Citrus Sinensis ID: 021188

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MHTMRAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Secondary Structure (PSIPRED)
cccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHcccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHcccccccccccHHccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHHHcccHHHHcccccccccccHHHHHcccccHHHHcccccccccHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccHHHHHHHcc
Coil and Loop (DISEMBL)
MHTMRAARAagtkrecnsseedqqelrrgpwtleeDTLLTHYIHQHGEGRWNMVAKCAglkrtgksCRLRWLNylkpdikrgnltpQEQFLILELHSKWGnrwskiaqclpgrtdneikNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKmeqnsaspntlltnssaqssnfsiipsvssstlsplpstilynsnqtinensssetspnffpgdfskisqlqqpgitqqptsphaygnnvcsnqivpndsyyvdccgfdmegysltdpiaemssydissseCQMAEADWMSNDMSDALWSMDDIWQLRE
Flexible Loop (DISEMBL)
mhtmraaraagtkrecnsseedqqelrrgpwTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYlkpdikrgnlTPQEQFLILELHSKWGNRWSKIAqclpgrtdneikNYWRTRVQKQArqlniesnseTFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Low Complexity Region (SEG)
MHTMRAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQssnfsiipsvssstlsplpstilYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Disordered region (IsUnstruct)
******************************WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLL***************************************************************************************YGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEM****************W******DALWSMDDIW****
Disordered Region (DISOPRED)
*****************************PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK******************************************************************************************************************YGNNVCSNQIVPNDSYYVDCCGFDMEGYS****************ECQMAEADWMSNDMSDALWSMDDIWQLRE
Disordered Region (DISEMBL)
***************************RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTI*********PNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Disordered Region (DISPRO)
**************ECNSSE**QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWM**********************************SSSTLSPLPST*****************************SQLQQPGITQQPTSPHAYGNNVCSNQ**PNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHTMRAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSMDDIWQLRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
P81391	205	Myb-related protein 305 O	N/A	no	0.398	0.614	0.676	7e-49
Q9LK95	226	Transcription factor MYB2	no	no	0.370	0.517	0.675	6e-48
P81396	198	Myb-related protein 340 O	N/A	no	0.370	0.590	0.685	7e-47
Q4JL84	235	Transcription factor MYB5	no	no	0.348	0.468	0.663	7e-42
Q9LX82	256	Transcription factor MYB4	no	no	0.335	0.414	0.660	1e-40
P81394	268	Myb-related protein 315 O	N/A	no	0.607	0.716	0.426	4e-37
Q4JL76	242	Myb-related protein MYBAS	no	no	0.348	0.454	0.609	7e-37
Q53NK6	237	Myb-related protein MYBAS	no	no	0.348	0.464	0.590	2e-36
Q9SEI0	203	Transcription factor WER	no	no	0.370	0.576	0.555	2e-35
A2WW87	553	Transcription factor GAMY	N/A	no	0.335	0.191	0.575	4e-35

>sp|P81391|MYB05_ANTMA Myb-related protein 305 OS=Antirrhinum majus GN=MYB305 PE=2 SV=1

 Score =  194 bits (493), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 88/130 (67%), Positives = 109/130 (83%), Gaps = 4/130 (3%)

Query: 13  KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
           K+ CNS +    E+R+GPWT+EED +L +YI  HGEG WN +A+ AGLKRTGKSCRLRWL
Sbjct: 3   KKPCNSQD---VEVRKGPWTMEEDLILINYIANHGEGVWNSLARSAGLKRTGKSCRLRWL 59

Query: 73  NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           NYL+PD++RGN+TP+EQ LI+ELH+KWGNRWSKIA+ LPGRTDNEIKNYWRTR+QK   Q
Sbjct: 60  NYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKTLPGRTDNEIKNYWRTRIQKHMEQ 119

Query: 133 LNIESNSETF 142
            + +S+S TF
Sbjct: 120 GD-QSSSTTF 128

Transcription factor.
Antirrhinum majus (taxid: 4151)

>sp|Q9LK95|MYB21_ARATH Transcription factor MYB21 OS=Arabidopsis thaliana GN=MYB21 PE=1 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 79/117 (67%), Positives = 102/117 (87%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           + E+R+GPWT+EED +L +YI  HG+G WN +AK AGLKRTGKSCRLRWLNYL+PD++RG
Sbjct: 17  EAEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSCRLRWLNYLRPDVRRG 76

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 139
           N+TP+EQ +I+ELH+KWGNRWSKIA+ LPGRTDNEIKN+WRTR+QK  +Q ++ + S
Sbjct: 77  NITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKYIKQSDVTTTS 133

Transcription factor involved in photomorphogenesis in the light. May act downstream of the light receptor network and directly affects transcription of light-induced genes. In darkness, its probable degradation prevent the activation of light-induced genes. Required to activate expression of PAL.

Arabidopsis thaliana (taxid: 3702)

>sp|P81396|MYB40_ANTMA Myb-related protein 340 OS=Antirrhinum majus GN=MYB340 PE=2 SV=1

 Score =  187 bits (476), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 83/121 (68%), Positives = 103/121 (85%), Gaps = 4/121 (3%)

Query: 13  KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
           K+ CNS +    E+R+GPWT+EED +L ++I  HGEG WN +A+ AGLKRTGKSCRLRWL
Sbjct: 3   KKPCNSHD---VEVRKGPWTMEEDLILINFISNHGEGVWNTIARSAGLKRTGKSCRLRWL 59

Query: 73  NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYW-RTRVQKQAR 131
           NYL+PD++RGN+TP+EQ LI+ELH+KWGNRWSKIA+ LPGRTDNEIKNYW RTR+QK  +
Sbjct: 60  NYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWNRTRIQKHIK 119

Query: 132 Q 132
           Q
Sbjct: 120 Q 120

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q4JL84|MYB59_ARATH Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 73/110 (66%), Positives = 94/110 (85%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           Q+E R+GPWT +ED LL +++H  G+ RW+ VAK +GL RTGKSCRLRW+NYL P +KRG
Sbjct: 5   QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
            +TPQE+ L+LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct: 65  KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LX82|MYB48_ARATH Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1

 Score =  166 bits (421), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 70/106 (66%), Positives = 91/106 (85%)

Query: 27  RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTP 86
           R+GPWT +ED LL +++H  G+ RW+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP
Sbjct: 8   RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTP 67

Query: 87  QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           QE+ L+LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct: 68  QEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113

Transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|P81394|MYB15_ANTMA Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1

 Score =  155 bits (392), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 5/197 (2%)

Query: 26  LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLT 85
           L+RGPWT EED  LT Y+ ++G   W ++ K AGL R GKSCRLRW+NYL+PD+K+G LT
Sbjct: 12  LKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLT 71

Query: 86  PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEA 145
             E+  I+ELH+  GNRWSKIA  +PGRTDNEIKNYW T ++K+ + L I+ N+   FE 
Sbjct: 72  EMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKLKLLGIDPNNHQPFEH 131

Query: 146 VRCYWMPRLLQKM-EQNSASPNTLLTNSSAQSSNFSII----PSVSSSTLSPLPSTILYN 200
                  ++     E NS     ++   S Q +N  I     P +    ++   S  L +
Sbjct: 132 KGNVDETKIESDTKESNSQDMKQIVNEVSRQGNNDQITESTSPEIKDEIVTSCQSDYLMH 191

Query: 201 SNQTINENSSSETSPNF 217
           +N  ++  SS+  SP+F
Sbjct: 192 NNDLMSNRSSNYYSPSF 208

Transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q4JL76|MYBA2_ORYSJ Myb-related protein MYBAS2 OS=Oryza sativa subsp. japonica GN=MYBAS2 PE=2 SV=1

 Score =  154 bits (390), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 67/110 (60%), Positives = 90/110 (81%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           ++E+R+GPWT +ED  L   +   GE RW+ +AK +GL RTGKSCRLRW+NYL P +KRG
Sbjct: 5   REEIRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
            ++P E+ LILELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct: 65  RMSPHEERLILELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53NK6|MYBA1_ORYSJ Myb-related protein MYBAS1 OS=Oryza sativa subsp. japonica GN=MYBAS1 PE=2 SV=1

 Score =  153 bits (386), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 65/110 (59%), Positives = 90/110 (81%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           ++E+R+GPWT +ED  L   +   G+ RW+ VAK +GL RTGKSCRLRW+NYL P +K G
Sbjct: 5   REEMRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKHG 64

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
            ++P+E+ LI+ELH++WGNRWS+IA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct: 65  RMSPKEEHLIIELHARWGNRWSRIARRLPGRTDNEIKNYWRTHMRKKAQE 114

Transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SEI0|WER_ARATH Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1

 Score =  150 bits (378), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 86/117 (73%)

Query: 13  KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
           K+  +S +E   E ++G WT+EED +L  Y+  HG+G WN +AK  GLKR GKSCRLRW+
Sbjct: 3   KKVSSSGDEGNNEYKKGLWTVEEDKILMDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWM 62

Query: 73  NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           NYL P++KRGN T QE+ LI+ LH   GNRWS IA+ +PGRTDN++KNYW T + K+
Sbjct: 63  NYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119

Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC.

Arabidopsis thaliana (taxid: 3702)

>sp|A2WW87|GAM1_ORYSI Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 82/106 (77%)

Query: 26  LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLT 85
           L++GPWT  ED +L  Y+ +HGEG WN V K  GL R GKSCRLRW N+L+P++K+G  T
Sbjct: 40  LKKGPWTSAEDAILVDYVKKHGEGNWNAVQKNTGLFRCGKSCRLRWANHLRPNLKKGAFT 99

Query: 86  PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
            +E+ LI++LHSK GN+W+++A  LPGRTDNEIKNYW TR+++  R
Sbjct: 100 AEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145

Transcriptional activator of gibberellin-dependent alpha-amylase expression in aleurone cells. Involved in pollen and floral organs development. May bind to the 5'-TAACAAA-3' box of alpha-amylase promoter.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
224111664	319	predicted protein [Populus trichocarpa]	0.968	0.959	0.559	3e-89
224099383	314	predicted protein [Populus trichocarpa]	0.946	0.952	0.574	4e-88
295883130	299	putative MYB transcription factor [Rosa	0.908	0.959	0.584	5e-85
357444727	311	R2R3-MYB transcription factor [Medicago	0.946	0.961	0.535	2e-84
359491453	328	PREDICTED: transcription factor MYB75-li	0.924	0.890	0.534	2e-82
297737800	295	unnamed protein product [Vitis vinifera]	0.901	0.966	0.584	2e-81
225424019	288	PREDICTED: myb-related protein 340 [Viti	0.901	0.989	0.584	2e-81
227437136	303	MYB protein [Malus hybrid cultivar]	0.892	0.930	0.542	3e-81
71041084	298	MYB7 [Malus x domestica]	0.873	0.926	0.555	5e-81
356534359	308	PREDICTED: transcription factor MYB21-li	0.908	0.931	0.559	2e-80

>gi|224111664|ref|XP_002315935.1| predicted protein [Populus trichocarpa] gi|222864975|gb|EEF02106.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (856), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 179/320 (55%), Positives = 223/320 (69%), Gaps = 14/320 (4%)

Query: 4   MRAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRT 63
           MRA+    T+R CNS EE + ELRRGPWTLEEDTLLT YI ++ EGRWNM+AKCAGLKRT
Sbjct: 1   MRASMLGVTRRICNSREE-EGELRRGPWTLEEDTLLTRYIARNREGRWNMLAKCAGLKRT 59

Query: 64  GKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWR 123
           GKSCRLRWLNYLKPD+KRGNLTPQEQ LILELHSK GNRWSKIAQ LPGRTDNEIKNYWR
Sbjct: 60  GKSCRLRWLNYLKPDVKRGNLTPQEQLLILELHSKLGNRWSKIAQHLPGRTDNEIKNYWR 119

Query: 124 TRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQS------- 176
           T+VQK+ARQLNIE++S  F +AVR +WMPRL QKMEQ S S ++   +S +Q+       
Sbjct: 120 TKVQKEARQLNIEASSTKFLDAVRSFWMPRLPQKMEQASYSSSSTTLDSQSQADHGVRSP 179

Query: 177 SNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQ 236
           S+ S +PS  S+ L P  S + + SN   +ENSS  TSP+    +   IS   QP I + 
Sbjct: 180 SSNSTVPSSLSTLLCPPESKLAHYSNLG-SENSSPVTSPHVLSANSDTIS--PQPEILEN 236

Query: 237 PTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADW 296
           PT    +G+   +N I+ +  Y    C +D++G++     A M +YD S  ECQMA  +W
Sbjct: 237 PTCSPLHGDTFYNNLILSDTCYEEGSC-YDLDGFNQAS--AGMGTYDNSPLECQMAGGNW 293

Query: 297 MSNDMSDALWSMDDIWQLRE 316
           + +   D +W MDD+WQ R+
Sbjct: 294 VFDSRVDTIWDMDDMWQFRD 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099383|ref|XP_002311464.1| predicted protein [Populus trichocarpa] gi|222851284|gb|EEE88831.1| predicted protein [Populus trichocarpa]

 Score =  330 bits (847), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 177/308 (57%), Positives = 222/308 (72%), Gaps = 9/308 (2%)

Query: 13  KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
           KR CN  EE + ELRRGPWTLEEDTLLTHYI +HGEGRWNM+A+ AGLKRTGKSCRLRWL
Sbjct: 6   KRICNPREE-ESELRRGPWTLEEDTLLTHYITRHGEGRWNMLARGAGLKRTGKSCRLRWL 64

Query: 73  NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           NYLKPDIKRGNLTPQEQ LILELHSKWGNRWSKIAQ LPGRTDNEIKNYWRT+VQK+ARQ
Sbjct: 65  NYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTKVQKEARQ 124

Query: 133 LNIESNSETFFEAVRCYWMPRLLQKMEQN--SASPNTLLTNSSAQSSNFSIIPSV--SSS 188
           LNIE+NS+ F +AVR YWMPRL+QK+EQ   S+S  TL + +  +  + S  P V  SS 
Sbjct: 125 LNIEANSKRFLDAVRSYWMPRLIQKIEQASYSSSLTTLDSPADREVRSTSSNPPVHNSSP 184

Query: 189 TLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVC 248
           TL   P +   + +   +ENS S TSP     + + ISQ Q   I + P+     G+ VC
Sbjct: 185 TLLCPPESRFTHCSNPGSENSFSFTSPYLLSTNSNTISQ-QPDEILENPSCSPLLGDTVC 243

Query: 249 SNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWSM 308
           +N I+ +D+Y  +   +DM+ +++    A M ++D S  ECQ+AE +W+ + + D LW+M
Sbjct: 244 NNLIL-SDTYNKEGSSYDMDVFNVAS--AGMGTHDNSPLECQVAEGNWVFDSVEDTLWNM 300

Query: 309 DDIWQLRE 316
           DD+W  R+
Sbjct: 301 DDMWVFRD 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295883130|gb|ADG56766.1| putative MYB transcription factor [Rosa rugosa]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 180/308 (58%), Positives = 218/308 (70%), Gaps = 21/308 (6%)

Query: 9   AAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCR 68
           A     E  S  E++ E+R+GPWTL+EDTLL HYI  HGEG WN +AKCAGLKRTGKSCR
Sbjct: 2   AGVADSEYTSPNEEENEMRKGPWTLDEDTLLIHYIANHGEGHWNALAKCAGLKRTGKSCR 61

Query: 69  LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128
           LRWLNYLKPDIKRGNLTPQEQ LILELH+KWGNRWSKIAQ LPGRTDNEIKNYWRTRVQK
Sbjct: 62  LRWLNYLKPDIKRGNLTPQEQLLILELHAKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQK 121

Query: 129 QARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQ----SSNFSIIPS 184
           QARQLNIESNS+ F +AVRC+WMP L QKMEQ S+      ++SS+     +S  SI PS
Sbjct: 122 QARQLNIESNSKRFLDAVRCFWMPTLRQKMEQTSSLSLDPPSSSSSHSNYLTSQISIAPS 181

Query: 185 VSSSTLS-PLPSTILYNSNQTINENSSSETSPNFFPGDF--SKISQLQQPGITQQPTSPH 241
           +S+S  +  +PS+        +++ S   TS          S ISQL  P IT+QP S  
Sbjct: 182 LSTSPQTCSVPSSPPSKVVSHVSDYSPIGTSSPSHNSLSSDSLISQL--PQITEQPAS-S 238

Query: 242 AYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWM-SND 300
           +Y           ND+YYVD   +DMEG+SL DP++EM+++D S  +CQMAE+DW+ SN 
Sbjct: 239 SYAFEAL------NDNYYVD---YDMEGFSL-DPVSEMATFDTSQFDCQMAESDWIPSNY 288

Query: 301 MSDALWSM 308
           M+D LW+M
Sbjct: 289 MTDTLWNM 296

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357444727|ref|XP_003592641.1| R2R3-MYB transcription factor [Medicago truncatula] gi|355481689|gb|AES62892.1| R2R3-MYB transcription factor [Medicago truncatula]

 Score =  318 bits (815), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/323 (53%), Positives = 224/323 (69%), Gaps = 24/323 (7%)

Query: 1   MHTMRA-ARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG 59
           M+T R  A +  TK+E  +S+E + ELRRGPWTLEED+LL HYI +HGEGRWNM+AK AG
Sbjct: 1   MNTTRTLAMSTTTKKEFGNSKE-ENELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAG 59

Query: 60  LKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIK 119
           LKRTGKSCRLRWLNYLKPDIKRGNLTPQEQ LILELHSKWGNRWSKIAQ LPGRTDNEIK
Sbjct: 60  LKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIK 119

Query: 120 NYWRTRVQKQARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSA----------SPNTLL 169
           NYWRTRVQKQARQLNIES S+ F +AV+C+WMPRLLQKMEQN++          + N   
Sbjct: 120 NYWRTRVQKQARQLNIESGSKRFIDAVKCFWMPRLLQKMEQNTSPSFDNSSSMTNMNNFG 179

Query: 170 TNSSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQ 229
            +  A +SN   IPS+S S+  P    I  ++   ++  S+S  +P+    DF + SQ  
Sbjct: 180 NSIEASTSNSFNIPSMSPSSY-PQRGFIDASNGNHLSTMSTSFNNPSL---DFFQFSQ-- 233

Query: 230 QPGITQQPTSPHAYGNNVCSNQIVPNDSYYV-DCCGFDMEGYSLTDPIAEMSSYDISSSE 288
              +    ++P+ + NN  +  I   D++ + D   + +EG +L DP++ M +YD S  +
Sbjct: 234 --PLENSKSAPNVFENNFYNGPI--QDNFCIDDTNNYGLEGLNL-DPMSSMETYDFSQFD 288

Query: 289 CQMAEADWMSNDMSDALWSMDDI 311
            Q  E+ WM ++M++ LW+MD +
Sbjct: 289 LQTTESGWMLDNMANTLWNMDSM 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491453|ref|XP_002276526.2| PREDICTED: transcription factor MYB75-like [Vitis vinifera] gi|297734217|emb|CBI15464.3| unnamed protein product [Vitis vinifera]

 Score =  311 bits (798), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 164/307 (53%), Positives = 204/307 (66%), Gaps = 15/307 (4%)

Query: 21  EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK 80
           E+  ELRRGPWTLEEDTLL HYI  HGEGRWN++AKC+GL+RTGKSCRLRWLNYLKPD+K
Sbjct: 13  EEDAELRRGPWTLEEDTLLIHYIASHGEGRWNLLAKCSGLRRTGKSCRLRWLNYLKPDVK 72

Query: 81  RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSE 140
           RGNLTPQEQ LILELHSKWGNRWSKIAQ LPGRTDNEIKNYWRTRVQKQAR L I+SNS 
Sbjct: 73  RGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARHLKIDSNSR 132

Query: 141 TFFEAVRCYWMPRLLQKME----------QNSASPNTLLTNSSAQSSNFSIIPSVSSSTL 190
            F + +RC WMPRLLQK+E          Q S  P +L    S Q S  +  P V+ + +
Sbjct: 133 AFQDVIRCVWMPRLLQKIEGSSSTSSTTSQVSIIPQSLNHADSQQHSAAAPPPVVAQAPV 192

Query: 191 -SPLPSTILYNSNQTINENSSSE--TSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNV 247
             PL      N+ +   +NSSSE  TSP+    +   ISQ+ Q  I   PTSP    +N 
Sbjct: 193 QGPLSINETINNLEHNEKNSSSENCTSPSICSSESMNISQISQ--IPDYPTSPFQAMSNS 250

Query: 248 CSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDMSDALWS 307
                +    Y VD   ++ME ++L    A    ++    +C M E++W+ +D++D+LW+
Sbjct: 251 DDYSTLLKGYYNVDNSNYEMETFNLASMSAPQGDFENPVGDCPMVESNWVDSDLADSLWN 310

Query: 308 MDDIWQL 314
           MD++WQ 
Sbjct: 311 MDELWQF 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737800|emb|CBI27001.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/306 (58%), Positives = 215/306 (70%), Gaps = 21/306 (6%)

Query: 9   AAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCR 68
           A   KR  NSSEE   ELRRGPWTLEEDTLL HYI  HGEGRWN++AKCAGLKRTGKSCR
Sbjct: 2   ATVAKRINNSSEE--IELRRGPWTLEEDTLLIHYIACHGEGRWNLLAKCAGLKRTGKSCR 59

Query: 69  LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128
           LRWLNYLKPDIKRGNLTPQEQ LILELHSKWGNRWS+IAQ LPGRTDNEIKNYWRTRVQK
Sbjct: 60  LRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSRIAQHLPGRTDNEIKNYWRTRVQK 119

