Citrus Sinensis ID: 021174

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSNDSSVTDNSNSPLEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHccccccccccccccHHHcccccccccccccccccccccHHHHHcccccccccccccccccHHHHHHHHHcccccccccHHHHHccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccHHHcccccHHHHHHHHccEcccccEcccccccHHHEEEEcccccccccccccccccHHHHHHHHHHHcccHHcccccccccccHHHHHHccccccccccccccccccccccccccEEEEccHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccEEcccccHHccccccHHHHHHHHHHHHccccEccHHHHHHHHHHHccccccccccccHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mskanvrrhileknrspkekepkptqsLLSKHLkkvypiglhrsssslslSSLSLSlsqnsndssvtdnsnsplEQRISLALRlitpperrevtvaknaqpqqQQQQQQQQsqdsccgelkrcnwitknNKVYVAFHdecwgvpvyddnqLFELLALSGMLMDYNWTEILKRKELFReafggfdpksvakMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGsfssfmwgyvnfkpminkfryprnvplrspkaEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCfrysecvslaerpwrhi
Flexible Loop (DISEMBL)
mskanvrrhileknrspkekepkptqsllsKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSndssvtdnsnsplEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGgfdpksvakmgEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFryprnvplrspkAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSEcvslaerpwrhi
Low Complexity Region (SEG)
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRsssslslsslslslsqnsndssvtdnsnsPLEQRISLALRLITPPERREVTVAKNAqpqqqqqqqqqqsqDSCCGELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Disordered region (IsUnstruct)
*******************************************************************************************************************CCGELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAE******
Disordered Region (DISOPRED)
*************************************************************************************************************************RCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLA*******
Disordered Region (DISEMBL)
MSKANVRRHILEKN*************LLSKHLKKVYPIGLHRSS***************************PLEQRISLALRLITPPERRE*************************GELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Disordered Region (DISPRO)
****************P**KEPKPTQSLLSKHLKKVYPIGLHR**************************SNSPLEQRISLALRLITPPER*EVT*************************LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERP****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKANVRRHILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRSSSSLSLSSLSLSLSQNSNDSSVTDNSNSPLEQRISLALRLITPPERREVTVAKNAQPQQQQQQQQQQSQDSCCGELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAERPWRHI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q7VG78	1375	Probable GMP synthase [gl	yes	no	0.604	0.138	0.395	6e-40
P44321	185	DNA-3-methyladenine glyco	yes	no	0.560	0.956	0.382	3e-34
P05100	187	DNA-3-methyladenine glyco	N/A	no	0.575	0.973	0.349	4e-34

>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 78/197 (39%), Positives = 115/197 (58%), Gaps = 6/197 (3%)

Query: 111 QSQDSCCG--ELKRCNWITKNN----KVYVAFHDECWGVPVYDDNQLFELLALSGMLMDY 164
           ++QDS  G  E  RC W T  +    K+Y  +HD  WG P+++D +LFE L L G     
Sbjct: 774 EAQDSNEGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGL 833

Query: 165 NWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK 224
           +W  ILK++E FR AF  FDP  VA   E +I E+  N  I+    ++   + NAK  + 
Sbjct: 834 SWITILKKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMA 893

Query: 225 ILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYS 284
           +  EFGSF  ++WG+V  KP+IN F    ++P  +P ++ I++DL KRGF+ VG   +Y+
Sbjct: 894 VQREFGSFDKYIWGFVGGKPIINAFESIADLPASTPLSDKIAKDLKKRGFKFVGTTTMYA 953

Query: 285 FMQAAGLTIDHLVDCFR 301
            MQ+ G+  DHL  CF+
Sbjct: 954 MMQSIGMVNDHLTSCFK 970

Catalyzes the synthesis of GMP from XMP.
Helicobacter hepaticus (strain ATCC 51449 / 3B1) (taxid: 235279)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: 2

>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 68/178 (38%), Positives = 107/178 (60%), Gaps = 1/178 (0%)

Query: 122 RCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFG 181
           RC W+ + + +Y+ +HD+ WG P +D  +LFE + L G     +W  +LK++E +REAF 
Sbjct: 4   RCPWVGEQS-IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAFH 62

Query: 182 GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVN 241
            FDPK +AKM   +I     N+ ++    ++  IV NAK  + +     +FS F+W +VN
Sbjct: 63  QFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAKAYLAMEKCGENFSDFIWSFVN 122

Query: 242 FKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
            KP++N     R+VP ++  ++A+S+ L KRGF  +G    Y+FMQ+ GL  DHL DC
Sbjct: 123 HKPIVNDVPDLRSVPTKTEVSKALSKALKKRGFVFIGETTCYAFMQSMGLVDDHLNDC 180

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

EC: 0

>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12) GN=tag PE=1 SV=1

 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/183 (34%), Positives = 108/183 (59%), Gaps = 1/183 (0%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC W++++  +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MERCGWVSQD-PLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F  F+W +
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFVDFVWSF 119

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN +P + +      +P  +  ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V C
Sbjct: 120 VNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 300 FRY 302
             Y
Sbjct: 180 CCY 182

Hydrolysis of the deoxyribose N-glycosidic bond to excise 3-methyladenine from the damaged DNA polymer formed by alkylation lesions.

Escherichia coli (strain K12) (taxid: 83333)

EC: 3

EC: .

EC: 2

EC: .

EC: 2

EC: .

EC: 2

EC: 0

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:1006230719	311	AT1G13635 [Arabidopsis thalian	0.977	0.993	0.613	1.5e-99
TAIR|locus:2174373	347	AT5G57970 [Arabidopsis thalian	0.604	0.550	0.5	4.8e-55
TAIR|locus:2037268	329	AT1G75090 [Arabidopsis thalian	0.613	0.589	0.512	7.8e-55
TAIR|locus:2025697	327	AT1G80850 [Arabidopsis thalian	0.693	0.669	0.462	4.9e-53
TAIR|locus:2200447	352	AT1G15970 [Arabidopsis thalian	0.601	0.539	0.523	1.7e-52
TAIR|locus:2156329	353	AT5G44680 [Arabidopsis thalian	0.591	0.529	0.473	1.4e-50
TAIR|locus:2087710	312	AT3G12710 [Arabidopsis thalian	0.601	0.608	0.461	4.4e-45
TIGR_CMR|CBU_0383	212	CBU_0383 "DNA-3-methyladenine	0.591	0.882	0.372	2.6e-38
TIGR_CMR|GSU_0567	191	GSU_0567 "DNA-3-methyladenine	0.582	0.963	0.389	2.6e-38
TIGR_CMR|SO_0016	191	SO_0016 "DNA-3-methyladenine g	0.579	0.958	0.380	1.7e-36

TAIR|locus:1006230719 AT1G13635 [Arabidopsis thaliana (taxid:3702)]

 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 195/318 (61%), Positives = 230/318 (72%)

Query:     1 MSKANVRR-HILEKNRSPKEKEPKPTQSLLSKHLKKVYPIGLHRXXXXXXXXXXXXXXXX 59
             M KA+ +R  I+EK++S +EKE K   +  +KHLK++YPI L R                
Sbjct:     1 MYKASPKRKEIVEKSKSVREKEIKQNSNFFAKHLKRIYPITLQRSTSSSFSLSSISLSLS 60

Query:    60 XXXXXXXXXXXXXPLEQRISLALRLITPPERREVTVAKNAXXXXXXXXXXXXXXDSCCGE 119
                           LEQ+ISLAL LI+ P RRE+ V K+                    E
Sbjct:    61 QNSTDSVSTDSNSTLEQKISLALGLISSPHRREIFVPKSIPQQLCQDFNSSD-------E 113

Query:   120 LKRCNWITK-NNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFRE 178
              KRCNWITK +++VYV FHD+ WGVPVYDDN LFE LA+SGMLMDYNWTEILKRKE FRE
Sbjct:   114 PKRCNWITKKSDEVYVMFHDQQWGVPVYDDNLLFEFLAMSGMLMDYNWTEILKRKEHFRE 173

Query:   179 AFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWG 238
             AF  FDP  VAKMGEKEI EI+SN AIML E RVRCIVDNAKCI K++NEFGSFSSF+WG
Sbjct:   174 AFCEFDPNRVAKMGEKEIAEIASNKAIMLQESRVRCIVDNAKCITKVVNEFGSFSSFVWG 233

Query:   239 YVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVD 298
             ++++KP+INKF+Y RNVPLRSPKAE IS+D++KRGFR VGPVIV+SFMQAAGLTIDHLVD
Sbjct:   234 FMDYKPIINKFKYSRNVPLRSPKAEIISKDMIKRGFRFVGPVIVHSFMQAAGLTIDHLVD 293

Query:   299 CFRYSECVSLAERPWRHI 316
             CFR+ +CVSLAERPWRHI
Sbjct:   294 CFRHGDCVSLAERPWRHI 311

GO:0003824 "catalytic activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA

TAIR|locus:2174373 AT5G57970 [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 4.8e-55, P = 4.8e-55
 Identities = 96/192 (50%), Positives = 140/192 (72%)

Query:   121 KRCNWITKNNK-VYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
             KRC W+T N+   Y+ FHDE WGVPV+DD +LFELL LSG L ++ W  IL +++ FRE 
Sbjct:   154 KRCTWVTPNSDPCYIVFHDEEWGVPVHDDKRLFELLVLSGALAEHTWPTILSKRQAFREV 213

Query:   180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
             F  FDP ++ K+ EK+I+   S  + +L++ ++R +++NA+ I+K++ E+GSF  ++W +
Sbjct:   214 FADFDPNAIVKINEKKIIGPGSPASTLLSDLKLRAVIENARQILKVIEEYGSFDKYIWSF 273

Query:   240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
             V  K +++KFRY R VP ++PKAE IS+DL++RGFR VGP +VYSFMQAAG+T DHL  C
Sbjct:   274 VKNKAIVSKFRYQRQVPAKTPKAEVISKDLVRRGFRSVGPTVVYSFMQAAGITNDHLTSC 333

Query:   300 FRYSECVSLAER 311
             FR+  C+   ER
Sbjct:   334 FRFHHCIFEHER 345

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2037268 AT1G75090 [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 100/195 (51%), Positives = 143/195 (73%)

Query:   118 GELKRCNWITKNNK-VYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELF 176
             G +KRC+WIT N+  +YV FHDE WGVPV DD +LFELL  S  L +++W  IL+R++ F
Sbjct:   116 GPVKRCHWITPNSDPIYVLFHDEEWGVPVRDDKKLFELLVFSQALAEFSWPSILRRRDDF 175

Query:   177 REAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFM 236
             R+ F  FDP ++A+  EK ++ +  N  ++L+E ++R IV+NAK ++K+  EFGSFS++ 
Sbjct:   176 RKLFEEFDPSAIAQFTEKRLMSLRVNGCLILSEQKLRAIVENAKSVLKVKQEFGSFSNYC 235

Query:   237 WGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL 296
             W +VN KP+ N +RY R VP++SPKAE IS+D+++RGFR VGP ++YSF+QA+G+  DHL
Sbjct:   236 WRFVNHKPLRNGYRYGRQVPVKSPKAEYISKDMMQRGFRCVGPTVMYSFLQASGIVNDHL 295

Query:   297 VDCFRYSECVSLAER 311
               CFRY EC    ER
Sbjct:   296 TACFRYQECNVETER 310

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2025697 AT1G80850 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 104/225 (46%), Positives = 154/225 (68%)

Query:    90 RREVTVAKNAXXXXXXXXXXXXXXDSC-CGELKRCNWIT-KNNKVYVAFHDECWGVPVYD 147
             RR  +V+ ++                C C   KRC WIT K+++ Y+AFHDE WGVPV+D
Sbjct:   102 RRSGSVSSSSSLRRNLTEERDEKASDCFCDGRKRCAWITPKSDQCYIAFHDEEWGVPVHD 161

Query:   148 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEIL--EISSNTAI 205
             D +LFELL+LSG L + +W +IL +++LFRE F  FDP +++++  K+I   EI++ T  
Sbjct:   162 DKRLFELLSLSGALAELSWKDILSKRQLFREVFMDFDPIAISELTNKKITSPEIAATT-- 219

Query:   206 MLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAI 265
             +L+E ++R I++NA  + KI+  FGSF  ++W +VN KP  ++FRYPR VP+++ KAE I
Sbjct:   220 LLSEQKLRSILENANQVCKIIGAFGSFDKYIWNFVNQKPTQSQFRYPRQVPVKTSKAELI 279

Query:   266 SRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSECVSLAE 310
             S+DL++RGFR V P ++YSFMQ AGLT DHL  CFR+ +C++  E
Sbjct:   280 SKDLVRRGFRSVSPTVIYSFMQTAGLTNDHLTCCFRHHDCMTKDE 324

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TAIR|locus:2200447 AT1G15970 [Arabidopsis thaliana (taxid:3702)]

 Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
 Identities = 100/191 (52%), Positives = 138/191 (72%)

Query:   121 KRCNWIT-KNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
             KRC WIT K +  YVAFHDE WGVPV+DD +LFELL LSG L + +WT+IL R+ + RE 
Sbjct:   145 KRCAWITPKADPCYVAFHDEEWGVPVHDDKKLFELLCLSGALAELSWTDILSRRHILREV 204

Query:   180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
             F  FDP +VA++ +K++    +    +L+E ++R I+DN++ + KI+ E GS   +MW +
Sbjct:   205 FMDFDPVAVAELNDKKLTAPGTAAISLLSEVKIRSILDNSRHVRKIIAECGSLKKYMWNF 264

