESLCPG-VVSCADILAVAARDSVVALGGASWNVL 142

Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGRRDSTTA+ + AN+D+P+PF NL+GLIS+F  +G    +LV LSG HTIG A+C+AFR
Sbjct: 143 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 202

Query: 203 NRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQ 261
            RIYN +NIDP +AK  Q  CPS GGD+NL+PFD  TP  FD  Y+ +L  K+GLL SDQ
Sbjct: 203 TRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQ 262

Query: 262 ALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
            LFNG STD  V  YS N   F+ DF N+MIKMGN++ LTG  GQIR+NCR+ N
Sbjct: 263 QLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 316
Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress. These functions might be dependent on each isozyme/isoform in each plant tissue.
Arachis hypogaea (taxid: 3818)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 7
>sp|A7NY33|PER4_VITVI Peroxidase 4 OS=Vitis vinifera GN=GSVIVT00023967001 PE=1 SV=1 Back     alignment and function description
>sp|A5H452|PER70_MAIZE Peroxidase 70 OS=Zea mays GN=PER70 PE=1 SV=1 Back     alignment and function description
>sp|Q02200|PERX_NICSY Lignin-forming anionic peroxidase OS=Nicotiana sylvestris PE=2 SV=1 Back     alignment and function description
>sp|Q0D3N0|PER2_ORYSJ Peroxidase 2 OS=Oryza sativa subsp. japonica GN=PRX112 PE=2 SV=1 Back     alignment and function description
>sp|A2YPX3|PER2_ORYSI Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2 Back     alignment and function description
>sp|Q9FLC0|PER52_ARATH Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVL1|PER68_ARATH Peroxidase 68 OS=Arabidopsis thaliana GN=PER68 PE=2 SV=1 Back     alignment and function description
>sp|P00434|PERP7_BRARA Peroxidase P7 OS=Brassica rapa PE=1 SV=3 Back     alignment and function description
>sp|Q9M9Q9|PER5_ARATH Peroxidase 5 OS=Arabidopsis thaliana GN=PER5 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
224139322293 predicted protein [Populus trichocarpa] 0.927 1.0 0.757 1e-128
224087839321 predicted protein [Populus trichocarpa] 0.996 0.981 0.713 1e-128
225439627318 PREDICTED: cationic peroxidase 1 [Vitis 0.996 0.990 0.704 1e-126
255581003323 Peroxidase 2 precursor, putative [Ricinu 0.974 0.953 0.715 1e-125
224139324321 predicted protein [Populus trichocarpa] 0.996 0.981 0.691 1e-123
356496287319 PREDICTED: cationic peroxidase 1-like is 0.996 0.987 0.673 1e-120
255581005319 Cationic peroxidase 1 precursor, putativ 0.933 0.924 0.689 1e-119
356506696319 PREDICTED: cationic peroxidase 1-like [G 0.996 0.987 0.664 1e-118
356506688319 PREDICTED: cationic peroxidase 1-like [G 0.996 0.987 0.664 1e-118
356496289313 PREDICTED: cationic peroxidase 1-like is 0.939 0.948 0.696 1e-117
>gi|224139322|ref|XP_002323055.1| predicted protein [Populus trichocarpa] gi|222867685|gb|EEF04816.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 222/293 (75%), Positives = 252/293 (86%)

Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           LSP YY+ VCP+AL TIKR+VEAAV KE RMGASLLRLHFHDCFV GCDASILLD TSTI
Sbjct: 1   LSPYYYNHVCPKALATIKRVVEAAVYKERRMGASLLRLHFHDCFVNGCDASILLDSTSTI 60

Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
           DSEKNA+PN NS+RGFEVID +K E+DK+C RPVVSCADI+AVAARDSVVALGGPTW V 
Sbjct: 61  DSEKNALPNINSLRGFEVIDQVKSEVDKICGRPVVSCADIVAVAARDSVVALGGPTWAVQ 120

Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGR+DS TA+R  ANND+PSPF++L  LI++F+RQGLNE DLVALSGGHT+G A+C  FR
Sbjct: 121 LGRKDSNTASRDKANNDLPSPFMDLPALINNFKRQGLNERDLVALSGGHTLGSAQCFTFR 180

Query: 203 NRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDPTPLTFDGKYFSSLLQKRGLLISDQA 262
           NRI+N TNIDP F K+R+ TCP  GGDSNLAP DPTP  FD  YF+SL++KRGLL SDQA
Sbjct: 181 NRIHNETNIDPKFVKQRKPTCPLVGGDSNLAPLDPTPAHFDVAYFNSLVKKRGLLRSDQA 240

Query: 263 LFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
           LFNGGSTDGLVK YS N KAF ADFA SM+KMGNINVLTG +GQ+R NCR++N
Sbjct: 241 LFNGGSTDGLVKAYSSNAKAFWADFAKSMVKMGNINVLTGKQGQVRLNCRKVN 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224087839|ref|XP_002308244.1| predicted protein [Populus trichocarpa] gi|222854220|gb|EEE91767.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439627|ref|XP_002268412.1| PREDICTED: cationic peroxidase 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581003|ref|XP_002531319.1| Peroxidase 2 precursor, putative [Ricinus communis] gi|223529087|gb|EEF31069.1| Peroxidase 2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224139324|ref|XP_002323056.1| predicted protein [Populus trichocarpa] gi|222867686|gb|EEF04817.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356496287|ref|XP_003517000.1| PREDICTED: cationic peroxidase 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|255581005|ref|XP_002531320.1| Cationic peroxidase 1 precursor, putative [Ricinus communis] gi|223529088|gb|EEF31070.1| Cationic peroxidase 1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356506696|ref|XP_003522112.1| PREDICTED: cationic peroxidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356506688|ref|XP_003522108.1| PREDICTED: cationic peroxidase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356496289|ref|XP_003517001.1| PREDICTED: cationic peroxidase 1-like isoform 2 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query316
TAIR|locus:2153529324 PRX52 "peroxidase 52" [Arabido 0.924 0.901 0.587 7.7e-87
TAIR|locus:2161193325 AT5G58400 [Arabidopsis thalian 0.984 0.956 0.567 6.9e-86
TAIR|locus:2161283316 AT5G58390 [Arabidopsis thalian 0.968 0.968 0.556 3.8e-85
TAIR|locus:2012607321 AT1G14550 [Arabidopsis thalian 0.984 0.968 0.534 3.9e-83
TAIR|locus:2028280346 AT1G44970 [Arabidopsis thalian 0.933 0.852 0.542 6.6e-81
TAIR|locus:2012597315 PER4 "peroxidase 4" [Arabidops 0.977 0.980 0.509 8.7e-79
TAIR|locus:2115335331 AT4G36430 [Arabidopsis thalian 0.927 0.885 0.514 1.1e-76
TAIR|locus:2053129338 AT2G18150 [Arabidopsis thalian 0.927 0.866 0.504 2.7e-75
TAIR|locus:2154925336 AT5G66390 [Arabidopsis thalian 0.924 0.869 0.526 4.5e-75
TAIR|locus:2053139337 AT2G18140 [Arabidopsis thalian 0.924 0.866 0.509 1.7e-73
TAIR|locus:2153529 PRX52 "peroxidase 52" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 868 (310.6 bits), Expect = 7.7e-87, P = 7.7e-87
 Identities = 174/296 (58%), Positives = 214/296 (72%)

Query:    23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
             L+  +Y   CP  L T++  V++AV  E RMGAS+LRL FHDCFV GCD SILLDDTS+ 
Sbjct:    30 LTTNFYSTSCPNLLSTVQTAVKSAVNSEARMGASILRLFFHDCFVNGCDGSILLDDTSSF 89