Query: 129 QARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSS 188
           QARQL IES+S+ F +AVR +WMPRLLQKMEQ S S +T     +  ++N + + S SS+
Sbjct: 120 QARQLKIESDSKRFIDAVRRFWMPRLLQKMEQASTS-STAADTVTTNTTNTTTVNSQSST 178

Query: 189 TLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSP-HAYGNNV 247
             + LP+ I  +S+   +  +S   S +    D  KI  L  P I++ PTSP  A GN V
Sbjct: 179 IPALLPNQITVSSSPPQSSVTSPSISTS----DSMKIPLL--PEISEHPTSPSQAIGNTV 232

Query: 248 CSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDIS-SSECQMAEADWMSNDMSDALW 306
            +N ++ ND  YVD   +DME  +   P + + +YD S  S+ QMAE DW+       LW
Sbjct: 233 HNNPVI-NDCSYVDSSVYDMEPLA---PSSAIGTYDFSLFSDYQMAENDWID------LW 282

Query: 307 SMDDIW 312
           ++D +W
Sbjct: 283 NVDKLW 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424019|ref|XP_002279433.1| PREDICTED: myb-related protein 340 [Vitis vinifera]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 179/306 (58%), Positives = 215/306 (70%), Gaps = 21/306 (6%)

Query: 9   AAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCR 68
           A   KR  NSSEE   ELRRGPWTLEEDTLL HYI  HGEGRWN++AKCAGLKRTGKSCR
Sbjct: 2   ATVAKRINNSSEE--IELRRGPWTLEEDTLLIHYIACHGEGRWNLLAKCAGLKRTGKSCR 59

Query: 69  LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128
           LRWLNYLKPDIKRGNLTPQEQ LILELHSKWGNRWS+IAQ LPGRTDNEIKNYWRTRVQK
Sbjct: 60  LRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSRIAQHLPGRTDNEIKNYWRTRVQK 119

Query: 129 QARQLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQSSNFSIIPSVSSS 188
           QARQL IES+S+ F +AVR +WMPRLLQKMEQ S S +T     +  ++N + + S SS+
Sbjct: 120 QARQLKIESDSKRFIDAVRRFWMPRLLQKMEQASTS-STAADTVTTNTTNTTTVNSQSST 178

Query: 189 TLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSP-HAYGNNV 247
             + LP+ I  +S+   +  +S   S +    D  KI  L  P I++ PTSP  A GN V
Sbjct: 179 IPALLPNQITVSSSPPQSSVTSPSISTS----DSMKIPLL--PEISEHPTSPSQAIGNTV 232

Query: 248 CSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDIS-SSECQMAEADWMSNDMSDALW 306
            +N ++ ND  YVD   +DME  +   P + + +YD S  S+ QMAE DW+       LW
Sbjct: 233 HNNPVI-NDCSYVDSSVYDMEPLA---PSSAIGTYDFSLFSDYQMAENDWID------LW 282

Query: 307 SMDDIW 312
           ++D +W
Sbjct: 283 NVDKLW 288

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227437136|gb|ACP30364.1| MYB protein [Malus hybrid cultivar]

 Score =  308 bits (788), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 174/321 (54%), Positives = 208/321 (64%), Gaps = 39/321 (12%)

Query: 5   RAARAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTG 64
           RAA AA T  E N       E RRGPWTLEED LL HYI  HGEG WN +AK AGLKRTG
Sbjct: 4   RAAMAAPTTPEEN-------EFRRGPWTLEEDNLLIHYIVNHGEGHWNSLAKLAGLKRTG 56

Query: 65  KSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124
           KSCRLRWLNYLKPDIKRGNLTPQEQ +ILELHSKWGNRWSKIAQ LPGRT+NEIKNYWRT
Sbjct: 57  KSCRLRWLNYLKPDIKRGNLTPQEQLMILELHSKWGNRWSKIAQHLPGRTNNEIKNYWRT 116

Query: 125 RVQKQARQLNIESNSETFFEAVRCYWMPRLLQKME-------------QNSASPNTLLTN 171
           RVQKQARQLNIESNSE F +AVR +W+P LLQKME             QNSASP  L  N
Sbjct: 117 RVQKQARQLNIESNSEQFLDAVRGFWVPTLLQKMEQSSSSCSSTLSTSQNSASP-CLSPN 175

Query: 172 SSAQSSNFSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSP-NFFPGD--FSKISQL 228
            +A S   S  P  +++ +           N  I+ NS+  T P N    D   S + Q+
Sbjct: 176 HAALSVPLSTSPPSNATNVL---------DNYHISGNSNLATVPSNILSADSFVSHVPQM 226

Query: 229 QQPGITQQPTSPHAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSE 288
            +P  +  P    AY   +  + + P+ S+YVD   +D+EG SL DP++ M +   S  +
Sbjct: 227 AEPSTSFPP----AY-YRLGYSSLSPDGSHYVDSSSYDVEGLSL-DPVSAMGNLGNSQFD 280

Query: 289 CQMAEADWMSNDMSDALWSMD 309
           CQM   DWM ++++D+LW+MD
Sbjct: 281 CQMGGNDWMLDNVTDSLWNMD 301

Source: Malus hybrid cultivar

Species: Malus hybrid cultivar

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|71041084|gb|AAZ20430.1| MYB7 [Malus x domestica]

 Score =  307 bits (786), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 171/308 (55%), Positives = 206/308 (66%), Gaps = 32/308 (10%)

Query: 18  SSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP 77
           ++  ++ E RRGPWTLEED LL HYI  HGEG WN VAK AGLKRTGKSCRLRWLNYLKP
Sbjct: 5   TTPNEENEFRRGPWTLEEDNLLIHYIVNHGEGHWNSVAKLAGLKRTGKSCRLRWLNYLKP 64

Query: 78  DIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIES 137
           DIKRGNLTPQEQ +ILELHSKWGNRWSKIAQ LPGRT NEIKNYWRTRVQKQARQLNIES
Sbjct: 65  DIKRGNLTPQEQLMILELHSKWGNRWSKIAQHLPGRTGNEIKNYWRTRVQKQARQLNIES 124

Query: 138 NSETFFEAVRCYWMPRLLQKME-------------QNSASPNTLLTNSSAQSSNFSIIPS 184
           NSE F +AVR +W+P LLQKME             QNSASP  L  N +A        PS
Sbjct: 125 NSEQFLDAVRGFWVPTLLQKMEQSSSSCSSTLSTSQNSASP-CLSPNHAA--------PS 175

Query: 185 VSSSTLSPLPSTILYNSNQTINENSSSETSP-NFFPGD--FSKISQLQQPGITQQPTSPH 241
           V  ST  P  +T + + N  I+ NS+  T P N    D   S + Q+ +P  +  P    
Sbjct: 176 VPLSTSPPSNATNVLD-NYHISGNSNLATVPSNILSADSFVSHVPQMAEPSTSFPP---- 230

Query: 242 AYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWMSNDM 301
           AY   +  + + P+ S+YVD   +D+EG SL DP++ M +   S  +CQM   DWM +++
Sbjct: 231 AY-YRLGYSSLSPDGSHYVDSSSYDVEGLSL-DPVSPMGNLGNSQFDCQMGGNDWMLDNV 288

Query: 302 SDALWSMD 309
           +D+LW+MD
Sbjct: 289 TDSLWNMD 296

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534359|ref|XP_003535723.1| PREDICTED: transcription factor MYB21-like [Glycine max]

 Score =  305 bits (780), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 175/313 (55%), Positives = 222/313 (70%), Gaps = 26/313 (8%)

Query: 12  TKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRW 71
            KR+ +S+EE + ELRRGPWTLEED+LL HYI +HGEGRWNM+AK AGLKRTGKSCRLRW
Sbjct: 5   AKRDLSSNEE-ESELRRGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRW 63

Query: 72  LNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
           LNYLKPDIKRGNLTPQEQ LILELHSKWGNRWSKIAQ LPGRTDNEIKNYWRTR+QKQAR
Sbjct: 64  LNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQAR 123

Query: 132 QLNIESNSETFFEAVRCYWMPRLLQKMEQNSAS-------PNTLLTNSSAQS------SN 178
           QLNIES S+ F +AV+C+WMPRLLQKMEQ+++         N +   +S ++      S+
Sbjct: 124 QLNIESGSKRFIDAVKCFWMPRLLQKMEQSNSPSPHHSSMTNMMNLGNSGEASMSSMSSS 183

Query: 179 FSIIPSVSSSTLSPLPSTILYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPT 238
           F+I PS+SSS+  P    I+ ++N     ++    SP+ F     + SQL +  I++ P 
Sbjct: 184 FNINPSMSSSSSPPQREFIMDDANHFNTMSNPINPSPDSF-----QFSQLLE--ISEHPK 236

Query: 239 SP-HAYGNNVCSNQIVPNDSYYVDCCGFDMEGYSLTDPIAEMSSYDISSSECQMAEADWM 297
           SP + + NNVCS  I   D+ YVD   + MEG ++ DP++ M +YD    + Q A   WM
Sbjct: 237 SPSNVFENNVCSYPI--QDNCYVDTNNYGMEGINM-DPLSAMDTYDFPQFDFQTAGNGWM 293

Query: 298 SNDMSDA-LWSMD 309
            + M D+ LW+M+
Sbjct: 294 LDSMGDSTLWNME 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
TAIR|locus:2199357	286	MYB62 "myb domain protein 62"	0.490	0.541	0.806	1.4e-74
TAIR|locus:2032975	283	MYB116 "myb domain protein 116	0.487	0.544	0.735	8.6e-71
TAIR|locus:2084269	323	MYB108 "myb domain protein 108	0.920	0.900	0.399	4.6e-57
TAIR|locus:2065226	273	MYB2 "AT2G47190" [Arabidopsis	0.474	0.549	0.618	1.5e-51
TAIR|locus:2202633	243	MYB112 "myb domain protein 112	0.462	0.600	0.639	3.1e-51
TAIR|locus:2089159	226	MYB21 "myb domain protein 21"	0.411	0.575	0.636	1.3e-49
TAIR|locus:2170573	214	MYB24 "myb domain protein 24"	0.367	0.542	0.692	1.2e-47
TAIR|locus:2174324	235	MYB59 "myb domain protein 59"	0.348	0.468	0.663	1.6e-47
TAIR|locus:2084168	206	MYB57 "myb domain protein 57"	0.376	0.577	0.638	1.4e-44
TAIR|locus:2075236	256	MYB48 "myb domain protein 48"	0.335	0.414	0.660	5.2e-43

TAIR|locus:2199357 MYB62 "myb domain protein 62" [Arabidopsis thaliana (taxid:3702)]

 Score = 692 (248.7 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 125/155 (80%), Positives = 141/155 (90%)

Query:    13 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
             K++ +  E + +ELRRGPWTLEEDTLLT+YI  +GEGRWN VAKCAGLKRTGKSCRLRWL
Sbjct:     6 KKKKSFKESEDEELRRGPWTLEEDTLLTNYILHNGEGRWNHVAKCAGLKRTGKSCRLRWL 65

Query:    73 NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
             NYLKPDI+RGNLTPQEQ LILELHSKWGNRWSKIAQ LPGRTDNEIKNYWRTRVQKQARQ
Sbjct:    66 NYLKPDIRRGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQARQ 125

Query:   133 LNIESNSETFFEAVRCYWMPRLLQKMEQNSASPNT 167
             LNIESNS+ FF+AVR +W+PRL++KMEQNS++  T
Sbjct:   126 LNIESNSDKFFDAVRSFWVPRLIEKMEQNSSTTTT 160

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009686 "gibberellin biosynthetic process" evidence=IMP

GO:0016036 "cellular response to phosphate starvation" evidence=IEP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2032975 MYB116 "myb domain protein 116" [Arabidopsis thaliana (taxid:3702)]

 Score = 642 (231.1 bits), Expect = 8.6e-71, Sum P(2) = 8.6e-71
 Identities = 114/155 (73%), Positives = 135/155 (87%)

Query:    12 TKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRW 71
             TK++CN +EE  ++ R+GPWTLEEDTLLT+YI  +GEGRWN++AK +GLKR GKSCRLRW
Sbjct:     5 TKKKCNGNEEGAEQ-RKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSCRLRW 63

Query:    72 LNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
             LNYLKPDIKRGNLTPQEQ LILELHSKWGNRWSKI++ LPGRTDN+IKNYWRTRVQKQAR
Sbjct:    64 LNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQAR 123

Query:   132 QLNIESNSETFFEAVRCYWMPRLLQKMEQNSASPN 166
             QLNI+SNS  F E VR +W PRL+ +++ NS + N
Sbjct:   124 QLNIDSNSHKFIEVVRSFWFPRLINEIKDNSYTNN 158

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2084269 MYB108 "myb domain protein 108" [Arabidopsis thaliana (taxid:3702)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 121/303 (39%), Positives = 180/303 (59%)

Query:    17 NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK 76
             N++ ED+ +L+RGPWT EED  L +YI  +GEGRWN +++CAGL+RTGKSCRLRWLNYL+
Sbjct:    10 NNNMEDEMDLKRGPWTAEEDFKLMNYIATNGEGRWNSLSRCAGLQRTGKSCRLRWLNYLR 69

Query:    77 PDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 136
             PD++RGN+T +EQ LILELHS+WGNRWSKIAQ LPGRTDNEIKNYWRTRVQK A+QL  +
Sbjct:    70 PDVRRGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCD 129

Query:   137 SNSETFFEAVRCYWMPRLLQKMEQNSASPNTLLTNSSAQXXXXXXXXXXXXXXXXXXXXX 196
              NS+ F + ++  WMPRL+++++  SAS     T ++                       
Sbjct:   130 VNSQQFKDTMKYLWMPRLVERIQSASASSAAAATTTTT-TTTGSAGTSSCITTSNNQFMN 188

Query:   197 XXYNSNQTINENSSSETSPNFFPGDFSKISQLQQPGITQQPTSPHAYGNNVCSNQIVPND 256
               YN+N  + +     ++ ++   + S ++      +T+  ++P+       S Q+   +
Sbjct:   189 YDYNNNN-MGQQFGVMSNNDYITPENSSVAVSPASDLTEYYSAPNP-NPEYYSGQM--GN 244

Query:   257 SYYVDCCGFDMEGYSLTDPIAEMSSY---DISSSECQMAEADWMSNDMSDALWSMDDIWQ 313
             SYY D     +    L D   + S     D+++ + + +   W  N ++ A  S D +W 
Sbjct:   245 SYYPD--QNLVSSQLLPDNYFDYSGLLDEDLTAMQ-EQSNLSWFEN-INGAASSSDSLWN 300

Query:   314 LRE 316
             + E
Sbjct:   301 IGE 303

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009620 "response to fungus" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2065226 MYB2 "AT2G47190" [Arabidopsis thaliana (taxid:3702)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 94/152 (61%), Positives = 121/152 (79%)

Query:    17 NS-SEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
             NS + E+  ++R+GPWT EED +L +++  HG+ RWN +A+ +GLKRTGKSCRLRWLNYL
Sbjct:    10 NSPTHEEDSDVRKGPWTEEEDAILVNFVSIHGDARWNHIARSSGLKRTGKSCRLRWLNYL 69

Query:    76 KPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNI 135
             +PD++RGN+T +EQF+IL+LHS WGNRWSKIAQ LPGRTDNEIKNYWRTRVQKQA+ L  
Sbjct:    70 RPDVRRGNITLEEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQAKHLRC 129

Query:   136 ESNSETFFEAVRCYWMPRLLQKMEQNSASPNT 167
             + NS  F E +R  WMPRL++++   S  P T
Sbjct:   130 DVNSNLFKETMRNVWMPRLVERINAQSL-PTT 160

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA;IMP

GO:0005516 "calmodulin binding" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0007165 "signal transduction" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0001046 "core promoter sequence-specific DNA binding" evidence=IDA

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

TAIR|locus:2202633 MYB112 "myb domain protein 112" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 94/147 (63%), Positives = 118/147 (80%)

Query:    13 KRECNSSEEDQQ-ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRW 71
             K E    E+  + E+RRGPWT+EED  L  YI  HGEGRWN +++ AGL RTGKSCRLRW
Sbjct:    18 KEEVEEVEKKMEIEIRRGPWTVEEDMKLVSYISLHGEGRWNSLSRSAGLNRTGKSCRLRW 77

Query:    72 LNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
             LNYL+PDI+RG+++ QEQF+ILELHS+WGNRWSKIAQ LPGRTDNEIKNYWRTRVQK A+
Sbjct:    78 LNYLRPDIRRGDISLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKHAK 137

Query:   132 QLNIESNSETFFEAVRCYWMPRLLQKM 158
              L  + NS+ F + ++  WMPRL++++
Sbjct:   138 LLKCDVNSKQFKDTIKHLWMPRLIERI 164

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2089159 MYB21 "myb domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 1.3e-49, Sum P(2) = 1.3e-49
 Identities = 84/132 (63%), Positives = 107/132 (81%)

Query:     8 RAAGTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSC 67
             R  G+     SS E   E+R+GPWT+EED +L +YI  HG+G WN +AK AGLKRTGKSC
Sbjct:     4 RGGGSSGGSGSSAE--AEVRKGPWTMEEDLILINYIANHGDGVWNSLAKSAGLKRTGKSC 61

Query:    68 RLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ 127
             RLRWLNYL+PD++RGN+TP+EQ +I+ELH+KWGNRWSKIA+ LPGRTDNEIKN+WRTR+Q
Sbjct:    62 RLRWLNYLRPDVRRGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQ 121

Query:   128 KQARQLNIESNS 139
             K  +Q ++ + S
Sbjct:   122 KYIKQSDVTTTS 133

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0048443 "stamen development" evidence=RCA;IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

GO:0048441 "petal development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2170573 MYB24 "myb domain protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 469 (170.2 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 81/117 (69%), Positives = 99/117 (84%)

Query:    13 KRECNS-SEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRW 71
             KRE +  S     E+R+GPWT+EED +L +YI  HGEG WN +AK AGLKRTGKSCRLRW
Sbjct:     3 KRESSGGSGSGDAEVRKGPWTMEEDLILINYIANHGEGVWNSLAKSAGLKRTGKSCRLRW 62

Query:    72 LNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK 128
             LNYL+PD++RGN+TP+EQ  I+ELH+KWGNRWSKIA+ LPGRTDNEIKN+WRT++QK
Sbjct:    63 LNYLRPDVRRGNITPEEQLTIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTKIQK 119

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0048443 "stamen development" evidence=IMP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

TAIR|locus:2174324 MYB59 "myb domain protein 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
 Identities = 73/110 (66%), Positives = 94/110 (85%)

Query:    23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
             Q+E R+GPWT +ED LL +++H  G+ RW+ VAK +GL RTGKSCRLRW+NYL P +KRG
Sbjct:     5 QEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSGLNRTGKSCRLRWVNYLHPGLKRG 64

Query:    83 NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
              +TPQE+ L+LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:    65 KMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 114

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP;RCA

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR|locus:2084168 MYB57 "myb domain protein 57" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 76/119 (63%), Positives = 99/119 (83%)

Query:    13 KRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL 72
             K    S +E++  +R+GPWT+EED +L +YI  HGEG WN VAK +GLKRTGKSCRLRWL
Sbjct:    12 KATITSQKEEEGTVRKGPWTMEEDFILFNYILNHGEGLWNSVAKASGLKRTGKSCRLRWL 71

Query:    73 NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQAR 131
             NYL+PD++RGN+T +EQ LI++LH+K GNRWSKIA+ LPGRTDNEIKN+WRT++Q+  +
Sbjct:    72 NYLRPDVRRGNITEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRTKIQRHMK 130

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IEP

GO:0080086 "stamen filament development" evidence=IGI

TAIR|locus:2075236 MYB48 "myb domain protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 70/106 (66%), Positives = 91/106 (85%)

Query:    27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTP 86
             R+GPWT +ED LL +++H  G+ RW+ +AK +GL RTGKSCRLRW+NYL P +KRG +TP
Sbjct:     8 RKGPWTEQEDILLVNFVHLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTP 67

Query:    87 QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
             QE+ L+LELH+KWGNRWSKIA+ LPGRTDNEIKNYWRT ++K+A++
Sbjct:    68 QEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQE 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS;TAS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MYB164 hypothetical protein (314 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	316
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	4e-41
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	4e-40
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-13
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	1e-11
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	1e-10
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	4e-10
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	4e-08
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-04
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	3e-04

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  143 bits (361), Expect = 4e-41
 Identities = 65/120 (54%), Positives = 85/120 (70%)

Query: 26  LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLT 85
           ++RGPWT+EED +L  +I + GEGRW  + K AGL R GKSCRLRW+NYL+P +KRG +T
Sbjct: 23  MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGIT 82

Query: 86  PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEA 145
             E+ LIL LH   GNRWS IA  +PGRTDNEIKNYW T ++K+  +  I+  +    +A
Sbjct: 83  SDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHKPLDA 142

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  145 bits (367), Expect = 4e-40
 Identities = 66/117 (56%), Positives = 89/117 (76%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           +Q+LR+G W+ EED  L  +I ++G G W+ V K AGL+R GKSCRLRW+NYL+PD+KRG
Sbjct: 9   KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRG 68

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS 139
             + QE+ LI+ELH+  GNRWS+IA  LPGRTDNEIKN W + ++K+ RQ  I+ N+
Sbjct: 69  TFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNT 125

Length = 459

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 68.7 bits (169), Expect = 2e-15
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
          RGPWT EED LL   + +HG G W+ +AK     RT   C+ RW NYL
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLP-GRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 63.3 bits (155), Expect = 2e-13
 Identities = 25/45 (55%), Positives = 30/45 (66%), Gaps = 1/45 (2%)