Query:   240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
             VN KP  ++FRY R VP+++ KAE IS+DL++RGFR V P ++YSFMQAAGLT DHL+ C
Sbjct:   265 VNNKPTQSQFRYQRQVPVKTSKAEFISKDLVRRGFRSVSPTVIYSFMQAAGLTNDHLIGC 324

Query:   300 FRYSECVSLAE 310
             FRY +C   AE
Sbjct:   325 FRYQDCCVDAE 335

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

TAIR|locus:2156329 AT5G44680 [Arabidopsis thaliana (taxid:3702)]

 Score = 499 (180.7 bits), Expect = 1.4e-50, Sum P(2) = 1.4e-50
 Identities = 90/190 (47%), Positives = 138/190 (72%)

Query:   121 KRCNWIT-KNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
             KRC++IT  ++ +YVA+HD+ WGVPV+DDN LFELL L+G  +  +WT +LKR+  FREA
Sbjct:   164 KRCSFITTSSDPIYVAYHDKEWGVPVHDDNLLFELLVLTGAQVGSDWTSVLKRRNTFREA 223

Query:   180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
             F GF+ + VA   EK+I  I ++  I L++  V  +VDNAK I+K+  + GSF+ ++WG+
Sbjct:   224 FSGFEAELVADFNEKKIQSIVNDYGINLSQ--VLAVVDNAKQILKVKRDLGSFNKYIWGF 281

Query:   240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
             +  KP+  K+   + +P+++ K+E IS+D+++RGFR VGP +++S MQAAGLT DHL+ C
Sbjct:   282 MKHKPVTTKYTSCQKIPVKTSKSETISKDMVRRGFRFVGPTVIHSLMQAAGLTNDHLITC 341

Query:   300 FRYSECVSLA 309
              R+ EC ++A
Sbjct:   342 PRHLECTAMA 351

GO:0003824 "catalytic activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0009637 "response to blue light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2087710 AT3G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
 Identities = 89/193 (46%), Positives = 136/193 (70%)

Query:   121 KRCNWITK-NNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
             +RC+++T  ++ +YVA+HDE WGVPV+DD  LFELL LSG  +  +WT  L+++  +R+A
Sbjct:   122 QRCSFLTPTSDPIYVAYHDEEWGVPVHDDKTLFELLTLSGAQVGSDWTSTLRKRHDYRKA 181

Query:   180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
             F  F+ + VAK+ EKE+  IS    I ++  +VR +V+NAK IV+I   F S   ++WG+
Sbjct:   182 FMEFEAEVVAKLTEKEMNAISIEYKIEMS--KVRGVVENAKKIVEIKKAFVSLEKYLWGF 239

Query:   240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
             VN KP+   ++    +P+++ K+E+IS+D+++RGFR VGP +V+SFMQAAGLT DHL+ C
Sbjct:   240 VNHKPISTNYKLGHKIPVKTSKSESISKDMVRRGFRFVGPTVVHSFMQAAGLTNDHLITC 299

Query:   300 FRYSECVSLAERP 312
              R++ C  LA  P
Sbjct:   300 CRHAPCTLLATNP 312

GO:0003824 "catalytic activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA;ISS

GO:0006284 "base-excision repair" evidence=IEA

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=IEA;ISS

GO:0006306 "DNA methylation" evidence=RCA

TIGR_CMR|CBU_0383 CBU_0383 "DNA-3-methyladenine glycosidase I" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 70/188 (37%), Positives = 120/188 (63%)

Query:   121 KRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 180
             +RC W++ N+ +Y+ +HD  WGVP+YDD  LFE L L GM    +W  ILK++  +R++F
Sbjct:    19 ERCAWVS-NDPLYIHYHDLEWGVPIYDDRLLFEFLILEGMQAGLSWLTILKKRNNYRDSF 77

Query:   181 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 240
               FD   ++K   ++I  +  N  I+  + +++  ++NAK  +++  E+ +FS ++W +V
Sbjct:    78 NNFDASIISKYNPRKIDRLLENAGIIRNKLKIQATINNAKAFLEVKKEWRNFSDYIWHFV 137

Query:   241 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCF 300
             +  P+ N+++  + +P RS  ++ +S+DL KRGF+ VG  I Y+FMQA G+  DH  +CF
Sbjct:   138 DGHPIQNQWKNAKQIPTRSAISDVLSKDLKKRGFKFVGSTICYAFMQAVGMVNDHTTNCF 197

Query:   301 RYSECVSL 308
             RY E  +L
Sbjct:   198 RYEEIKNL 205

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

TIGR_CMR|GSU_0567 GSU_0567 "DNA-3-methyladenine glycosylase I" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 72/185 (38%), Positives = 117/185 (63%)

Query:   120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
             ++RC W    + +YVA+HD  WGVP +DD  LFE+L L G     +W  IL+++E +R A
Sbjct:     2 IQRCEWCG-TDPLYVAYHDGEWGVPAHDDRHLFEMLILEGAQAGLSWLTILRKREAYRRA 60

Query:   180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
             F GFD ++VA   E ++  + ++  I+    ++   + NA+ ++KI  EFGS  +++W +
Sbjct:    61 FAGFDAETVAAWSEADVARLLADPGIVRNRLKIESTIRNARGVLKIREEFGSLDAYLWRF 120

Query:   240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
             V+  P  N +R   ++P R+ +++A+S+DL +RGF  VG  I Y+FMQA G+  DH+V C
Sbjct:   121 VDHAPRHNAWRSLTDIPARTEQSDAMSKDLKRRGFNFVGSTICYAFMQAVGMVNDHVVHC 180

Query:   300 FRYSE 304
             FR+ E
Sbjct:   181 FRHDE 185

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

TIGR_CMR|SO_0016 SO_0016 "DNA-3-methyladenine glycosidase I" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
 Identities = 70/184 (38%), Positives = 110/184 (59%)

Query:   122 RCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFG 181
             RCNW++ ++ +Y  +HD  WG PVYD  +LF  L L G     +W  ILK+++ + +AF 
Sbjct:     5 RCNWVS-DDPLYRDYHDNVWGRPVYDPKELFAKLCLDGQQAGLSWITILKKQQNYEQAFA 63

Query:   182 GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVN 241
              F+P  +A   + ++ E+ +N  I+    ++  I+ NAK  +    +   FS+F+W +V 
Sbjct:    64 DFEPAVIATFDDAKVEELMANPGIVRNRLKIHSIIRNAKGYLAYTADGEDFSAFLWSFVG 123

Query:   242 FKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFR 301
              KP +N+F     +P ++P++EA+S+ L K GF  VGP I Y+FMQA G+  DHLVDC  
Sbjct:   124 GKPRVNQFTSMSQIPAQTPESEAMSKALKKLGFNFVGPTICYAFMQAVGMVNDHLVDCVA 183

Query:   302 YSEC 305
             Y  C
Sbjct:   184 YDAC 187

GO:0006281 "DNA repair" evidence=ISS

GO:0008725 "DNA-3-methyladenine glycosylase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.2.2.20	LOW CONFIDENCE prediction!
3rd Layer	3.2.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.1__1480__AT1G13635.1 annotation not avaliable (310 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
pfam03352	179	pfam03352, Adenine_glyco, Methyladenine glycosylas	4e-94
COG2818	188	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA	9e-60
TIGR00624	179	TIGR00624, tag, DNA-3-methyladenine glycosylase I	2e-48
PRK10353	187	PRK10353, PRK10353, 3-methyl-adenine DNA glycosyla	1e-46

>gnl|CDD|190612 pfam03352, Adenine_glyco, Methyladenine glycosylase

 Score =  276 bits (708), Expect = 4e-94
 Identities = 87/180 (48%), Positives = 129/180 (71%), Gaps = 1/180 (0%)

Query: 125 WITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFD 184
           W T +  +YVA+HDE WGVPV+DD +LFELL L G     +W  ILK++E FREAF GFD
Sbjct: 1   WATSD-PLYVAYHDEEWGVPVHDDRKLFELLCLEGFQAGLSWITILKKREAFREAFAGFD 59

Query: 185 PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKP 244
           P+ VA   E ++  + ++  I+    ++   ++NA+ I+K+  EFGSFS+++W +V+ KP
Sbjct: 60  PEKVAAFTEADVERLLADPGIIRNRLKIEATINNARAILKLQEEFGSFSAYLWSFVDGKP 119

Query: 245 MINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFRYSE 304
           ++N+++    VP ++P ++AIS+DL KRGF+ VGP IVY+FMQA G+  DHLVDCFR++E
Sbjct: 120 IVNRWKSLAEVPAKTPLSDAISKDLKKRGFKFVGPTIVYAFMQAVGMVNDHLVDCFRHAE 179

The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA. Length = 179

>gnl|CDD|225374 COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

 Score =  189 bits (481), Expect = 9e-60
 Identities = 76/186 (40%), Positives = 116/186 (62%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           + RC W    + +Y+A+HD  WGVP++DD +LFELL L G     +W  +LK++E FREA
Sbjct: 1   MNRCAWAGGLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREA 60

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F GFDP+ VA M E+++  + ++  I+    +++  ++NA+ ++++  EFGSFS F+W +
Sbjct: 61  FHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWSF 120

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           V  KP  N+      VP  +  ++A+S+ L KRGF+ VGP  VY+FMQA GL  DH   C
Sbjct: 121 VGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFKFVGPTTVYAFMQATGLVNDHAEGC 180

Query: 300 FRYSEC 305
               E 
Sbjct: 181 PCRREI 186

Length = 188

>gnl|CDD|129711 TIGR00624, tag, DNA-3-methyladenine glycosylase I

 Score =  159 bits (404), Expect = 2e-48
 Identities = 61/181 (33%), Positives = 104/181 (57%), Gaps = 3/181 (1%)

Query: 122 RCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFG 181
           RC W +  + +Y A+HD  WGVP+ D   LFE ++L G     +W  +L+++E +R AF 
Sbjct: 2   RCGWAS-VDPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAFS 60

Query: 182 GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVN 241
           GFD   VA+M + ++  +  +  I+    ++   + NA+  +++  E      F+W +VN
Sbjct: 61  GFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQL--EQNDLVEFLWSFVN 118

Query: 242 FKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCFR 301
            +P   +      +P  +P+++A+S++L KRGFR VGP I Y+ MQA G+  DH+  C+ 
Sbjct: 119 HQPQPRQRPTDSEIPSSTPESKAMSKELKKRGFRFVGPTICYALMQATGMVDDHIQGCWV 178

Query: 302 Y 302
           Y
Sbjct: 179 Y 179

All proteins in this family are alkylation DNA glycosylases that function in base excision repair This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 179

>gnl|CDD|182401 PRK10353, PRK10353, 3-methyl-adenine DNA glycosylase I; Provisional

 Score =  155 bits (393), Expect = 1e-46
 Identities = 64/181 (35%), Positives = 109/181 (60%), Gaps = 1/181 (0%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC W++++  +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MERCGWVSQD-PLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W +
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V C
Sbjct: 120 VNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 300 F 300
            
Sbjct: 180 C 180

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PRK10353	187	3-methyl-adenine DNA glycosylase I; Provisional	100.0
TIGR00624	179	tag DNA-3-methyladenine glycosylase I. This family	100.0
COG2818	188	Tag 3-methyladenine DNA glycosylase [DNA replicati	100.0
PF03352	179	Adenine_glyco: Methyladenine glycosylase; InterPro	100.0
cd00056	158	ENDO3c endonuclease III; includes endonuclease III	95.55
TIGR03252	177	uncharacterized HhH-GPD family protein. This model	95.39
TIGR01083	191	nth endonuclease III. This equivalog model identif	94.29
smart00478	149	ENDO3c endonuclease III. includes endonuclease III	94.05
PRK13913	218	3-methyladenine DNA glycosylase; Provisional	92.84
TIGR01084	275	mutY A/G-specific adenine glycosylase. This equiva	88.09
PRK10702	211	endonuclease III; Provisional	87.26
COG0177	211	Nth Predicted EndoIII-related endonuclease [DNA re	86.61
PF00730	108	HhH-GPD: HhH-GPD superfamily base excision DNA rep	85.7

>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional

Probab=100.00  E-value=1.1e-88  Score=608.78  Aligned_cols=184  Identities=35%  Similarity=0.771  Sum_probs=180.2

Q ss_pred             CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174          120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  199 (316)
Q Consensus       120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL  199 (316)
                      |.||.|++ ++|+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||++|||++||+|+|+|||+|
T Consensus         1 m~rC~W~~-~~~l~~~YHD~eWG~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~Fd~~~VA~~~e~die~L   79 (187)
T PRK10353          1 MERCGWVS-QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERL   79 (187)
T ss_pred             CCCCCCCC-CChHHHHhhhccCCCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            46999997 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                      |+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|.+.+..++|++|++|++|||+||||||+||||
T Consensus        80 l~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW~fv~~~p~~~~~~~~~~~P~~t~~S~~lskdLKkrGFkFvGp  159 (187)
T PRK10353         80 VQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGT  159 (187)
T ss_pred             hcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhccCCCcccCCccchhcCCCCCHHHHHHHHHHHHcCCcccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccchh
Q 021174          280 VIVYSFMQAAGLTIDHLVDCFRYSE  304 (316)
Q Consensus       280 tt~ysfMQAvG~vnDHl~~C~r~~~  304 (316)
                      |||||||||+||||||+++|+++..
T Consensus       160 t~~ysfmqA~G~vndH~~~C~~~~~  184 (187)
T PRK10353        160 TICYSFMQACGLVNDHVVGCCCHPG  184 (187)
T ss_pred             HHHHHHHHHHCCccccccCccccCC
Confidence            9999999999999999999999853