Query:    83 DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
               E+NA PN NS RGF VID IK  ++K C   VVSCADILA+AARDSVVALGGP W V 
Sbjct:    90 TGEQNAAPNRNSARGFNVIDNIKSAVEKACPG-VVSCADILAIAARDSVVALGGPNWNVK 148

Query:   143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
             +GRRD+ TA++  AN++IP+P  +L+ LISSF   GL+  D+VALSG HTIG +RC+ FR
Sbjct:   149 VGRRDARTASQAAANSNIPAPTSSLSQLISSFSAVGLSTRDMVALSGAHTIGQSRCTNFR 208

Query:   203 NRIYNATNIDPDFAKERQRTCP--STGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLIS 259
              RIYN TNI+  FA  RQRTCP  S  GD NLAP D  T  +FD  YF +L+ +RGLL S
Sbjct:   209 ARIYNETNINAAFATTRQRTCPRASGSGDGNLAPLDVTTAASFDNNYFKNLMTQRGLLHS 268

Query:   260 DQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
             DQ LFNGGSTD +V+ YS N  +F++DF  +MIKMG+I+ LTG+ G+IR  C R N
Sbjct:   269 DQVLFNGGSTDSIVRGYSNNPSSFNSDFTAAMIKMGDISPLTGSSGEIRKVCGRTN 324
GO:0004601 "peroxidase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0006979 "response to oxidative stress" evidence=IEA
GO:0020037 "heme binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005618 "cell wall" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0005829 "cytosol" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2161193 AT5G58400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161283 AT5G58390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012607 AT1G14550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028280 AT1G44970 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2012597 PER4 "peroxidase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2115335 AT4G36430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053129 AT2G18150 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154925 AT5G66390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053139 AT2G18140 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P27337PER1_HORVU1, ., 1, 1, ., 1, ., 70.52950.98100.9841N/Ano
P22195PER1_ARAHY1, ., 1, 1, ., 1, ., 70.63600.92400.9240N/Ano
Q02200PERX_NICSY1, ., 1, 1, ., 1, ., 70.56960.98410.9658N/Ano
A2YPX3PER2_ORYSI1, ., 1, 1, ., 1, ., 70.59240.89550.9012N/Ano
P00434PERP7_BRARA1, ., 1, 1, ., 1, ., 70.56750.92400.9864N/Ano
Q9FLC0PER52_ARATH1, ., 1, 1, ., 1, ., 70.58780.92400.9012yesno
Q05855PER1_WHEAT1, ., 1, 1, ., 1, ., 70.54080.97460.9871N/Ano
A5H454PER66_MAIZE1, ., 1, 1, ., 1, ., 70.52730.89870.8875N/Ano
A5H453PER42_MAIZE1, ., 1, 1, ., 1, ., 70.51680.91130.8971N/Ano
A5H452PER70_MAIZE1, ., 1, 1, ., 1, ., 70.60540.91770.9034N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.11.1.70.946
3rd Layer1.11.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_VI000875
hypothetical protein (321 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
cd00693298 cd00693, secretory_peroxidase, Horseradish peroxid 1e-159
PLN03030324 PLN03030, PLN03030, cationic peroxidase; Provision 4e-75
pfam00141180 pfam00141, peroxidase, Peroxidase 2e-67
cd00314255 cd00314, plant_peroxidase_like, Heme-dependent per 2e-36
cd00691253 cd00691, ascorbate_peroxidase, Ascorbate peroxidas 2e-22
PLN02608289 PLN02608, PLN02608, L-ascorbate peroxidase 2e-14
PLN02364250 PLN02364, PLN02364, L-ascorbate peroxidase 1 1e-12
PLN02879251 PLN02879, PLN02879, L-ascorbate peroxidase 1e-11
cd08201264 cd08201, plant_peroxidase_like_1, Uncharacterized 2e-10
cd00692328 cd00692, ligninase, Ligninase and other manganese- 1e-09
pfam00141180 pfam00141, peroxidase, Peroxidase 0.004
>gnl|CDD|173827 cd00693, secretory_peroxidase, Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information 
 Score =  446 bits (1151), Expect = e-159
 Identities = 158/299 (52%), Positives = 205/299 (68%), Gaps = 11/299 (3%)

Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           LS  +Y K CP A   ++ +V AAV+ + R+ A+LLRLHFHDCFV+GCDAS+LLD T+  
Sbjct: 2   LSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANN 61

Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
            SEK+A P N S+RGF+VID IK  L+  C   VVSCADILA+AARD+VV  GGP+++VP
Sbjct: 62  TSEKDAPP-NLSLRGFDVIDDIKAALEAACPG-VVSCADILALAARDAVVLAGGPSYEVP 119

Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGRRD   ++     N +PSPF +++ LIS F  +GL  TDLVALSG HTIG A CS+F 
Sbjct: 120 LGRRDGRVSSANDVGN-LPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFS 178

Query: 203 NRIYNATN-------IDPDFAKERQRTCPSTGGDSNLAPFDP-TPLTFDGKYFSSLLQKR 254
           +R+YN +        +DP +A + ++ CP+ G D  L P DP TP TFD  Y+ +LL  R
Sbjct: 179 DRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238

Query: 255 GLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRR 313
           GLL SDQAL +   T  +V  Y+ N  AF  DFA +M+KMGNI VLTG++G+IR NCR 
Sbjct: 239 GLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRV 297

Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites. Length = 298
>gnl|CDD|215545 PLN03030, PLN03030, cationic peroxidase; Provisional Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information
>gnl|CDD|173823 cd00314, plant_peroxidase_like, Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>gnl|CDD|173825 cd00691, ascorbate_peroxidase, Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>gnl|CDD|178218 PLN02608, PLN02608, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|166005 PLN02364, PLN02364, L-ascorbate peroxidase 1 Back     alignment and domain information
>gnl|CDD|178467 PLN02879, PLN02879, L-ascorbate peroxidase Back     alignment and domain information
>gnl|CDD|173829 cd08201, plant_peroxidase_like_1, Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>gnl|CDD|173826 cd00692, ligninase, Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>gnl|CDD|215745 pfam00141, peroxidase, Peroxidase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 316
PLN03030324 cationic peroxidase; Provisional 100.0
cd00693298 secretory_peroxidase Horseradish peroxidase and re 100.0
PF00141230 peroxidase: Peroxidase; InterPro: IPR002016 Peroxi 100.0
PLN02608289 L-ascorbate peroxidase 100.0
cd00691253 ascorbate_peroxidase Ascorbate peroxidases and cyt 100.0
PLN02364250 L-ascorbate peroxidase 1 100.0
cd00692328 ligninase Ligninase and other manganese-dependent 100.0
PLN02879251 L-ascorbate peroxidase 100.0
cd00314255 plant_peroxidase_like Heme-dependent peroxidases s 100.0
cd00649409 catalase_peroxidase_1 N-terminal catalytic domain 100.0
TIGR00198 716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
cd08201264 plant_peroxidase_like_1 Uncharacterized family of 100.0
PRK15061 726 catalase/hydroperoxidase HPI(I); Provisional 100.0
cd08200297 catalase_peroxidase_2 C-terminal non-catalytic dom 100.0
TIGR00198716 cat_per_HPI catalase/peroxidase HPI. Note that the 100.0
PRK15061726 catalase/hydroperoxidase HPI(I); Provisional 100.0
COG0376 730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.97
COG0376730 KatG Catalase (peroxidase I) [Inorganic ion transp 99.53
PTZ00411333 transaldolase-like protein; Provisional 87.2
>PLN03030 cationic peroxidase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=5.3e-106  Score=762.51  Aligned_cols=306  Identities=42%  Similarity=0.706  Sum_probs=283.5