Query: 81  RGNLTPQEQFLILELHSKWGNR-WSKIAQCLPGRTDNEIKNYWRT 124
           RG  TP+E  L++E   K GN  WSKIA+ LPGRTDN+ KN W  
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 62.2 bits (152), Expect = 5e-13
 Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP 77
          +G WT EED LL   + ++G+  W  +AK     RT + CR RW N LKP
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
          PWT EED LL   + ++G+  W  +AK     RT K CR RW N L
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 29/100 (29%), Positives = 47/100 (47%), Gaps = 1/100 (1%)

Query: 23  QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           Q + + G W   ED  L   + + G   W+ VA    +  TGK    RW N+L P +K+ 
Sbjct: 15  QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVAS-LLISSTGKQSSNRWNNHLNPQLKKK 73

Query: 83  NLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYW 122
           N + +E   +++L  + G +WS IA     RT  +    +
Sbjct: 74  NWSEEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERY 113

Length = 512

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.1 bits (131), Expect = 4e-10
 Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 85  TPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRT 124
           T +E  L+LE   K+G N W KIA+ LPGRT  + +  WR 
Sbjct: 3   TEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 81  RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRT 124
           +G  T +E  L++EL  K+G N W KIA+ LPGRT  + +  WR 
Sbjct: 1   KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRN 45

Length = 49

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQE 88
          WT EED  L   + ++G   W  +A+   L RT  +CR RW   L+P   RG  T +E
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEE--LGRTPSACRDRWRRKLRPKRSRGPWTKEE 55

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           T +E   +L+L  K+GN W +IA+ L GRT +  ++ WR +++ +  +
Sbjct: 2   TEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRSR 48

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 30 PWTLEEDTLLTHYIHQHGEGRWNMVAK--CAGLKRTGKSCRLRWLNYLK 76
           WT EED  L   + ++G G W  + K       RT    + +W N  K
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRNLKK 50

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03091	459	hypothetical protein; Provisional	100.0
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.67
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.55
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.51
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.5
PLN03212	249	Transcription repressor MYB5; Provisional	99.45
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.43
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.43
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.37
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.35
PLN03091	459	hypothetical protein; Provisional	99.33
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.15
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.1
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.03
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.02
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.97
COG5147	512	REB1 Myb superfamily proteins, including transcrip	98.47
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	98.05
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.97
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.88
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.74
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.46
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.34
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.32
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.13
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.98
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.94
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.93
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	96.86
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.69
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.56
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.53
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.46
PRK13923	170	putative spore coat protein regulator protein YlbO	96.32
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	96.11
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.73
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	95.69
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.42
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.3
PRK13923	170	putative spore coat protein regulator protein YlbO	95.2
KOG4282	345	consensus Transcription factor GT-2 and related pr	93.07
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.92
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	92.82
KOG1194	534	consensus Predicted DNA-binding protein, contains	90.55
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	89.74
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	88.81
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	85.54
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	85.23
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	85.14
KOG4282	345	consensus Transcription factor GT-2 and related pr	84.12

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=2.4e-34  Score=262.42  Aligned_cols=126  Identities=52%  Similarity=1.004  Sum_probs=116.6

Q ss_pred             CccccCCChhhhcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHH
Q 021188           12 TKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFL   91 (316)
Q Consensus        12 ~k~~~~~~~~~~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~   91 (316)
                      ...+||.+    ++++|++||+|||++|+++|++||..+|..||+.++.+|+++|||+||.++|+|.+++++||+|||++
T Consensus        13 ~~~pcc~K----~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~l   88 (249)
T PLN03212         13 KTTPCCTK----MGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDL   88 (249)
T ss_pred             CCCCCccc----CCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHH
Confidence            34456555    67999999999999999999999988999999999669999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH
Q 021188           92 ILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET  141 (316)
Q Consensus        92 Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~  141 (316)
                      |++++.+||++|..||+.|||||+++||+||+.++++.+++.++.+.+..
T Consensus        89 Llel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~i~p~~~k  138 (249)
T PLN03212         89 ILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHK  138 (249)
T ss_pred             HHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcCCCCCCCC
Confidence            99999999999999999999999999999999999999999888776643

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=4.7e-34  Score=263.50  Aligned_cols=115  Identities=51%  Similarity=0.915  Sum_probs=109.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChh
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWS  104 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~  104 (316)
                      .+.||+||+|||++|+++|++||.++|..||+.+|++|++++||.||.|||+|++++|.||+|||++|+++++.+|++|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs   85 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWS   85 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHH
Confidence            35679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Q 021188          105 KIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS  139 (316)
Q Consensus       105 ~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e  139 (316)
                      .||++|||||+++|||+|+..+++++++.++.+..
T Consensus        86 ~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~~~~~~  120 (238)
T KOG0048|consen   86 LIAGRLPGRTDNEVKNHWNTHLKKKLLKMGIDPST  120 (238)
T ss_pred             HHHhhCCCcCHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999999999988754433

>PLN03091 hypothetical protein; Provisional

Probab=100.00  E-value=4.5e-33  Score=270.70  Aligned_cols=126  Identities=53%  Similarity=0.952  Sum_probs=117.1

Q ss_pred             cccCCChhhhcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHH
Q 021188           14 RECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLIL   93 (316)
Q Consensus        14 ~~~~~~~~~~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll   93 (316)
                      ..||.+    ++++||+||+|||++|+++|.+||.++|..||+.++++|+++|||+||.++|+|.+++++||+|||++|+
T Consensus         4 ~~Cc~K----qklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLL   79 (459)
T PLN03091          4 HSCCYK----QKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLII   79 (459)
T ss_pred             CccCcC----CCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHH
Confidence            345555    6799999999999999999999999999999999877999999999999999999999999999999999


Q ss_pred             HHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHH
Q 021188           94 ELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFF  143 (316)
Q Consensus        94 ~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~  143 (316)
                      +++++||++|.+||+.|+|||+++||+||+.+++++++..++.+.+...+
T Consensus        80 eL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLKKklr~~~I~p~t~kpl  129 (459)
T PLN03091         80 ELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPL  129 (459)
T ss_pred             HHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence            99999999999999999999999999999999999999888887665433

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=4.6e-20  Score=185.37  Aligned_cols=146  Identities=23%  Similarity=0.382  Sum_probs=129.1

Q ss_pred             CccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCcccccccc---------------------
Q 021188           12 TKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCR---------------------   68 (316)
Q Consensus        12 ~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr---------------------   68 (316)
                      +.-.|.+.|..  +|+++|..|+.|||++|+.+...+|..+|.+||..+|++|+..||.                     
T Consensus       235 S~~~~~~~W~n~l~P~~nk~~WS~EE~E~L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~L~ekeWsEEed~  314 (939)
T KOG0049|consen  235 SEWAVKSKWYNELNPKWNKEHWSNEEVEKLKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQLSEKEWSEEEDT  314 (939)
T ss_pred             CHHHHHHHHhhhcCCccchhccChHHHHHHHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHHHHHhhhcchhhhH
Confidence            44455555633  7999999999999999999999999999999999999779999997                     


Q ss_pred             ---------------------------------chhccccCCCCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCC
Q 021188           69 ---------------------------------LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRT  114 (316)
Q Consensus        69 ---------------------------------~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT  114 (316)
                                                       .||...|+|.+++|+||.+||.+|+.+|.+||. .|.+|...+|||+
T Consensus       315 kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRS  394 (939)
T KOG0049|consen  315 KLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRS  394 (939)
T ss_pred             HHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCcc
Confidence                                             477788999999999999999999999999996 6999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCc-hHHHHHHhhhcCChhHHH
Q 021188          115 DNEIKNYWRTRVQKQARQLNIESNS-ETFFEAVRCYWMPRLLQK  157 (316)
Q Consensus       115 ~~q~knRW~~~l~k~~r~~~~~~~e-~~~~~~i~~~~~p~~~~k  157 (316)
                      +.|||.||.+.|...+|+..|+-.+ ++++..|..|..-.+.+-
T Consensus       395 dsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~YG~g~Wakc  438 (939)
T KOG0049|consen  395 DSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKVYGKGNWAKC  438 (939)
T ss_pred             HHHHHHHHHHHHHHhhccCceeecchHHHHHHHHHHccchHHHH
Confidence            9999999999999999999998765 559999998877776554

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=2.3e-20  Score=187.58  Aligned_cols=123  Identities=23%  Similarity=0.381  Sum_probs=108.7

Q ss_pred             hhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCC
Q 021188            6 AARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGN   83 (316)
Q Consensus         6 ~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~   83 (316)
                      .-|+++++.+-..+|..  +|++++|+||.+||.+|+.+|.+||..+|.+|-+.+| +|+..|||+||.|.|+...|++.
T Consensus       336 ~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vP-nRSdsQcR~RY~nvL~~s~K~~r  414 (939)
T KOG0049|consen  336 QYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVP-NRSDSQCRERYTNVLNRSAKVER  414 (939)
T ss_pred             HhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcC-CccHHHHHHHHHHHHHHhhccCc
Confidence            34677777777666644  6999999999999999999999999999999999999 99999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           84 LTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        84 WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      ||-.||+.|+.+|.+|| ++|.+||..||+||+.|...|-...+.-+
T Consensus       415 W~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~k  461 (939)
T KOG0049|consen  415 WTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAAK  461 (939)
T ss_pred             eeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHHH
Confidence            99999999999999999 69999999999999966655544444433

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.67  E-value=4.1e-17  Score=119.30  Aligned_cols=60  Identities=43%  Similarity=0.800  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHH
Q 021188           31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLI   92 (316)
Q Consensus        31 WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~L   92 (316)
                      ||+|||++|+++|.+||. +|..||+.|| .|++.+|+.||.++|.+.+++++||++||.+|
T Consensus         1 WT~eEd~~L~~~~~~~g~-~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-DWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS--HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-CHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            999999999999999996 9999999998 89999999999999999999999999999987

...

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.55  E-value=4.3e-15  Score=149.29  Aligned_cols=108  Identities=27%  Similarity=0.487  Sum_probs=103.0

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCC
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR  102 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~  102 (316)
                      ..+++.|.|+..||+.|..+|+++|..+|..||..+. .|+++||+.||.++++|.+++..|+.|||..|+.+..++|..
T Consensus        15 ~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          15 QTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             cceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            3568899999999999999999999999999999998 799999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188          103 WSKIAQCLPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus       103 W~~IA~~lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      |..||..+++|+..+|.+||...+.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999988877665

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=6.9e-15  Score=145.44  Aligned_cols=105  Identities=24%  Similarity=0.528  Sum_probs=100.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhh
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSK  105 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~  105 (316)
                      ++.|-|+.-||+.|..+|.+||.+.|.+|++.+. ..+++||+.||..+|+|.+++..|+.|||++||.+...+...|..
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~-~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrt   83 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLN-RKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRT   83 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHh-hcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccch
Confidence            6789999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188          106 IAQCLPGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus       106 IA~~lpgRT~~q~knRW~~~l~k~~r~  132 (316)
                      ||..| ||+++||-.||.+++-..+..
T Consensus        84 Ia~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   84 IADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            99999 999999999999988766543

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.50  E-value=7.9e-15  Score=135.63  Aligned_cols=86  Identities=15%  Similarity=0.313  Sum_probs=76.1

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC-CCCHHHHHHHHHHHHHHHHHhcCCCCCchHH------------
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP-GRTDNEIKNYWRTRVQKQARQLNIESNSETF------------  142 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~q~knRW~~~l~k~~r~~~~~~~e~~~------------  142 (316)
                      +.+.+|+||+|||++|+++|++|| ++|..||+.++ +|++++||.||.++|++.++++.|+.+|+.+            
T Consensus         5 ~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrW   84 (238)
T KOG0048|consen    5 PELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRW   84 (238)
T ss_pred             ccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHH
Confidence            345579999999999999999999 57999999998 9999999999999999999999999999554            


Q ss_pred             -----------HHHHhhhcCChhHHHhhhcC
Q 021188          143 -----------FEAVRCYWMPRLLQKMEQNS  162 (316)
Q Consensus       143 -----------~~~i~~~~~p~~~~k~~q~~  162 (316)
                                 .+.|++||...+.+++.+..
T Consensus        85 s~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   85 SLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence                       44555899999998887664

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.45  E-value=1.1e-13  Score=127.20  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=65.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHh
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCL-PGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVR  147 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l-pgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~~~i~  147 (316)
                      ++.+++++||+|||++|+++|++|| .+|..||+.+ ++||++|||.||.++|++.+++..|+.+|+.++..+.
T Consensus        20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~   93 (249)
T PLN03212         20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLH   93 (249)
T ss_pred             cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHH
Confidence            3578999999999999999999999 5899999998 7999999999999999999999999999988554444

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.43  E-value=3.6e-14  Score=99.57  Aligned_cols=48  Identities=44%  Similarity=0.744  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      |++||+|||++|+++|.+||.++|..||+.||.+||+.||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            689999999999999999999669999999988999999999999875

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.43  E-value=1.6e-13  Score=139.37  Aligned_cols=106  Identities=25%  Similarity=0.501  Sum_probs=94.4

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCC--ccCCCCHHHHHHHHHHHH-------
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDI--KRGNLTPQEQFLILELHS-------   97 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~l--kkg~WT~EED~~Ll~lv~-------   97 (316)
                      .+|.||+||++.|..+|.++|. +|..|++.|+  |.+..||+||+++..+.-  +++.||.||+++|+++|.       
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~  459 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREAL  459 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhcc-cHHHHHHHHc--cCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhh
Confidence            8999999999999999999997 9999999997  999999999999999874  899999999999999994       


Q ss_pred             hc-------------------CCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188           98 KW-------------------GNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNI  135 (316)
Q Consensus        98 ~~-------------------G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~  135 (316)
                      ++                   +-.|..|++.+..|+..|||-+|..++.........
T Consensus       460 q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~  516 (607)
T KOG0051|consen  460 QPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQ  516 (607)
T ss_pred             cccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccc
Confidence            33                   125999999889999999999999988766544433

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.37  E-value=6.2e-13  Score=93.31  Aligned_cols=46  Identities=35%  Similarity=0.650  Sum_probs=41.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCC-hhhhhhcCC-CCCHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNR-WSKIAQCLP-GRTDNEIKNYWRTRV  126 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~-W~~IA~~lp-gRT~~q~knRW~~~l  126 (316)
                      +++||+|||++|+++|.+||.. |..||..|+ +||..||++||+.++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999998 999999999999864

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.35  E-value=3.4e-13  Score=98.51  Aligned_cols=58  Identities=33%  Similarity=0.567  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH
Q 021188           84 LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET  141 (316)
Q Consensus        84 WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~  141 (316)
                      ||+|||.+|+++|.+||.+|..||+.|+.||..+|++||+..|++..++..++.+++.
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~   58 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQ   58 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHh
Confidence            9999999999999999999999999996699999999999988877777777776654

...

>PLN03091 hypothetical protein; Provisional

Probab=99.33  E-value=9.4e-13  Score=129.26  Aligned_cols=70  Identities=17%  Similarity=0.368  Sum_probs=63.7

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcC-CCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCL-PGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEA  145 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l-pgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~~~  145 (316)
                      +..+++++||+|||++|+++|.+|| .+|..||+.+ +||+++|||.||.++|++.++++.|+.+|+.++..
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLe   80 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIE   80 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHH
Confidence            4578999999999999999999999 5799999988 59999999999999999999999999999874443

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.15  E-value=4.8e-11  Score=81.68  Aligned_cols=47  Identities=40%  Similarity=0.809  Sum_probs=44.1

Q ss_pred             cCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      +++||++||.+|+.++.+|| .+|..||..|++||+.+|+.||..+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999 999999999999999999999998764

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.10  E-value=4.9e-11  Score=81.63  Aligned_cols=48  Identities=44%  Similarity=0.824  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      +++||++||++|+.++.+||..+|..||+.++ +|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~-~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELP-GRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcC-CCCHHHHHHHHHHHcC
Confidence            57899999999999999999559999999999 9999999999988764

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.03  E-value=3.6e-10  Score=76.19  Aligned_cols=43  Identities=44%  Similarity=0.772  Sum_probs=41.2

Q ss_pred             CCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      +||++|+.+|+.++.+|| .+|..||+.+++||..+|++||..+
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~   44 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL   44 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 8999999999999999999999875

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.02  E-value=2.7e-10  Score=116.08  Aligned_cols=119  Identities=24%  Similarity=0.379  Sum_probs=97.5

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC-----------------------CcchhhcccCCccccccccchh---ccccCCC
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEG-----------------------RWNMVAKCAGLKRTGKSCRLRW---LNYLKPD   78 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~-----------------------~W~~IA~~l~~~Rt~~qcr~Rw---~n~L~p~   78 (316)
                      .++.+.|+.+||+.|-+.|..|-..                       -|+.|.+.|| -|+...++.+-   .+.+.+ 
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp-~R~~~siy~~~rR~y~~FE~-  382 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLP-YRDRKSIYHHLRRAYTPFEN-  382 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcC-cccchhHHHHHHhcCCcccc-
Confidence            4666999999999999999876211                       2678888898 69999998733   334443 


Q ss_pred             CccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHH--HhcCCCCCchH-HHHHHh
Q 021188           79 IKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA--RQLNIESNSET-FFEAVR  147 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~--r~~~~~~~e~~-~~~~i~  147 (316)
                       ++|.||+||++.|..+|.++|+.|..|++.| ||.+.+|+.||+.+++..-  +++.|+-+++. +++.|.
T Consensus       383 -~rg~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  383 -KRGKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             -ccCCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence             8999999999999999999999999999999 9999999999999998774  66667766655 666553

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.97  E-value=3.1e-10  Score=76.47  Aligned_cols=45  Identities=47%  Similarity=0.830  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        30 ~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      +||.+||++|+.++.++|..+|..||+.++ +|++.+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~-~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELP-GRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcC-CCCHHHHHHHHHHhC
Confidence            599999999999999999669999999999 899999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=98.47  E-value=7.8e-08  Score=97.34  Aligned_cols=120  Identities=14%  Similarity=0.201  Sum_probs=98.6

Q ss_pred             hhhhhhhhcCccccCCCh--hhhcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188            3 TMRAARAAGTKRECNSSE--EDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus         3 ~~~~~~~~~~k~~~~~~~--~~~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      .|+++...+..++|+.+|  ...|.++++.|+.|||+.|+.+..++|. .|..||..++ +|+..+|.+||.+.|.+...
T Consensus        45 ~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~wstia~~~d-~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          45 KVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWSTIADYKD-RRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             HHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhhhhccccC-ccchHHHHHHHHHHhhhhhc
Confidence            467777778899999999  4479999999999999999999999998 7999999999 99999999999999987655


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                       ..|+..++...+..+..|+..|..+....-.+-...|.+++.++
T Consensus       123 -~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~  166 (512)
T COG5147         123 -THDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASY  166 (512)
T ss_pred             -cccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHH
Confidence             78888888777777777777777776655555555555655443

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=98.05  E-value=2.6e-07  Score=92.42  Aligned_cols=70  Identities=27%  Similarity=0.541  Sum_probs=61.9

Q ss_pred             hhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188            4 MRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus         4 ~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      ++......++++|..+|.+  .|.|++--|+.|||++|+.+...... .|..||..|+  |++.||.+||.+.|.
T Consensus        33 i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~-qwrtIa~i~g--r~~~qc~eRy~~ll~  104 (617)
T KOG0050|consen   33 IASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPT-QWRTIADIMG--RTSQQCLERYNNLLD  104 (617)
T ss_pred             HHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCC-ccchHHHHhh--hhHHHHHHHHHHHHH
Confidence            3444566789999999987  79999999999999999999999887 8999999997  999999999987654

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.97  E-value=5.5e-06  Score=60.49  Aligned_cols=49  Identities=14%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCc---chhhcccCCcc-ccccccchhcccc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRW---NMVAKCAGLKR-TGKSCRLRWLNYL   75 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W---~~IA~~l~~~R-t~~qcr~Rw~n~L   75 (316)
                      ++-.||+||..+++++|+.+|.++|   ..|++.|+..| |..||+.|++.|.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999999899   99999987566 9999999987764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.88  E-value=5.3e-06  Score=81.81  Aligned_cols=50  Identities=26%  Similarity=0.555  Sum_probs=46.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      .+-...||++|+-+|++++..||.|||..||.++| .|+..+|+++|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIG-tKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIG-TKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            45678899999999999999999999999999999 999999999999864

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.74  E-value=6e-05  Score=55.05  Aligned_cols=46  Identities=17%  Similarity=0.224  Sum_probs=40.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC-Ch---hhhhhcCC-CC-CHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGN-RW---SKIAQCLP-GR-TDNEIKNYWRTRV  126 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~-~W---~~IA~~lp-gR-T~~q~knRW~~~l  126 (316)
                      +-.||+||..++++++..+|. +|   ..|++.|. .| |..||+.|.+.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            568999999999999999996 99   99999883 45 9999999987765

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.46  E-value=0.00017  Score=71.31  Aligned_cols=49  Identities=27%  Similarity=0.466  Sum_probs=44.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           78 DIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      .+-...||.+|+.+||+++..|| ++|..||.++..|+..+|+.+|.+++
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34456899999999999999999 89999999999999999999997654

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.34  E-value=0.00055  Score=61.92  Aligned_cols=98  Identities=23%  Similarity=0.363  Sum_probs=73.2