>TIGR00624 tag DNA-3-methyladenine glycosylase I

Probab=100.00  E-value=1.5e-86  Score=591.63  Aligned_cols=179  Identities=34%  Similarity=0.760  Sum_probs=175.7

Q ss_pred             ccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhh
Q 021174          121 KRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEIS  200 (316)
Q Consensus       121 ~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm  200 (316)
                      .||.|++ ++|+|++|||+|||+|+|||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|++||+||
T Consensus         1 ~rC~W~~-~~~l~~~YHD~eWG~p~~dd~~LFE~L~Le~fQAGLSW~tIL~Kr~~fr~aF~~Fd~~~VA~~~e~~ie~L~   79 (179)
T TIGR00624         1 VRCGWAS-VDPLYRAYHDNEWGVPLRDSVALFERMSLEGFQAGLSWITVLRKRENYRRAFSGFDIVKVARMTDADVERLL   79 (179)
T ss_pred             CCCCCcC-CChHHHHhhhccCCCcCcCCHHHHHHHHHHHHhCcCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHHh
Confidence            4899997 579999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChh
Q 021174          201 SNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPV  280 (316)
Q Consensus       201 ~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPt  280 (316)
                      +|++|||||+||+|||+|||++++|++|  ||++|+|+||+++||+|++....++|++|++|++|||+||||||+|||||
T Consensus        80 ~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW~fv~~~Pi~~~~~~~~~~p~~t~~S~~lskdLKkrGfkFvGpt  157 (179)
T TIGR00624        80 QDDGIIRNRGKIEATIANARAALQLEQN--DLVEFLWSFVNHQPQPRQRPTDSEIPSSTPESKAMSKELKKRGFRFVGPT  157 (179)
T ss_pred             cCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHHhccCCCCccCCccccccCCCCCHHHHHHHHHHHHcCCeecChH
Confidence            9999999999999999999999999887  99999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhccccccccccccc
Q 021174          281 IVYSFMQAAGLTIDHLVDCFRY  302 (316)
Q Consensus       281 t~ysfMQAvG~vnDHl~~C~r~  302 (316)
                      ||||||||+||||||+++|+++
T Consensus       158 ~~ysfmqA~G~vndH~~~C~~~  179 (179)
T TIGR00624       158 ICYALMQATGMVDDHIQGCWVY  179 (179)
T ss_pred             HHHHHHHHHCCccccccCCcCC
Confidence            9999999999999999999985

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]

Probab=100.00  E-value=2.8e-85  Score=585.19  Aligned_cols=186  Identities=41%  Similarity=0.812  Sum_probs=181.6

Q ss_pred             CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174          120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  199 (316)
Q Consensus       120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL  199 (316)
                      +.||.|+...+|+|.+|||+|||+|++||+.|||+||||||||||||.|||+|||+||+||++|||++||.|+|+|||+|
T Consensus         1 ~~rC~w~~~~~ply~~YHD~eWG~p~~Dd~~LFE~l~Le~fQAGLSW~tVL~KRe~freaF~~Fd~~kVA~~~~~dverL   80 (188)
T COG2818           1 MNRCAWAGGLDPLYLAYHDTEWGVPLHDDQRLFELLCLEGFQAGLSWLTVLKKREAFREAFHGFDPEKVAAMTEEDVERL   80 (188)
T ss_pred             CCcccccCCCCchhhcccccccCCCCCChHHHHHHHHHHHHhccchHHHHHHhHHHHHHHHhcCCHHHHHcCCHHHHHHH
Confidence            46999997547999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                      |+|++|||||+||.|||+|||++++|++|+|||++|||+||+++|.++++.+..++|+.|++|++|||+||||||+||||
T Consensus        81 l~d~gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~flWsf~~~~~~~~~~~~~~~~pa~t~~S~~mskaLKkrGf~fvGp  160 (188)
T COG2818          81 LADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFLWSFVGGKPSRNQVNDGSEVPASTELSDAMSKALKKRGFKFVGP  160 (188)
T ss_pred             HhCcchhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhcCCCcccccccchhhccccchhHHHHHHHHHHccCeecCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccchhh
Q 021174          280 VIVYSFMQAAGLTIDHLVDCFRYSEC  305 (316)
Q Consensus       280 tt~ysfMQAvG~vnDHl~~C~r~~~~  305 (316)
                      ||||+||||+|+||||+.+|+++..+
T Consensus       161 Tt~yafmqA~G~vndH~~~C~~~~~~  186 (188)
T COG2818         161 TTVYAFMQATGLVNDHAEGCPCRREI  186 (188)
T ss_pred             HHHHHHHHHHcchHHHHhcCCCcccc
Confidence            99999999999999999999998653

>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3

Probab=100.00  E-value=1.4e-84  Score=579.05  Aligned_cols=179  Identities=51%  Similarity=0.990  Sum_probs=154.2

Q ss_pred             CCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCc
Q 021174          125 WITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTA  204 (316)
Q Consensus       125 Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~  204 (316)
                      |+. ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||+|+|+||++||+|++
T Consensus         1 W~~-~~~~~~~YHD~eWG~P~~dD~~LFe~L~Le~fQaGLsW~~Il~Kr~~~r~aF~~Fd~~~vA~~~e~~ie~l~~d~~   79 (179)
T PF03352_consen    1 WAN-SDPLYRAYHDEEWGRPVHDDRKLFEMLTLEGFQAGLSWSTILKKREAFREAFAGFDPEKVAKMDEEDIERLMQDPG   79 (179)
T ss_dssp             TTT-SSHHHHHHHHHTTTSS---HHHHHHHHHHHHHTTTS-HHHHHHTHHHHHHHTGGGHHHHHHT--HHHHHHHTTSTT
T ss_pred             CCC-CChHHHHHhcccCCCcccCHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHCCCHHHHHcCCHHHHHHHhcCcc
Confidence            886 4699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHH
Q 021174          205 IMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYS  284 (316)
Q Consensus       205 IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ys  284 (316)
                      |||||+||+|||+||+++++|++++|||++|||+||+++||++.+.+..++|++|++|++|||+|||+||+|||||||||
T Consensus        80 iIRnr~KI~Avi~NA~~~l~i~~e~gsF~~ylw~f~~~~~i~~~~~~~~~~p~~t~~s~~isk~lkk~GF~FvGpt~vys  159 (179)
T PF03352_consen   80 IIRNRRKIRAVINNARAILKIQEEFGSFSDYLWSFVNGKPIVNHWRSPEDVPASTPLSEAISKDLKKRGFKFVGPTTVYS  159 (179)
T ss_dssp             SS--HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHCTTTS-EE---SSGGGS-S--HHHHHHHHHHHHTT--S--HHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCcCccccccccccCcCccHHHHHHHHHHHhCcceeECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccccccccccccchh
Q 021174          285 FMQAAGLTIDHLVDCFRYSE  304 (316)
Q Consensus       285 fMQAvG~vnDHl~~C~r~~~  304 (316)
                      ||||+||||||+++|++|.+
T Consensus       160 flqA~G~vndH~~~C~~~~~  179 (179)
T PF03352_consen  160 FLQAIGMVNDHLVDCFRHQE  179 (179)
T ss_dssp             HHHHTTSEE-SSTTSTTS--
T ss_pred             HHHHhCCccccccCccccCC
Confidence            99999999999999999864

2.2.20 from EC) which acts as a base excision repair enzyme by severing the glycosylic bond of numerous damaged bases. The enzyme is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.; GO: 0008725 DNA-3-methyladenine glycosylase I activity, 0006284 base-excision repair; PDB: 2OFI_A 2OFK_A 2JG6_A 4AIA_E 4AI5_C 4AI4_A 1LMZ_A 1P7M_A 1NKU_A.

>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

Probab=95.55  E-value=0.1  Score=44.34  Aligned_cols=104  Identities=21%  Similarity=0.248  Sum_probs=79.8

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCC
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  231 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GS  231 (316)
                      ||.|+-.++..-.||..+.+-...|.+.|. .+|+.|+..+++++..+...-|   .+.|.+.++.=|+.+.+   .+++
T Consensus         1 ~e~Li~~il~q~~s~~~a~~~~~~l~~~~g-pt~~~l~~~~~~~l~~~~~~~G---~~~kA~~i~~~a~~~~~---~~~~   73 (158)
T cd00056           1 FEVLVSEILSQQTTDKAVNKAYERLFERYG-PTPEALAAADEEELRELIRSLG---YRRKAKYLKELARAIVE---GFGG   73 (158)
T ss_pred             CHHHHHHHHHhcccHHHHHHHHHHHHHHhC-CCHHHHHCCCHHHHHHHHHhcC---hHHHHHHHHHHHHHHHH---HcCC
Confidence            678888888888999999999999998886 7999999999999999877766   57899999888888753   4444


Q ss_pred             HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021174          232 FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  290 (316)
Q Consensus       232 F~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG  290 (316)
                      +..      +               .     +.+-+.|.  .++=|||-|+-.+|.-+.
T Consensus        74 ~~~------~---------------~-----~~~~~~L~--~l~GIG~~tA~~~l~~~~  104 (158)
T cd00056          74 LVL------D---------------D-----PDAREELL--ALPGVGRKTANVVLLFAL  104 (158)
T ss_pred             ccC------C---------------C-----cccHHHHH--cCCCCCHHHHHHHHHHHC
Confidence            332      0               0     12334555  478899999988877543

>TIGR03252 uncharacterized HhH-GPD family protein

Probab=95.39  E-value=0.32  Score=44.36  Aligned_cols=117  Identities=15%  Similarity=0.204  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCC-Ccccc-chhhHHHHHHhHHHHHHHHHh
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSN-TAIML-AECRVRCIVDNAKCIVKILNE  228 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d-~~IIR-nr~KI~AvI~NAra~l~i~~e  228 (316)
                      -||.|+--+.-+--+|..|.+=-+.+.+.+...||+.+++++.++|++++.. |++.+ .+.|=+-+.+=|+.+   .++
T Consensus        18 pFelLVa~ILSQqTtd~nv~kA~~~L~~~~g~~tp~~La~a~~eeL~~lI~~~pal~Gfy~~KAk~Lk~~a~~i---ie~   94 (177)
T TIGR03252        18 PFALLTGMLLDQQVPMERAFAGPHKIARRMGSLDAEDIAKYDPQAFVALFSERPAVHRFPGSMAKRVQALAQYV---VDT   94 (177)
T ss_pred             hHHHHHHHHHhccCcHHHHHHHHHHHHHHhCCCCHHHHHcCCHHHHHHHHhcCccccCchHHHHHHHHHHHHHH---HHH
Confidence            3899999999999999999987777755444489999999999999999874 45444 235555555555555   346


Q ss_pred             cCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021174          229 FGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  290 (316)
Q Consensus       229 ~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG  290 (316)
                      ||+=-+-||..              .+|.    ...+-+.|.+  ++=|||.|+--+|.-.|
T Consensus        95 y~G~v~~L~~~--------------~~p~----t~~lre~Ll~--LpGVG~KTAnvVL~~l~  136 (177)
T TIGR03252        95 YDGDATAVWTE--------------GDPD----GKELLRRLKA--LPGFGKQKAKIFLALLG  136 (177)
T ss_pred             hCCChhhhhcc--------------cCCC----cHHHHHHHHc--CCCCCHHHHHHHHHHHH
Confidence            55433334432              0121    2233456665  78999999999888776

This model describes a small, well-conserved bacterial protein family. Its sequence largely consists of a domain, HhH-GPD, found in a variety of related base excision DNA repair enzymes (see pfam00730).

>TIGR01083 nth endonuclease III

Probab=94.29  E-value=0.59  Score=41.83  Aligned_cols=101  Identities=21%  Similarity=0.308  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  230 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G  230 (316)
                      -||.|+-++.-.--+|..+.+--..+.+.|-  +|+.|+..+++++++++.--|.-+  .|.+.+++=|+++.+   ++|
T Consensus        26 pf~~Li~~ILsqqt~~~~~~~~~~~l~~~~p--t~~~l~~~~~~~L~~~ir~~G~~~--~Ka~~i~~~a~~i~~---~~~   98 (191)
T TIGR01083        26 PFELLVATILSAQATDKSVNKATKKLFEVYP--TPQALAQAGLEELEEYIKSIGLYR--NKAKNIIALCRILVE---RYG   98 (191)
T ss_pred             HHHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHhcCChH--HHHHHHHHHHHHHHH---HcC
Confidence            4899999999899999999988888877664  899999999999999888767654  677777777777643   332


Q ss_pred             CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174          231 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  289 (316)
Q Consensus       231 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv  289 (316)
                      +                      .+|.       .-+.|.+  ++-|||.|+..+|.-.
T Consensus        99 ~----------------------~~~~-------~~~~L~~--l~GIG~ktA~~ill~~  126 (191)
T TIGR01083        99 G----------------------EVPE-------DREELVK--LPGVGRKTANVVLNVA  126 (191)
T ss_pred             C----------------------CCch-------HHHHHHh--CCCCcHHHHHHHHHHH
Confidence            1                      1121       1234554  7889999988877433

This equivalog model identifes nth members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>smart00478 ENDO3c endonuclease III

Probab=94.05  E-value=0.55  Score=39.63  Aligned_cols=88  Identities=24%  Similarity=0.354  Sum_probs=65.0