Q ss_pred             hHHHHHHHHHHHh---hhccCCCCcCccccCCCChHHHHHHHHHHHHHhccchhhhHHHHHhhccCCCCCCceEeccCCC
Q 021171            4 RGIFHVVLILAFA---ATAFSTLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTS   80 (316)
Q Consensus         4 ~~~~~~~~~~~~~---~~~~~~l~~~~Y~~sCP~~e~~V~~~v~~~~~~d~~~aa~llRl~FHDc~v~GcDgSill~~~~   80 (316)
                      |+++.++++++++   .++.++|+++||++|||++|+||++.|++++.+|++++|++|||+||||||+||||||||+++ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~-   81 (324)
T PLN03030          3 RFIVILFFLLAMMATTLVQGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS-   81 (324)
T ss_pred             eehhHHHHHHHHHhcccchhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC-
Confidence            4444444444433   223467999999999999999999999999999999999999999999999999999999964 


Q ss_pred             CCcccccCCCCCCCchhHHHHHHHHHHHhhhCCCCcccHhHHHHHhhhhHHhhcCCCCcccCCCCCCCCCcccccccCCC
Q 021171           81 TIDSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDI  160 (316)
Q Consensus        81 ~~~~E~~~~~N~~~l~g~~~i~~iK~~le~~cp~~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~l  160 (316)
                        .+||++++|. ++|||++|+.||+++|++||+ +|||||||+|||||||+++|||.|+|++||||+++|.+.++. +|
T Consensus        82 --~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg-~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~L  156 (324)
T PLN03030         82 --NTEKTALPNL-LLRGYDVIDDAKTQLEAACPG-VVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NL  156 (324)
T ss_pred             --cccccCCCCc-CcchHHHHHHHHHHHHhhCCC-cccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CC
Confidence              3699999998 999999999999999999999 999999999999999999999999999999999999887775 89


Q ss_pred             CCCCCCHHHHHHHHHHcCCCcccchhccCCccccccccccccccccC--------CCCCCHHHHHHHhhcCCCCCCCCCC
Q 021171          161 PSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFRNRIYN--------ATNIDPDFAKERQRTCPSTGGDSNL  232 (316)
Q Consensus       161 P~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHtiG~~hc~~f~~Rl~~--------dp~~d~~~~~~L~~~Cp~~~~~~~~  232 (316)
                      |.|+.++++|++.|+++|||.+|||+||||||||++||.+|.+||||        ||+|||.|+.+|++.||..+.....
T Consensus       157 P~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~  236 (324)
T PLN03030        157 PGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRR  236 (324)
T ss_pred             cCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999995        8999999999999999964333346


Q ss_pred             CCCC-CCCCccChHHHHHHhhcCCCcchhhhcccCcchHHHHHHhhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcc
Q 021171          233 APFD-PTPLTFDGKYFSSLLQKRGLLISDQALFNGGSTDGLVKTYSLNF----KAFSADFANSMIKMGNINVLTGNKGQI  307 (316)
Q Consensus       233 ~~~D-~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~~t~~~V~~~A~d~----~~F~~~Fa~Am~Km~~lgv~tg~~Gei  307 (316)
                      +++| .||.+|||+||+||++++|+|+|||+|+.|++|+++|++||.|+    +.|+++|++||+|||+|+|+||++|||
T Consensus       237 ~~lD~~Tp~~FDn~Yy~nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEI  316 (324)
T PLN03030        237 IALDTGSSNRFDASFFSNLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEI  316 (324)
T ss_pred             ccCCCCCCcccccHHHHHHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCce
Confidence            7899 99999999999999999999999999999999999999999875    599999999999999999999999999


Q ss_pred             ccccccCC
Q 021171          308 RSNCRRLN  315 (316)
Q Consensus       308 R~~C~~~n  315 (316)
                      ||+|+++|
T Consensus       317 Rk~C~~vN  324 (324)
T PLN03030        317 RKVCSAIN  324 (324)
T ss_pred             eccccccC
Confidence            99999998