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcccC--CccccccccchhccccC-CCC--------------------ccCCCCH
Q 021188           30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAG--LKRTGKSCRLRWLNYLK-PDI--------------------KRGNLTP   86 (316)
Q Consensus        30 ~WT~eED~~L~~lV~~~g~~~W~~IA~~l~--~~Rt~~qcr~Rw~n~L~-p~l--------------------kkg~WT~   86 (316)
                      +|+++.|-+|+.+|....  +-..|+..+.  ..-|-..+.+||+..|. |.+                    .+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            699999999999998655  5677766543  25577788899997653 322                    3568999


Q ss_pred             HHHHHHHHHHHhcCC---Chhhhh----hcC-CCCCHHHHHHHHHHHHHHH
Q 021188           87 QEQFLILELHSKWGN---RWSKIA----QCL-PGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        87 EED~~Ll~lv~~~G~---~W~~IA----~~l-pgRT~~q~knRW~~~l~k~  129 (316)
                      +|+++|.........   .+.+|-    ..| ++||+.++..+|+.+.+..
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~  129 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYH  129 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhc
Confidence            999999997766543   477773    334 8899999999999655443

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.32  E-value=0.00027  Score=61.65  Aligned_cols=52  Identities=23%  Similarity=0.412  Sum_probs=45.2

Q ss_pred             ccCCCCHHHHHHHHHHHHhc---CC----ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188           80 KRGNLTPQEQFLILELHSKW---GN----RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~---G~----~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~  132 (316)
                      +...||.|||.+|.+.|.+|   |+    -+..+++.| +||..+|.-||+.++|++...
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            56789999999999999887   33    389999999 999999999999999977553

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.13  E-value=0.00021  Score=71.33  Aligned_cols=46  Identities=33%  Similarity=0.621  Sum_probs=43.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      +...||.+|..+|+++|+.||. +|.+||.++| +|+..||..|+.+.
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~HVg-tKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGD-DWDKVARHVG-TKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhh-hHHHHHHHhC-CCCHHHHHHHHHcC
Confidence            6679999999999999999998 9999999999 99999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.98  E-value=0.0004  Score=70.79  Aligned_cols=47  Identities=34%  Similarity=0.633  Sum_probs=43.7

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      --++.||.+|+.+|+++|+.||. +|.+||.+++ +|+..||..++.+.
T Consensus       251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~hVg-~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  251 SARPNWTEQETLLLLEAIEMYGD-DWNKVADHVG-TKSQEQCILKFLRL  297 (506)
T ss_pred             cCCCCccHHHHHHHHHHHHHhcc-cHHHHHhccC-CCCHHHHHHHHHhc
Confidence            45789999999999999999998 9999999999 99999999998763

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.94  E-value=0.00098  Score=49.95  Aligned_cols=51  Identities=14%  Similarity=0.308  Sum_probs=32.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcC-------CC--hhhhhhcCC-CCCHHHHHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWG-------NR--WSKIAQCLP-GRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G-------~~--W~~IA~~lp-gRT~~q~knRW~~~l~k~~r  131 (316)
                      +.+||.|||..|++.|.++.       ++  |..+++.-+ .+|-.+.|+||...|+...+
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            45899999999999996552       12  999999887 99999999999888876544

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.93  E-value=0.00098  Score=68.02  Aligned_cols=46  Identities=26%  Similarity=0.432  Sum_probs=42.7

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      -++.||++|..+|++.+..||..|.+||.++.+||..+|-.|+..+
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999999988653

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=96.86  E-value=0.001  Score=66.57  Aligned_cols=44  Identities=25%  Similarity=0.397  Sum_probs=41.8

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT  124 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~  124 (316)
                      ...|+.+|..+|++.|..||..|.+||+++..||..||--||.+
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~  322 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQ  322 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHc
Confidence            34899999999999999999999999999999999999999975

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.69  E-value=0.0012  Score=51.26  Aligned_cols=51  Identities=31%  Similarity=0.547  Sum_probs=35.6

Q ss_pred             cCCCCHHHHHHHHHHHHh------cC--C------ChhhhhhcC----CCCCHHHHHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSK------WG--N------RWSKIAQCL----PGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~------~G--~------~W~~IA~~l----pgRT~~q~knRW~~~l~k~~r  131 (316)
                      +..||.+|...||+++.+      ++  +      -|..||..|    ..||+.||+.+|.++.+...+
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~   69 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKK   69 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            357999999999999877      21  1      399999877    369999999999996665544

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.56  E-value=0.0013  Score=49.30  Aligned_cols=52  Identities=29%  Similarity=0.496  Sum_probs=33.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--cchhhcccCCccccccccchhccccCCCC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGE------GR--WNMVAKCAGLKRTGKSCRLRWLNYLKPDI   79 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~------~~--W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~l   79 (316)
                      +-+||.|||+.|++.|..+..      |+  |.++++.-++.+|-.+-|+||...|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            468999999999999976531      22  99999887778999999999999887643

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.53  E-value=0.00079  Score=52.25  Aligned_cols=48  Identities=35%  Similarity=0.677  Sum_probs=32.9

Q ss_pred             cCCCCHHHHHHHHHHHHHh------CC-C------Ccchhhccc---CCccccccccchhcccc
Q 021188           28 RGPWTLEEDTLLTHYIHQH------GE-G------RWNMVAKCA---GLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~------g~-~------~W~~IA~~l---~~~Rt~~qcr~Rw~n~L   75 (316)
                      +..||.+|...|++++...      +. +      -|..||..|   |..|++.||+.||.+..
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~   64 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK   64 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            4579999999999999871      11 1      399999986   55799999999998753

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.46  E-value=0.001  Score=58.10  Aligned_cols=50  Identities=34%  Similarity=0.703  Sum_probs=43.2

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC-C-----CcchhhcccCCccccccccchhccccCC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGE-G-----RWNMVAKCAGLKRTGKSCRLRWLNYLKP   77 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~-~-----~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p   77 (316)
                      .|+..||.|||.+|.+.|-+|-. |     .+.++++.++  ||+..|.=||..++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L~--RTsAACGFRWNs~VRk   57 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRALN--RTAAACGFRWNAYVRK   57 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHc--ccHHHhcchHHHHHHH
Confidence            57889999999999999999843 2     4889999986  9999999999988764

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.32  E-value=0.0045  Score=54.74  Aligned_cols=52  Identities=19%  Similarity=0.286  Sum_probs=43.7

Q ss_pred             CccCCCCHHHHHHHHHHHHhcCCC-------hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188           79 IKRGNLTPQEQFLILELHSKWGNR-------WSKIAQCLPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G~~-------W~~IA~~lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      .+...||.|||.+|.+.|..|+..       ...++..| +||..+|.-||+..++++..
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            456789999999998888888732       67777788 99999999999999997654

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=96.11  E-value=0.0019  Score=61.90  Aligned_cols=50  Identities=22%  Similarity=0.515  Sum_probs=45.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      +----|+.+|+-+|++...-.|-|||..||..+| .|+...|+++|..++.
T Consensus        61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiG-sr~kee~k~HylK~y~  110 (432)
T COG5114          61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIG-SRAKEEIKSHYLKMYD  110 (432)
T ss_pred             ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHh-hhhhHHHHHHHHHHHh
Confidence            3345699999999999999999999999999999 9999999999998765

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.73  E-value=0.03  Score=42.51  Aligned_cols=52  Identities=27%  Similarity=0.509  Sum_probs=41.5

Q ss_pred             cCCCCHHHHHHHHHHHHhcC----C-------------ChhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHh
Q 021188           81 RGNLTPQEQFLILELHSKWG----N-------------RWSKIAQCL-----PGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G----~-------------~W~~IA~~l-----pgRT~~q~knRW~~~l~k~~r~  132 (316)
                      +..||.+|...|++++.+|.    +             -|..|+..|     +.||..+++.+|.++.....++
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk~   75 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKKK   75 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            46899999999999998872    1             299999765     3599999999999977655443

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=95.69  E-value=0.037  Score=61.32  Aligned_cols=102  Identities=14%  Similarity=0.225  Sum_probs=76.8

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccc-------hhccc----------------------------
Q 021188           30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRL-------RWLNY----------------------------   74 (316)
Q Consensus        30 ~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~-------Rw~n~----------------------------   74 (316)
                      .|+..+=..++.+..+||..+-..||..|. +++...++.       ||...                            
T Consensus       826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477777777778888888888889999997 788777652       22210                            


Q ss_pred             --------------c-CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhh------------cCCCCCHHHHHHHHHHHH
Q 021188           75 --------------L-KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQ------------CLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        75 --------------L-~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~------------~lpgRT~~q~knRW~~~l  126 (316)
                                    + .+..++..+|+|||..|+-.+.+|| ++|..|..            .+..||+..|..|...++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                          0 0222345699999999999999999 78999943            234799999999999999


Q ss_pred             HHHHHh
Q 021188          127 QKQARQ  132 (316)
Q Consensus       127 ~k~~r~  132 (316)
                      +-..|.
T Consensus       985 ~~~~~e  990 (1033)
T PLN03142        985 RLIEKE  990 (1033)
T ss_pred             HHHHHH
Confidence            877554

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.42  E-value=0.015  Score=55.90  Aligned_cols=47  Identities=23%  Similarity=0.450  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      -..|+..|+.+|++.....| ++|..||.++..|+...||.+|..+.-
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 899999999999999999999976543

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.30  E-value=0.0061  Score=46.40  Aligned_cols=49  Identities=24%  Similarity=0.456  Sum_probs=40.2

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC----------------CCcchhhccc----CCccccccccchhcccc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGE----------------GRWNMVAKCA----GLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~----------------~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L   75 (316)
                      |+..||.+|.+.|+++|.+|..                .-|..|+..|    +..|+..|++.+|.++.
T Consensus         1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4678999999999999998731                1499999877    22799999999998764

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=95.20  E-value=0.006  Score=53.92  Aligned_cols=51  Identities=27%  Similarity=0.562  Sum_probs=41.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCC------CcchhhcccCCccccccccchhccccCC
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEG------RWNMVAKCAGLKRTGKSCRLRWLNYLKP   77 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~------~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p   77 (316)
                      ..|+..||.|||.+|.+.|.+|+..      -...++..+.  |+..+|..||..++..
T Consensus         2 k~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L~--rt~aac~fRwNs~vrk   58 (170)
T PRK13923          2 KTRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDALK--RTAAACGFRWNSVVRK   58 (170)
T ss_pred             cchhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--hhHHHHHhHHHHHHHH
Confidence            3578999999999999999998653      2566677765  9999999999766653

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=93.07  E-value=0.17  Score=49.28  Aligned_cols=52  Identities=15%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             cCCCCHHHHHHHHHHHHhc----------CCChhhhhhcC----CCCCHHHHHHHHHHHHHHHHHh
Q 021188           81 RGNLTPQEQFLILELHSKW----------GNRWSKIAQCL----PGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~----------G~~W~~IA~~l----pgRT~~q~knRW~~~l~k~~r~  132 (316)
                      ...|+.+|-..||++..+.          +..|..||+.+    .-||+.+||++|.++.++..+.
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~  119 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKE  119 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence            4689999999999998653          23499999865    3499999999999987776553

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.92  E-value=0.15  Score=50.33  Aligned_cols=86  Identities=15%  Similarity=0.260  Sum_probs=64.3

Q ss_pred             CcchhhcccCCccccccccchhccccCCC-------------------------CccCCCCHHHHHHHHHHHHhcCCChh
Q 021188           50 RWNMVAKCAGLKRTGKSCRLRWLNYLKPD-------------------------IKRGNLTPQEQFLILELHSKWGNRWS  104 (316)
Q Consensus        50 ~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~-------------------------lkkg~WT~EED~~Ll~lv~~~G~~W~  104 (316)
                      .|..+.=..+ -|...-...||.+.-++.                         ++...||.+|-+-|++|++.|.-+|-
T Consensus        75 ~W~w~pFtn~-aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~  153 (445)
T KOG2656|consen   75 PWKWVPFTNS-ARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFF  153 (445)
T ss_pred             CceeeccCCc-cccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEE
Confidence            4655554444 566666666776653221                         22356999999999999999999999


Q ss_pred             hhhhc-----CCC-CCHHHHHHHHHHHHHHHHHhcCCC
Q 021188          105 KIAQC-----LPG-RTDNEIKNYWRTRVQKQARQLNIE  136 (316)
Q Consensus       105 ~IA~~-----lpg-RT~~q~knRW~~~l~k~~r~~~~~  136 (316)
                      .||..     ++. ||-.++|.||+...++.++-....
T Consensus       154 VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s  191 (445)
T KOG2656|consen  154 VIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPS  191 (445)
T ss_pred             EEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCC
Confidence            99976     655 999999999999999888765444

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=92.82  E-value=0.16  Score=42.46  Aligned_cols=54  Identities=24%  Similarity=0.389  Sum_probs=42.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcCC----Chhhhhhc------------CCCCCHHHHHHHHHHHHHHHHH
Q 021188           78 DIKRGNLTPQEQFLILELHSKWGN----RWSKIAQC------------LPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~~------------lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      ..++..||++||..|+-.+.+||-    .|..|...            +..||+..+..|...+++-..|
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~K  115 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLIEK  115 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHHHH
Confidence            456779999999999999999995    69888653            2469999999999998876544

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=90.55  E-value=0.91  Score=45.85  Aligned_cols=48  Identities=21%  Similarity=0.340  Sum_probs=43.4

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      ....||.||-.++-++...||.++.+|.+.||.|+-..+..+|....+
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK  233 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKK  233 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999876544

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=89.74  E-value=0.78  Score=35.73  Aligned_cols=46  Identities=30%  Similarity=0.572  Sum_probs=34.4

Q ss_pred             CCCHHHHHHHHHHHHhc---CC----------ChhhhhhcC---C--CCCHHHHHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKW---GN----------RWSKIAQCL---P--GRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~---G~----------~W~~IA~~l---p--gRT~~q~knRW~~~l~k  128 (316)
                      .||++++..|++++.+.   |+          .|..|+..|   +  ..+..||++||..+.+.
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~   64 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKD   64 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHH
Confidence            49999999999998543   21          299998876   2  25778999999875554

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=88.81  E-value=0.62  Score=46.04  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      .+|+.+|-++..++...+|..+..|+..+|.|.+.|||.+|.+--
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Ee  410 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEE  410 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHh
Confidence            379999999999999999999999999999999999999997543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=85.54  E-value=0.67  Score=38.73  Aligned_cols=34  Identities=21%  Similarity=0.422  Sum_probs=29.2

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CCcchhhccc
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCA   58 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l   58 (316)
                      .-++..||.+||..|+-.+.+||.   +.|..|-..+
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~I   82 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEI   82 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHH
Confidence            677899999999999999999999   8999998765

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=85.23  E-value=0.56  Score=46.38  Aligned_cols=45  Identities=11%  Similarity=0.257  Sum_probs=41.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLN   73 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n   73 (316)
                      .--+||.+|-+++..++...|. ++..|+..+| .|..+|++..|.+
T Consensus       364 ~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP-~R~RkqIKaKfi~  408 (507)
T COG5118         364 GALRWSKKEIEKFYKALSIWGT-DFSLISSLFP-NRERKQIKAKFIK  408 (507)
T ss_pred             CCCcccHHHHHHHHHHHHHhcc-hHHHHHHhcC-chhHHHHHHHHHH
Confidence            4468999999999999999998 9999999999 9999999998875

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=85.14  E-value=2.5  Score=29.43  Aligned_cols=42  Identities=29%  Similarity=0.381  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           86 PQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        86 ~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      ++++..++.++...|-.|.+||+.+ |.+...|+.+....+++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~~   53 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARKK   53 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHhh
Confidence            4677888888899999999999999 99999999987765543

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=84.12  E-value=0.46  Score=46.21  Aligned_cols=48  Identities=27%  Similarity=0.444  Sum_probs=38.0

Q ss_pred             cCCCCHHHHHHHHHHHHHh----CCC-----Ccchhhccc---CCccccccccchhcccc
Q 021188           28 RGPWTLEEDTLLTHYIHQH----GEG-----RWNMVAKCA---GLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~----g~~-----~W~~IA~~l---~~~Rt~~qcr~Rw~n~L   75 (316)
                      ...|+.+|-..|+++..+.    ..+     -|..||+.+   |..|++.||+.||.+..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3789999999999998653    222     499999844   45799999999997754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	316
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		9e-22
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-21
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		2e-21
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		3e-21
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		8e-21
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		6e-16
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		4e-13
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		4e-10
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		6e-08
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		2e-07
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		2e-06
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		3e-06
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		3e-06

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 74/107 (69%), Gaps = 3/107 (2%)
Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
           EL +GPWT EED  +  ++ ++G  RW+ +AK   LK R GK CR RW N+L P++K+ +
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 81
Query: 84  LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
            T +E  +I + H + GNRW++IA+ LPGRTDN +KN+W + ++++ 
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 72/106 (67%), Gaps = 1/106 (0%)
Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNL 84
           EL +GPWT EED  +   + ++G  RW+++AK     R GK CR RW N+L P++K+ + 
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSW 113
Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
           T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++ 
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score = 99.8 bits (247), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 72/107 (67%), Gaps = 3/107 (2%)
Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
           +L +GPWT EED  +   + ++G  +W ++AK   LK R GK CR RW N+L P++K+ +
Sbjct: 4   DLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSS 61
Query: 84  LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
            T +E  +I E H   GNRW++IA+ LPGRTDN +KN+W + ++++ 
Sbjct: 62  WTEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score = 99.0 bits (245), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 48/106 (45%), Positives = 74/106 (69%), Gaps = 3/106 (2%)
Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGN 83
           EL +GPWT EED  +   + ++G  RW+++AK   LK R GK CR RW N+L P++K+ +
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTS 58
Query: 84  LTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
            T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 59  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 47/105 (44%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 26  LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDIKRGNL 84
           L +GPWT EED  +   + ++G  RW+++AK   LK R GK CR RW N+L P++K+ + 
Sbjct: 2   LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score = 81.6 bits (200), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 1/102 (0%)
Query: 28  RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQ 87
           +GP+T  ED L+  Y+ ++G   W  +       R+ K CR RW N+L P + +   TP+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 88  EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           E   I   + K G++WS IA+ +PGRTDN IKN W + + K+
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 2/98 (2%)
Query: 27  RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTP 86
           ++  +T EED +L   + QHG   W M+A      R  + CR RW NYL P I     T 
Sbjct: 10  KKQKFTPEEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTA 67
Query: 87  QEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124
           +E  L+++   ++G +W+ IA+  PGRTD  IKN W T
Sbjct: 68  EEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 58/101 (57%), Gaps = 1/101 (0%)
Query: 32  TLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFL 91
           T EED  L   + ++G   W  +++   + R  + CR RW NY+ P ++    +P+E  L
Sbjct: 5   TEEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDML 63
Query: 92  ILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           + + ++++G +W+KI++ L  R+DN I+N W    + +A+ 
Sbjct: 64  LDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 39/53 (73%)
Query: 78  DIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQA 130
           ++K+ + T +E  ++ + H + GNRW++IA+ LPGRTDN IKN+W + ++++ 
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 38/51 (74%)
Query: 79  IKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           +K+ + T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 51

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
          L +GPWT EED  L   + ++G  RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
          L +GPWT EED  +   + ++G  RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPD 78
          L +GPWT EED  +   + ++G  RW+++AK   LK R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRVIELVQKYGPKRWSVIAK--HLKGRIGKQCRERWHNHLNPE 52

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-56
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	1e-55
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	5e-55
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-53
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	2e-50
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-49
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	4e-30
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-07
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	6e-24
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	8e-23
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	2e-04
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	3e-20
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	4e-18
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	2e-16
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	3e-16
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	6e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	2e-15
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	3e-15
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	3e-11
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	2e-09
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	4e-09
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	5e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	6e-09
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	7e-09
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	7e-08
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	6e-07
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	7e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	9e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	6e-04
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	4e-05
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	8e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-05
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-04

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  176 bits (450), Expect = 2e-56
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNL 84
           EL +GPWT EED  +   + ++G  RW+++AK     R GK CR RW N+L P++K+ + 
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 59

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 60  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  175 bits (447), Expect = 1e-55
 Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 3/131 (2%)

Query: 28  RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQ 87
           +GP+T  ED L+  Y+ ++G   W  +       R+ K CR RW N+L P + +   TP+
Sbjct: 2   KGPFTEAEDDLIREYVKENGPQNWPRITSFLPN-RSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 88  EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEAVR 147
           E   I   + K G++WS IA+ +PGRTDN IKN W + + K+    +          + +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDRSKK 120

Query: 148 CYW--MPRLLQ 156
                +P+ L+
Sbjct: 121 RKAADVPKKLE 131

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  174 bits (443), Expect = 5e-55
 Identities = 45/105 (42%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNL 84
           EL +GPWT EED  +  ++ ++G  RW+ +AK     R GK CR RW N+L P++K+ + 
Sbjct: 24  ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 82

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           T +E  +I + H + GNRW++IA+ LPGRTDN +KN+W + ++++
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  169 bits (430), Expect = 2e-53
 Identities = 30/105 (28%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 28  RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQ 87
           +  +T EED  L   + ++G   W  +++     R  + CR RW NY+ P ++    +P+
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPE 59

Query: 88  EQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           E  L+ + ++++G +W+KI++ L  R+DN I+N W    + +A+ 
Sbjct: 60  EDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  162 bits (412), Expect = 2e-50
 Identities = 39/117 (33%), Positives = 59/117 (50%), Gaps = 2/117 (1%)

Query: 20  EEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDI 79
           + + +  ++  +T EED +L   + QHG   W M+A      R  + CR RW NYL P I
Sbjct: 3   QVNLKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSI 60

Query: 80  KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIE 136
                T +E  L+++   ++G +W+ IA+  PGRTD  IKN W T   K       +
Sbjct: 61  SHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQ 117

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  160 bits (408), Expect = 2e-49
 Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 1/105 (0%)

Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNL 84
           EL +GPWT EED  +   + ++G  RW+++AK     R GK CR RW N+L P++K+ + 
Sbjct: 55  ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKTSW 113

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W + ++++
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  110 bits (278), Expect = 4e-30
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 2/91 (2%)

Query: 26  LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLT 85
           L +  WT EED  L   + Q+G   W ++A      RT   C+ RW   L P++ +G  T
Sbjct: 4   LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62

Query: 86  PQEQFLILELHSKWG-NRWSKIAQCLPGRTD 115
            +E   +++L  K+G  RWS IA+ L GR  
Sbjct: 63  KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIG 93

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 25  ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDI 79
           E+++  WT EED ++     + G  RW  +AK   L  RT  + +  W + ++  +
Sbjct: 107 EVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKL--LPGRTDNAIKNHWNSTMRRKV 159

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score = 91.0 bits (227), Expect = 6e-24
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
          L +GPWT EED  L   + ++G  RW+++AK     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPE 52

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 88.9 bits (221), Expect = 8e-23
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLT 85
           + G W   ED +L   + ++G+ +W+ +A     +++ K C+ RW  +L P IK+   +
Sbjct: 7  GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWS 65

Query: 86 PQEQ 89
              
Sbjct: 66 GPSS 69

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 77  PDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTD 115
              K G     E  ++     K+G N+WS+IA  L  ++ 
Sbjct: 5   SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSA 44

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 81.5 bits (202), Expect = 3e-20
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
          L +  WT EED  L   + Q+G   W ++A      RT   C+ RW   L P+
Sbjct: 1  LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 77.4 bits (190), Expect = 4e-18
 Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 9/101 (8%)

Query: 17  NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG---LKRTGKSCRLRWLN 73
           +   ED Q   R P+++ E   L   + + G GRW  V  CA      RT    + +W  
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61

Query: 74  YLK-----PDIKRGNLTPQEQFL-ILELHSKWGNRWSKIAQ 108
            +      P  +RG   PQE    +L  H  W  +  +  Q
Sbjct: 62  LVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 73.6 bits (180), Expect = 2e-16
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 17  NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRWLN 73
           +   +  Q   R P+T+ E  LL   +   G GRW  V   A      RT    + +W  
Sbjct: 20  SKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKT 79

Query: 74  YLK-----PDIKRGNLTPQEQFL-ILELHSKWGNRWSK 105
            +      P  +RG   PQE    +L   + W    S 
Sbjct: 80  LVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSSG 117

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK 80
            +  WT EED  L   + Q G+  W  +A      RT + C+ RWL  L     
Sbjct: 6  SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)

Query: 79  IKRGNLTPQEQFLILELHSKWGNR-WSKIAQCLPGRTD 115
             +   T +E   +  L  ++G + W  +A   P RTD
Sbjct: 6   SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTD 43

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 30  PWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRWLNYLK-----PDIKR 81
           P+++ E   L   +   G GRW  V   A      RT    + +W   +      P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 82  GNLTPQEQFL-ILELHSKWGNR 102
           G   PQ+    +L  H+ W  +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 10/98 (10%)

Query: 17  NSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK---RTGKSCRLRWLN 73
             SE  Q+ +RR P+++ E   L   +   G GRW  V   A      RT    + +W  
Sbjct: 7   KRSELSQRRIRR-PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKT 65

Query: 74  YLK-----PDIKRGNLTPQEQFL-ILELHSKWGNRWSK 105
            +      P  +RG   PQ+    +L  H+ W  +  K
Sbjct: 66  LVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLK 76
          +R  W  EED  L   + ++GEG W+ +        RT    + RW    K
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDI 79
          ++  WT+EE   +   + ++GEG W  ++K      RT    + RW    +  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75
              WT +E+  L   +   G G W  VA      +T + C   ++ Y 
Sbjct: 7  GDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYF 54

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 50.9 bits (122), Expect = 5e-09
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 1/62 (1%)

Query: 19 SEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKP 77
          + E  +  +R  W  EED  L   + ++GEG W+ +        RT    + RW    K 
Sbjct: 1  TPEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60

Query: 78 DI 79
           +
Sbjct: 61 KL 62

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 51.0 bits (122), Expect = 6e-09
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 22 DQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR 81
               ++  W+ EE+  L H        +W  +A   G  RT   C   +   L    +R
Sbjct: 3  SGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPIIG--RTAAQCLEHYEFLLDKAAQR 59

Query: 82 GN 83
           +
Sbjct: 60 DS 61

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 79  IKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWR 123
            K+   + +E+  +L L      +W  IA  + GRT  +   ++ 
Sbjct: 7   GKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYE 50

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 50.5 bits (121), Expect = 7e-09
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDI 79
          ++  WT+EE   +   + ++GEG W  ++K      RT    + RW    +  +
Sbjct: 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 14/49 (28%), Positives = 19/49 (38%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY 74
               W  +E+ LL       G G W  +A   G  RT + CR  +L  
Sbjct: 7  GFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKT 55

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 11 GTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEG---RWNMVAKCAGLKRTGKSC 67
          G+     S  +++      PWT  +  LL   + Q+  G    W+ +A+C    ++ + C
Sbjct: 1  GSSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDC 59

Query: 68 RLRWLNYLKPDIKRG 82
            R+   L      G
Sbjct: 60 IARY-KLLVSGPSSG 73

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 68  RLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ 127
                +  + ++     T +E     +   + G  WS IA+ +  +T ++ KN++     
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFY----F 58

Query: 128 KQARQLNIE 136
              ++ N++
Sbjct: 59  NYKKRQNLD 67

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 44.9 bits (106), Expect = 9e-07
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 11 GTKRECNSSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLR 70
          G+     +  + +       WT +E  LL   +  +    WN V++  G  RT   C L 
Sbjct: 1  GSSGSSGTLAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILH 58

Query: 71 WLNY 74
          +L  
Sbjct: 59 FLRL 62

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 37.2 bits (86), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 22/38 (57%)

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYW 122
           T QE  L+LE    + + W+K+++ +  RT +E   ++
Sbjct: 22  TEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHF 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 40.3 bits (94), Expect = 4e-05
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           G +T EE   L     +HG   W  +    G  R+  S + R    +K     G
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAALG--RSASSVKDRC-RLMKDTCNTG 73

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 36.5 bits (84), Expect = 8e-04
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 62  RTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNY 121
               S     L +       G  TP+E   + EL  K GN W+ I   L GR+ + +K+ 
Sbjct: 4   HHHHSSGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDR 62

Query: 122 WRT 124
            R 
Sbjct: 63  CRL 65

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 14/57 (24%), Positives = 29/57 (50%)

Query: 76  KPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
                    T +E+ L  +  +K+G RW+KI++ +  RT  ++K+Y R   + + + 
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGR-----WNMVAKCAGLK-RTGKSCRLRWLNYLKPDIK 80
           +  +T EED  +   + ++   R     ++ ++    +   TG S R R+  YL   ++
Sbjct: 7  NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH--YVPNHTGNSIRHRFRVYLSKRLE 64

Query: 81 RGNLTPQEQFLILELHSKW 99
                +   L+ +     
Sbjct: 65 YVYEVDKFGKLVRDDDGNL 83

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.98
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.98
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.87
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.85
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.76
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.72
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.71
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.7
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.7
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.69
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.69
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.68
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.67
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.66
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.66
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.62
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.62
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.6
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.6
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.59
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.58
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.57
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.57
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.57
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.56
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.55
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.54
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.54
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.52
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.52
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.51
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.5
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.5
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.49
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.48
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.46
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.45
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.45
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.17
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.41
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.36
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.35
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.04
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.34
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.32
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.31
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.31
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.28
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.23
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.21
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.17
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.04
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.93
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.92
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.88
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.77
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.77
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.7
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.61
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.49
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.48
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.47
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.42
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.37
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.37
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.08
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.07
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.05
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.04
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	97.98
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.1
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.85
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	97.82
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.6
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.58
2crg_A	70	Metastasis associated protein MTA3; transcription	97.53
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.53
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.21
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.19
2crg_A	70	Metastasis associated protein MTA3; transcription	97.18
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.13
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.01
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	96.96
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.45
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	95.44
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.27
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	95.23
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	92.57
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.87
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	90.07
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	89.11
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	86.65

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=1.1e-35  Score=248.56  Aligned_cols=125  Identities=39%  Similarity=0.764  Sum_probs=102.4

Q ss_pred             hhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188            4 MRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR   81 (316)
Q Consensus         4 ~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk   81 (316)
                      |++.+++++..+|..+|..  .|++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhccccccc
Confidence            5678899999999999975  6899999999999999999999999888999999998 999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      ++||+|||++|++++.+||++|..||+.|||||+++|++||+.++++.
T Consensus        80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             ccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999988764

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=4.3e-34  Score=230.87  Aligned_cols=104  Identities=44%  Similarity=0.883  Sum_probs=99.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChh
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWS  104 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~  104 (316)
                      ++++|+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~   79 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA   79 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence            48999999999999999999999888999999998 99999999999999999999999999999999999999999999


Q ss_pred             hhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188          105 KIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus       105 ~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      .||+.|||||+++|++||+.++++.
T Consensus        80 ~Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           80 EIAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999988765

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=9.6e-34  Score=230.07  Aligned_cols=104  Identities=29%  Similarity=0.631  Sum_probs=100.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhh
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIA  107 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA  107 (316)
                      ||+||+|||++|+++|.+||.++|..||..|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|..||
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia   79 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS   79 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence            68999999999999999999889999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188          108 QCLPGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus       108 ~~lpgRT~~q~knRW~~~l~k~~r~  132 (316)
                      +.|||||+++|++||+.++++..++
T Consensus        80 ~~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           80 KFLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HHCCCCCHHHHHHHHHHHHhhHHHh
Confidence            9999999999999999999887654

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.98  E-value=2.7e-33  Score=235.08  Aligned_cols=107  Identities=36%  Similarity=0.714  Sum_probs=102.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhh
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIA  107 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA  107 (316)
                      ||+||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            79999999999999999999889999999998 99999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188          108 QCLPGRTDNEIKNYWRTRVQKQARQLNI  135 (316)
Q Consensus       108 ~~lpgRT~~q~knRW~~~l~k~~r~~~~  135 (316)
                      +.|||||+++|++||+.++++.+.....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~~  108 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNSN  108 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence            9999999999999999999887665543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.98  E-value=7.6e-33  Score=231.04  Aligned_cols=104  Identities=38%  Similarity=0.710  Sum_probs=100.1

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCC
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR  102 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~  102 (316)
                      .+..++|+||+|||++|+++|.+||. +|..||+.|+ +|++.|||+||.++|+|.+++++||+|||++|+++|.+||.+
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~   83 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ   83 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence            36789999999999999999999998 9999999998 999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188          103 WSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus       103 W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      |..||+.|||||+++|++||..++++
T Consensus        84 W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           84 WAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             HHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999988865

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=4.4e-33  Score=240.70  Aligned_cols=126  Identities=38%  Similarity=0.753  Sum_probs=109.0

Q ss_pred             hhhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188            3 TMRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus         3 ~~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      +|+..+++++.++|..+|..  .|.+++|+||+|||++|+++|.+||..+|..||+.|+ +|++.||++||.++|+|.++
T Consensus        31 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~  109 (159)
T 1h89_C           31 VIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVK  109 (159)
T ss_dssp             ------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCcccc
Confidence            46777889999999999866  6889999999999999999999999878999999998 99999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      +++||+|||.+|++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             ccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999988754

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=5.5e-32  Score=233.79  Aligned_cols=125  Identities=27%  Similarity=0.586  Sum_probs=77.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCC-Ch
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGN-RW  103 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W  103 (316)
                      .+++++||+|||++|+++|.+||.++|..||+.|+ +|++.||++||.++|+|.+++++||+|||.+|+++|.+||. +|
T Consensus         3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W   81 (159)
T 1h89_C            3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW   81 (159)
T ss_dssp             -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence            47899999999999999999999889999999998 99999999999999999999999999999999999999995 79


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHhhhc
Q 021188          104 SKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFF-EAVRCYW  150 (316)
Q Consensus       104 ~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~-~~i~~~~  150 (316)
                      ..||..|||||+.||++||.++|.+.+++..++.+|+.++ ..+..|.
T Consensus        82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g  129 (159)
T 1h89_C           82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG  129 (159)
T ss_dssp             HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999888844 4444443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.87  E-value=4.2e-23  Score=172.17  Aligned_cols=96  Identities=24%  Similarity=0.536  Sum_probs=67.9

Q ss_pred             hhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHh
Q 021188           54 VAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus        54 IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~  132 (316)
                      ||+.|+ +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|.+.+++
T Consensus         1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~   79 (128)
T 1h8a_C            1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK   79 (128)
T ss_dssp             ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred             CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhccccccc
Confidence            788998 99999999999999999999999999999999999999995 7999999999999999999999999999999


Q ss_pred             cCCCCCchHHH-HHHhhhc
Q 021188          133 LNIESNSETFF-EAVRCYW  150 (316)
Q Consensus       133 ~~~~~~e~~~~-~~i~~~~  150 (316)
                      +.++.+|+.++ ..+..|.
T Consensus        80 ~~WT~eEd~~L~~~~~~~G   98 (128)
T 1h8a_C           80 TSWTEEEDRIIYQAHKRLG   98 (128)
T ss_dssp             SCCCHHHHHHHHHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHHC
Confidence            99999988844 4444443

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=1.4e-22  Score=152.30  Aligned_cols=65  Identities=25%  Similarity=0.619  Sum_probs=63.3

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHHH
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQ   89 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED   89 (316)
                      +.+++|+||+|||++|+++|.+||.++|..||+.|+ +|+++|||+||.++|+|.+++++||+|||
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            789999999999999999999999779999999999 99999999999999999999999999997

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.76  E-value=5.7e-19  Score=160.23  Aligned_cols=105  Identities=18%  Similarity=0.346  Sum_probs=91.8

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCC-----cchhhcccCCccccccccchhccccCCCCc------------------
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGR-----WNMVAKCAGLKRTGKSCRLRWLNYLKPDIK------------------   80 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~-----W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk------------------   80 (316)
                      +.+++++||+|||++|+++|+++|..+     |.+||+.|+ |||+.|||.||..+|.+.+.                  
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn   82 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGN   82 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCC
Confidence            568999999999999999999998743     999999999 99999999999999999886                  


Q ss_pred             -----------cCCCCHHHHHHHHHHHHh-c-------------------------------------------------
Q 021188           81 -----------RGNLTPQEQFLILELHSK-W-------------------------------------------------   99 (316)
Q Consensus        81 -----------kg~WT~EED~~Ll~lv~~-~-------------------------------------------------   99 (316)
                                 +..||.|||-.|+..+.+ |                                                 
T Consensus        83 ~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~  162 (246)
T 1ign_A           83 LIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRT  162 (246)
T ss_dssp             BCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CC
T ss_pred             ceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhcc
Confidence                       789999999999998876 1                                                 


Q ss_pred             ----CC----ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188          100 ----GN----RWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus       100 ----G~----~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                          |.    .|..||+.+|+||.+++|+||+..++..
T Consensus       163 ~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          163 QSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             ccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence                11    5999999999999999999999888654

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.72  E-value=9.3e-19  Score=144.63  Aligned_cols=82  Identities=26%  Similarity=0.447  Sum_probs=77.5

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhccccC-----CCCccC-CCCHHHHHHH
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYLK-----PDIKRG-NLTPQEQFLI   92 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L~-----p~lkkg-~WT~EED~~L   92 (316)
                      .+..++++||+|||+.|+++|++||.++|..|++.+    + +||+.+|++||+++|+     |.++++ +|++||+.+|
T Consensus        12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            367899999999999999999999999999999985    5 8999999999999998     999999 9999999999


Q ss_pred             HHHHHhcCCChhh
Q 021188           93 LELHSKWGNRWSK  105 (316)
Q Consensus        93 l~lv~~~G~~W~~  105 (316)
                      ++++..+|++|.+
T Consensus        91 ~~~h~~~gn~~~~  103 (121)
T 2juh_A           91 LAAHAYWSQQQGK  103 (121)
T ss_dssp             HHHHHHHHHHHCC
T ss_pred             HHHHHHHccchhc
Confidence            9999999999977

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=3.7e-18  Score=124.33  Aligned_cols=56  Identities=30%  Similarity=0.577  Sum_probs=53.7

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      |.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus         4 p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            4 GSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence            789999999999999999999999779999999998 99999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.70  E-value=4.5e-18  Score=120.44  Aligned_cols=52  Identities=46%  Similarity=0.910  Sum_probs=49.8

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD   78 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~   78 (316)
                      |++|+||+|||++|+++|.+||.++|..||+.|+ +||+.|||+||.++|+|+
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            6899999999999999999999878999999998 999999999999999984

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.70  E-value=9.2e-18  Score=127.28  Aligned_cols=58  Identities=29%  Similarity=0.422  Sum_probs=46.8

Q ss_pred             ccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           67 CRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        67 cr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      .--||.++|+|++++++||+|||++|++++++||++|+.||+.| |||+++||+||+.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L   66 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLM   66 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHH
Confidence            34589999999999999999999999999999999999999999 99999999999864

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.69  E-value=7.9e-18  Score=139.24  Aligned_cols=79  Identities=30%  Similarity=0.475  Sum_probs=73.5

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhcccc-----CCCCccCCCCHHH-HHHH
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYL-----KPDIKRGNLTPQE-QFLI   92 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L-----~p~lkkg~WT~EE-D~~L   92 (316)
                      ....++++||.|||+.|+++|++||.|+|..|++.+    + +||+.||++||++++     +|.++++.|+++| +++|
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v  104 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRV  104 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHH
Confidence            366889999999999999999999999999999974    5 899999999999999     8999999999999 8999


Q ss_pred             HHHHHhcCCC
Q 021188           93 LELHSKWGNR  102 (316)
Q Consensus        93 l~lv~~~G~~  102 (316)
                      ++++..||++
T Consensus       105 ~~~h~~~g~~  114 (122)
T 2roh_A          105 LAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHhhH
Confidence            9999999974

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.69  E-value=5.9e-18  Score=119.75  Aligned_cols=52  Identities=35%  Similarity=0.742  Sum_probs=48.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD   78 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~   78 (316)
                      +++|+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence            5899999999999999999999889999999998 999999999999999984

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.68  E-value=5.2e-17  Score=120.47  Aligned_cols=61  Identities=20%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             ccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188           74 YLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNI  135 (316)
Q Consensus        74 ~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~  135 (316)
                      +|+|.+++++||+|||++|++++++||.+|..||+ ++|||++|||+||+.++++.+++..-
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~~   62 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDSG   62 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCCC
Confidence            79999999999999999999999999999999999 88999999999999999999887643

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.67  E-value=6.1e-17  Score=122.20  Aligned_cols=64  Identities=22%  Similarity=0.331  Sum_probs=59.0

Q ss_pred             cCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCc
Q 021188           75 LKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNS  139 (316)
Q Consensus        75 L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e  139 (316)
                      ++|.+++++||+|||++|+++|.+||.+|..||+.|+|||++|||+||+.++++..+. ++++.+
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~~   66 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKET   66 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCCC
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCCc
Confidence            5789999999999999999999999999999999999999999999999999998777 665544

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.66  E-value=3e-17  Score=122.86  Aligned_cols=62  Identities=24%  Similarity=0.418  Sum_probs=57.7

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCC-ccccccccchhccccCCCCccCCCC
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL-KRTGKSCRLRWLNYLKPDIKRGNLT   85 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~n~L~p~lkkg~WT   85 (316)
                      +..++++||+|||++|+++|.+||.++|..||+.|++ +||+.||++||.++|+|.+.++..+
T Consensus         6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            6 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            6789999999999999999999998899999999976 8999999999999999999987653

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=3.2e-17  Score=123.00  Aligned_cols=65  Identities=22%  Similarity=0.348  Sum_probs=61.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCch
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSE  140 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~  140 (316)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++++.++.+|+
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            4678999999999999999999999 7999999999999999999999999999999999988875

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.62  E-value=9.6e-17  Score=118.73  Aligned_cols=56  Identities=23%  Similarity=0.486  Sum_probs=49.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC-CccccccccchhccccCCCCc
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG-LKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~-~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      ..+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||++++++.++
T Consensus         8 ~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            8 ITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            35889999999999999999999889999999864 289999999999999998764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.62  E-value=1.3e-16  Score=116.39  Aligned_cols=54  Identities=22%  Similarity=0.451  Sum_probs=51.2

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD   78 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~   78 (316)
                      +.+++++||+|||++|+++|.+||.++|.+||+.|+ +||+.|||+||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence            679999999999999999999999779999999999 999999999999999864

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.60  E-value=1.2e-16  Score=133.65  Aligned_cols=102  Identities=16%  Similarity=0.291  Sum_probs=78.5

Q ss_pred             hhhhhhhhcCccccCCChhh--hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCc
Q 021188            3 TMRAARAAGTKRECNSSEED--QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus         3 ~~~~~~~~~~k~~~~~~~~~--~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      +|+..+++++.++|..+|..  .|.+++|+||+|||++|+++|.+||. +|..||+.|+ |||+.||+.||.++|++.+.
T Consensus        27 ~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~  104 (131)
T 3zqc_A           27 RITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGS-KWSVIAKLIP-GRTDNAIKNRWNSSISKRIS  104 (131)
T ss_dssp             GGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCS-CHHHHTTTST-TCCHHHHHHHHHHTTGGGCC
T ss_pred             HHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHhh
Confidence            47778889999999999865  68999999999999999999999997 9999999998 99999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcC
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCL  110 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~l  110 (316)
                      .+.|+.+--.    .....+.+|..|++.|
T Consensus       105 ~~~~~~~~~~----p~~~kk~~~~~i~k~~  130 (131)
T 3zqc_A          105 TNSNHKEILL----PDRSKKRKAADVPKKL  130 (131)
T ss_dssp             CCTTSCCCCC----CCCC------------
T ss_pred             cCCCcccccC----chhhhhhhhhhcchhc
Confidence            9998876311    0122235688888765