Q ss_pred             ccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCc
Q 021174          164 YNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFK  243 (316)
Q Consensus       164 LSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~k  243 (316)
                      .+|..+.+--..|.+.|-  +|+.++..++++|++++..-+  -.+.|.+.+++.|+.+.+   ++++            
T Consensus         5 ~~~~~a~~~~~~l~~~~~--~~~~l~~~~~~eL~~~l~~~g--~~~~ka~~i~~~a~~~~~---~~~~------------   65 (149)
T smart00478        5 TSDEAVNKATERLFEKFP--TPEDLAAADEEELEELIRPLG--FYRRKAKYLIELARILVE---EYGG------------   65 (149)
T ss_pred             ccHHHHHHHHHHHHHHCC--CHHHHHCCCHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHH---HHCC------------
Confidence            467888888888888887  799999999999999887644  346689999999988754   2211            


Q ss_pred             cccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174          244 PMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  289 (316)
Q Consensus       244 pi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv  289 (316)
                                .+|       ...+.|.+  ++-|||-|+-.||.-+
T Consensus        66 ----------~~~-------~~~~~L~~--l~GIG~~tA~~~l~~~   92 (149)
T smart00478       66 ----------EVP-------DDREELLK--LPGVGRKTANAVLSFA   92 (149)
T ss_pred             ----------Ccc-------HHHHHHHc--CCCCcHHHHHHHHHHH
Confidence                      012       12355654  8999999998887665

includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases

>PRK13913 3-methyladenine DNA glycosylase; Provisional

Probab=92.84  E-value=1.6  Score=40.71  Aligned_cols=77  Identities=21%  Similarity=0.330  Sum_probs=59.8

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhc-----CCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHH
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFG-----GFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKIL  226 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~-----~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~  226 (316)
                      ||.|+-.+.-.--+|..|.+--+++++++.     .-+|+.|+.+++++|++++.-.|.-  |.|.+.+.+=|+.+.   
T Consensus        31 fevLV~aILsQqT~~~~v~~a~~~L~~~~~~~~~~~~t~e~L~~a~~eeL~~~Irp~Gf~--~~KA~~Lk~la~~i~---  105 (218)
T PRK13913         31 FEALLGAVLTQNTKFEAVEKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFY--NQKAKRLIDLSENIL---  105 (218)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccccCCCHHHHHcCCHHHHHHHHHhcCCH--HHHHHHHHHHHHHHH---
Confidence            788888877777889999888888877763     2389999999999999999888764  556667766677664   


Q ss_pred             HhcCCHH
Q 021174          227 NEFGSFS  233 (316)
Q Consensus       227 ~e~GSF~  233 (316)
                      +++|+++
T Consensus       106 ~~~g~~~  112 (218)
T PRK13913        106 KDFGSFE  112 (218)
T ss_pred             HHcCCch
Confidence            4667765

>TIGR01084 mutY A/G-specific adenine glycosylase

Probab=88.09  E-value=4.4  Score=38.97  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=56.6

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      .|+.|+-|++-.=-+|.+|..-.+.|.+.|-  +|+.+|..++++|..+..--|.- +  |.+.+.+=|+.+.
T Consensus        26 py~vlvseIL~QQT~v~~v~~~~~rl~~~fp--t~~~La~a~~eeL~~~~~~lG~y-~--RAr~L~~~A~~i~   93 (275)
T TIGR01084        26 PYRVWLSEVMLQQTQVATVIPYFERFLERFP--TVQALANAPQDEVLKLWEGLGYY-A--RARNLHKAAQEVV   93 (275)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhCC--CHHHHHCcCHHHHHHHHHHCCcH-H--HHHHHHHHHHHHH
Confidence            5899999999999999999999999999884  69999999999999998877875 3  4556665556553

This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.

>PRK10702 endonuclease III; Provisional

Probab=87.26  E-value=2.6  Score=38.86  Aligned_cols=69  Identities=10%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      -||.|+-++.-+--+|..|.+--+.+.+.|  .+|+.+++.++++|++++.--|.-+.|.|  .+++.|+.++
T Consensus        29 p~e~lvs~iLsq~t~~~~v~~~~~~L~~~~--pt~e~l~~a~~~~l~~~i~~~G~y~~kA~--~l~~~a~~i~   97 (211)
T PRK10702         29 PFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGLYNSKAE--NVIKTCRILL   97 (211)
T ss_pred             hHHHHHHHHHHhhcCHHHHHHHHHHHHHHc--CCHHHHHCCCHHHHHHHHHHcCCHHHHHH--HHHHHHHHHH
Confidence            499999999988899999998888887665  47899999999999999887776555554  5666777764

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair]

Probab=86.61  E-value=4.3  Score=38.02  Aligned_cols=101  Identities=21%  Similarity=0.289  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC-CHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHh
Q 021174          150 QLFELLALSGMLMDYNWTEILKRKELFREAFGGF-DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNE  228 (316)
Q Consensus       150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~F-D~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e  228 (316)
                      --||+|+--+.-|-=+=..+-+   +.++.|.-| +|+.++..++++|+.+...-|+-||++|  .|+.=|+.++   ++
T Consensus        28 ~pf~lLva~iLSaqttD~~vn~---at~~Lf~~~~t~e~l~~a~~~~l~~~I~~iGlyr~KAk--~I~~~~~~l~---e~   99 (211)
T COG0177          28 DPFELLVAVILSAQTTDEVVNK---ATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAK--NIKELARILL---EK   99 (211)
T ss_pred             CcHHHHHHHHHhccCchHHHHH---HHHHHHHHcCCHHHHHcCCHHHHHHHHHhcCCcHHHHH--HHHHHHHHHH---HH
Confidence            3478776555444444444444   444444444 4999999999999999998888776554  6777777764   56


Q ss_pred             cCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174          229 FGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  289 (316)
Q Consensus       229 ~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv  289 (316)
                      ||+                      +||..-       ++|-+  .--||+-|++=.|.-+
T Consensus       100 ~~g----------------------~vP~~~-------~eL~~--LPGVGrKTAnvVL~~a  129 (211)
T COG0177         100 FGG----------------------EVPDTR-------EELLS--LPGVGRKTANVVLSFA  129 (211)
T ss_pred             cCC----------------------CCCchH-------HHHHh--CCCcchHHHHHHHHhh
Confidence            666                      334311       12332  4569999999888764

>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4

Probab=85.70  E-value=4.6  Score=32.11  Aligned_cols=63  Identities=17%  Similarity=0.224  Sum_probs=52.2

Q ss_pred             HhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          159 GMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       159 gfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      ++..-.+|..+.+-...|.+.|...+|+.|+..++++|.++...-|+  ++.|-+.+++=|+.++
T Consensus         4 Il~qq~s~~~a~~~~~~l~~~~g~pt~~~l~~~~~~el~~~i~~~G~--~~~ka~~i~~~a~~~~   66 (108)
T PF00730_consen    4 ILSQQTSIKAARKIYRRLFERYGFPTPEALAEASEEELRELIRPLGF--SRRKAKYIIELARAIL   66 (108)
T ss_dssp             HHCTTS-HHHHHHHHHHHHHHHSCSSHHHHHCSHHHHHHHHHTTSTS--HHHHHHHHHHHHHHHH
T ss_pred             eecCcCcHHHHHHHHHHHHHHhcCCCHHHHHhCCHHHHHHHhhccCC--CHHHHHHHHHHHHHhh
Confidence            34445689999999999999999999999999999999999987444  5577778888888886

2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
2ofk_A	183	Crystal Structure Of 3-Methyladenine Dna Glycosylas		5e-37
1lmz_A	187	Solution Structure Of 3-Methyladenine Dna Glycosyla		2e-36
4ai5_A	188	Crystal Structure Of Y16f Of 3-Methyladenine Dna Gl		3e-35
4ai4_A	188	Crystal Structure Of E38q Mutant Of 3-Methyladenine		6e-35
4aia_A	188	The Structural Basis Of 3-Methyladenine Recognition		7e-35
2ofi_A	184	Crystal Structure Of 3-Methyladenine Dna Glycosylas		1e-34
2jg6_A	186	Crystal Structure Of A 3-Methyladenine Dna Glycosyl		3e-34

>pdb|2OFK|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 183

Iteration: 1
 Score =  151 bits (381), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 111/181 (61%), Gaps = 1/181 (0%)
Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC+W++++  +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MQRCDWVSQD-PLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  +A M E+++  +  NT I+    +++ I+ NA+  + +     SF+ F+W +
Sbjct: 60  FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSF 119
Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           V+ +P I +      +P  +P ++A+++ L KRGF+ VG  I YSFMQA GL  DH+  C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGC 179
Query: 300 F 300
           F
Sbjct: 180 F 180

>pdb|1LMZ|A Chain A, Solution Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Length = 187

Iteration: 1
 Score =  149 bits (377), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 110/183 (60%), Gaps = 1/183 (0%)
Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC W++++  +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MERCGWVSQD-PLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W +
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119
Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179
Query: 300 FRY 302
             Y
Sbjct: 180 CCY 182

>pdb|4AI5|A Chain A, Crystal Structure Of Y16f Of 3-Methyladenine Dna Glycosylase I (Tag) In Complex With 3-Methyladenine Length = 188

Iteration: 1
 Score =  145 bits (366), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 72/182 (39%), Positives = 108/182 (59%), Gaps = 1/182 (0%)
Query: 118 GELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFR 177
           G +  C + TK+  VY+ FHD  WG P+YD   LF+LLAL       +W  ILK+KE + 
Sbjct: 1   GAMNECAFGTKD-PVYLNFHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYE 59
Query: 178 EAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMW 237
           EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W
Sbjct: 60  EAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLW 119
Query: 238 GYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLV 297
            YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL 
Sbjct: 120 SYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLK 179
Query: 298 DC 299
           DC
Sbjct: 180 DC 181

>pdb|4AI4|A Chain A, Crystal Structure Of E38q Mutant Of 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 188

Iteration: 1
 Score =  144 bits (363), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 1/182 (0%)
Query: 118 GELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFR 177
           G +  C + TK+  VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + 
Sbjct: 1   GAMNECAFGTKD-PVYLNYHDHVWGQPLYDSKALFKLLALQSQHAGLSWLTILKKKEAYE 59
Query: 178 EAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMW 237
           EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W
Sbjct: 60  EAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLW 119
Query: 238 GYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLV 297
            YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL 
Sbjct: 120 SYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLK 179
Query: 298 DC 299
           DC
Sbjct: 180 DC 181

>pdb|4AIA|A Chain A, The Structural Basis Of 3-Methyladenine Recognition By 3-Methyladenine Dna Glycosylase I (Tag) From Staphylococcus Aureus Length = 188

Iteration: 1
 Score =  144 bits (363), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 71/182 (39%), Positives = 108/182 (59%), Gaps = 1/182 (0%)
Query: 118 GELKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFR 177
           G +  C + TK+  VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + 
Sbjct: 1   GAMNECAFGTKD-PVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYE 59
Query: 178 EAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMW 237
           EAF  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W
Sbjct: 60  EAFYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLW 119
Query: 238 GYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLV 297
            YVN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL 
Sbjct: 120 SYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLK 179
Query: 298 DC 299
           DC
Sbjct: 180 DC 181

>pdb|2OFI|A Chain A, Crystal Structure Of 3-Methyladenine Dna Glycosylase I (Tag) Bound To Dna3MA Length = 184

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 106/180 (58%), Gaps = 1/180 (0%)
Query: 121 KRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAF 180
           +RC+W++++  +Y+A+HD  WGVP  D  +LFE + L G     +W  +LK++E +R  F
Sbjct: 2   QRCDWVSQD-PLYIAYHDNEWGVPETDSRKLFEXICLEGQQAGLSWITVLKKRENYRACF 60
Query: 181 GGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYV 240
             FDP  +A   E+++  +  NT I+    +++ I+ NA+  +       SF+ F+W +V
Sbjct: 61  HQFDPIRIAAXQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAXEQNGESFADFVWSFV 120
Query: 241 NFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDCF 300
           + +P I +      +P  +P ++A+++ L KRGF+ VG  I YSF QA GL  DH+  CF
Sbjct: 121 DGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFXQACGLVNDHITGCF 180

>pdb|2JG6|A Chain A, Crystal Structure Of A 3-Methyladenine Dna Glycosylase I From Staphylococcus Aureus Length = 186

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/180 (38%), Positives = 107/180 (59%), Gaps = 1/180 (0%)
Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           +  C + TK+  VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + EA
Sbjct: 1   MNECAFGTKD-PVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEA 59
Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W Y
Sbjct: 60  FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSY 119
Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL DC
Sbjct: 120 VNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	1e-98
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	1e-97

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Length = 186

 Score =  287 bits (738), Expect = 1e-98
 Identities = 70/186 (37%), Positives = 108/186 (58%), Gaps = 1/186 (0%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           +  C + TK+  VY+ +HD  WG P+YD   LF+LLAL       +W  ILK+KE + EA
Sbjct: 1   MNECAFGTKD-PVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEA 59

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  F+P+ VA+M  ++I  + +   I+    ++  IV+ A+  +KI   +GSFS F+W Y
Sbjct: 60  FYDFEPEKVAQMTAQDIDRLMTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSY 119

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN KP   ++ +  +       A  +S+DL + GF+ +GPV V+SF++AAGL   HL DC
Sbjct: 120 VNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGPVTVFSFLEAAGLYDAHLKDC 179

Query: 300 FRYSEC 305
               + 
Sbjct: 180 PSKPKH 185

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Length = 183

 Score =  285 bits (731), Expect = 1e-97
 Identities = 65/183 (35%), Positives = 111/183 (60%), Gaps = 1/183 (0%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC+W++  + +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MQRCDWVS-QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  +A M E+++  +  NT I+    +++ I+ NA+  + +     SF+ F+W +
Sbjct: 60  FHQFDPIRIAAMQEEDVERLLQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSF 119