>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases Back     alignment and domain information
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions Back     alignment and domain information
>PLN02608 L-ascorbate peroxidase Back     alignment and domain information
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases Back     alignment and domain information
>PLN02364 L-ascorbate peroxidase 1 Back     alignment and domain information
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases Back     alignment and domain information
>PLN02879 L-ascorbate peroxidase Back     alignment and domain information
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases Back     alignment and domain information
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases Back     alignment and domain information
>TIGR00198 cat_per_HPI catalase/peroxidase HPI Back     alignment and domain information
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PTZ00411 transaldolase-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1sch_A294 Peanut Peroxidase Length = 294 1e-105
1pa2_A306 Arabidopsis Thaliana Peroxidase A2 Length = 306 3e-75
1fhf_A304 The Structure Of Soybean Peroxidase Length = 304 5e-75
1qgj_A300 Arabidopsis Thaliana Peroxidase N Length = 300 4e-73
4a5g_A308 Raphanus Sativus Anionic Peroxidase. Length = 308 1e-72
1gx2_A309 Recombinant Horseradish Peroxidase Phe209ser Comple 1e-70
1w4w_A323 Ferric Horseradish Peroxidase C1a In Complex With F 3e-70
2atj_A308 Recombinant Horseradish Peroxidase Complex With Ben 3e-70
1atj_A306 Recombinant Horseradish Peroxidase C1a Length = 306 3e-70
6atj_A308 Recombinant Horseradish Peroxidase C Complex With F 3e-70
1gwo_A309 Recombinant Horseradish Peroxidase C1a Ala170gln Le 4e-70
1gwu_A309 Recombinant Horseradish Peroxidase C1a Ala140gly Le 5e-70
1gw2_A308 Recombinant Horseradish Peroxidase C1a Thr171ser In 9e-70
3atj_A309 Heme Ligand Mutant Of Recombinant Horseradish Perox 2e-69
2ylj_A306 Horse Radish Peroxidase, Mutant S167y Length = 306 2e-69
4atj_A309 Distal Heme Pocket Mutant (H42e) Of Recombinant Hor 3e-69
1kzm_A308 Distal Heme Pocket Mutant (r38s/h42e) Of Recombinan 2e-68
3hdl_A304 Crystal Structure Of Highly Glycosylated Peroxidase 1e-64
1bgp_A309 Crystal Structure Of Barley Grain Peroxidase 1 Leng 4e-61
1iyn_A295 Crystal Structure Of Chloroplastic Ascorbate Peroxi 6e-12
2vcf_X264 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 1e-10
2xif_A249 The Structure Of Ascorbate Peroxidase Compound Ii L 1e-10
1oaf_A261 Ascobate Peroxidase From Soybean Cytosol In Complex 1e-10
1apx_A249 Crystal Structure Of Recombinant Ascorbate Peroxida 2e-10
2cl4_X261 Ascorbate Peroxidase R172a Mutant Length = 261 2e-10
2y6b_A249 Ascorbate Peroxidase R38k Mutant Length = 249 3e-10
2ggn_X261 Conformational Mobility In The Active Site Of A Hem 5e-10
4ged_A268 Crystal Structure Of The Leishmania Major Peroxidas 5e-10
3riw_A271 The Crystal Structure Of Leishmania Major Peroxidas 5e-10
3riv_A271 The Crystal Structure Of Leishmania Major Peroxidas 5e-10
3zcg_A261 Ascorbate Peroxidase W41a-h42c Mutant Length = 261 6e-10
3zcy_A249 Ascorbate Peroxidase W41a-h42y Mutant Length = 249 7e-10
3zch_A261 Ascorbate Peroxidase W41a-h42m Mutant Length = 261 7e-10
2y6a_A249 Ascorbate Peroxidase R38a Mutant Length = 249 7e-10
2vcs_A261 Structure Of Isoniazid (Inh) Bound To Cytosolic Soy 7e-10
1stq_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 1e-05
1ccl_A291 Probing The Strength And Character Of An Asp-His-X 4e-05
1krj_A294 Engineering Calcium-Binding Site Into Cytochrome C 6e-05
1jdr_A294 Crystal Structure Of A Proximal Domain Potassium Bi 6e-05
1sog_A294 Cyrstal Structure Of Cytochrome C Peroxidase Mutant 7e-05
1jci_A294 Stabilization Of The Engineered Cation-Binding Loop 7e-05
3e2n_A287 Engineering Ascorbate Peroxidase Activity Into Cyto 7e-05
1kxn_A289 Crystal Structure Of Cytochrome C Peroxidase With A 9e-05
4ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 1e-04
1kxm_A290 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
3exb_A295 Crystal Structure Of Cytochrome C Peroxidase With A 1e-04
1cck_A291 Altering Substrate Specificity Of Cytochrome C Pero 1e-04
1a2f_A291 Probing The Strength And Character Of An Asp-His-X 1e-04
2ia8_A291 Kinetic And Crystallographic Studies Of A Redesigne 1e-04
1ccb_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 1e-04
1cci_A294 How Flexible Are Proteins? Trapping Of A Flexible L 2e-04
1bva_A294 Manganese Binding Mutant In Cytochrome C Peroxidase 2e-04
1kok_A294 Crystal Structure Of Mesopone Cytochrome C Peroxida 2e-04
1bep_A291 Effect Of Unnatural Heme Substitution On Kinetics O 2e-04
1bek_A291 Effect Of Unnatural Heme Substitution On Kinetics O 2e-04
1ebe_A294 Laue Diffraction Study On The Structure Of Cytochro 2e-04
2xj5_A294 The Structure Of Cytochrome C Peroxidase Compound I 2e-04
2ccp_A296 X-Ray Structures Of Recombinant Yeast Cytochrome C 2e-04
1dj1_A291 Crystal Structure Of R48a Mutant Of Cytochrome C Pe 2e-04
1beq_A291 Interaction Between Proximal And Distals Regions Of 2e-04
1mk8_A294 Crystal Structure Of A Mutant Cytochrome C Peroxida 2e-04
3r98_A293 Joint Neutron And X-Ray Structure Of Cytochrome C P 2e-04
2v23_A296 Structure Of Cytochrome C Peroxidase Mutant N184r Y 2e-04
2gb8_A294 Solution Structure Of The Complex Between Yeast Iso 2e-04
3m23_A291 Crystallographic And Single Crystal Spectral Analys 2e-04
3e2o_A294 Crystal Structure Of Cytochrome C Peroxidase, N184r 2e-04
1dcc_A296 2.2 Angstrom Structure Of Oxyperoxidase: A Model Fo 2e-04
1s6v_A294 Structure Of A Cytochrome C Peroxidase-Cytochrome C 2e-04
4a71_A296 Cytochrome C Peroxidase In Complex With Phenol Leng 2e-04
2v2e_A294 Structure Of Isoniazid (Inh) Bound To Cytochrome C 2e-04
2xil_A294 The Structure Of Cytochrome C Peroxidase Compound I 2e-04
1cca_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 2e-04
6ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 2e-04
1ccc_A297 The Asp-His-Fe Triad Of Cytochrome C Peroxidase Con 2e-04
7ccp_A296 Effect Of Arginine-48 Replacement On The Reaction B 2e-04
2x07_A293 Cytochrome C Peroxidase: Engineered Ascorbate Bindi 2e-04
2pcb_A296 Crystal Structure Of A Complex Between Electron Tra 2e-04
1a2g_A291 Probing The Strength And Character Of An Asp-His-X 3e-04
4a7m_A296 Cytochrome C Peroxidase S81w Mutant Length = 296 3e-04
1bem_A291 Interaction Between Proximal And Distals Regions Of 3e-04
5ccp_A296 Histidine 52 Is A Critical Residue For Rapid Format 3e-04
1cmu_A294 The Role Of Aspartate-235 In The Binding Of Cations 3e-04
2aqd_A294 Cytochrome C Peroxidase (Ccp) In Complex With 2,5- 3e-04
2anz_A294 Cytochrome C Peroxidase In Complex With 2,6-Diamino 3e-04
2rbu_X292 Cytochrome C Peroxidase In Complex With Cyclopentan 3e-04
1bej_A291 Interaction Between Proximal And Distals Regions Of 3e-04
1cpd_A296 A Cation Binding Motif Stabilizes The Compound I Ra 3e-04
3ccx_A294 Altering Substrate Specificity At The Heme Edge Of 3e-04
1cyf_A296 Identifying The Physiological Electron Transfer Sit 3e-04
2cep_A296 Role Of Met-230 In Intramolecular Electron Transfer 3e-04
1cpg_A296 A Cation Binding Motif Stabilizes The Compound I Ra 3e-04
4ccx_A294 Altering Substrate Specificity At The Heme Edge Of 3e-04
4a78_A296 Cytochrome C Peroxidase M119w In Complex With Guiac 3e-04
>pdb|1SCH|A Chain A, Peanut Peroxidase Length = 294 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (972), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 187/294 (63%), Positives = 220/294 (74%), Gaps = 2/294 (0%)
Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           LS  +Y   CP AL TIK  V +AV KE RMGASLLRLHFHDCFVQGCDAS+LLDDTS  
Sbjct: 2   LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
             EK A PN NS+RGFEVID IK +++ +C   VVSCADILAVAARDSVVALGG +W V 
Sbjct: 62  TGEKTAGPNANSIRGFEVIDTIKSQVESLCP-GVVSCADILAVAARDSVVALGGASWNVL 120
Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGRRDSTTA+ + AN+D+P+PF NL+GLIS+F  +G    +LV LSG HTIG A+C+AFR
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 203 NRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQKRGLLISDQ 261
            RIYN +NIDP +AK  Q  CPS GGD+NL+PFD  TP  FD  Y+ +L  K+GLL SDQ
Sbjct: 181 TRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQ 240
Query: 262 ALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
            LFNG STD  V  YS N   F+ DF N+MIKMGN++ LTG  GQIR+NCR+ N
Sbjct: 241 QLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2 Length = 306 Back     alignment and structure
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase Length = 304 Back     alignment and structure
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N Length = 300 Back     alignment and structure
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase. Length = 308 Back     alignment and structure
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate Length = 323 Back     alignment and structure
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With Benzhydroxamic Acid Length = 308 Back     alignment and structure
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Length = 306 Back     alignment and structure
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln Length = 309 Back     alignment and structure
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly Length = 309 Back     alignment and structure
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In Complex With Ferulic Acid Length = 308 Back     alignment and structure
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y Length = 306 Back     alignment and structure
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant Horseradish Peroxidase In Complex With Benzhydroxamic Acid Length = 309 Back     alignment and structure
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant Horseradish Peroxidase C (hrp C) Length = 308 Back     alignment and structure
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From Royal Palm Tree Length = 304 Back     alignment and structure
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1 Length = 309 Back     alignment and structure
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase From Tobacco Plants And Structural Insights For Its Instability Length = 295 Back     alignment and structure
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Length = 264 Back     alignment and structure
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii Length = 249 Back     alignment and structure
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With Ascorbate Length = 261 Back     alignment and structure
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase Length = 249 Back     alignment and structure
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant Length = 261 Back     alignment and structure
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant Length = 249 Back     alignment and structure
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme Peroxidase Length = 261 Back     alignment and structure
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major Peroxidase-Cytochrome C Complex Length = 268 Back     alignment and structure
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Mutant C197t Length = 271 Back     alignment and structure
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase Length = 271 Back     alignment and structure
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant Length = 261 Back     alignment and structure
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant Length = 249 Back     alignment and structure
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant Length = 261 Back     alignment and structure
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant Length = 249 Back     alignment and structure
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean Ascorbate Peroxidase Mutant H42a Length = 261 Back     alignment and structure
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m3 Length = 294 Back     alignment and structure
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding Variant Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant: Ccpk2m2 Length = 294 Back     alignment and structure
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In Cytochrome C Peroxidase (Ccp) Length = 294 Back     alignment and structure
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome C Peroxidase Length = 287 Back     alignment and structure
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 289 Back     alignment and structure
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Transfer Pathway Excised To Form A Ligand Binding Channel Length = 290 Back     alignment and structure
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A Proposed Electron Pathway Excised In A Complex With A Peptide Wire Length = 295 Back     alignment and structure
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase Towards A Small Molecular Substrate Peroxidase By Substituting Tyrosine For Phe 202 Length = 291 Back     alignment and structure
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned Manganese-Binding Site In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop Length = 294 Back     alignment and structure
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (Mpccp) Length = 294 Back     alignment and structure
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of Electron Transfer In Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii Length = 294 Back     alignment and structure
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C Peroxidase And Three Heme-Cleft Mutants Prepared By Site-Directed Mutagenesis Length = 296 Back     alignment and structure
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase Showing A Novel Trp-Tyr Covalent Cross-Link Length = 294 Back     alignment and structure
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C Peroxidase Length = 293 Back     alignment and structure
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a Length = 296 Back     alignment and structure
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1- Cytochrome C And Yeast Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of The Peroxidase Ferryl Intermediate Length = 291 Back     alignment and structure
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant Length = 294 Back     alignment and structure
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The Enzyme:peroxide Complex Length = 296 Back     alignment and structure
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site Specific Cross-Link Length = 294 Back     alignment and structure
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol Length = 296 Back     alignment and structure
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C Peroxidase Mutant N184r Y36a Length = 294 Back     alignment and structure
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I Length = 294 Back     alignment and structure
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls The Reduction Potential, Electronic Structure, And Coupling Of The Tryptophan Free-Radical To The Heme Length = 297 Back     alignment and structure
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between Cytochrome C Peroxidase And Hydrogen Peroxide Length = 296 Back     alignment and structure
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site Length = 293 Back     alignment and structure
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer Partners, Cytochrome C Peroxidase And Cytochrome C Length = 296 Back     alignment and structure
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X Hydrogen Bond By Introducing Buried Charges Length = 291 Back     alignment and structure
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant Length = 296 Back     alignment and structure
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of Cytochrome C Peroxidase Compound I Length = 296 Back     alignment and structure
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An Artificial Cavity At The Radical Site Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5- Diaminopyridine Length = 294 Back     alignment and structure
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With 2,6-Diaminopyridine Length = 294 Back     alignment and structure
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With Cyclopentane-Carboximidamide Length = 292 Back     alignment and structure
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of Cytochrome C Peroxidase Length = 291 Back     alignment and structure
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of Cytochrome C Peroxidase By Structure-Based Engineering Length = 296 Back     alignment and structure
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer Between The Oxyferryl Heme And Trp 191 In Cytochrome C Peroxidase Compound Ii Length = 296 Back     alignment and structure
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical Of Cytochrome C Peroxidase Length = 296 Back     alignment and structure
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of Cytochrome C Peroxidase Length = 294 Back     alignment and structure
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol Length = 296 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query316
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 0.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 0.0
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 0.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 0.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 1e-180
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 1e-179
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 1e-174
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 1e-108
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 2e-79
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 5e-74
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 1e-70
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 1e-68
2e39_A344 Peroxidase; heme protein, coordination geometry of 8e-68
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 2e-66
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 1e-18
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 2e-15
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Length = 294 Back     alignment and structure
 Score =  515 bits (1328), Expect = 0.0
 Identities = 187/294 (63%), Positives = 220/294 (74%), Gaps = 2/294 (0%)

Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           LS  +Y   CP AL TIK  V +AV KE RMGASLLRLHFHDCFVQGCDAS+LLDDTS  
Sbjct: 2   LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61

Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
             EK A PN NS+RGFEVID IK +++ +C   VVSCADILAVAARDSVVALGG +W V 
Sbjct: 62  TGEKTAGPNANSIRGFEVIDTIKSQVESLCPG-VVSCADILAVAARDSVVALGGASWNVL 120

Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGRRDSTTA+ + AN+D+P+PF NL+GLIS+F  +G    +LV LSG HTIG A+C+AFR
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180

Query: 203 NRIYNATNIDPDFAKERQRTCPSTGGDSNLAPFDP-TPLTFDGKYFSSLLQKRGLLISDQ 261
            RIYN +NIDP +AK  Q  CPS GGD+NL+PFD  TP  FD  Y+ +L  K+GLL SDQ
Sbjct: 181 TRIYNESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKKGLLHSDQ 240

Query: 262 ALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLN 315
            LFNG STD  V  YS N   F+ DF N+MIKMGN++ LTG  GQIR+NCR+ N
Sbjct: 241 QLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRKTN 294
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Length = 306 Back     alignment and structure
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} Length = 304 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Length = 304 Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Length = 309 Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Length = 309 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Length = 300 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Length = 295 Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Length = 261 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* Length = 331 Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Length = 357 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Length = 343 Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Length = 344 Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} Length = 338 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* Length = 271 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ... Length = 294 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Length = 268 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
3hdl_A304 Royal PALM TREE peroxidase; glycosylated, oxidored 100.0
1sch_A294 PNP, peanut peroxidase, major cationic isozyme; ca 100.0
1fhf_A304 SEED coat peroxidase; oxidoreductase; HET: HEM; 2. 100.0
1pa2_A306 Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45 100.0
1gwu_A309 Peroxidase C1A; oxidoreductase, glycoprotein, heme 100.0
1bgp_A309 Barley grain peroxidase; chromoprotein, oxidoreduc 100.0
1qgj_A300 Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A 100.0
1iyn_A295 Chloroplastic ascorbate peroxidase; hydrogen perox 100.0
1llp_A343 LIP4.15, lignin peroxidase; heme protein, glyco pr 100.0
2e39_A344 Peroxidase; heme protein, coordination geometry of 100.0
2cca_A 740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
2vcn_A261 Ascorbate peroxidase; INH, APX, isoniazid, oxidore 100.0
3m5q_A357 Manganese peroxidase 1; heme, Mn(II)-binding site, 100.0
1ub2_A 720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3fmu_A331 VersatIle peroxidase VPL2; class II (fungal) perox 100.0
1itk_A 731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3riv_A271 Ascorbate peroxidase; alpha helical bundle, heme p 100.0
3q3u_A338 Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A 100.0
3e2o_A294 CCP, cytochrome C peroxidase; cytochrome C peroxid 100.0
3ut2_A 764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
3n3r_A 748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3vli_A 737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
1u2k_A309 Peroxidase/catalase HPI; KATG, catalase-peroxidase 100.0
2cca_A740 Peroxidase/catalase T; oxidoreductase, catalase-pe 100.0
1itk_A731 Catalase-peroxidase; heme protein, oxidoreductase; 100.0
3rrw_A268 Thylakoid lumenal 29 kDa protein, chloroplastic; c 100.0
1ub2_A720 Catalase-peroxidase; KATG, cyanobacteria, oxidored 100.0
3vli_A737 Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1 100.0
3n3r_A748 Catalase-peroxidase; E198A variant, tuberclosis, i 100.0
3ut2_A764 Catalase-peroxidase 2; KATG, fungal, heme enzyme, 100.0
>3hdl_A Royal PALM TREE peroxidase; glycosylated, oxidoreductase; HET: HEM MES NAG FUC MAN; 1.85A {Roystonea regia} SCOP: a.93.1.0 Back     alignment and structure
Probab=100.00  E-value=2.3e-108  Score=775.82  Aligned_cols=293  Identities=45%  Similarity=0.781  Sum_probs=283.6