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.60  E-value=5.5e-16  Score=112.76  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=50.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      +|.+++++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++.
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~   57 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP   57 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence            5788999999999999999999999 69999999999999999999999988654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.59  E-value=7.7e-16  Score=108.77  Aligned_cols=50  Identities=26%  Similarity=0.478  Sum_probs=46.0

Q ss_pred             CccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           79 IKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      +++++||+|||++|+++|.+||. +|..||+.|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999997 999999999999999999999998864

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.58  E-value=1.4e-15  Score=113.80  Aligned_cols=62  Identities=24%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             ccCCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHHHHhcCC
Q 021188           74 YLKPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQKQARQLNI  135 (316)
Q Consensus        74 ~L~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k~~r~~~~  135 (316)
                      ..++..++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++|++.+.+...
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~   67 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDS   67 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence            345677899999999999999999999 69999999999  999999999999999987766543

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.57  E-value=1.2e-15  Score=107.87  Aligned_cols=50  Identities=30%  Similarity=0.633  Sum_probs=46.6

Q ss_pred             CccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           79 IKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999996 799999999999999999999998753

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.7e-16  Score=117.69  Aligned_cols=56  Identities=21%  Similarity=0.363  Sum_probs=52.4

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccC
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG   82 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg   82 (316)
                      |.+++++||+|||++|+++|+++|. +|.+||+ ++ +||+.|||+||.++|+|.++++
T Consensus         5 P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~   60 (66)
T 2din_A            5 SSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRD   60 (66)
T ss_dssp             SSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCC
Confidence            8899999999999999999999998 9999999 76 7999999999999999877654

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.57  E-value=6e-16  Score=109.96  Aligned_cols=50  Identities=30%  Similarity=0.528  Sum_probs=46.9

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCC-ccccccccchhccccC
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL-KRTGKSCRLRWLNYLK   76 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~n~L~   76 (316)
                      ++|+||+|||++|+++|.+||.++|..||+.+++ +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            5899999999999999999998899999999976 6999999999999875

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.56  E-value=9.1e-16  Score=111.17  Aligned_cols=52  Identities=27%  Similarity=0.457  Sum_probs=47.9

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      ..+.+++||+|||++|+++|++||.++|.+||+.|+.+||+.|||+||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            3477899999999999999999998799999999987899999999999875

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=5.5e-16  Score=117.68  Aligned_cols=60  Identities=25%  Similarity=0.349  Sum_probs=55.3

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCC-----CCcchhhcccCCccccccccchhccccCCCCccCC
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGE-----GRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGN   83 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~-----~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~   83 (316)
                      .|.+++++||+|||++|+++|.+||.     ++|.+||+.|+ +||+.||+.||.++|.+.++.|.
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence            47899999999999999999999995     58999999999 99999999999999998777664

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.54  E-value=5.6e-15  Score=104.91  Aligned_cols=49  Identities=31%  Similarity=0.375  Sum_probs=46.1

Q ss_pred             ccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k  128 (316)
                      ++++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||.++++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~   52 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL   52 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            478999999999999999999 69999999999  99999999999998863

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.54  E-value=4.9e-15  Score=107.95  Aligned_cols=52  Identities=19%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      .+.+.+++||+|||++|+++|.+|| ++|.+||++|+|||+.||++||.+++.
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            3578899999999999999999999 799999999999999999999998764

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.52  E-value=1.4e-15  Score=114.74  Aligned_cols=56  Identities=27%  Similarity=0.435  Sum_probs=52.9

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR   81 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk   81 (316)
                      |.+++++||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|.+.++.
T Consensus         5 p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            5 SSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence            7899999999999999999999998 9999999999 999999999999999876655

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.52  E-value=5.5e-15  Score=122.80  Aligned_cols=75  Identities=16%  Similarity=0.404  Sum_probs=67.0

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHhhhc
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET-FFEAVRCYW  150 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~-~~~~i~~~~  150 (316)
                      .+..++++||+|||++|+++|.+||.+|..||..|+||++.||+.||.++|.+.++++.++.+|+. +++.+..|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G   81 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYG   81 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHC
Confidence            456789999999999999999999999999999999999999999999999999999999999887 555555543

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=6.7e-15  Score=111.63  Aligned_cols=58  Identities=24%  Similarity=0.228  Sum_probs=53.6

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcC------CChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWG------NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQL  133 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G------~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~  133 (316)
                      +|.+++++||+|||++|+++|.+||      ++|..||++|+|||+.||++||+.+|.+.++.+
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      689999999999999999999999998876654

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.50  E-value=7e-15  Score=118.06  Aligned_cols=73  Identities=22%  Similarity=0.485  Sum_probs=64.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHhhhc
Q 021188           78 DIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFF-EAVRCYW  150 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~-~~i~~~~  150 (316)
                      ++++++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.++.+|+..+ ..+..|.
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G   75 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLG   75 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhC
Confidence            468999999999999999999996 799999999999999999999999999999999999988844 4444443

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.50  E-value=2.1e-14  Score=106.13  Aligned_cols=51  Identities=29%  Similarity=0.457  Sum_probs=46.0

Q ss_pred             CccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHHHHHH
Q 021188           79 IKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP--GRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp--gRT~~q~knRW~~~l~k~  129 (316)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||++++++.
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g   62 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   62 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence            4788999999999999999999 59999999865  999999999999988753

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.49  E-value=2.4e-14  Score=103.65  Aligned_cols=50  Identities=20%  Similarity=0.381  Sum_probs=46.2

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCC-CCCHHHHHHHHHHHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLP-GRTDNEIKNYWRTRV  126 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lp-gRT~~q~knRW~~~l  126 (316)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||+.||.+++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999 89999999999 999999999998764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.48  E-value=1.8e-14  Score=116.28  Aligned_cols=78  Identities=31%  Similarity=0.593  Sum_probs=69.0

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhccc----CCccccccccchhcccc-----CCCCccCCCCHHHHHH-H
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCA----GLKRTGKSCRLRWLNYL-----KPDIKRGNLTPQEQFL-I   92 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~n~L-----~p~lkkg~WT~EED~~-L   92 (316)
                      .+..++++||+|||+.|+++|++||.++|..|++.+    + +||..+|++||++++     +|.++++.-+++|-.. +
T Consensus         8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            467899999999999999999999999999999976    5 899999999999998     6899999888888665 8


Q ss_pred             HHHHHhcCC
Q 021188           93 LELHSKWGN  101 (316)
Q Consensus        93 l~lv~~~G~  101 (316)
                      ++++..+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877663

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.46  E-value=3.1e-14  Score=110.40  Aligned_cols=69  Identities=25%  Similarity=0.425  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcc----cCCccccccccchhcccc-----CCCCccC-CCCHHHHHHHHHHHHh
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKC----AGLKRTGKSCRLRWLNYL-----KPDIKRG-NLTPQEQFLILELHSK   98 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~----l~~~Rt~~qcr~Rw~n~L-----~p~lkkg-~WT~EED~~Ll~lv~~   98 (316)
                      ++||+|||++|+++|++||.|+|..|++.    ++ +||+.+|++||+++|     +|.++++ +...+..++++.++..
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999999999995    77 999999999999988     5766655 6777777889888764

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.45  E-value=3.1e-14  Score=114.95  Aligned_cols=70  Identities=16%  Similarity=0.330  Sum_probs=62.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchH-HHHHHhhhc
Q 021188           81 RGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSET-FFEAVRCYW  150 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~-~~~~i~~~~  150 (316)
                      +++||+|||++|+++|.+||. +|..||..|+|||+.||+.||.++|.+.++++.++.+|+. ++..+..|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G   72 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYG   72 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhC
Confidence            579999999999999999995 8999999999999999999999999999999999999888 445554443

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.45  E-value=2.9e-14  Score=107.98  Aligned_cols=54  Identities=22%  Similarity=0.321  Sum_probs=48.4

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCcc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKR   81 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkk   81 (316)
                      |++++|+||+|||++|+++|.+||. +|..||+.|  +||+.||+.||. .|....+.
T Consensus        19 P~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~~l--gRt~~q~knRw~-~L~~~~~~   72 (73)
T 2llk_A           19 DRNHVGKYTPEEIEKLKELRIKHGN-DWATIGAAL--GRSASSVKDRCR-LMKDTCNT   72 (73)
T ss_dssp             CCCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHHHH--TSCHHHHHHHHH-HCSCCCSC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHh--CCCHHHHHHHHH-HHHHHccC
Confidence            8999999999999999999999998 799999999  699999999997 45554443

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.17  E-value=6.8e-15  Score=115.50  Aligned_cols=57  Identities=19%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             cccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           73 NYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        73 n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      ..+.|.+++++||+|||++|+++|.+||.+|..||..|+|||++||++||+.++++.
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~   64 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ   64 (89)
Confidence            356788999999999999999999999999999999999999999999999988764

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=106.35  Aligned_cols=49  Identities=29%  Similarity=0.488  Sum_probs=46.5

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      ....+++||+|||++|+++|++|| ++|.+||++|+ +||+.||+.||.++
T Consensus        14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~   62 (79)
T 2yus_A           14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL   62 (79)
T ss_dssp             SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred             ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            457899999999999999999999 69999999999 99999999999988

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.36  E-value=3.4e-13  Score=111.30  Aligned_cols=77  Identities=23%  Similarity=0.328  Sum_probs=58.9

Q ss_pred             cCCCCccCCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHH-----HHHHhcCCCCC-chHHH
Q 021188           75 LKPDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQ-----KQARQLNIESN-SETFF  143 (316)
Q Consensus        75 L~p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~-----k~~r~~~~~~~-e~~~~  143 (316)
                      +.+..++++||.|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++     +.++++...++ +...+
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv   90 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV   90 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence            456778999999999999999999996 99999997    489999999999999998     44445312222 22344


Q ss_pred             HHHhhhcC
Q 021188          144 EAVRCYWM  151 (316)
Q Consensus       144 ~~i~~~~~  151 (316)
                      ..++.+|-
T Consensus        91 ~~~h~~~g   98 (121)
T 2juh_A           91 LAAHAYWS   98 (121)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHc
Confidence            45555443

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.35  E-value=5.6e-13  Score=100.91  Aligned_cols=51  Identities=20%  Similarity=0.388  Sum_probs=47.0

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      +...+++||.|||.+|++++.+||    ++|.+||++|||||.++|++||+.+++
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            456788999999999999999999    589999999999999999999998764

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.04  E-value=7.1e-14  Score=109.69  Aligned_cols=53  Identities=28%  Similarity=0.530  Sum_probs=50.3

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCC
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP   77 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p   77 (316)
                      .|.+++|+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.++|..
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~-gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVG-SKTVSQCKNFYFNYKKR   63 (89)
Confidence            48899999999999999999999998 8999999999 99999999999998864

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.34  E-value=1.7e-12  Score=104.79  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=58.5

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcCC-ChhhhhhcC----CCCCHHHHHHHHHHHHH-----HHHHhcCCCCCchHH-HHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQCL----PGRTDNEIKNYWRTRVQ-----KQARQLNIESNSETF-FEA  145 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~l----pgRT~~q~knRW~~~l~-----k~~r~~~~~~~e~~~-~~~  145 (316)
                      +..++++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++     +..+++...|.+--. +..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~   88 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLN   88 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHH
Confidence            4567899999999999999999996 999999865    89999999999999996     555555444444332 344


Q ss_pred             HhhhcC
Q 021188          146 VRCYWM  151 (316)
Q Consensus       146 i~~~~~  151 (316)
                      +..||-
T Consensus        89 ~~~~~~   94 (105)
T 2aje_A           89 AHGYWT   94 (105)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.32  E-value=8.4e-13  Score=101.43  Aligned_cols=48  Identities=23%  Similarity=0.342  Sum_probs=44.9

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           78 DIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      ...+++||+|||++|+++|.+||++|.+||++|++||+.||+.||..+
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            446889999999999999999999999999999999999999999764

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.31  E-value=3e-13  Score=102.44  Aligned_cols=54  Identities=20%  Similarity=0.521  Sum_probs=48.9

Q ss_pred             hhcCCccCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188           22 DQQELRRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        22 ~~~~lkkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      +.+...+++||++||++|+++|.+||.   .+|.+||+.|| |||..||+.||.+++.
T Consensus        12 ~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           12 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHS
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            347789999999999999999999993   38999999999 9999999999998765

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.31  E-value=2.1e-12  Score=100.04  Aligned_cols=49  Identities=22%  Similarity=0.396  Sum_probs=45.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQKQA  130 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~k~~  130 (316)
                      ++||+|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++...
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~   54 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence            48999999999999999996 99999995    899999999999999997543

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.28  E-value=2.2e-12  Score=106.65  Aligned_cols=74  Identities=26%  Similarity=0.370  Sum_probs=57.0

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHHHH-----HHHHhcCCCCCc-hHHHHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWGN-RWSKIAQC----LPGRTDNEIKNYWRTRVQ-----KQARQLNIESNS-ETFFEA  145 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G~-~W~~IA~~----lpgRT~~q~knRW~~~l~-----k~~r~~~~~~~e-~~~~~~  145 (316)
                      ...++++||.|||+.|+++|++||. +|+.|++.    |+|||+.+||+||+++++     +.++++.+.+++ ...+..
T Consensus        27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~  106 (122)
T 2roh_A           27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLA  106 (122)
T ss_dssp             CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHH
Confidence            3457889999999999999999995 99999986    489999999999999996     444555444444 233444


Q ss_pred             Hhhhc
Q 021188          146 VRCYW  150 (316)
Q Consensus       146 i~~~~  150 (316)
                      ++.+|
T Consensus       107 ~h~~~  111 (122)
T 2roh_A          107 AQAYW  111 (122)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.23  E-value=1.1e-11  Score=90.45  Aligned_cols=49  Identities=18%  Similarity=0.344  Sum_probs=45.4

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhh---hcCCCCCHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIA---QCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA---~~lpgRT~~q~knRW~~~l~k  128 (316)
                      ++.+||+|||+.|+++|++||.+|..|+   ..+++||..++|+||+++.++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence            6789999999999999999999999999   567999999999999998764

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.21  E-value=2.9e-12  Score=116.36  Aligned_cols=55  Identities=25%  Similarity=0.483  Sum_probs=48.7

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWGNR------WSKIAQCLPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      +.+++++||+|||++|+++|.++|++      |..||+.|||||+++||+||+.+|++.+.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35688999999999999999999975      99999999999999999999999999875

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.17  E-value=3.7e-11  Score=94.92  Aligned_cols=50  Identities=20%  Similarity=0.391  Sum_probs=45.5

Q ss_pred             ccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      .+++||.|||++|++++.+||    ++|.+||+.|||||.++|++||+.+++..
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv   60 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDI   60 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            467999999999999999996    57999999999999999999999988664

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.04  E-value=4e-11  Score=94.73  Aligned_cols=48  Identities=19%  Similarity=0.392  Sum_probs=43.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhC---CCCcchhhcccCCccccccccchhcccc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHG---EGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g---~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      .+++||+|||++|++++.+||   ..+|.+||+.|| |||..||+.||.+++
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV   57 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            468999999999999999997   347999999999 999999999998864

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.93  E-value=1.5e-09  Score=85.54  Aligned_cols=67  Identities=16%  Similarity=0.178  Sum_probs=60.3

Q ss_pred             cccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcC-----CCCCHHHHHHHHHHHHHHHHHhcC
Q 021188           64 GKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCL-----PGRTDNEIKNYWRTRVQKQARQLN  134 (316)
Q Consensus        64 ~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~l-----pgRT~~q~knRW~~~l~k~~r~~~  134 (316)
                      ..=+.++|.++|.+    .+||.||+..|++|+++||.+|..|+..+     ++||..++|+||..+.++.++..+
T Consensus        17 ~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~   88 (93)
T 3hm5_A           17 PVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA   88 (93)
T ss_dssp             CCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            35578899999976    89999999999999999999999999998     589999999999999988877653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.5e-09  Score=79.10  Aligned_cols=47  Identities=13%  Similarity=0.087  Sum_probs=43.4

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      ..++||+||++++++++.+||.+|..||..||+||..+|..+|....
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999999999999997643

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.88  E-value=6.1e-10  Score=81.22  Aligned_cols=50  Identities=20%  Similarity=0.294  Sum_probs=44.9

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhh---cccCCccccccccchhccccCC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVA---KCAGLKRTGKSCRLRWLNYLKP   77 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA---~~l~~~Rt~~qcr~Rw~n~L~p   77 (316)
                      -++.+||+|||+.|+++|++||. +|..|+   ..+. +||...+++||++..+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~   58 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQK-GRRAVDLAHKYHRLISG   58 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence            47899999999999999999998 999999   4665 99999999999987653

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=2.5e-09  Score=77.91  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=44.7

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      ..-..++||+||++++.+++.+||. +|..||+.|+ +||..||+.+|....
T Consensus         8 ~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~~l~-~rt~~~~v~~Yy~~K   57 (61)
T 2eqr_A            8 DRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIASYLE-RKSVPDCVLYYYLTK   57 (61)
T ss_dssp             CCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence            3456799999999999999999996 9999999999 999999999996543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.77  E-value=3.6e-09  Score=79.74  Aligned_cols=50  Identities=20%  Similarity=0.274  Sum_probs=44.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           78 DIKRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      ..+.+.||.|||.+|.+++.+|+    ++|.+||..+ |||..+|+.||+.+.+.
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d   58 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   58 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence            34578999999999999999997    4799999998 99999999999987654

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.70  E-value=9e-09  Score=92.77  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      ..++||+||++++++++.+||++|..||+.+++||..|||++|..+.+
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999999999999999999999999987664

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.61  E-value=8.5e-09  Score=77.66  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=43.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      ..+++.||.|||++|.+++.+|+.   ++|.+||+.+  +||..+|+.||..+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            456789999999999999999984   4799999997  4999999999987654

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.49  E-value=4.9e-08  Score=96.98  Aligned_cols=43  Identities=21%  Similarity=0.457  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT  124 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~  124 (316)
                      ..||+||-+++++++.+||.+|..||+.++.||..|||++|..
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~  423 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN  423 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHH
Confidence            4799999999999999999999999999999999999999864

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.48  E-value=3.2e-08  Score=71.66  Aligned_cols=48  Identities=23%  Similarity=0.457  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcchhhc-ccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQH--------GEGRWNMVAK-CAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~--------g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      |.+||+|||+.|++.|.++        |+.-|.++++ .++ ++|-.+||+||.++|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence            6789999999999999999        4445999999 787 9999999999998875

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.47  E-value=4.8e-08  Score=73.63  Aligned_cols=48  Identities=21%  Similarity=0.435  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCcchhhcccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGE---GRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      ...||.+|+++|.+++..|+.   ++|.+||..+| +||..+|+.||..++.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPR   58 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            468999999999999999975   47999999999 9999999999987754

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.42  E-value=1.3e-07  Score=71.22  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=42.2

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      ...||.+|+++|.+++..|+.    +|.+||..++|||..+|+.||..++
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~   57 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            468999999999999999984    6999999999999999999998764

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.37  E-value=1.1e-07  Score=85.70  Aligned_cols=49  Identities=20%  Similarity=0.399  Sum_probs=45.5

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      ...++||.||++++++++.+||. +|..||+.|+ +||..||+.+|.++.+
T Consensus       131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~Vg-TKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            45789999999999999999997 9999999999 9999999999988764

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.37  E-value=2.2e-07  Score=67.29  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=41.7

Q ss_pred             cCCCCHHHHHHHHHHHHhc--------CC-Chhhhhh-cCCCCCHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKW--------GN-RWSKIAQ-CLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~--------G~-~W~~IA~-~lpgRT~~q~knRW~~~l~  127 (316)
                      +.+||+|||..|+++|.+|        |+ -|..+++ .+|++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        43 3999999 7999999999999987653

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.08  E-value=5.6e-06  Score=78.01  Aligned_cols=103  Identities=17%  Similarity=0.174  Sum_probs=82.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccc-------hhccc---------------------------
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRL-------RWLNY---------------------------   74 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~-------Rw~n~---------------------------   74 (316)
                      +.||..+...++.++.+||..+|..||..|+ ++|...++.       ||..+                           
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l  189 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL  189 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999999999999998 888877752       22100                           


Q ss_pred             ----------------cCCCCccCCCCHHHHHHHHHHHHhcCC----Chhhhhh------------cCCCCCHHHHHHHH
Q 021188           75 ----------------LKPDIKRGNLTPQEQFLILELHSKWGN----RWSKIAQ------------CLPGRTDNEIKNYW  122 (316)
Q Consensus        75 ----------------L~p~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~------------~lpgRT~~q~knRW  122 (316)
                                      ..+..++..||++||..||-++.+||-    .|..|..            .+..||+.+|..|.
T Consensus       190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc  269 (304)
T 1ofc_X          190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC  269 (304)
T ss_dssp             HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred             HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence                            001224568999999999999999994    5999962            44679999999999


Q ss_pred             HHHHHHHHHh
Q 021188          123 RTRVQKQARQ  132 (316)
Q Consensus       123 ~~~l~k~~r~  132 (316)
                      ..+++-..+.
T Consensus       270 ~tLi~~iekE  279 (304)
T 1ofc_X          270 NTLITLIERE  279 (304)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999866554

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.07  E-value=7e-07  Score=67.00  Aligned_cols=44  Identities=20%  Similarity=0.437  Sum_probs=39.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC---CcchhhcccCCccccccccchhc
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEG---RWNMVAKCAGLKRTGKSCRLRWL   72 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~---~W~~IA~~l~~~Rt~~qcr~Rw~   72 (316)
                      .+.||.+|+++|.+++..|+.+   +|.+||+.|| |||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence            5689999999999999999764   7999999999 999999999995

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=7.7e-06  Score=59.69  Aligned_cols=48  Identities=15%  Similarity=0.235  Sum_probs=44.0

Q ss_pred             CCCccCCCCHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 021188           77 PDIKRGNLTPQEQFLILELHSKWGNRWSKIAQ-CLPGRTDNEIKNYWRT  124 (316)
Q Consensus        77 p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRW~~  124 (316)
                      |.++...||+||-.+..+.+.+||.+|..|++ .+++||..+|...|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            56778899999999999999999999999999 5899999999988864

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.04  E-value=8.4e-06  Score=63.38  Aligned_cols=49  Identities=24%  Similarity=0.265  Sum_probs=44.8

Q ss_pred             CCCHHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWGN---RWSKIAQCLPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      .||.|||..||...++-|.   .|..||+.|.+|+.+||++||+.+++-..+
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~   86 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence            6999999999999999996   799999999999999999999998875543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=97.98  E-value=2.3e-06  Score=64.22  Aligned_cols=43  Identities=28%  Similarity=0.343  Sum_probs=38.6

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWR  123 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~  123 (316)
                      ...||.||+++|..++..|+.    +|.+||..+||||..+|+.+|.
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            458999999999999999984    7999999999999999999875

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.10  E-value=1.7e-06  Score=63.76  Aligned_cols=46  Identities=17%  Similarity=0.217  Sum_probs=42.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWGN---RWSKIAQCLPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G~---~W~~IA~~lpgRT~~q~knRW~~~l~k~  129 (316)
                      .||.|||..||..+++-|.   .|..||..| +|+++||++||+.+++-.
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~Lf   64 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKLF   64 (70)
Confidence            5999999999999999997   799999999 999999999999887643

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.85  E-value=3.3e-05  Score=60.61  Aligned_cols=61  Identities=18%  Similarity=0.224  Sum_probs=52.0

Q ss_pred             chhccccCCCCccCCCCHHHHHHHHHHHHhcCCChhhhhhcCC-----CCCHHHHHHHHHHHHHHHHHhc
Q 021188           69 LRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLP-----GRTDNEIKNYWRTRVQKQARQL  133 (316)
Q Consensus        69 ~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lp-----gRT~~q~knRW~~~l~k~~r~~  133 (316)
                      +.|..+|.    ...||.||...|++|+++|+-+|..|+..+.     .||-.++|.||..+.++.++..
T Consensus        22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r   87 (93)
T 4iej_A           22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            34555664    3689999999999999999999999998763     7999999999999998877654

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=1e-05  Score=59.04  Aligned_cols=49  Identities=12%  Similarity=0.074  Sum_probs=44.5

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCCcchhhc-ccCCccccccccchhcc
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAK-CAGLKRTGKSCRLRWLN   73 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n   73 (316)
                      .|.+....||+||-++..+++.+||. +|..|++ .++ +|+..+|...|..
T Consensus         4 ~p~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            4 GSSGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKELLP-NKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHHSCT-TSCHHHHHHHHHH
T ss_pred             CCCcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCcHHHHHHHHhc
Confidence            37788999999999999999999998 9999999 588 9999999887753

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.60  E-value=8.5e-05  Score=58.42  Aligned_cols=44  Identities=20%  Similarity=0.132  Sum_probs=41.1

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT  124 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~  124 (316)
                      ...||+||.++..+.+..||.+|..||..|++||..+|-..|..
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~   86 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL   86 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence            45899999999999999999999999999999999999998764

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.58  E-value=2.4e-05  Score=61.50  Aligned_cols=51  Identities=18%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC----CccccccccchhccccC
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG----LKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~n~L~   76 (316)
                      -|+.++||.||+..|++|+++|+- +|..|+.++.    .+||..++++||..+..
T Consensus        27 ~L~~~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~   81 (93)
T 3hm5_A           27 YLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICA   81 (93)
T ss_dssp             HTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred             HcCCCCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence            356699999999999999999998 9999999992    27999999999986543

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.53  E-value=0.00014  Score=54.10  Aligned_cols=44  Identities=25%  Similarity=0.385  Sum_probs=40.7

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQ-CLPGRTDNEIKNYWRT  124 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~-~lpgRT~~q~knRW~~  124 (316)
                      ...||+||-.+..+.+.+||.+|..|++ .+++||..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            4589999999999999999999999999 5899999999998863

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.53  E-value=3e-05  Score=77.12  Aligned_cols=47  Identities=21%  Similarity=0.412  Sum_probs=43.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      ...+||.||-+++++++.+||. +|..||+.++ +||..||+.+|.++-
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~~Vg-TKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTT-CHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4689999999999999999997 9999999999 999999999997653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.21  E-value=0.00015  Score=57.05  Aligned_cols=44  Identities=18%  Similarity=0.379  Sum_probs=40.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWL   72 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~   72 (316)
                      ....||+||.+++.+++..||. +|..||+.++ +||..+|...|.
T Consensus        42 ~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~~l~-~Kt~~~cV~~YY   85 (94)
T 4a69_C           42 VMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYY   85 (94)
T ss_dssp             HTCCCCHHHHHHHHHHHHHSTT-CHHHHHHTCT-TCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCC-CHHHHHHHcC-CCCHHHHHHHHh
Confidence            3578999999999999999998 9999999999 999999998774

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.19  E-value=4.6e-05  Score=58.54  Aligned_cols=50  Identities=22%  Similarity=0.496  Sum_probs=40.6

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCC---------CCcchhhccc---CCccccccccchhcccc
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGE---------GRWNMVAKCA---GLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~---------~~W~~IA~~l---~~~Rt~~qcr~Rw~n~L   75 (316)
                      -+...||.+|-..|+++......         .-|..||..|   |..||+.||+.+|.++.
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            36789999999999999976321         1599999986   45799999999998764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.18  E-value=0.00018  Score=53.53  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=40.5

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhc-ccCCccccccccchhcc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAK-CAGLKRTGKSCRLRWLN   73 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~n   73 (316)
                      ....||+||-++..+++.+||. +|..|++ .|+ +|+..+|..-|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~~v~-~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCc-cHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            4568999999999999999998 9999999 588 9999999987753

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.13  E-value=0.00098  Score=58.84  Aligned_cols=105  Identities=11%  Similarity=0.073  Sum_probs=69.6

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhC--CCCcchhhcc--cCCccccccccc-------hhccccC----------------
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHG--EGRWNMVAKC--AGLKRTGKSCRL-------RWLNYLK----------------   76 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g--~~~W~~IA~~--l~~~Rt~~qcr~-------Rw~n~L~----------------   76 (316)
                      |.-....||..|-..|++++.+||  .++|..|++.  +. +++...++.       ++...++                
T Consensus         3 p~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~   81 (211)
T 4b4c_A            3 PRENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKV   81 (211)
T ss_dssp             -----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccc
Confidence            445678899999999999999999  5689999864  33 455543331       1000000                


Q ss_pred             ------------------------------------------------CCCccCCCCHHHHHHHHHHHHhcC-CChhhhh
Q 021188           77 ------------------------------------------------PDIKRGNLTPQEQFLILELHSKWG-NRWSKIA  107 (316)
Q Consensus        77 ------------------------------------------------p~lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA  107 (316)
                                                                      +......||++||..||..+.+|| ++|..|.
T Consensus        82 ~~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir  161 (211)
T 4b4c_A           82 KGPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIK  161 (211)
T ss_dssp             -CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHH
Confidence                                                            001123599999999999999999 8999996


Q ss_pred             h--cC------------CCCCHHHHHHHHHHHHHHH
Q 021188          108 Q--CL------------PGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus       108 ~--~l------------pgRT~~q~knRW~~~l~k~  129 (316)
                      .  .|            ..++...+..|-..+|+-.
T Consensus       162 ~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l  197 (211)
T 4b4c_A          162 MDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL  197 (211)
T ss_dssp             HCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred             hChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence            5  21            1255678899987776643

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.01  E-value=0.00035  Score=53.52  Aligned_cols=50  Identities=12%  Similarity=0.312  Sum_probs=40.9

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCC----------ChhhhhhcCC----CCCHHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGN----------RWSKIAQCLP----GRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~----------~W~~IA~~lp----gRT~~q~knRW~~~l~k~  129 (316)
                      +...||.+|-..||+++.++..          .|..||..|.    .||+.||+.+|.++.+..
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y   66 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF   66 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence            3568999999999999875321          4999998863    699999999999977654

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=96.96  E-value=0.0017  Score=62.58  Aligned_cols=106  Identities=19%  Similarity=0.212  Sum_probs=79.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccc-------hhccc---------------------------
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRL-------RWLNY---------------------------   74 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~-------Rw~n~---------------------------   74 (316)
                      +.||.-+=..++.+..+||..+-..||..|+.+.+...++.       ||..+                           
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~L  203 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEAL  203 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46888888889999999999889999999954567666551       22110                           


Q ss_pred             -------------c--C-CCC--ccCCCCHHHHHHHHHHHHhcC----CChhhhhhc------------CCCCCHHHHHH
Q 021188           75 -------------L--K-PDI--KRGNLTPQEQFLILELHSKWG----NRWSKIAQC------------LPGRTDNEIKN  120 (316)
Q Consensus        75 -------------L--~-p~l--kkg~WT~EED~~Ll~lv~~~G----~~W~~IA~~------------lpgRT~~q~kn  120 (316)
                                   |  . +..  ++..||++||..||-++.+||    +.|..|-..            +..||+..|..
T Consensus       204 ~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~r  283 (374)
T 2y9y_A          204 RRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELAR  283 (374)
T ss_dssp             HHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHH
T ss_pred             HHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHH
Confidence                         0  0 111  345799999999999999999    469999442            45699999999


Q ss_pred             HHHHHHHHHHHhcC
Q 021188          121 YWRTRVQKQARQLN  134 (316)
Q Consensus       121 RW~~~l~k~~r~~~  134 (316)
                      |...+++-..|...
T Consensus       284 Rc~tLi~~IeKE~~  297 (374)
T 2y9y_A          284 RGNTLLQCLEKEFN  297 (374)
T ss_dssp             HHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999987766543

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.45  E-value=0.0013  Score=51.05  Aligned_cols=51  Identities=16%  Similarity=0.313  Sum_probs=44.2

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCC--CCcchhhcccCCccccccccchhccc
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGE--GRWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      +.+-+--.||.|||..|+...++.|.  ..|..||+.|+ +|++.|+++|++..
T Consensus        28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHH
Confidence            45556678999999999999999875  36999999998 99999999999754

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=95.44  E-value=0.00049  Score=50.73  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=41.3

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCC--CCcchhhcccCCccccccccchhccccC
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGE--GRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~--~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      .--.||.|||..|+...++.|.  .-|..||+.+  +|++.|+.+||+..+.
T Consensus        13 ~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           13 IIILWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK   62 (70)
Confidence            4457999999999999998885  3699999988  5999999999987654

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.27  E-value=0.0081  Score=46.98  Aligned_cols=51  Identities=18%  Similarity=0.227  Sum_probs=43.6

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC----Cccccccccchhcccc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG----LKRTGKSCRLRWLNYL   75 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~n~L   75 (316)
                      .-|+...||.||...|.+++++|.- +|-.|+....    ..|+..+.++||..+.
T Consensus        26 ~~L~~~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~   80 (93)
T 4iej_A           26 LYLHDDAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHIC   80 (93)
T ss_dssp             HHTCBTTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence            4466789999999999999999998 9999999874    2689999999997654

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=95.23  E-value=0.047  Score=39.77  Aligned_cols=48  Identities=15%  Similarity=-0.002  Sum_probs=41.2

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCC---hhhhhhcC--CCCCHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNR---WSKIAQCL--PGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~---W~~IA~~l--pgRT~~q~knRW~~~l~  127 (316)
                      .+-.||+|...+.+++|.++|..   +..|.+.|  +|.|..+|+.|.+.+..
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            46689999999999999999954   78998876  79999999999876543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=92.57  E-value=0.064  Score=49.59  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhcc
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKC   57 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~   57 (316)
                      ..|+.+||..|+..|.+||.|+|..|-.-
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~D  197 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDD  197 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence            45999999999999999999999999864

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.87  E-value=0.26  Score=46.23  Aligned_cols=48  Identities=19%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      -+.||..|...++.++.+||. .|..||..++|+|..+|+.++.....+
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            347999999999999999995 899999999999999998777665543

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=90.07  E-value=0.52  Score=41.10  Aligned_cols=50  Identities=14%  Similarity=0.182  Sum_probs=41.6

Q ss_pred             ccCCCCHHHHHHHHHHHHhcC---CChhhhhhc--CCCCCHHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWG---NRWSKIAQC--LPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G---~~W~~IA~~--lpgRT~~q~knRW~~~l~k~  129 (316)
                      ....||+.|-..|++++.+||   .+|..|+..  |.+|+...|+..+...+..-
T Consensus         6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c   60 (211)
T 4b4c_A            6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC   60 (211)
T ss_dssp             --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence            456899999999999999999   489999864  78999999998777666543

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=89.11  E-value=0.26  Score=35.83  Aligned_cols=48  Identities=15%  Similarity=0.107  Sum_probs=37.7

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCC---cchhhcccCC-ccccccccchhcc
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGR---WNMVAKCAGL-KRTGKSCRLRWLN   73 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~---W~~IA~~l~~-~Rt~~qcr~Rw~n   73 (316)
                      ...+-.||+|..++.+++|.+.|. +   +..|.+.|+. +.|..+++-|.+.
T Consensus         4 ~k~r~~WT~elH~~Fv~Av~~LG~-~~AtPk~Il~~M~v~gLT~~~VkSHLQK   55 (64)
T 1irz_A            4 KKPRVLWTHELHNKFLAAVDHLGV-ERAVPKKILDLMNVDKLTRENVASHLQK   55 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCT-TTCCHHHHHHHHCCTTCCHHHHHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHHHHhCC-CCCCcHHHHHHcCCCCCCHHHHHHHHHH
Confidence            456789999999999999999994 4   6788887753 5677777765443

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=86.65  E-value=0.39  Score=44.28  Aligned_cols=27  Identities=30%  Similarity=0.447  Sum_probs=24.5

Q ss_pred             CCCCHHHHHHHHHHHHhcC-CChhhhhh
Q 021188           82 GNLTPQEQFLILELHSKWG-NRWSKIAQ  108 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G-~~W~~IA~  108 (316)
                      ..|+.+||..||..|.+|| +.|..|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3599999999999999999 89999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	316
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-19
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-19
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	4e-18
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-07
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	3e-16
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	6e-06
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-16
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	8e-06
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	2e-15
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	8e-09
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	5e-09
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	1e-11
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	4e-10
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-11
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	4e-11
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-07
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	4e-11
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	4e-10
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-08
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	5e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-06

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.2 bits (193), Expect = 2e-19
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
          L +GPWT EED  L   + ++G  RW+++AK     R GK CR RW N+L P+
Sbjct: 1  LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 79  IKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRT 124
           + +G  T +E   +++L  K+G  RWS IA+ L GR   + +  W  
Sbjct: 1   LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 78.9 bits (194), Expect = 2e-19
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 30  PWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRWLNYLK-----PDIKR 81
           P+++ E   L   +   G GRW  V   A      RT    + +W   +      P  +R
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 82  GNLTPQEQFL-ILELHSKWGNR 102
           G   PQ+    +L  H+ W  +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (183), Expect = 4e-18
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD 78
          +  WT EED  L   + Q+G   W ++A      RT   C+ RW   L P+
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 81  RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRT 124
           +   T +E   + +L  + G + W  IA  LP RTD + ++ W+ 
Sbjct: 1   KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 3e-16
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLK 76
          +R  W  EED  L   + ++GEG W+ +        RT    + RW    K
Sbjct: 1  KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (95), Expect = 6e-06
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)

Query: 80  KRGNLTPQEQFLILELHSKWGN-RWSKIAQCLP--GRTDNEIKNYWRT 124
           KR     +E   +     K+G   WSKI        RT   +K+ WRT
Sbjct: 1   KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.4 bits (167), Expect = 7e-16
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLK-RTGKSCRLRWLNYLKPDI 79
          ++  WT+EE   +   + ++GEG W  ++K      RT    + RW    +  +
Sbjct: 1  KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (94), Expect = 8e-06
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 80  KRGNLTPQEQFLILELHSKWG-NRWSKIAQC--LPGRTDNEIKNYWRT 124
           K+   T +E   +     K+G   W+ I++      RT   IK+ WRT
Sbjct: 1   KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.1 bits (166), Expect = 2e-15
 Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 28  RGPWTLEEDTLLTHYIHQHGEGR-----WNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRG 82
           +  +T EED  +   + ++   R     ++ ++       TG S R R+  YL   ++  
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYV 59

Query: 83  NLTPQEQFLILELHSKWGN 101
               +   L+ +       
Sbjct: 60  YEVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (119), Expect = 8e-09
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 6/55 (10%)

Query: 81  RGNLTPQEQFLILELHSKWGNR------WSKIAQCLPGRTDNEIKNYWRTRVQKQ 129
           + + T +E   IL++  K   R      + +I+  +P  T N I++ +R  + K+
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 2/61 (3%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQ 87
             WT+EE  L    + + G   W  ++K  G  RT    +     Y K  +K G     
Sbjct: 2  SVKWTIEEKELFEQGLAKFGRR-WTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKET 59

Query: 88 E 88
           
Sbjct: 60 P 60

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 14/48 (29%), Positives = 29/48 (60%)

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQ 132
           T +E+ L  +  +K+G RW+KI++ +  RT  ++K+Y R   + + + 
Sbjct: 6   TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 53

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (136), Expect = 1e-11
 Identities = 21/44 (47%), Positives = 32/44 (72%)

Query: 81  RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRT 124
           + + T +E  +I + H + GNRW++IA+ LPGRTDN IKN+W +
Sbjct: 1   KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 44

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.5 bits (126), Expect = 4e-10
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK 76
          +  WT EED ++     + G  RW  +AK     RT  + +  W + ++
Sbjct: 1  KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR 47

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 10/50 (20%), Positives = 16/50 (32%)

Query: 76  KPDIKRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR 125
           K        + QE+    E   +    +  IA  L  +T  E   Y+   
Sbjct: 12  KDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 61

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 23 QQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK 76
          +       W+ +E         QH +  + ++A     ++T   C L +    K
Sbjct: 12 KDRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTKK 63

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 55.7 bits (134), Expect = 4e-11
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL--KRTGKSCRLRWLNYLKPDIKR 81
          PW+ +E+      +  + +   +  A  A     RT +  +  +   L  DIK 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHY-EILVEDIKY 55

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 7/57 (12%)

Query: 85  TPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIES 137
           + +E        + +     +RW+ +A+ + GRT  E+K ++   V+       IES
Sbjct: 5   SAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY---IES 58

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 4e-11
 Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 2/56 (3%)

Query: 18 SSEEDQQELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGL--KRTGKSCRLRW 71
          S  +++      PWT  +  LL   + Q+  G  +   K A     ++ + C  R+
Sbjct: 2  SLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 9/52 (17%), Positives = 22/52 (42%), Gaps = 4/52 (7%)

Query: 76  KPDIKRGNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWR 123
           +        T  +Q L+     ++     + W KIA+C+P ++  +    ++
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 58

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 4e-10
 Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 85  TPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETF 142
           T +EQ L ++   K+G  +  I+  +  ++  ++KN++        R+ NI+   + +
Sbjct: 9   TTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFF----VNYRRRFNIDEVLQEW 62

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK 76
             WT EE  L    I ++G   +  ++   G  ++    +  ++NY +
Sbjct: 5  NARWTTEEQLLAVQAIRKYGRD-FQAISDVIG-NKSVVQVKNFFVNYRR 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 5e-10
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 31 WTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY 74
          WT +E+  L   +   G G W  VA      +T + C   ++ Y
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY 46

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 57  CAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR---WSKIAQCLPGR 113
            A  K +  +             K    T +   +IL +  + G +   +S I+Q L  +
Sbjct: 9   GALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNK 68

Query: 114 TDNEIKNYWRT 124
           T  E+ + +R 
Sbjct: 69  TPVEVSHRFRE 79

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.76
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.75
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.7
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.65
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.62
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.6
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.55
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.53
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.52
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.49
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.45
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.45
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.4
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.37
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.36
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.36
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.32
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.3
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.27
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.24
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.22
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.09
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.08
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.01
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.97
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	98.81
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.12
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.03
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.97
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.74
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.41
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.09
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	97.08
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.23
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.67
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	94.48
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	94.23
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	93.07
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	89.73

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.2e-19  Score=127.34  Aligned_cols=52  Identities=46%  Similarity=0.910  Sum_probs=50.1

Q ss_pred             CccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188           26 LRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD   78 (316)
Q Consensus        26 lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~   78 (316)
                      |+||+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|+
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            6899999999999999999999889999999999 999999999999999985

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=7.6e-21  Score=146.80  Aligned_cols=71  Identities=17%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CcchhhcccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhc
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEG-----RWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKW   99 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~-----~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~   99 (316)
                      |++||+|||++|+++|.+||..     +|.+||+.|+ |||++|||+||.++|+|.++++.||.+||.+|+..+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lp-gRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcC-CCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     3999999998 999999999999999999999999999999988665443

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.6e-18  Score=120.49  Aligned_cols=50  Identities=34%  Similarity=0.751  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPD   78 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~   78 (316)
                      |++||+|||++|+++|.+||.++|.+||+.|+ +||+.||++||.++|+|+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHC-CCCHHHHHHHHHhhCCCC
Confidence            68999999999999999999889999999998 999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=3.9e-17  Score=112.04  Aligned_cols=47  Identities=45%  Similarity=0.864  Sum_probs=44.8

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~  127 (316)
                      +++||+|||++|+++|++||++|+.||++|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=1e-16  Score=112.18  Aligned_cols=50  Identities=30%  Similarity=0.644  Sum_probs=46.7

Q ss_pred             CccCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           79 IKRGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        79 lkkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      +.+|+||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4789999999999999999999 6899999999999999999999988753

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.60  E-value=7.3e-17  Score=123.39  Aligned_cols=73  Identities=27%  Similarity=0.491  Sum_probs=59.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcchhhccc---CCccccccccchhccccC-----CCCccCCCCHHHHHHHHHHHHhcC
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGRWNMVAKCA---GLKRTGKSCRLRWLNYLK-----PDIKRGNLTPQEQFLILELHSKWG  100 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~W~~IA~~l---~~~Rt~~qcr~Rw~n~L~-----p~lkkg~WT~EED~~Ll~lv~~~G  100 (316)
                      .+||+|||++|+++|.+||.++|..|++.+   ..+||+.||++||+++|+     +..+++.|+++|   |+..|.+++
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~   77 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAH   77 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHH
Confidence            489999999999999999999999999863   238999999999999984     667888999776   344444444


Q ss_pred             CChh
Q 021188          101 NRWS  104 (316)
Q Consensus       101 ~~W~  104 (316)
                      .+|+
T Consensus        78 ~~ws   81 (83)
T d2ckxa1          78 AYWS   81 (83)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            5564

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.1e-16  Score=111.72  Aligned_cols=53  Identities=25%  Similarity=0.516  Sum_probs=48.7

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcc--cCCccccccccchhccccCCCCc
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKC--AGLKRTGKSCRLRWLNYLKPDIK   80 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~--l~~~Rt~~qcr~Rw~n~L~p~lk   80 (316)
                      |+++||+|||++|+++|++||.++|..||+.  ++ +||+.||++||++++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~-~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFV-NRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCS-SCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCC-CcCHHHHHHHHHHHhcCCCC
Confidence            5789999999999999999998899999987  44 89999999999999998764

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=1.6e-15  Score=105.07  Aligned_cols=48  Identities=27%  Similarity=0.498  Sum_probs=45.0

Q ss_pred             cCCCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      |+.||+|||++|+++|.+|| ++|..||..|+|||+.||++||.++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            57899999999999999999 6899999999999999999999998854

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.53  E-value=5.4e-16  Score=119.24  Aligned_cols=65  Identities=20%  Similarity=0.344  Sum_probs=59.9

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCchHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNR------WSKIAQCLPGRTDNEIKNYWRTRVQKQARQLNIESNSETFFEA  145 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~------W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~~~~~~e~~~~~~  145 (316)
                      ++.||+|||++|+++|.+||..      |..||+.|||||++|||+||+++|.+.+++..++.+++.++..
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d   71 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRD   71 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHH
Confidence            5799999999999999999964      9999999999999999999999999999999999988876543

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=1.6e-15  Score=103.89  Aligned_cols=47  Identities=28%  Similarity=0.567  Sum_probs=44.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      |++||+|||++|+++|++||. +|..||+.|+ +||+.||+.||.++|+
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLP-GRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCT-TCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcC-CCCHHHHHHHHHHHcC
Confidence            689999999999999999998 8999999999 9999999999998763

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.5e-15  Score=106.11  Aligned_cols=50  Identities=30%  Similarity=0.495  Sum_probs=45.0

Q ss_pred             ccCCCCHHHHHHHHHHHHHhCCCCcchhhcccC-CccccccccchhccccC
Q 021188           27 RRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG-LKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        27 kkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~-~~Rt~~qcr~Rw~n~L~   76 (316)
                      ++++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||.++++
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            689999999999999999999999999998753 28999999999998753

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3e-15  Score=102.48  Aligned_cols=44  Identities=27%  Similarity=0.598  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccc
Q 021188           30 PWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        30 ~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      .||.|||++|+++|.+||.++|..||+.|+ +||+.|||.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~-~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcC-CCCHHHHHHHHHHh
Confidence            599999999999999999989999999999 99999999999876

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=98.95  Aligned_cols=48  Identities=31%  Similarity=0.395  Sum_probs=43.5

Q ss_pred             ccCCCCHHHHHHHHHHHHhcC-CChhhhhhcC--CCCCHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWG-NRWSKIAQCL--PGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~l--pgRT~~q~knRW~~~l~  127 (316)
                      ++++||+|||++|+++|.+|| ++|..||+.+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999999 5999999875  59999999999998754

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.9e-14  Score=99.86  Aligned_cols=50  Identities=28%  Similarity=0.421  Sum_probs=45.4

Q ss_pred             ccCCCCHHHHHHHHHHHHhcC-CChhhhhhc--CCCCCHHHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWG-NRWSKIAQC--LPGRTDNEIKNYWRTRVQKQ  129 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G-~~W~~IA~~--lpgRT~~q~knRW~~~l~k~  129 (316)
                      ++.+||+|||++|+++|++|| ++|..||+.  |++||+.||++||++++++.
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~   53 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG   53 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCC
Confidence            477999999999999999999 689999987  56999999999999988753

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1e-13  Score=100.49  Aligned_cols=53  Identities=26%  Similarity=0.374  Sum_probs=48.8

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHHHHHHHhc
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRVQKQARQL  133 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l~k~~r~~  133 (316)
                      ...||+|||.+|++++.+||.+|..||+.|++||+.||++||+.++++..+.+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~   54 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCG   54 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcC
Confidence            35799999999999999999999999999999999999999999998866544

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.4e-13  Score=92.74  Aligned_cols=43  Identities=23%  Similarity=0.396  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWG-NRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G-~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      .||.|||.+|+++|.+|| ++|..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            599999999999999999 5899999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.2e-13  Score=98.83  Aligned_cols=50  Identities=24%  Similarity=0.575  Sum_probs=46.0

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCC---CcchhhcccCCccccccccchhcc
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEG---RWNMVAKCAGLKRTGKSCRLRWLN   73 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~---~W~~IA~~l~~~Rt~~qcr~Rw~n   73 (316)
                      .+...+++||+|||++|+++|.+||.+   +|.+||+.|| +||+.||+.||+.
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~-~Rt~~qc~~R~~~   59 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKL   59 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            477889999999999999999999976   4999999999 9999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.4e-14  Score=103.15  Aligned_cols=59  Identities=27%  Similarity=0.438  Sum_probs=52.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccCCCCccCCCCHHH
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQE   88 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EE   88 (316)
                      ..+||+|||++|+++|.+||. +|..||+.|+ +||+.||+.||.+++.+..+.+.+.+.+
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~-~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-RWTKISKLIG-SRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-hHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            468999999999999999996 9999999999 9999999999999998877777665443

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=93.30  Aligned_cols=50  Identities=18%  Similarity=0.377  Sum_probs=45.2

Q ss_pred             CCCCccCCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           76 KPDIKRGNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        76 ~p~lkkg~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      .+...+++||+|||.+|+++|.+||.    +|.+||..|||||+.||+.||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            44567889999999999999999995    599999999999999999999764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.30  E-value=2.4e-12  Score=99.52  Aligned_cols=75  Identities=19%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             cccCCccccccccchhccccCCCCccCCCCHHHHHHHHHHHHhcCCC---hhhhhhcCCCCCHHHHHHHHHHHHHHHHH
Q 021188           56 KCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQFLILELHSKWGNR---WSKIAQCLPGRTDNEIKNYWRTRVQKQAR  131 (316)
Q Consensus        56 ~~l~~~Rt~~qcr~Rw~n~L~p~lkkg~WT~EED~~Ll~lv~~~G~~---W~~IA~~lpgRT~~q~knRW~~~l~k~~r  131 (316)
                      ..++ ..+..++..++.+..+.......||.|||++||+.++++|.+   |..||+.|+||+++|||+||+.+++-.-+
T Consensus         9 ~~~p-~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf~~   86 (95)
T d1ug2a_           9 GALP-KASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT   86 (95)
T ss_dssp             CCCC-CCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred             ccCC-CCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            3455 677888888888888888888899999999999999999976   99999999999999999999998875533

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.27  E-value=3.5e-12  Score=91.94  Aligned_cols=47  Identities=21%  Similarity=0.425  Sum_probs=42.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWGN----RWSKIAQCLPGRTDNEIKNYWRTRVQK  128 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G~----~W~~IA~~lpgRT~~q~knRW~~~l~k  128 (316)
                      .+||+|||.+|++++.+||.    +|.+||..|||||..||++||+.+++.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~d   52 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   52 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            58999999999999999995    499999999999999999999776543

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.24  E-value=6.7e-12  Score=95.33  Aligned_cols=54  Identities=20%  Similarity=0.321  Sum_probs=46.9

Q ss_pred             CCCCHHHHHHHHHHHHhcC-CChhhhhhc----CCCCCHHHHHHHHHHHHHHHHHhcCC
Q 021188           82 GNLTPQEQFLILELHSKWG-NRWSKIAQC----LPGRTDNEIKNYWRTRVQKQARQLNI  135 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G-~~W~~IA~~----lpgRT~~q~knRW~~~l~k~~r~~~~  135 (316)
                      .+||.|||++|+++|.+|| ++|..|++.    +++||+.||++||+++++.......+
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~   59 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQ   59 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGG
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCccc
Confidence            3899999999999999999 589999975    68999999999999999876544333

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.22  E-value=1.2e-12  Score=94.40  Aligned_cols=44  Identities=18%  Similarity=0.398  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---cchhhcccCCccccccccchhcc
Q 021188           29 GPWTLEEDTLLTHYIHQHGEGR---WNMVAKCAGLKRTGKSCRLRWLN   73 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~~---W~~IA~~l~~~Rt~~qcr~Rw~n   73 (316)
                      .+||+|||++|+++|.+||.+.   |.+||+.|+ +||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~-gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            5899999999999999999864   999999999 9999999999953

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.9e-11  Score=88.21  Aligned_cols=46  Identities=20%  Similarity=0.113  Sum_probs=42.9

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTR  125 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~  125 (316)
                      ...+||+||+.+|++++.+||.+|..||..|||||..||+++|...
T Consensus        16 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          16 VMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999753

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-11  Score=87.84  Aligned_cols=46  Identities=20%  Similarity=0.402  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      +..||+|||.+|++++..||.+|..||++|+|||..+|++||..+.
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            4679999999999999999999999999999999999999998764

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=4.7e-11  Score=86.30  Aligned_cols=47  Identities=21%  Similarity=0.446  Sum_probs=43.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      +.+||++||++|++++.+||. +|..||+.|| +||..||+.||.++.+
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~kt~~q~~~~y~~~~k   51 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGR-DFQAISDVIG-NKSVVQVKNFFVNYRR   51 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSS-CHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-hHHHHHHHcC-CCCHHHHHHHHHHHHh
Confidence            467999999999999999997 8999999999 9999999999988654

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=5.7e-11  Score=86.63  Aligned_cols=50  Identities=16%  Similarity=0.285  Sum_probs=44.7

Q ss_pred             cCCccCCCCHHHHHHHHHHHHHhCCCCcchhhcccCCccccccccchhcccc
Q 021188           24 QELRRGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        24 ~~lkkg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      +.....+||+|||++|+++|.+||. +|..||+.|+ +||..||+.||....
T Consensus        13 ~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~~~~-~rt~~q~~~~yy~~k   62 (68)
T d1xc5a1          13 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIASFLE-RKTVAECVLYYYLTK   62 (68)
T ss_dssp             STTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHHHTT-TSCHHHHHHHHHHHT
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            3445678999999999999999997 9999999999 999999999997643

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=4.6e-10  Score=86.54  Aligned_cols=52  Identities=15%  Similarity=0.323  Sum_probs=46.2

Q ss_pred             hcCCccCCCCHHHHHHHHHHHHHhCCCC--cchhhcccCCccccccccchhcccc
Q 021188           23 QQELRRGPWTLEEDTLLTHYIHQHGEGR--WNMVAKCAGLKRTGKSCRLRWLNYL   75 (316)
Q Consensus        23 ~~~lkkg~WT~eED~~L~~lV~~~g~~~--W~~IA~~l~~~Rt~~qcr~Rw~n~L   75 (316)
                      ..+.+...||.|||+.|++.++++|...  |..||+.|+ +|++.|||.||...+
T Consensus        28 s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~-~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHH
T ss_pred             CCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4667889999999999999999999632  999999998 999999999997654

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=2e-06  Score=59.94  Aligned_cols=42  Identities=26%  Similarity=0.404  Sum_probs=39.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCChhhhhhc-CCCCCHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWGNRWSKIAQC-LPGRTDNEIKNYWRT  124 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G~~W~~IA~~-lpgRT~~q~knRW~~  124 (316)
                      .||+||..++.+++..||.+|..|++. +|+||..+|.+.|..
T Consensus         3 ~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            699999999999999999999999986 599999999999864

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=2.3e-06  Score=60.13  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           82 GNLTPQEQFLILELHSKWG----NRWSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        82 g~WT~EED~~Ll~lv~~~G----~~W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      +.||.||+.+|.+++.+|.    .+|.+||..+ |||..+|..|++.+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            4799999999999999997    3699999999 999999999997643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=9.6e-07  Score=62.12  Aligned_cols=44  Identities=25%  Similarity=0.394  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CcchhhcccCCccccccccchhccc
Q 021188           29 GPWTLEEDTLLTHYIHQHGEG---RWNMVAKCAGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        29 g~WT~eED~~L~~lV~~~g~~---~W~~IA~~l~~~Rt~~qcr~Rw~n~   74 (316)
                      +.||.+|+.+|.+++.+|..+   +|.+||+.+|  |+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~vg--kt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHELG--RSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHHT--SCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence            579999999999999999754   6999999995  9999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=6.4e-06  Score=57.28  Aligned_cols=43  Identities=14%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcchhhcc-cCCccccccccchhccc
Q 021188           30 PWTLEEDTLLTHYIHQHGEGRWNMVAKC-AGLKRTGKSCRLRWLNY   74 (316)
Q Consensus        30 ~WT~eED~~L~~lV~~~g~~~W~~IA~~-l~~~Rt~~qcr~Rw~n~   74 (316)
                      .||+||-.++.+++..||. +|..|++. +| +|+..||...|...
T Consensus         3 ~WT~eE~~~F~~~~~~yGK-df~~I~~~~v~-~Ks~~~~v~fYY~~   46 (57)
T d2crga1           3 EWSASEACLFEEALEKYGK-DFNDIRQDFLP-WKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTCS-CHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHcc-cHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence            6999999999999999998 99999986 57 99999999988653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00019  Score=46.87  Aligned_cols=46  Identities=20%  Similarity=0.395  Sum_probs=40.3

Q ss_pred             cCCCCHHHHHHHHHHHHhcCCChhhhhhcC---CCCCHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGNRWSKIAQCL---PGRTDNEIKNYWRTRV  126 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~~W~~IA~~l---pgRT~~q~knRW~~~l  126 (316)
                      +..||+||-.-|+..|+++|+.|..|--.+   +||+..++..+|+.++
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l~   49 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLI   49 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhhC
Confidence            357999999999999999999999997543   8999999999987653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00012  Score=51.07  Aligned_cols=47  Identities=15%  Similarity=0.299  Sum_probs=40.0

Q ss_pred             cCCCCHHHHHHHHHHHHhcCC-------C--hhhhhh-cCCCCCHHHHHHHHHHHHH
Q 021188           81 RGNLTPQEQFLILELHSKWGN-------R--WSKIAQ-CLPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        81 kg~WT~EED~~Ll~lv~~~G~-------~--W~~IA~-~lpgRT~~q~knRW~~~l~  127 (316)
                      +.+||.|||..|++.|+++..       +  |...++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            468999999999999988742       2  999995 6799999999999987663

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00015  Score=50.64  Aligned_cols=48  Identities=21%  Similarity=0.411  Sum_probs=40.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Ccchhhc-ccCCccccccccchhccccC
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEG--------RWNMVAK-CAGLKRTGKSCRLRWLNYLK   76 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~--------~W~~IA~-~l~~~Rt~~qcr~Rw~n~L~   76 (316)
                      |-+||.|||+.|++.|.++...        =|.++++ .++ .+|-.+-|+||..+|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~-~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCC-CCCHHHHHHHHHHHhc
Confidence            5689999999999999997432        2999985 566 8999999999998875

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.08  E-value=0.00057  Score=48.28  Aligned_cols=48  Identities=15%  Similarity=0.014  Sum_probs=40.0

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCCh---hhhhhc--CCCCCHHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNRW---SKIAQC--LPGRTDNEIKNYWRTRVQ  127 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~W---~~IA~~--lpgRT~~q~knRW~~~l~  127 (316)
                      .+-.||+||..+.++++..+|..|   ..|.+.  ++|+|..+|+.|-+.+.-
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            355799999999999999999877   467666  499999999998776543

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.23  E-value=0.0014  Score=46.23  Aligned_cols=50  Identities=16%  Similarity=0.169  Sum_probs=38.3

Q ss_pred             CCccCCCCHHHHHHHHHHHHHhCCCCc--chhhcccCC-ccccccccchhccc
Q 021188           25 ELRRGPWTLEEDTLLTHYIHQHGEGRW--NMVAKCAGL-KRTGKSCRLRWLNY   74 (316)
Q Consensus        25 ~lkkg~WT~eED~~L~~lV~~~g~~~W--~~IA~~l~~-~Rt~~qcr~Rw~n~   74 (316)
                      +..+-.||+||.++++++|+.+|.+.|  ..|.+.|+. ++|..||+-|.+.|
T Consensus         4 kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            345678999999999999999997444  477776532 78889998765543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.0081  Score=42.50  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=42.2

Q ss_pred             cCCCCHHHHHHHHHHHHHh---CCCCcchhhcccCCccccccccchhccccCC
Q 021188           28 RGPWTLEEDTLLTHYIHQH---GEGRWNMVAKCAGLKRTGKSCRLRWLNYLKP   77 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~---g~~~W~~IA~~l~~~Rt~~qcr~Rw~n~L~p   77 (316)
                      .+.|+++|=++|-.++...   ..+-|..||..+| .|++..|...|...+..
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VG-tRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHc-cCCHHHHHHHHHhCccc
Confidence            4699999999999999865   4557999999999 99999999999876543

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.48  E-value=0.054  Score=38.12  Aligned_cols=47  Identities=13%  Similarity=0.192  Sum_probs=41.0

Q ss_pred             ccCCCCHHHHHHHHHHHHhcCCC----hhhhhhcCCCCCHHHHHHHHHHHH
Q 021188           80 KRGNLTPQEQFLILELHSKWGNR----WSKIAQCLPGRTDNEIKNYWRTRV  126 (316)
Q Consensus        80 kkg~WT~EED~~Ll~lv~~~G~~----W~~IA~~lpgRT~~q~knRW~~~l  126 (316)
                      ..+.|+++|-.+|-.++..+...    |..||..+..|+..+|..+|...+
T Consensus         7 ~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~   57 (73)
T d1wgxa_           7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENP   57 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSS
T ss_pred             cccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCc
Confidence            35689999999999999888753    999999999999999999887653

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.23  E-value=0.012  Score=38.12  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcchhhcccC--Cccccccccchhcc
Q 021188           28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAG--LKRTGKSCRLRWLN   73 (316)
Q Consensus        28 kg~WT~eED~~L~~lV~~~g~~~W~~IA~~l~--~~Rt~~qcr~Rw~n   73 (316)
                      +..||.||-.-|...|+++|. .|+.|-=.+|  .||+......+|..
T Consensus         1 Rknft~eEv~YL~~GVK~~G~-~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcc-hhhhhhhccCCCCCchhhHHHHHHHh
Confidence            457999999999999999998 9999987664  37888887777754

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.07  E-value=0.079  Score=41.73  Aligned_cols=55  Identities=20%  Similarity=0.297  Sum_probs=44.8

Q ss_pred             CCccCCCCHHHHHHHHHHHHhcC-CC---hhhhhh------------cCCCCCHHHHHHHHHHHHHHHHHh
Q 021188           78 DIKRGNLTPQEQFLILELHSKWG-NR---WSKIAQ------------CLPGRTDNEIKNYWRTRVQKQARQ  132 (316)
Q Consensus        78 ~lkkg~WT~EED~~Ll~lv~~~G-~~---W~~IA~------------~lpgRT~~q~knRW~~~l~k~~r~  132 (316)
                      ..++..+|+|||..|+-.+.+|| ++   |..|-.            .+..||+..+..|...+++-..|.
T Consensus        46 ~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~kE  116 (128)
T d1ofcx2          46 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE  116 (128)
T ss_dssp             TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHHH
Confidence            44556799999999999999999 45   888743            234699999999999999877664

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.73  E-value=0.47  Score=31.36  Aligned_cols=42  Identities=21%  Similarity=0.347  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHH
Q 021188           83 NLTPQEQFLILELHSKWGN-RWSKIAQCLPGRTDNEIKNYWRT  124 (316)
Q Consensus        83 ~WT~EED~~Ll~lv~~~G~-~W~~IA~~lpgRT~~q~knRW~~  124 (316)
                      .|+.-|=..++.+..+||. +-..||..|.|+|..+|+.+...
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~v   43 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV   43 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHHH
Confidence            4899999999999999994 89999999999999999876544