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           V+ +P I +      +P  +P ++A+++ L KRGF+ VG  I YSFMQA GL  DH+  C
Sbjct: 120 VDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGTTICYSFMQACGLVNDHITGC 179

Query: 300 FRY 302
           F +
Sbjct: 180 FCH 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
2jg6_A	186	DNA-3-methyladenine glycosidase; 3-methyladenine-D	100.0
2ofk_A	183	3-methyladenine DNA glycosylase I, constitutive; D	100.0
3n0u_A	219	Probable N-glycosylase/DNA lyase; structural genom	97.45
1orn_A	226	Endonuclease III; DNA repair, DNA glycosylase, [4F	96.18
1kea_A	221	Possible G-T mismatches repair enzyme; DNA repair,	96.08
2abk_A	211	Endonuclease III; DNA-repair, DNA glycosylase; 1.8	95.72
3n5n_X	287	A/G-specific adenine DNA glycosylase; alpha-helice	95.65
1kg2_A	225	A/G-specific adenine glycosylase; DNA repair, hydr	95.37
3fhg_A	207	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	94.62
1pu6_A	218	3-methyladenine DNA glycosylase; helix-hairpin-hel	94.21
2yg9_A	225	DNA-3-methyladenine glycosidase II, putative; hydr	94.01
3fsp_A	369	A/G-specific adenine glycosylase; protein-DNA comp	93.7
2h56_A	233	DNA-3-methyladenine glycosidase; 10174367, EC 3.2.	92.62
3s6i_A	228	DNA-3-methyladenine glycosylase 1; DNA glycosylase	92.31
3fhf_A	214	Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel	91.46
4e9f_A	161	Methyl-CPG-binding domain protein 4; HHH DNA glyco	89.44
2jhn_A	295	ALKA, 3-methyladenine DNA-glycosylase; DNA repair,	87.68
3i0w_A	290	8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-	87.21
4b21_A	232	Probable DNA-3-methyladenine glycosylase 2; hydrol	87.03
1v38_A	78	SAM-domain protein samsn-1; structural genomics, h	82.16
2d3d_A	88	VTS1 protein; RNA binding, SAM domain, SRE hairpin	82.09
2b6g_A	119	VTS1P; alpha-helix, pentaloop, hairpin, RNA bindin	80.68

>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A

Probab=100.00  E-value=8.9e-93  Score=633.29  Aligned_cols=184  Identities=38%  Similarity=0.695  Sum_probs=180.4

Q ss_pred             CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174          120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  199 (316)
Q Consensus       120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL  199 (316)
                      |+||+|++ ++|+|++|||+|||+|+|||+.|||+||||||||||||.|||+||++||+||+||||++||+|+|+|||+|
T Consensus         1 m~RC~W~~-~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~L   79 (186)
T 2jg6_A            1 MNECAFGT-KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDRL   79 (186)
T ss_dssp             CTTTTTTC-CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHHH
T ss_pred             CCCCCCCC-CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHHH
Confidence            57999997 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                      |+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+||||
T Consensus        80 l~d~gIIRnr~KI~A~i~NA~~~l~i~~e~gsf~~ylW~fv~~~p~~~~~~~~~~vp~~t~~S~~lsKdLKkrGFkFvGp  159 (186)
T 2jg6_A           80 MTFPNIVHHRKKLEAIVNQAQGYLKIEQAYGSFSKFLWSYVNGKPKDLQYEHASDRITVDDTATQLSKDLKQYGFKFLGP  159 (186)
T ss_dssp             TTCTTSCCCHHHHHHHHHHHHHHHHHHHHHSCHHHHHHGGGTTSCEECCCCSGGGCCSCCHHHHHHHHHHHTTTCCSCCH
T ss_pred             hcCccchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCccCCccchhhcCCCCHHHHHHHHHHHHCCCeeech
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccchh
Q 021174          280 VIVYSFMQAAGLTIDHLVDCFRYSE  304 (316)
Q Consensus       280 tt~ysfMQAvG~vnDHl~~C~r~~~  304 (316)
                      |||||||||+||||||+++|+++.+
T Consensus       160 t~~YafmQA~G~vndH~~~C~~~~~  184 (186)
T 2jg6_A          160 VTVFSFLEAAGLYDAHLKDCPSKPK  184 (186)
T ss_dssp             HHHHHHHHHTTSEECCCTTCTTCCC
T ss_pred             HHHHHHHHHhcccCccccCccccCC
Confidence            9999999999999999999998753

>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*

Probab=100.00  E-value=1e-91  Score=625.29  Aligned_cols=183  Identities=36%  Similarity=0.777  Sum_probs=179.2

Q ss_pred             CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174          120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  199 (316)
Q Consensus       120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL  199 (316)
                      |+||+|++ ++|+|++|||+|||+|++||+.|||+||||||||||||.|||+||++||+||+||||++||+|+|+|||+|
T Consensus         1 ~~RC~W~~-~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~L   79 (183)
T 2ofk_A            1 MQRCDWVS-QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVERL   79 (183)
T ss_dssp             -CCCTTCC-SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHHH
T ss_pred             CCCCCCCC-CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHHH
Confidence            46999997 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                      |+|++|||||+||+|||+|||++++|++|+|||++|||+||+++||+|.+.+..++|++||+|++|||+||||||+||||
T Consensus        80 l~d~~IIRnr~KI~A~i~NA~~~l~i~~e~Gsf~~ylW~fv~~~pi~~~~~~~~~vp~~t~~S~~lsk~LKkrGfkFvGp  159 (183)
T 2ofk_A           80 LQNTGIIRHRGKIQAIISNARAWLAMEQNGESFADFVWSFVDGQPQITQAASLDKIPTSTPASDALAKALKKRGFKFVGT  159 (183)
T ss_dssp             TTCTTSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTTTSCEECCCSSGGGSCSCCHHHHHHHHHHHHTTCCSCCH
T ss_pred             hcCCcchhhHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhcCCCCCccCCccchhhccCCCHHHHHHHHHHHhCCCeecCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccch
Q 021174          280 VIVYSFMQAAGLTIDHLVDCFRYS  303 (316)
Q Consensus       280 tt~ysfMQAvG~vnDHl~~C~r~~  303 (316)
                      |||||||||+||||||+++|+++.
T Consensus       160 T~~yafmQA~G~VndH~~~C~~~~  183 (183)
T 2ofk_A          160 TICYSFMQACGLVNDHITGCFCHP  183 (183)
T ss_dssp             HHHHHHHHHTTSEECCCTTSTTCC
T ss_pred             HHHHHHHHHcCcccCcccCCCCCC
Confidence            999999999999999999999863

>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}

Probab=97.45  E-value=0.00031  Score=63.54  Aligned_cols=106  Identities=15%  Similarity=0.218  Sum_probs=82.4

Q ss_pred             ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcccc-chhhHHHHHHhHHHHHHH
Q 021174          147 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML-AECRVRCIVDNAKCIVKI  225 (316)
Q Consensus       147 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIR-nr~KI~AvI~NAra~l~i  225 (316)
                      .+.-.||.|+..++.+..+|..+.+-.+.+        |+.++.+++++|++++...| +| .+.|.+.++++|+.+   
T Consensus        46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i---  113 (219)
T 3n0u_A           46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL---  113 (219)
T ss_dssp             CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT---
T ss_pred             CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH---
Confidence            567789999999999999999998755555        78999999999999999888 56 789999999999876   


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021174          226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL  291 (316)
Q Consensus       226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~  291 (316)
                          |+|.+..    ++           +       ....-++|.+ .++-|||-|+..||.-.|.
T Consensus       114 ----g~l~~~~----~~-----------~-------~~~~r~~L~~-~l~GVG~kTA~~vL~~~g~  152 (219)
T 3n0u_A          114 ----GKLKNLV----KG-----------D-------PFQSREFLVR-NAKGIGWKEASHFLRNTGV  152 (219)
T ss_dssp             ----TTHHHHH----HS-----------C-------HHHHHHHHHH-HSTTCCHHHHHHHHHTTTC
T ss_pred             ----HHHHHHh----cC-----------C-------cHHHHHHHHH-hCCCCCHHHHHHHHHHcCC
Confidence                4554443    11           0       1123345552 3788999999999987776

>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*

Probab=96.18  E-value=0.054  Score=48.55  Aligned_cols=69  Identities=14%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      .||.|+-+++-.-.+|..+.+-.+.|.++|-  +|+.+|..++++|++++..-|+-|  .|.+.++.=|+.+.
T Consensus        33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fp--t~~~la~a~~~~l~~~i~~~G~~~--~KA~~l~~~a~~i~  101 (226)
T 1orn_A           33 PFELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLYR--NKARNIQKLCAMLI  101 (226)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSHH--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCChH--HHHHHHHHHHHHHH
Confidence            5999999999999999999999999988874  899999999999999998878754  56667777777764

>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2

Probab=96.08  E-value=0.036  Score=49.42  Aligned_cols=101  Identities=17%  Similarity=0.194  Sum_probs=78.6

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  230 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G  230 (316)
                      .||.|+-+++-.-.+|..+.+-...|.+.|  .+|+.||..++++|++++..-|.-  +.|.+.++.=|+.+.+   ++|
T Consensus        35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~~--~~KA~~l~~~a~~i~~---~~~  107 (221)
T 1kea_A           35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGLS--NQRAEQLKELARVVIN---DYG  107 (221)
T ss_dssp             HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHHH---HHT
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHH---HhC
Confidence            799999999999999999999999998887  579999999999999999877764  5677788888887754   222


Q ss_pred             CHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174          231 SFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  289 (316)
Q Consensus       231 SF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv  289 (316)
                      +                      ++|.       .-++|.  .++-|||.|+..+|.-+
T Consensus       108 g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~~  135 (221)
T 1kea_A          108 G----------------------RVPR-------NRKAIL--DLPGVGKYTCAAVMCLA  135 (221)
T ss_dssp             T----------------------SCCS-------CHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred             C----------------------CchH-------HHHHHH--hCCCCcHHHHHHHHHHh
Confidence            1                      1231       113454  37889999988887644

>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1

Probab=95.72  E-value=0.045  Score=48.26  Aligned_cols=71  Identities=11%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHH
Q 021174          150 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK  224 (316)
Q Consensus       150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~  224 (316)
                      -.||.|+-+++-.-.+|..|.+-.+.|.+.|  .+|+.+|..++++|++++..-|.  .+.|.+.+++=|+.+.+
T Consensus        28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~   98 (211)
T 2abk_A           28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE   98 (211)
T ss_dssp             SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence            3799999999999999999988777665544  47999999999999999988787  46777888888887753

>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}

Probab=95.65  E-value=0.13  Score=48.23  Aligned_cols=71  Identities=13%  Similarity=0.185  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          148 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       148 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      .+-.||.|+-+++-.-.+|.+|.+-...|.+.|-  +++.+|..++++|++++.--|.-  + |.+.+++=|+.+.
T Consensus        46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~  116 (287)
T 3n5n_X           46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVV  116 (287)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHH
Confidence            4678999999999999999999999999988875  89999999999999999988886  3 7788888888774

>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A

Probab=95.37  E-value=0.19  Score=44.70  Aligned_cols=100  Identities=15%  Similarity=0.173  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhc
Q 021174          150 QLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEF  229 (316)
Q Consensus       150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~  229 (316)
                      -.||.|+-+++-.-.+|..+.+-...|.+.|  .+|+.+|..++++|++++.--|.-  + |.+.++.=|+.+.+   ++
T Consensus        29 ~pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~--~-kA~~l~~~a~~i~~---~~  100 (225)
T 1kg2_A           29 TPYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAAQQVAT---LH  100 (225)
T ss_dssp             CHHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHHHHHHH---HS
T ss_pred             CHHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH--H-HHHHHHHHHHHHHH---Hh
Confidence            3699999999999999999998777777766  379999999999999999888876  2 78888888887753   32


Q ss_pred             CCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021174          230 GSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  288 (316)
Q Consensus       230 GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQA  288 (316)
                      |+                      ++|.       .-++|.  .++-|||.|+..+|.-
T Consensus       101 ~g----------------------~~p~-------~~~~L~--~lpGIG~~TA~~il~~  128 (225)
T 1kg2_A          101 GG----------------------KFPE-------TFEEVA--ALPGVGRSTAGAILSL  128 (225)
T ss_dssp             TT----------------------SCCC-------SHHHHH--TSTTCCHHHHHHHHHH
T ss_pred             CC----------------------CchH-------HHHHHh--cCCCCcHHHHHHHHHH
Confidence            21                      1232       123454  3788999998888764

>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}

Probab=94.62  E-value=0.11  Score=45.75  Aligned_cols=112  Identities=12%  Similarity=0.147  Sum_probs=81.8

Q ss_pred             cChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHH
Q 021174          146 YDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI  225 (316)
Q Consensus       146 ~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i  225 (316)
                      ...+-.||.|+-++.-.-.+|..+.+-.+.+        ++.++..++++|++++..-|+=-.+.|.+.+.+-|+++.+.
T Consensus        28 ~~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~~~   99 (207)
T 3fhg_A           28 SNEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVYGR   99 (207)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHTTT
T ss_pred             CCcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHH
Confidence            3567899999999999999999999888877        58899999999999877655434678988888888866431