Q ss_pred             CCcCccccCCCChHHHHHHHHHHHHHhccchhhhHHHHHhhccCCCCCCceEeccCCCCCcccccCCCCCCCchhHHHHH
Q 021171           23 LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVID  102 (316)
Q Consensus        23 l~~~~Y~~sCP~~e~~V~~~v~~~~~~d~~~aa~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~~i~  102 (316)
                      |+++||++|||++|+|||+.|++++.+|++++|++|||+||||||+||||||||++++++.+||++++|.++||||++|+
T Consensus         2 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSiLld~t~~~~~Ek~~~~N~~~lrgf~vid   81 (304)
T 3hdl_A            2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVIT   81 (304)
T ss_dssp             CEETTTTTTCTTHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHTTTSSSSGGGCCCBTTBCCGGGSTTTTTTCCCHHHHH
T ss_pred             CccChhhCcCcCHHHHHHHHHHHHHHhCCcchHHHHHHheecccCCCCCeeeeecCCCCCcccccCCCcccchHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999888889999999987899999999


Q ss_pred             HHHHHHhhhCCCCcccHhHHHHHhhhhHHhhcCCCCcccCCCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCcc
Q 021171          103 LIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNET  182 (316)
Q Consensus       103 ~iK~~le~~cp~~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~  182 (316)
                      .||++||++||+ +||||||||||||+||+++|||.|+|++||+|+.++...+++++||+|+.++++|++.|++||||++
T Consensus        82 ~iK~~le~~Cp~-~VScADilalAardav~~~GGP~~~v~~GRrD~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~  160 (304)
T 3hdl_A           82 AAKSAVEAACPQ-TVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTAD  160 (304)
T ss_dssp             HHHHHHHHHSTT-TSCHHHHHHHHHHHHHHHHHCCCCCCEECCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHTTTCCHH
T ss_pred             HHHHHHHhhCCC-CccHHHHHHHHHhhhhhccCCCccccccCccCCCCCCccccccCCCCCCCCHHHHHHHHHHcCCCHH
Confidence            999999999999 9999999999999999999999999999999999999888778899999999999999999999999


Q ss_pred             cchhccCCccccccccccccccccC-------CCCCCHHHHHHHhhcCCCCCC--CCCCCCCC-CCCCccChHHHHHHhh
Q 021171          183 DLVALSGGHTIGFARCSAFRNRIYN-------ATNIDPDFAKERQRTCPSTGG--DSNLAPFD-PTPLTFDGKYFSSLLQ  252 (316)
Q Consensus       183 e~VaLsGaHtiG~~hc~~f~~Rl~~-------dp~~d~~~~~~L~~~Cp~~~~--~~~~~~~D-~Tp~~FDN~Yy~~l~~  252 (316)
                      ||||||||||||++||.+|.+|+||       ||+|||.|++.|++.||.+++  +.+.++|| .||.+|||+||+||+.
T Consensus       161 d~VaLsGaHTiG~ahC~~f~~Rly~f~~~~~~DP~ld~~~a~~L~~~Cp~~~~~~~~~~~~lD~~TP~~FDN~Yy~nL~~  240 (304)
T 3hdl_A          161 EMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQL  240 (304)
T ss_dssp             HHHHHGGGGGSSEEEGGGTGGGTSSCSSSSSSCTTSCHHHHHHHHHHSCTTCCTTSCCEEESCSSSTTSCSTHHHHHHHT
T ss_pred             HhhhhhccccccccccchhhhhhcccCCCCCCCCcccHHHHHHHhccCCCCCCCCCccccCCCCCCcccccHHHHHHHHh
Confidence            9999999999999999999999986       899999999999999997655  55678899 9999999999999999


Q ss_pred             cCCCcchhhhcccCcchHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccCCC
Q 021171          253 KRGLLISDQALFNGGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN  316 (316)
Q Consensus       253 ~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n~  316 (316)
                      ++|||+|||+|+.|++|+++|++||.|++.|+++|++||+||++|+|+||.+||||++|++||+
T Consensus       241 ~~glL~SDq~L~~d~~t~~~V~~yA~~~~~F~~~Fa~AmvKmg~igv~tg~~GeIR~~C~~~N~  304 (304)
T 3hdl_A          241 TLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS  304 (304)
T ss_dssp             TCCCSHHHHGGGSSHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCC-
T ss_pred             CcCCCCCCHHHhcCccHHHHHHHhccCHHHHHHHHHHHHHHHHhcCCCCCCCCeeeCCccccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999995
>1sch_A PNP, peanut peroxidase, major cationic isozyme; calcium binding, glycosylation, oxidoreductase; HET: NAG HEM; 2.56A {Arachis hypogaea} SCOP: a.93.1.1 Back     alignment and structure
>1fhf_A SEED coat peroxidase; oxidoreductase; HET: HEM; 2.80A {Glycine max} SCOP: a.93.1.1 Back     alignment and structure
>1pa2_A Peroxidase, ATP A2; oxidoreductase; HET: HEM; 1.45A {Arabidopsis thaliana} SCOP: a.93.1.1 PDB: 1qo4_A* Back     alignment and structure
>1gwu_A Peroxidase C1A; oxidoreductase, glycoprotein, heme, multigene family, signal,; HET: HEM; 1.31A {Armoracia rusticana} SCOP: a.93.1.1 PDB: 1w4w_A* 1w4y_A* 1gwo_A* 2atj_A* 1gwt_A* 3atj_A* 1gx2_A* 7atj_A* 1h55_A* 1h58_A* 1h5a_A* 1h5c_A* 1h5d_A* 1h5e_A* 1h5f_A* 1h57_A* 1h5h_A* 1h5i_A* 1h5j_A* 1h5k_A* ... Back     alignment and structure
>1bgp_A Barley grain peroxidase; chromoprotein, oxidoreductase; HET: HEM; 1.90A {Hordeum vulgare} SCOP: a.93.1.1 Back     alignment and structure
>1qgj_A Peroxidase N; oxidoreductase; HET: HEM GSH; 1.90A {Arabidopsis thaliana} SCOP: a.93.1.1 Back     alignment and structure
>1iyn_A Chloroplastic ascorbate peroxidase; hydrogen peroxide, tobacco plant, stromal ascorbate peroxidase, oxidoreductase; HET: HEM; 1.60A {Nicotiana tabacum} SCOP: a.93.1.1 Back     alignment and structure
>1llp_A LIP4.15, lignin peroxidase; heme protein, glyco protein,, oxidoreductase; HET: NAG MAN A2G HEM; 1.70A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1lga_A* 1b80_A* 1b82_A* 1b85_A* 1qpa_A* Back     alignment and structure
>2e39_A Peroxidase; heme protein, coordination geometry of heme iron, ARP, perox oxidoreductase; HET: NAG MAN HEM; 1.30A {'arthromyces ramosus'} SCOP: a.93.1.1 PDB: 1arp_A* 1arv_A* 1arw_A* 1arx_A* 1ary_A* 1c8i_A* 1ck6_A* 1gza_A* 1gzb_A* 1hsr_A* 1aru_A* 2e3a_A* 2e3b_A* 1lyk_A* 1lyc_A* 1ly9_A* 1h3j_A* 1ly8_A* Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>2vcn_A Ascorbate peroxidase; INH, APX, isoniazid, oxidoreductase; HET: HEM ISZ; 1.20A {Glycine max} PDB: 2ggn_X* 2ghd_X* 2ghe_X* 2ghc_X* 2vnx_X* 2vnz_X* 2vo2_X* 2wd4_A* 1oaf_A* 1oag_A* 1v0h_X* 2ghh_X* 2ghk_X* 2vcf_X* 2cl4_X* 2vcs_A* 2xi6_A* 2xif_A* 2xih_A* 2xj6_A* ... Back     alignment and structure
>3m5q_A Manganese peroxidase 1; heme, Mn(II)-binding site, Ca(II)-binding site, glycosylation, ultrahigh resolution, calcium; HET: NAG MAN HEM; 0.93A {Phanerochaete chrysosporium} SCOP: a.93.1.1 PDB: 1mnp_A* 1yyg_A* 1yzp_A* 1yzr_A* 1yyd_A* 3m8m_A* 1mn1_A* 1mn2_A* Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3fmu_A VersatIle peroxidase VPL2; class II (fungal) peroxidases, protoporphyrin IX, electron T lignin peroxidase, lignin degradation; HET: HEM; 1.04A {Pleurotus eryngii} PDB: 3fjw_A* 2boq_A* 3fm1_A* 3fm4_A* 3fm6_A* 3fkg_A* 2w23_A* 2vka_A* 4fcn_A* 4g05_A* 4fcs_A* 4fef_A* 4fdq_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase, oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB: 3riw_A* 4ged_A* Back     alignment and structure
>3q3u_A Lignin peroxidase; oxidoreductase; HET: HEM; 1.85A {Trametes cervina} SCOP: a.93.1.0 Back     alignment and structure
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme, hydrogen peroxide, iron, metal-binding, mitochondrion; HET: HEM; 1.06A {Saccharomyces cerevisiae} SCOP: a.93.1.1 PDB: 4a71_A* 1z53_A* 1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A* 2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 4a6z_A* 2v23_A* 1ebe_A* 3r98_A* 3r99_A* 1mkr_A* ... Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>1u2k_A Peroxidase/catalase HPI; KATG, catalase-peroxidase, C-terminal domain, oxidoreductase; 2.00A {Escherichia coli} SCOP: a.93.1.3 PDB: 1u2l_A 1u2j_A Back     alignment and structure
>2cca_A Peroxidase/catalase T; oxidoreductase, catalase-peroxidase, KATG, heme, hydrogen peroxide, iron, metal-binding, organic radical; HET: HEM; 2.0A {Mycobacterium tuberculosis} SCOP: a.93.1.3 a.93.1.3 PDB: 1sj2_A* 2ccd_A* Back     alignment and structure
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A {Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3rrw_A Thylakoid lumenal 29 kDa protein, chloroplastic; chloroplast thylakoid lumen, plant protein; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>1ub2_A Catalase-peroxidase; KATG, cyanobacteria, oxidoreductase; HET: HEM; 2.40A {Synechococcus elongatus} SCOP: a.93.1.3 a.93.1.3 Back     alignment and structure
>3vli_A Catalase-peroxidase 2; oxidoreductase; HET: HEM; 1.70A {Haloarcula marismortui} PDB: 3vlh_A* 3vlj_A* 3vlk_A* 3vll_A* 3uw8_A* 3vlm_A* 1itk_A* Back     alignment and structure
>3n3r_A Catalase-peroxidase; E198A variant, tuberclosis, isonicotini hydrazide binding, oxidoreductase; HET: TOX HEM; 1.60A {Burkholderia pseudomallei} PDB: 3n3s_A* 3n3o_A* 2fxj_A* 3n3p_A* 2fxg_A* 3n3n_A* 2fxh_A* 2dv2_A* 3n3q_A* 2dv1_A* 1x7u_A* 1mwv_A* 2b2o_A* 2b2q_A* 2b2r_A* 2b2s_A* Back     alignment and structure
>3ut2_A Catalase-peroxidase 2; KATG, fungal, heme enzyme, oxidoreducta; HET: TOX HEM; 1.55A {Magnaporthe oryzae 70-15} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 316
d1fhfa_304 a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine m 1e-122
d1pa2a_306 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-122
d1scha_294 a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hy 1e-120
d1bgpa_309 a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vu 1e-118
d1qgja_300 a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (A 1e-115
d1gwua_307 a.93.1.1 (A:) Plant peroxidase {Horseradish (Armor 1e-114
d1yyda1357 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) { 2e-68
d1llpa_343 a.93.1.1 (A:) Fungal peroxidase (ligninase) {White 1e-63
d2e39a1336 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) { 2e-61
d1iyna_275 a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco 5e-52
d1oafa_250 a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glyci 5e-46
d2euta1291 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {B 4e-45
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 304 Back     information, alignment and structure