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhcc
Q 021174          226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGL  291 (316)
Q Consensus       226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~  291 (316)
                        -.|++..|- +-                   .|  +..-++|.  .++-|||-|+-.+|..+|.
T Consensus       100 --~~~~l~~~~-~~-------------------~~--~~~~~~L~--~lpGIG~kTA~~il~~~~~  139 (207)
T 3fhg_A          100 --LKEEIKPLA-DE-------------------DQ--QLARERLL--NIKGIGMQEASHFLRNVGY  139 (207)
T ss_dssp             --HHHHHHHHH-HH-------------------CH--HHHHHHHT--TSTTCCHHHHHHHHHHTTC
T ss_pred             --hhhhHHHHh-CC-------------------CH--HHHHHHHH--cCCCcCHHHHHHHHHHhCC
Confidence              112333331 10                   01  13445565  5899999999999987676

>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*

Probab=94.21  E-value=0.33  Score=43.20  Aligned_cols=107  Identities=20%  Similarity=0.224  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhhccccHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHH
Q 021174          151 LFELLALSGMLMDYNWTEILKRKELFREA-FGGFD----PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKI  225 (316)
Q Consensus       151 LFE~L~LEgfQAGLSW~tILkKRe~fr~A-F~~FD----~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i  225 (316)
                      -||.|+-.+.-.-.+|..+.+-...+.++ |-..+    |+.++..++++|++++..-|.-  +.|.+.++.=|+++.  
T Consensus        30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G~~--~~KA~~L~~~a~~i~--  105 (218)
T 1pu6_A           30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGFY--NQKAKRLIDLSGNIL--  105 (218)
T ss_dssp             SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSCH--HHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCCCc--HHHHHHHHHHHHHHH--
Confidence            58999999999999999999888888776 54322    9999999999999998877754  567777777777763  


Q ss_pred             HHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh
Q 021174          226 LNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA  289 (316)
Q Consensus       226 ~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv  289 (316)
                       +++|+|..+-                  +|       ..-+.|.  .++-|||-|+..+|.-+
T Consensus       106 -~~~~~l~~~~------------------~~-------~~~~~L~--~lpGIG~kTA~~il~~a  141 (218)
T 1pu6_A          106 -KDFQSFENFK------------------QE-------VTREWLL--DQKGIGKESADAILCYA  141 (218)
T ss_dssp             -HHHSSHHHHH------------------HH-------CCHHHHH--TSTTCCHHHHHHHHHHT
T ss_pred             -HhcCChhhcc------------------ch-------HHHHHHH--cCCCcCHHHHHHHHHHH
Confidence             4567765320                  01       1122344  47888888888887643

>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A

Probab=94.01  E-value=0.22  Score=44.66  Aligned_cols=130  Identities=16%  Similarity=0.141  Sum_probs=89.6

Q ss_pred             CChhhhhhhhcCCCc-cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCcccc
Q 021174          129 NNKVYVAFHDECWGV-PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIML  207 (316)
Q Consensus       129 ~~~ly~~YHD~EWG~-Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIR  207 (316)
                      .+|.+..-.+..-|. +.....-.||.|+-.+.-.-.||..+.+-...|.+.|...+|+.|+..+++++..      +=-
T Consensus        38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~------~G~  111 (225)
T 2yg9_A           38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRG------VGL  111 (225)
T ss_dssp             TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHH------TTC
T ss_pred             cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHH------CCC
Confidence            356665544443343 3333345799999999999999999999999998888888999999999998832      223


Q ss_pred             chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021174          208 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ  287 (316)
Q Consensus       208 nr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ  287 (316)
                      .+.|.+.++.=|+++.+   ...+|+.                 ....|     .+.+-+.|.  .++-|||-|+-.+|.
T Consensus       112 ~~~KA~~i~~lA~~~~~---g~~~l~~-----------------l~~~~-----~~e~~~~L~--~l~GIG~~TA~~ill  164 (225)
T 2yg9_A          112 SWAKVRTVQAAAAAAVS---GQIDFAH-----------------LSGQP-----DELVIAELV--QLPGIGRWTAEMFLL  164 (225)
T ss_dssp             CHHHHHHHHHHHHHHHT---TSSCGGG-----------------CTTSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh---CCcCHHH-----------------HhcCC-----HHHHHHHHH--cCCCCCHHHHHHHHH
Confidence            46788889888888753   1112221                 11122     234455666  489999999988876


Q ss_pred             Hh-cc
Q 021174          288 AA-GL  291 (316)
Q Consensus       288 Av-G~  291 (316)
                      -+ |.
T Consensus       165 ~~lg~  169 (225)
T 2yg9_A          165 FALAR  169 (225)
T ss_dssp             HTSCC
T ss_pred             HhCCC
Confidence            53 53

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*

Probab=93.70  E-value=0.59  Score=44.23  Aligned_cols=72  Identities=19%  Similarity=0.233  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHH
Q 021174          148 DNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK  224 (316)
Q Consensus       148 Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~  224 (316)
                      .+--||.|+-+++-.-.+|.+|.+-...|.+.|  .+|+.+|..++++|++++.--|.-  + |.+.++.=|+.+.+
T Consensus        36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~  107 (369)
T 3fsp_A           36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT  107 (369)
T ss_dssp             CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence            344689999999999999999999888888887  589999999999999999888874  4 78888888888754

>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}

Probab=92.62  E-value=0.22  Score=44.74  Aligned_cols=129  Identities=12%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             ChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhhCCCcccc
Q 021174          130 NKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGF--DPKSVAKMGEKEILEISSNTAIML  207 (316)
Q Consensus       130 ~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~F--D~~~VA~~~e~dIerLm~d~~IIR  207 (316)
                      +|.+..-.+..-|.+.....-.||.|+-.+.-.-.||..+.+-...|.+.|..+  +|+.|+..++++|..      +=-
T Consensus        30 d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G~  103 (233)
T 2h56_A           30 DSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AGV  103 (233)
T ss_dssp             CHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TTC
T ss_pred             CHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cCC
Confidence            455544433333433333334799999999999999999999999999999877  999999999998822      223


Q ss_pred             chhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH
Q 021174          208 AECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ  287 (316)
Q Consensus       208 nr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ  287 (316)
                      .++|.+.++.=|+++.+   .+.++....                 .+|     .+..-++|.  .++-|||-|+-.+|.
T Consensus       104 ~~~KA~~I~~~A~~i~~---~~~~~~~l~-----------------~~p-----~~~~~~~L~--~lpGIG~kTA~~ill  156 (233)
T 2h56_A          104 SKRKIEYIRHVCEHVES---GRLDFTELE-----------------GAE-----ATTVIEKLT--AIKGIGQWTAEMFMM  156 (233)
T ss_dssp             CHHHHHHHHHHHHHHHT---TSSCHHHHT-----------------TSC-----HHHHHHHHH--TSTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHh---CCCCHHHHh-----------------cCC-----HHHHHHHHH--hCCCcCHHHHHHHHH
Confidence            56788889888888743   222333211                 112     123445665  488999999988876


Q ss_pred             H-hcc
Q 021174          288 A-AGL  291 (316)
Q Consensus       288 A-vG~  291 (316)
                      - .|.
T Consensus       157 ~alg~  161 (233)
T 2h56_A          157 FSLGR  161 (233)
T ss_dssp             HTTCC
T ss_pred             HhCCC
Confidence            4 454

>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}

Probab=92.31  E-value=0.78  Score=41.15  Aligned_cols=129  Identities=11%  Similarity=0.083  Sum_probs=89.1

Q ss_pred             CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHhhccccHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhhC
Q 021174          129 NNKVYVAFHDECWGVPVY--DDN-QLFELLALSGMLMDYNWTEILKRKELFREAF---GGF-DPKSVAKMGEKEILEISS  201 (316)
Q Consensus       129 ~~~ly~~YHD~EWG~Pv~--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF---~~F-D~~~VA~~~e~dIerLm~  201 (316)
                      .||.+..-.+..-|..+.  ..+ -.||.|+-.+.-.-.||..+.+-...| +.|   ..| +|+.|+..++++|.    
T Consensus        25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr----   99 (228)
T 3s6i_A           25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMR----   99 (228)
T ss_dssp             SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHH----
T ss_pred             hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHH----
Confidence            356665555554444332  122 479999999999999999999999999 888   345 99999999999873    


Q ss_pred             CCccccchhhHHHHHHhHHHHHHHHHhcCCHH--HhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          202 NTAIMLAECRVRCIVDNAKCIVKILNEFGSFS--SFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       202 d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~--~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                        .+=-.++|.+.++.=|+++.+     |.+.  +.+-.                .+     -+.+-+.|.  .++-|||
T Consensus       100 --~~G~~~rKa~~i~~~A~~~~~-----g~~p~~~~l~~----------------~~-----~~e~~~~L~--~l~GIG~  149 (228)
T 3s6i_A          100 --ACGFSARKIDSLKSIAEATIS-----GLIPTKEEAER----------------LS-----NEELIERLT--QIKGIGR  149 (228)
T ss_dssp             --HHTCCHHHHHHHHHHHHHHHH-----TSSCCHHHHTT----------------SC-----HHHHHHHHT--TSTTCCH
T ss_pred             --HcCCCHHHHHHHHHHHHHHHc-----CCCCChHHHhc----------------CC-----HHHHHHHHH--hCCCcCH
Confidence              233467789999988888752     4331  11111                11     134556665  4899999


Q ss_pred             hhHHHHHH-Hhccc
Q 021174          280 VIVYSFMQ-AAGLT  292 (316)
Q Consensus       280 tt~ysfMQ-AvG~v  292 (316)
                      -|+-.+|. +.|..
T Consensus       150 ~TA~~ill~~lg~p  163 (228)
T 3s6i_A          150 WTVEMLLIFSLNRD  163 (228)
T ss_dssp             HHHHHHHHHTSCCS
T ss_pred             HHHHHHHHHhCCCC
Confidence            99988775 56653

>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*

Probab=91.46  E-value=0.73  Score=41.35  Aligned_cols=116  Identities=13%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             ChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHH
Q 021174          147 DDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKIL  226 (316)
Q Consensus       147 DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~  226 (316)
                      +.+-.||.|+..+.-+--+|..+.+--+.+.        +.++..++++|++++..-|.=-.+.|-+-+++-|+ +    
T Consensus        40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L~--------~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~-~----  106 (214)
T 3fhf_A           40 SNEEWFKELCFCILTANFTAEGGIRIQKEIG--------DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR-F----  106 (214)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHHHT--------THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG-G----
T ss_pred             CCCChHHHHHHHHHcCCCCHHHHHHHHHHHH--------HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH-h----
Confidence            5678999999999999999999998777774        56899999999999876662113345444444444 2    


Q ss_pred             HhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhccccccc-cccc
Q 021174          227 NEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHL-VDCF  300 (316)
Q Consensus       227 ~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG~vnDHl-~~C~  300 (316)
                         |.+-+.+-++             .++|       ..-++|.+ .++-|||-|+..+|.-+|. ++-- +|-+
T Consensus       107 ---~~l~~~~~~~-------------~~~~-------~~re~Ll~-~LpGVG~KTA~~vL~~~g~-~~~~vVDth  156 (214)
T 3fhf_A          107 ---KNIKDIVESF-------------ENEK-------VAREFLVR-NIKGIGYKEASHFLRNVGY-DDVAIIDRH  156 (214)
T ss_dssp             ---CCHHHHHHHS-------------SSHH-------HHHHHHHH-HSTTCCHHHHHHHHHHTTC-CSCCCCCHH
T ss_pred             ---hHHHHHhccc-------------CCcH-------HHHHHHHH-hCCCCCHHHHHHHHHHcCC-CCcccCcHH
Confidence               2222222111             0111       22234441 3788999999999987776 4433 4433

>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A

Probab=89.44  E-value=0.57  Score=40.30  Aligned_cols=57  Identities=11%  Similarity=0.058  Sum_probs=50.5

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchh
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAEC  210 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~  210 (316)
                      |+.|+-+++-+=-+|.+|.+--+.|.+.|-  +|+.+|..++++|+++..--|.-++|+
T Consensus        32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~KA   88 (161)
T 4e9f_A           32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDLRA   88 (161)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHHHH
T ss_pred             HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHHHH
Confidence            899999999999999999987777777765  899999999999999999888876653

>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A

Probab=87.68  E-value=2.1  Score=39.45  Aligned_cols=123  Identities=18%  Similarity=0.231  Sum_probs=83.5

Q ss_pred             ChhhhhhhhcCCCccccC--hHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHH
Q 021174          130 NKVYVAFHDECWGVPVYD--DNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKE  195 (316)
Q Consensus       130 ~~ly~~YHD~EWG~Pv~D--Dr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~-----------F-D~~~VA~~~e~d  195 (316)
                      +|.+..-.+..-|.++.-  ..-.||.|+-.+.-.-.||..+.+-...+.+.|..           | +|+.||..++++
T Consensus        95 D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~~  174 (295)
T 2jhn_A           95 DEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVEG  174 (295)
T ss_dssp             SHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHHH
Confidence            455544444444554443  44579999999999999999999999999999864           5 799999998888


Q ss_pred             HHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCc
Q 021174          196 ILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFR  275 (316)
Q Consensus       196 IerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFk  275 (316)
                      +..+    |  -.++|.+.++.=|++        |+|...                 ..+|    . +.+-+.|.  .++
T Consensus       175 Lr~~----G--~~~rKa~~i~~~A~~--------g~l~~l-----------------~~~~----~-~e~~~~L~--~lp  216 (295)
T 2jhn_A          175 LREC----G--LSRRKAELIVEIAKE--------ENLEEL-----------------KEWG----E-EEAYEYLT--SFK  216 (295)
T ss_dssp             HHHT----T--CCHHHHHHHHHHHTC--------SSGGGG-----------------GGSC----H-HHHHHHHH--TST
T ss_pred             HHHc----C--CCHHHHHHHHHHHHC--------CCHhhh-----------------hcCC----H-HHHHHHHh--cCC
Confidence            7321    2  356666666665554        444321                 0112    1 34555666  489


Q ss_pred             ccChhhHHHHHH-Hhc
Q 021174          276 LVGPVIVYSFMQ-AAG  290 (316)
Q Consensus       276 FVGPtt~ysfMQ-AvG  290 (316)
                      -|||-|+-.+|. +.|
T Consensus       217 GIG~~TA~~ill~~lg  232 (295)
T 2jhn_A          217 GIGRWTAELVLSIALG  232 (295)
T ss_dssp             TCCHHHHHHHHHHTTC
T ss_pred             CcCHHHHHHHHHHccC
Confidence            999999987766 456

>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A

Probab=87.21  E-value=2.8  Score=38.72  Aligned_cols=128  Identities=17%  Similarity=0.136  Sum_probs=88.8

Q ss_pred             ChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHHH
Q 021174          130 NKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG-----------F-DPKSVAKMGEKEIL  197 (316)
Q Consensus       130 ~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~-----------F-D~~~VA~~~e~dIe  197 (316)
                      +|.+..-.+.--|..+.. .-.||.|+-.+.-.-.||..+.+-...+.++|..           | +|+.||..+++++.
T Consensus        95 Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L~  173 (290)
T 3i0w_A           95 DPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDFE  173 (290)
T ss_dssp             SHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHHH
Confidence            455554444556666654 5589999999999999999999999999999764           5 99999999999998


Q ss_pred             HhhCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCccc
Q 021174          198 EISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLV  277 (316)
Q Consensus       198 rLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFV  277 (316)
                      ++    ++=   .|.+.++.=|+++.+   .+.++.... ..                +     -...-+.|.  .++-|
T Consensus       174 ~~----g~g---~Ra~~I~~~A~~i~~---g~~~l~~l~-~~----------------~-----~~~~~~~L~--~lpGI  219 (290)
T 3i0w_A          174 EC----TAG---FRAKYLKDTVDRIYN---GELNLEYIK-SL----------------N-----DNECHEELK--KFMGV  219 (290)
T ss_dssp             HT----TCG---GGHHHHHHHHHHHHT---TSSCHHHHH-HS----------------C-----HHHHHHHHT--TSTTC
T ss_pred             Hc----CCc---hHHHHHHHHHHHHHh---CCCCHHHHh-cC----------------C-----HHHHHHHHH--hCCCc
Confidence            83    332   278888888887742   233443221 10                0     123445554  58889


Q ss_pred             ChhhHHHHH-HHhccc
Q 021174          278 GPVIVYSFM-QAAGLT  292 (316)
Q Consensus       278 GPtt~ysfM-QAvG~v  292 (316)
                      ||-|+-.+| .+.|..
T Consensus       220 G~~TA~~ill~~lg~p  235 (290)
T 3i0w_A          220 GPQVADCIMLFSMQKY  235 (290)
T ss_dssp             CHHHHHHHHHHHHCCT
T ss_pred             CHHHHHHHHHHhCCCC
Confidence            998887665 446653

>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*

Probab=87.03  E-value=2  Score=38.75  Aligned_cols=130  Identities=12%  Similarity=0.071  Sum_probs=86.9

Q ss_pred             ChhhhhhhhcCCCc--cccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhhCCC
Q 021174          130 NKVYVAFHDECWGV--PVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGG---F-DPKSVAKMGEKEILEISSNT  203 (316)
Q Consensus       130 ~~ly~~YHD~EWG~--Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~---F-D~~~VA~~~e~dIerLm~d~  203 (316)
                      ||.+..-.+..-|.  |....+-.||.|+-.+.-.-.||..+.+-...|.++|..   | +|+.||..++++|..    -
T Consensus        37 Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~----~  112 (232)
T 4b21_A           37 DNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE----C  112 (232)
T ss_dssp             CHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----T
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----c
Confidence            45444444443342  222223469999999999999999999999999999975   5 999999999998743    3


Q ss_pred             ccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHH
Q 021174          204 AIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVY  283 (316)
Q Consensus       204 ~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~y  283 (316)
                      |+  .++|.+.++.=|+++.+  .+.+++.. +...                |     .+.+-++|.+  ++=|||-|+-
T Consensus       113 Gl--~~~Ka~~l~~~A~~~~~--g~~p~l~~-l~~~----------------~-----~~~~~~~L~~--l~GIG~~TA~  164 (232)
T 4b21_A          113 GF--SKLKSQEIHIVAEAALN--KQIPSKSE-IEKM----------------S-----EEELMESLSK--IKGVKRWTIE  164 (232)
T ss_dssp             TC--CHHHHHHHHHHHHHHHT--TCSCCHHH-HHHS----------------C-----HHHHHHHHTT--STTCCHHHHH
T ss_pred             CC--cHHHHHHHHHHHHHHHh--CCCCCHHH-HHcC----------------C-----HHHHHHHHHh--CCCcCHHHHH
Confidence            44  56888888888888753  01112222 1111                1     1234456654  8899999998


Q ss_pred             HHHHH-hcc
Q 021174          284 SFMQA-AGL  291 (316)
Q Consensus       284 sfMQA-vG~  291 (316)
                      .+|.- .|-
T Consensus       165 ~ill~alg~  173 (232)
T 4b21_A          165 MYSIFTLGR  173 (232)
T ss_dssp             HHHHHTSCC
T ss_pred             HHHHHhCCC
Confidence            77654 453

>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2

Probab=82.16  E-value=1.3  Score=33.54  Aligned_cols=43  Identities=9%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             HHHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174          174 ELFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN  218 (316)
Q Consensus       174 e~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N  218 (316)
                      +.|...|  .||| .+.|+.++++|+.+|=-..  .-||+||.+.|..
T Consensus        25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~   70 (78)
T 1v38_A           25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES   70 (78)
T ss_dssp             GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence            5677777  7995 9999999999999874322  4699999876654

>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A

Probab=82.09  E-value=2.3  Score=33.71  Aligned_cols=47  Identities=6%  Similarity=-0.019  Sum_probs=38.7

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174          174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI  222 (316)
Q Consensus       174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~  222 (316)
                      .-|.+.|.+.+.+.+..|+|+|++++=-.  ..-+|+||..+|+.-|..
T Consensus        31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~   77 (88)
T 2d3d_A           31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY   77 (88)
T ss_dssp             GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence            45888899999999999999999997543  367999999988865554

>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}

Probab=80.68  E-value=3.2  Score=34.62  Aligned_cols=54  Identities=9%  Similarity=0.088  Sum_probs=42.6

Q ss_pred             HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174          166 WTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI  222 (316)
Q Consensus       166 W~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~  222 (316)
                      |..-|+ -.-|.+.|.+-+.+.+..++|+|++.+=-.  -.-+|+||...|.--+..
T Consensus        55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~  108 (119)
T 2b6g_A           55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY  108 (119)
T ss_dssp             HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhh
Confidence            554433 367899999999999999999999997543  378999999888755554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1nkua_	187	a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (T	2e-76

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Length = 187

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

 Score =  229 bits (586), Expect = 2e-76
 Identities = 65/183 (35%), Positives = 110/183 (60%), Gaps = 1/183 (0%)

Query: 120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREA 179
           ++RC W++++  +Y+A+HD  WGVP  D  +LFE++ L G     +W  +LK++E +R  
Sbjct: 1   MERCGWVSQD-PLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59

Query: 180 FGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGY 239
           F  FDP  VA M E+++  +  +  I+    +++ I+ NA+  +++      F+ F+W +
Sbjct: 60  FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSF 119

Query: 240 VNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAGLTIDHLVDC 299
           VN +P + +      +P  +P ++A+S+ L KRGF+ VG  I YSFMQA GL  DH+V C
Sbjct: 120 VNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGTTICYSFMQACGLVNDHVVGC 179

Query: 300 FRY 302
             Y
Sbjct: 180 CCY 182

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1nkua_	187	3-Methyladenine DNA glycosylase I (Tag) {Escherich	100.0
d1pu6a_	217	3-Methyladenine DNA glycosylase III (MagIII) {Heli	95.14
d1keaa_	217	Thymine-DNA glycosylase {Archaeon Methanobacterium	94.68
d1rrqa1	221	Catalytic domain of MutY {Bacillus stearothermophi	94.16
d1orna_	214	Endonuclease III {Escherichia coli [TaxId: 562]}	93.52
d1kg2a_	224	Catalytic domain of MutY {Escherichia coli [TaxId:	91.75
d1ngna_	144	Mismatch-specific thymine glycosylase domain of th	91.04
d2abka_	211	Endonuclease III {Escherichia coli [TaxId: 562]}	86.79
d2noha1	190	8-oxoguanine glycosylase {Human (Homo sapiens) [Ta	85.75
d1oxja1	62	RNA-binding protein Smaug {Drosophila melanogaster	85.22
d1dxsa_	57	C-terminal domain of p73 {Human (Homo sapiens) [Ta	84.06

>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase I (Tag)
domain: 3-Methyladenine DNA glycosylase I (Tag)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-89  Score=607.92  Aligned_cols=184  Identities=35%  Similarity=0.788  Sum_probs=181.4

Q ss_pred             CccccCCccCChhhhhhhhcCCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHh
Q 021174          120 LKRCNWITKNNKVYVAFHDECWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEI  199 (316)
Q Consensus       120 ~~RC~Wa~~~~~ly~~YHD~EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerL  199 (316)
                      |+||+|++ ++|+|++|||+|||+|++||+.|||+||||+|||||||.|||+||++||+||+||||++||+|+|+|||+|
T Consensus         1 ~~RC~W~~-~~~~~~~YHD~eWG~p~~dD~~LFE~L~Le~fQaGLsW~~IL~Kr~~fr~aF~~Fd~~~vA~~~e~~ie~L   79 (187)
T d1nkua_           1 MERCGWVS-QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPVKVAAMQEEDVERL   79 (187)
T ss_dssp             CCCCSSCC-SCHHHHHHHHHSSSSCCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHTCCHHHHHHH
T ss_pred             CCCCCCCC-CChHHHHHHhccCCCcCCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCCCHHHHHcCCHHHHHHH
Confidence            68999997 57999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCccccchhhHHHHHHhHHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccCh
Q 021174          200 SSNTAIMLAECRVRCIVDNAKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGP  279 (316)
Q Consensus       200 m~d~~IIRnr~KI~AvI~NAra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGP  279 (316)
                      |+|++|||||+||+|||+|||++++|++++|||++|||+||+++|++|.+.+..+||++|++|++|||+|||+||+||||
T Consensus        80 l~d~~IIRNr~KI~Avi~NAr~~l~i~~e~gsf~~~lw~f~~~~p~~~~~~~~~~ip~~t~~s~~lsk~LKk~GfkFvGp  159 (187)
T d1nkua_          80 VQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVWSFVNHQPQMTQATTLSEIPTSTPASDALSKALKKRGFKFVGT  159 (187)
T ss_dssp             HTCCSSCCCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTTCCEECCCSSGGGSCSCCHHHHHHHHHHHHHTCCCCCH
T ss_pred             hccCCeeechHHHHHHHHHHHHHHHHHHhcCCHHHHHHhcCCCCCcCCCccCHHHhhcCCHHHHHHHHHHHhcCCeecCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhccccccccccccchh
Q 021174          280 VIVYSFMQAAGLTIDHLVDCFRYSE  304 (316)
Q Consensus       280 tt~ysfMQAvG~vnDHl~~C~r~~~  304 (316)
                      |||||||||+||||||+++||||..
T Consensus       160 t~~ysfmqa~G~vndH~~~C~~~~~  184 (187)
T d1nkua_         160 TICYSFMQACGLVNDHVVGCCCYPG  184 (187)
T ss_dssp             HHHHHHHHHHTSEECCCSSSSSCCS
T ss_pred             HHHHHHHHHcCCcCcccCCCCCCCC
Confidence            9999999999999999999999976

>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: 3-Methyladenine DNA glycosylase III (MagIII)
domain: 3-Methyladenine DNA glycosylase III (MagIII)
species: Helicobacter pylori [TaxId: 210]

Probab=95.14  E-value=0.068  Score=45.69  Aligned_cols=109  Identities=19%  Similarity=0.219  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhhccccHHHHHHhHHHHHHHhcC-----CCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHH
Q 021174          150 QLFELLALSGMLMDYNWTEILKRKELFREAFGG-----FDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVK  224 (316)
Q Consensus       150 ~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~-----FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~  224 (316)
                      --||.|+-++..--.||..+.+--..++.+|..     .+|+.||..++++|++++..-|.  .+.|.+.++.=|+.+. 
T Consensus        28 ~pfe~lv~aIL~Qqts~~~a~~a~~~L~~~~~~~~~~~~t~~~la~a~~eel~~~ir~~G~--~~~KA~~i~~~a~~i~-  104 (217)
T d1pu6a_          28 LKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSGF--YNQKAKRLIDLSGNIL-  104 (217)
T ss_dssp             TSHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHH-
T ss_pred             CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccccCCCHHHHHCCCHHHHHHHHHHCCC--cHHHHHHHHHHHHHHH-
Confidence            349999999999999999998766666666643     37999999999999999998886  6677777877777764 


Q ss_pred             HHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHhc
Q 021174          225 ILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAAG  290 (316)
Q Consensus       225 i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAvG  290 (316)
                        ++++++.+.        +.          |       ..-++|.  .++-|||-|+..+|.-++
T Consensus       105 --~~~~~~~~~--------~~----------~-------~~~~~L~--~lpGIG~kTA~~vl~~~~  141 (217)
T d1pu6a_         105 --KDFQSFENF--------KQ----------E-------VTREWLL--DQKGIGKESADAILCYAC  141 (217)
T ss_dssp             --HHHSSHHHH--------HH----------H-------CCHHHHH--TSTTCCHHHHHHHHHHTT
T ss_pred             --HhhhhcccC--------Cc----------H-------HHHHHHH--HHhhhhhHHHHHHHHHHc
Confidence              355444211        00          1       1223565  478899999988887654

>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Thymine-DNA glycosylase
species: Archaeon Methanobacterium thermoformicicum [TaxId: 145262]

Probab=94.68  E-value=0.15  Score=43.23  Aligned_cols=108  Identities=18%  Similarity=0.241  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCC
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  231 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GS  231 (316)
                      |+.|+-+++-.--+|.+|.+-.+.|.+.|-  +++.+|..++++|+.+..--|.  .+.|-..++.=|+.+.   +++|+
T Consensus        34 ~~vLv~~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~i~---~~~~g  106 (217)
T d1keaa_          34 YVILITEILLRRTTAGHVKKIYDKFFVKYK--CFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVI---NDYGG  106 (217)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHCC--SHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHH---HHHTT
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHhcc--cHHHHHHhhHHHHHHHHHHHHh--hhHHHHHHHHHHHHHH---hhccC
Confidence            899999999999999999999999999886  8999999999999999985544  4455556666666653   45543


Q ss_pred             HHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHHh-----cccccccc
Q 021174          232 FSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQAA-----GLTIDHLV  297 (316)
Q Consensus       232 F~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQAv-----G~vnDHl~  297 (316)
                                            .+|..       -++|.+  ..-|||-|+.+.|.-+     ++|++|..
T Consensus       107 ----------------------~~p~~-------~~~L~~--LpGVG~kTA~~il~~~~~~~~~~vD~~v~  146 (217)
T d1keaa_         107 ----------------------RVPRN-------RKAILD--LPGVGKYTCAAVMCLAFGKKAAMVDANFV  146 (217)
T ss_dssp             ----------------------SCCSC-------HHHHHT--STTCCHHHHHHHHHHTTCCCCCCCCHHHH
T ss_pred             ----------------------Ccchh-------hHHHHH--HHhhhhhhhHHHHHHhcCCcccccccchh
Confidence                                  12321       134554  7888998888877542     34555543

>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.16  E-value=0.28  Score=41.51  Aligned_cols=70  Identities=19%  Similarity=0.216  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHH
Q 021174          149 NQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIV  223 (316)
Q Consensus       149 r~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l  223 (316)
                      +--||.|+-+++-.--+|.+|.+-.+.|.+.|-  +++.+|..++++|+++..--|.-+   |-..++..|+.++
T Consensus        26 ~dp~~vLV~~iLsqqT~~~~v~~~~~~L~~~~~--t~~~la~a~~~~l~~~i~~~G~~~---ra~~l~~~~~~~~   95 (221)
T d1rrqa1          26 RDPYKVWVSEVMLQQTRVETVIPYFEQFIDRFP--TLEALADADEDEVLKAWEGLGYYS---RVRNLHAAVKEVK   95 (221)
T ss_dssp             CCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHHTTSSCTH---HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcc--hHHHHHhhcHHHHHhhhccchhhh---hhHHHHHHHHHHh
Confidence            344899999999999999999999999999985  799999999999999999877753   4455666666653

>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.51  Score=39.63  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=59.5

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcC
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFG  230 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~G  230 (316)
                      |+.|+-+++-.==.|.+|.+-.+.|.+.|-  +++.+|..++++++.+..--|.-  +.|-+.++..|+.+.   +++|
T Consensus        31 ~~vLVs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~~~~~e~~~~i~~~g~y--~~ka~~l~~~a~~i~---~~~~  102 (214)
T d1orna_          31 FELLIAVVLSAQCTDALVNKVTKRLFEKYR--TPHDYIAVPLEELEQDIRSIGLY--RNKARNIQKLCAMLI---DKYN  102 (214)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHCC--SHHHHHSSCHHHHHHHTGGGSSH--HHHHHHHHHHHHHHH---HHST
T ss_pred             HHHHHHHHHHhcChHHHHHHHHhhhhcccC--chhhhhhccHHHhhhhhhhhhhh--hHHHHHHHHHhhhHH---HHhC
Confidence            899999999999999999999999999886  57999999999999999876664  445556777777663   4555

>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Catalytic domain of MutY
species: Escherichia coli [TaxId: 562]

Probab=91.75  E-value=0.99  Score=37.97  Aligned_cols=110  Identities=15%  Similarity=0.164  Sum_probs=78.7

Q ss_pred             CCCccccChHHHHHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhH
Q 021174          140 CWGVPVYDDNQLFELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNA  219 (316)
Q Consensus       140 EWG~Pv~DDr~LFE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NA  219 (316)
                      ....|=...+--|+.|+-+++-+==.|.+|.+--+.|.+.|.  +++.+|..++++|+.+..--|.-  + |-.-++..|
T Consensus        19 ~~~lPWr~~~~p~~vlvs~iLsqqT~~~~v~~~~~~l~~~~p--t~~~la~a~~~~l~~~i~~~g~~--~-ka~~l~~~~   93 (224)
T d1kg2a_          19 RKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFP--TVTDLANAPLDEVLHLWTGLGYY--A-RARNLHKAA   93 (224)
T ss_dssp             CCCSGGGSSCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHCS--SHHHHHHSCHHHHHHHHTTSCCT--H-HHHHHHHHH
T ss_pred             CCCCCCCCCCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHhc--cHHHHHHhhHHHHHhHhhhhhHH--H-HHHHHHHhh
Confidence            444443333345899999999999999999999999999987  89999999999999999988864  2 225566666


Q ss_pred             HHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHHH
Q 021174          220 KCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQA  288 (316)
Q Consensus       220 ra~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQA  288 (316)
                      +.+.   +++|+                      ++|..-       ++|.+  ..-|||-|+.+.|.-
T Consensus        94 ~~i~---~~~~g----------------------~vp~~~-------~~L~~--LpGVG~kTA~~il~~  128 (224)
T d1kg2a_          94 QQVA---TLHGG----------------------KFPETF-------EEVAA--LPGVGRSTAGAILSL  128 (224)
T ss_dssp             HHHH---HHSTT----------------------SCCCSH-------HHHHT--STTCCHHHHHHHHHH
T ss_pred             hhhh---hhccC----------------------CcchHH-------HHHHH--HHhhhhhhhHHHHHH
Confidence            6653   34433                      123211       24544  678999998887753

>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Mismatch glycosylase
domain: Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.04  E-value=0.39  Score=38.28  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=56.1

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHH
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCI  222 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~  222 (316)
                      |+.|+-+++-.=-+|..+.+-.+.|.+.|-  +|+.+|+.++++|++++..-|.-+  .|-+.+++-|+.+
T Consensus        21 f~~LV~~ILsqqT~~~~v~~v~~~L~~~~p--t~e~la~a~~~el~~~Ir~~G~~~--~KAk~I~~~a~~~   87 (144)
T d1ngna_          21 WKLLIATIFLNRTSGKMAIPVLWEFLEKYP--SAEVARAADWRDVSELLKPLGLYD--LRAKTIIKFSDEY   87 (144)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHSC--SHHHHHHSCHHHHHHHTGGGSCHH--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHhCC--chhhhhccCHHHHHHHHHhhhhHH--HHHHHHHHHHhhH
Confidence            788999999999999999988888877765  899999999999999999888854  4555666667665

>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=86.79  E-value=0.24  Score=41.87  Aligned_cols=73  Identities=12%  Similarity=0.187  Sum_probs=61.1

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhHHHHHHHHHhcCC
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNAKCIVKILNEFGS  231 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NAra~l~i~~e~GS  231 (316)
                      ||.|+-+++-.=-+|.+|.+-.+.|.+.|  .+++.+|..++++|+++..--|.  .+.|-+.+..-|+.+   .+++|+
T Consensus        30 ~~vli~~iLsqqT~~~~v~~~~~~l~~~~--~t~~~la~a~~~~l~~~i~~~G~--y~~Ka~~l~~~a~~i---~~~~~g  102 (211)
T d2abka_          30 FELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRIL---LEQHNG  102 (211)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHH---HHHTTT
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhc--cChHHHHhhhHhHhHHHHHHhhh--hhhHHHHHHHHHHHH---HHHhcC
Confidence            89999999999999999999999998887  58899999999999999997666  556667777777776   356554

>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.75  E-value=5.2  Score=32.24  Aligned_cols=110  Identities=20%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             HHHHHHHHhhccccHHHHHHhHHHHHHHhcCC-------------CHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHh
Q 021174          152 FELLALSGMLMDYNWTEILKRKELFREAFGGF-------------DPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDN  218 (316)
Q Consensus       152 FE~L~LEgfQAGLSW~tILkKRe~fr~AF~~F-------------D~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~N  218 (316)
                      ||.|+-.+.-...|+..+-+-...+.+.|..+             +|+.++..+++++-+....    .  .|-+.++.=
T Consensus         3 fe~lv~~IisQq~s~~~~~~~~~~L~~~~G~~~~~~~~~~~~~FP~~~~la~~~~e~~l~~~~~----~--~ra~~i~~~   76 (190)
T d2noha1           3 IECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAHLRKLGL----G--YRARYVSAS   76 (190)
T ss_dssp             HHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHHSTTHHHHHHHTTC----T--THHHHHHHH
T ss_pred             HHHHHHHHHHcccCHHHHHHHHHHHHHHHCCCccccCcchhhccCCHHHHHHcchHHHHHhcch----H--HHHHHHHHH
Confidence            89999999999999999999999999999543             7999999998887665442    1  255677777


Q ss_pred             HHHHHHHHHhcCCHHHhccccCCCccccCCCCCCCCCCCCCHHHHHHHHHHHHcCCcccChhhHHHHHH-Hhcc
Q 021174          219 AKCIVKILNEFGSFSSFMWGYVNFKPMINKFRYPRNVPLRSPKAEAISRDLLKRGFRLVGPVIVYSFMQ-AAGL  291 (316)
Q Consensus       219 Ara~l~i~~e~GSF~~ylWsfv~~kpi~n~~~~~~~vP~~t~~S~~lsKdLKkrGFkFVGPtt~ysfMQ-AvG~  291 (316)
                      |+.+.   +.+++....-. .             .+.|     ...+-+.|.+  ++=|||-|+..+|. +.|-
T Consensus        77 a~~i~---~~~~~~~~l~~-l-------------~~~~-----~~~~~~~L~~--l~GIG~wTA~~il~~~~~~  126 (190)
T d2noha1          77 ARAIL---EEQGGLAWLQQ-L-------------RESS-----YEEAHKALCI--LPGVGTQVADCICLMALDK  126 (190)
T ss_dssp             HHHHH---HTSCSHHHHHH-T-------------TTSC-----HHHHHHHHTT--STTCCHHHHHHHHHHHSCC
T ss_pred             HHHHH---HhcccccCHHH-h-------------cCCC-----cHHHHHHHHH--cCCchHHHHHHHHHHHcCC
Confidence            77774   34443321110 0             0111     1234456644  89999999998755 4454

>d1oxja1 a.60.1.2 (A:594-655) RNA-binding protein Smaug {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: RNA-binding protein Smaug
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.22  E-value=0.23  Score=34.73  Aligned_cols=43  Identities=12%  Similarity=0.154  Sum_probs=36.3

Q ss_pred             HHHHHHhcCCCHHHHhcCCHHHHHHhhCCCccccchhhHHHHHHhH
Q 021174          174 ELFREAFGGFDPKSVAKMGEKEILEISSNTAIMLAECRVRCIVDNA  219 (316)
Q Consensus       174 e~fr~AF~~FD~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~NA  219 (316)
                      +.|...|.+.+++.+..++|+|++.|=-.+   =||.||...|+.-
T Consensus        18 ~~Y~~~F~~~~~d~l~~lt~~dL~~lGI~~---GhRkkil~~I~~L   60 (62)
T d1oxja1          18 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKL   60 (62)
T ss_dssp             GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHhCCHHHHHHcCCCH---HHHHHHHHHHHHh
Confidence            578889999999999999999999877653   4899998887653

>d1dxsa_ a.60.1.2 (A:) C-terminal domain of p73 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: SAM/Pointed domain
family: SAM (sterile alpha motif) domain
domain: C-terminal domain of p73
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.06  E-value=0.68  Score=31.61  Aligned_cols=40  Identities=8%  Similarity=0.024  Sum_probs=32.0

Q ss_pred             HHHHHh--cCCC-HHHHhcCCHHHHHHhhCCCccccchhhHHHHHH
Q 021174          175 LFREAF--GGFD-PKSVAKMGEKEILEISSNTAIMLAECRVRCIVD  217 (316)
Q Consensus       175 ~fr~AF--~~FD-~~~VA~~~e~dIerLm~d~~IIRnr~KI~AvI~  217 (316)
                      .|.+.|  .||| ++.|+.++++|+.++=-+.   .||+||-..|.
T Consensus        13 ~Y~~~F~~~G~~~l~~l~~lt~eDL~~lGI~~---~hr~kilk~i~   55 (57)
T d1dxsa_          13 NCIEYFTSQGLQSIYHLQNLTIEDLGALKIPE---QYRMTIWRGLQ   55 (57)
T ss_dssp             TSHHHHHTTTCCCHHHHHTCCHHHHHHTTCCT---TTHHHHHHHHH
T ss_pred             HHHHHHHHccCCcHHHHHHhhHHHHHHcCCCH---HHHHHHHHHHH
Confidence            455555  4786 9999999999999988853   69999987664