class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

 Score =  350 bits (899), Expect = e-122
 Identities = 154/303 (50%), Positives = 202/303 (66%), Gaps = 11/303 (3%)

Query: 23  LSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTI 82
           L+P +Y + CP   P +  ++  A   + R+GASL+RLHFHDCFVQGCD S+LL++T TI
Sbjct: 2   LTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTI 61

Query: 83  DSEKNAIPNNNSVRGFEVIDLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVP 142
           +SE++A+PN NS+RG +V++ IK  ++  C    VSCADILA+AA  + V  GGP W VP
Sbjct: 62  ESEQDALPNINSIRGLDVVNDIKTAVENSCP-DTVSCADILAIAAEIASVLGGGPGWPVP 120

Query: 143 LGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNETDLVALSGGHTIGFARCSAFR 202
           LGRRDS TANRTLAN ++P+PF NLT L +SF  QGLN  DLV LSGGHT G ARCS F 
Sbjct: 121 LGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTFI 180

Query: 203 NRIYNATN-------IDPDFAKERQRTCPSTGGDSNLAPFDP-TPLTFDGKYFSSLLQKR 254
           NR+YN +N       ++  + +  +  CP      NL   D  TP  FD +Y+S+LLQ  
Sbjct: 181 NRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQLN 240

Query: 255 GLLISDQALFN--GGSTDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCR 312
           GLL SDQ LF+  G  T  +V ++S N   F ++F  SMIKMGNI VLTG++G+IR  C 
Sbjct: 241 GLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCN 300

Query: 313 RLN 315
            +N
Sbjct: 301 FVN 303
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Length = 306 Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Length = 294 Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Length = 309 Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Length = 300 Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Length = 307 Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 357 Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 343 Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Length = 336 Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 275 Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Length = 250 Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 291 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query316
d1fhfa_304 Plant peroxidase {Soybean (Glycine max) [TaxId: 38 100.0
d1pa2a_306 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1bgpa_309 Plant peroxidase {Barley (Hordeum vulgare), peroxi 100.0
d1qgja_300 Plant peroxidase {Mouse-ear cress (Arabidopsis tha 100.0
d1gwua_307 Plant peroxidase {Horseradish (Armoracia rusticana 100.0
d1scha_294 Plant peroxidase {Peanut (Arachis hypogaea) [TaxId 100.0
d1iyna_275 Ascorbate peroxidase {Common tobacco (Nicotiana ta 100.0
d1oafa_250 Ascorbate peroxidase {Soybean (Glycine max) [TaxId 100.0
d1yyda1357 Fungal peroxidase (ligninase) {Basidomycetos fungu 100.0
d1llpa_343 Fungal peroxidase (ligninase) {White rot basidiomy 100.0
d2e39a1336 Fungal peroxidase (ligninase) {Arthromyces ramosus 100.0
d2euta1291 Cytochrome c peroxidase, CCP {Baker's yeast (Sacch 100.0
d1mwva2308 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka2308 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1ub2a2294 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d1u2ka_292 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d1itka1406 Catalase-peroxidase KatG {Archaeon Haloarcula mari 100.0
d1mwva1406 Catalase-peroxidase KatG {Burkholderia pseudomalle 100.0
d2ccaa1410 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
d1ub2a1406 Catalase-peroxidase KatG {Synechococcus sp. pcc 79 100.0
d2ccaa2285 Catalase-peroxidase KatG {Mycobacterium tuberculos 100.0
>d1fhfa_ a.93.1.1 (A:) Plant peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Heme-dependent peroxidases
superfamily: Heme-dependent peroxidases
family: CCP-like
domain: Plant peroxidase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=4.4e-103  Score=740.05  Aligned_cols=294  Identities=52%  Similarity=0.889  Sum_probs=284.4

Q ss_pred             CCCcCccccCCCChHHHHHHHHHHHHHhccchhhhHHHHHhhccCCCCCCceEeccCCCCCcccccCCCCCCCchhHHHH
Q 021171           22 TLSPCYYDKVCPEALPTIKRIVEAAVEKEGRMGASLLRLHFHDCFVQGCDASILLDDTSTIDSEKNAIPNNNSVRGFEVI  101 (316)
Q Consensus        22 ~l~~~~Y~~sCP~~e~~V~~~v~~~~~~d~~~aa~llRl~FHDc~v~GcDgSill~~~~~~~~E~~~~~N~~~l~g~~~i  101 (316)
                      ||+.+||++|||++|+||+++|++++..|++++|+||||+||||||+||||||||++++++.+|+++++|.++++||++|
T Consensus         1 qL~~~~Y~~sCp~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDgSill~~~~~~~~E~~~~~N~~~~~g~~~i   80 (304)
T d1fhfa_           1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVV   80 (304)
T ss_dssp             CCBTTTTTTTSTTHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTTCSSSGGGCCCCSSCCCGGGSTTTTTTCCCHHHH
T ss_pred             CCCCccccccCcCHHHHHHHHHHHHHHhCCchhHHHHHHHHHhhccCCCCeeEeecCCCCccccccCCcccccchhHHHH
Confidence            79999999999999999999999999999999999999999999999999999999988888999999998778999999


Q ss_pred             HHHHHHHhhhCCCCcccHhHHHHHhhhhHHhhcCCCCcccCCCCCCCCCcccccccCCCCCCCCCHHHHHHHHHHcCCCc
Q 021171          102 DLIKKELDKVCKRPVVSCADILAVAARDSVVALGGPTWKVPLGRRDSTTANRTLANNDIPSPFLNLTGLISSFRRQGLNE  181 (316)
Q Consensus       102 ~~iK~~le~~cp~~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~  181 (316)
                      +.||++||+.||+ +|||||||+||||+||+++|||.|+|++||+|+.+|+..++..+||.|+.++++|++.|++||||.
T Consensus        81 d~iK~~le~~cp~-~VScADIlalAardAv~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~  159 (304)
T d1fhfa_          81 NDIKTAVENSCPD-TVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNT  159 (304)
T ss_dssp             HHHHHHHHTTSTT-TSCHHHHHHHHHHHHHHTTTCCCCCCCBCCCBCSCCCHHHHHHHSCCTTCCHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHhhCCC-ccCHHHHHHHHHhhhhhhcCCCcccccCCCcCcCccccccccccCCCCCCCHHHHHHHHHHcCCCH
Confidence            9999999999999 999999999999999999999999999999999999888777889999999999999999999999


Q ss_pred             ccchhccCCccccccccccccccccC-------CCCCCHHHHHHHhhcCCCCCCCCCCCCCC-CCCCccChHHHHHHhhc
Q 021171          182 TDLVALSGGHTIGFARCSAFRNRIYN-------ATNIDPDFAKERQRTCPSTGGDSNLAPFD-PTPLTFDGKYFSSLLQK  253 (316)
Q Consensus       182 ~e~VaLsGaHtiG~~hc~~f~~Rl~~-------dp~~d~~~~~~L~~~Cp~~~~~~~~~~~D-~Tp~~FDN~Yy~~l~~~  253 (316)
                      +||||||||||||++||.+|..|+|+       ||++++.|+..|+..||.++.+.+++.+| .||.+|||+||++++.+
T Consensus       160 ~d~VaLsGaHTiG~ahc~~~~~rl~~~~~~~~~d~~~~~~~~~~L~~~c~~~~~~~~~~~~d~~tp~~fDn~Yy~~l~~~  239 (304)
T d1fhfa_         160 LDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL  239 (304)
T ss_dssp             HHHHHHGGGGGSCEEEGGGTGGGTSCGGGSSSCCTTSCHHHHHHHHHHSCSSCSSCCEEESCSSSTTSCSTHHHHHHHTT
T ss_pred             HHHHHHhhhhhhcccccccccccccCCCCCCCCCcccCHHHHHHHHHhcCCCCCCCcccccCCCCCCccccHHHHHHhhc
Confidence            99999999999999999999999995       88999999999999999876666778889 99999999999999999


Q ss_pred             CCCcchhhhcccCc--chHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccCCC
Q 021171          254 RGLLISDQALFNGG--STDGLVKTYSLNFKAFSADFANSMIKMGNINVLTGNKGQIRSNCRRLNN  316 (316)
Q Consensus       254 ~glL~SD~~L~~d~--~t~~~V~~~A~d~~~F~~~Fa~Am~Km~~lgv~tg~~GeiR~~C~~~n~  316 (316)
                      +|+|+||++|+.||  +|+++|++||.|+++|+++|++||+||++||||||.+||||++|+++|.
T Consensus       240 ~glL~SD~~L~~dp~~~t~~~V~~yA~d~~~F~~~F~~Am~Km~~lgv~tg~~GeiR~~C~~~N~  304 (304)
T d1fhfa_         240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG  304 (304)
T ss_dssp             CCSSHHHHTTTSSTTCSSHHHHHHHHHCHHHHHHHHHHHHHHHTTTTCCCTTSSBCCSBTTBCCC
T ss_pred             CcccHhhHHHHhCCCchHHHHHHHHhhCHHHHHHHHHHHHHHHhcCCCCCCCCCcccCcccCcCC
Confidence            99999999999996  7999999999999999999999999999999999999999999999995
>d1pa2a_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase A2 [TaxId: 3702]} Back     information, alignment and structure
>d1bgpa_ a.93.1.1 (A:) Plant peroxidase {Barley (Hordeum vulgare), peroxidase 1 [TaxId: 4513]} Back     information, alignment and structure
>d1qgja_ a.93.1.1 (A:) Plant peroxidase {Mouse-ear cress (Arabidopsis thaliana), peroxidase N [TaxId: 3702]} Back     information, alignment and structure
>d1gwua_ a.93.1.1 (A:) Plant peroxidase {Horseradish (Armoracia rusticana) [TaxId: 3704]} Back     information, alignment and structure
>d1scha_ a.93.1.1 (A:) Plant peroxidase {Peanut (Arachis hypogaea) [TaxId: 3818]} Back     information, alignment and structure
>d1iyna_ a.93.1.1 (A:) Ascorbate peroxidase {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1oafa_ a.93.1.1 (A:) Ascorbate peroxidase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
>d1yyda1 a.93.1.1 (A:1-357) Fungal peroxidase (ligninase) {Basidomycetos fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d1llpa_ a.93.1.1 (A:) Fungal peroxidase (ligninase) {White rot basidiomycete (Phanerochaete chrysosporium) [TaxId: 5306]} Back     information, alignment and structure
>d2e39a1 a.93.1.1 (A:9-344) Fungal peroxidase (ligninase) {Arthromyces ramosus [TaxId: 5451]} Back     information, alignment and structure
>d2euta1 a.93.1.1 (A:4-294) Cytochrome c peroxidase, CCP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1mwva2 a.93.1.3 (A:441-748) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka2 a.93.1.3 (A:424-731) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1ub2a2 a.93.1.3 (A:427-720) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d1u2ka_ a.93.1.3 (A:) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1itka1 a.93.1.3 (A:18-423) Catalase-peroxidase KatG {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mwva1 a.93.1.3 (A:35-440) Catalase-peroxidase KatG {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d2ccaa1 a.93.1.3 (A:26-435) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ub2a1 a.93.1.3 (A:21-426) Catalase-peroxidase KatG {Synechococcus sp. pcc 7942 [TaxId: 1140]} Back     information, alignment and structure
>d2ccaa2 a.93.1.3 (A:436-720) Catalase-peroxidase KatG {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure