Citrus Sinensis ID: 021238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Secondary Structure (PSIPRED)
ccEEEcccccccEEEEEEEEEEEccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEEEccccEEEEEEEEcccccccccccEEEEEcccccccccEEEEcccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEEEccEEEEEccEEEEEEEccccEEEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccEEEEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEEEEEccccccccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEccccccEEEEEEEEcccccccccEEEEEEEcccHccccccEEEccccccccEEEEEEEEccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccEEEEcHcEEEEEHHHcccEEEEEEEHHHHHHEEEcccccccccEEEEEEcccccccccccccccccEEEEEEEHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEEccccc
Coil and Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLiganlngtsdpyaiitcgsekrfssmvpgsrypmwgeefnfsvdelpvQIIVTIYDWDIIWKSTVLGSVIVTVesegqtgavwytldspsgqvclhiktiklpvnasrvmngyAGANARRrasldkqgptvvhqkpgplqtiFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKviipigdideiqrsqhafinPAITIILRmgagghgvpplgspdgrvryKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFmnhcvcnfyhylplql
Flexible Loop (DISEMBL)
mvqfkgdpqtnSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Low Complexity Region (SEG)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMngyaganarrraSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Disordered region (IsUnstruct)
************AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGA********************GPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPL**
Disordered Region (DISOPRED)
*************YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTA**************************YHYLPLQ*
Disordered Region (DISEMBL)
********QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Disordered Region (DISPRO)
*********TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRR**LDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRSYCFMNHCVCNFYHYLPLQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q9FGS8	1027	C2 and GRAM domain-contai	no	no	0.819	0.251	0.241	9e-15
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.866	0.267	0.245	9e-13
O42976	764	Uncharacterized membrane	yes	no	0.387	0.159	0.283	2e-10
Q5M7N9	889	Extended synaptotagmin-3	yes	no	0.4	0.141	0.313	3e-09
O43374	803	Ras GTPase-activating pro	yes	no	0.279	0.109	0.325	5e-09
C9J798	803	Putative Ras GTPase-activ	yes	no	0.279	0.109	0.325	5e-09
Q6PFQ7	802	Ras GTPase-activating pro	no	no	0.317	0.124	0.291	6e-08
Q4KUS2	1712	Protein unc-13 homolog A	no	no	0.342	0.063	0.296	2e-07
Q9UPW8	1703	Protein unc-13 homolog A	no	no	0.342	0.063	0.296	2e-07
P27715	2155	Phorbol ester/diacylglyce	no	no	0.342	0.050	0.296	2e-07

>sp|Q9FGS8|C2GR2_ARATH C2 and GRAM domain-containing protein At5g50170 OS=Arabidopsis thaliana GN=At5g50170 PE=2 SV=1

 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 114/277 (41%), Gaps = 19/277 (6%)

Query: 5   KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
           +G       +++ + L+   NL         DPY + TC  + R SS+   ++ P W E 
Sbjct: 530 QGVKANGKGWILTIALIKGTNLASVEATELFDPYVVFTCNGKTRTSSVKLQAQDPQWNEV 589

Query: 65  FNFSVDELPVQII-VTIYDWDIIW-KSTVLGSVIV-----TVESEGQTGAVWYTLDSPSG 117
             F   E P  ++ V ++D+D  + +   LG   +     T +             + + 
Sbjct: 590 IEFDAMEEPPSVLDVEVFDFDGPFDQGASLGHAEINFLKHTADELADLSVALVGNHAQAS 649

Query: 118 QVCLHIKTIKLPVNASRVMNGYAGANARRRAS-LDKQGPTVVHQKPGPLQTIFNLLPDEF 176
           Q  L ++      N    M  Y     +     L+ + P    QK    Q +F L  +EF
Sbjct: 650 QSKLQLRIFLENKNGVETMKDYLSKVEKEVGKKLNIRSP----QKNSAFQKLFGLPHEEF 705

Query: 177 VELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--- 233
           +   Y+C ++R     G++++SA  + F+SN F  + K      DID+IQ     F    
Sbjct: 706 LLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLWEDIDDIQVLPPTFASLG 765

Query: 234 NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
           +P + IIL+   G    HG       +GR+ + F SF
Sbjct: 766 SPLLLIILKKNRGLDAKHGAKS-QDDEGRLSFYFQSF 801

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 74.3 bits (181), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 128/302 (42%), Gaps = 29/302 (9%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
            +L+ + L+   +L   + +G  DPY + T   + R SS+      P W E F F     
Sbjct: 534 GWLLTVALIEGVDLAAVDPSGHCDPYIVFTSNGKTRTSSIKFQKSNPQWNEIFEFDAMAD 593

Query: 73  PVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVC---LHIKT 125
           P  ++ V ++D+D  +   V LG   V  V S       VW  L     Q C   LH++ 
Sbjct: 594 PPSVLNVEVFDFDGPFDEAVSLGHAEVNFVRSNISDLADVWVPLQGKLAQACQSKLHLRI 653

Query: 126 IKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVI 185
                    V+  Y     +    + K+      Q     Q +F L  +EF+   ++C +
Sbjct: 654 FLDHTGGGDVVRDYLN---KMEKEVGKKINVRSPQTNSAFQKLFGLPQEEFLINDFTCHL 710

Query: 186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITIIL- 241
           +R     GR+++SA  + F+++ F  + K      DI+EIQ    +  +  +P + + L 
Sbjct: 711 KRKMPLQGRLFLSARIVGFYASIFGNKTKFFFLWEDIEEIQVLPPTLASMGSPIVVMTLR 770

Query: 242 -------RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKV 294
                  R+GA  H        +GR+++ F SF + N A + +    K     L  E+KV
Sbjct: 771 PNRGLDARIGAKTH------DEEGRLKFHFHSFVSFNVAQKTIMALWK--AKSLTPEQKV 822

Query: 295 RS 296
           ++
Sbjct: 823 QA 824

Arabidopsis thaliana (taxid: 3702)

>sp|O42976|YGZ7_SCHPO Uncharacterized membrane protein C20F10.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC20F10.07 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 70/155 (45%), Gaps = 33/155 (21%)

Query: 136 MNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLP--DEFVELSYSCVIERSFLYHG 193
           ++GYA AN++R     +               IF +LP  D  ++  Y C ++R    HG
Sbjct: 185 LSGYAFANSKRNRDFHR---------------IFKVLPPEDHLID-DYGCALQRDIFLHG 228

Query: 194 RMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPL 253
           RMY+S  HICF+S+ F     ++IP+ +I  +++   A + P    I  + A        
Sbjct: 229 RMYLSESHICFNSSIFGWVTNIVIPVTEIVSVEKKSTAVVFPNAIQITTLHA-------- 280

Query: 254 GSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTML 288
                  RY FASF +R+   + +    KN H  L
Sbjct: 281 -------RYIFASFISRDTTYQLIIAIWKNTHPFL 308

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 72/137 (52%), Gaps = 11/137 (8%)

Query: 15  LIKLELLAAKNLIGAN------LNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           +++L L+ A++LI  +      + G SDPYA++  G++   S  +  +  P WGE + F 
Sbjct: 349 VLRLHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFV 408

Query: 69  VDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL-DSPSGQVCLHIK 124
           V E+P Q + V +YD D   K   LGS+++ +E   Q   V  W+ L D PSG V L ++
Sbjct: 409 VHEVPGQDLEVDLYDEDPD-KDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLE 467

Query: 125 TIKLPVNASRVMNGYAG 141
            + L   + ++     G
Sbjct: 468 WLSLLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|O43374|RASL2_HUMAN Ras GTPase-activating protein 4 OS=Homo sapiens GN=RASA4 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis.

Homo sapiens (taxid: 9606)

>sp|C9J798|RAS4B_HUMAN Putative Ras GTPase-activating protein 4B OS=Homo sapiens GN=RASA4B PE=5 SV=2

 Score = 62.4 bits (150), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NGTSDP+  +      R +S+V  S YP W E F F + E 
Sbjct: 132 ACRLRCSVLEARDLAPKDRNGTSDPFVRVRYKGRTRETSIVKKSCYPRWNETFEFELQEG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVE 100
            ++ + V  +DWD++ ++  LG V++ V+
Sbjct: 192 AMEALCVEAWDWDLVSRNDFLGKVVIDVQ 220

Ca(2+)-dependent Ras GTPase-activating protein, that may play a role in the Ras-MAPK pathway.

Homo sapiens (taxid: 9606)

>sp|Q6PFQ7|RASL2_MOUSE Ras GTPase-activating protein 4 OS=Mus musculus GN=Rasa4 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 3/103 (2%)

Query: 13  AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL 72
           A  ++  +L A++L   + NG SDP+  +      + +S+V  S YP W E F+F +++ 
Sbjct: 132 ASRLRCAVLEARDLAPKDRNGASDPFVRVHYNGRTQETSVVKKSCYPRWNETFDFELEKG 191

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
             + ++V  +DWD++ ++  LG V V V+     Q    W+ L
Sbjct: 192 ASEALLVEAWDWDLVSRNDFLGKVAVNVQRLCSAQQEEGWFRL 234

Ca(2+)-dependent Ras GTPase-activating protein, that switches off the Ras-MAPK pathway following a stimulus that elevates intracellular calcium. Functions as an adaptor for Cdc42 and Rac1 during FcR-mediated phagocytosis. Isoform 2 activates the Ras pathway and promotes RANKL shedding by modulating the expression of MMP14.

Mus musculus (taxid: 10090)

>sp|Q4KUS2|UN13A_MOUSE Protein unc-13 homolog A OS=Mus musculus GN=Unc13a PE=1 SV=3

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 687 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 746

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 747 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 806

Query: 119 VCLHI 123
           + LHI
Sbjct: 807 IRLHI 811

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses. Also involved in secretory granule priming in insulin secretion.

Mus musculus (taxid: 10090)

>sp|Q9UPW8|UN13A_HUMAN Protein unc-13 homolog A OS=Homo sapiens GN=UNC13A PE=2 SV=4

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 678 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 737

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 738 IKVRVWDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 797

Query: 119 VCLHI 123
           + LHI
Sbjct: 798 IRLHI 802

Plays a role in vesicle maturation during exocytosis as a target of the diacylglycerol second messenger pathway. Involved in neurotransmitter release by acting in synaptic vesicle priming prior to vesicle fusion and participates in the activity-dependent refilling of readily releasable vesicle pool (RRP). Essential for synaptic vesicle maturation in most excitatory/glutamatergic but not inhibitory/GABA-mediated synapses (By similarity). Also involved in secretory granule priming in insulin secretion (By similarity). Interacts with FBXO45 (via SRY domain); leading to the degradation of UNC13A by the proteasome.

Homo sapiens (taxid: 9606)

>sp|P27715|UNC13_CAEEL Phorbol ester/diacylglycerol-binding protein unc-13 OS=Caenorhabditis elegans GN=unc-13 PE=1 SV=4

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 17/125 (13%)

Query: 16   IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
            I L +L A+ LI  +  G SDPY     G  KR +  +     P+W E+F+F       +
Sbjct: 1159 ITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDR 1218

Query: 76   IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
            I V ++D D   KS +           LG  ++ V +      VWY L+      + SG 
Sbjct: 1219 IKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGA 1278

Query: 119  VCLHI 123
            + LHI
Sbjct: 1279 IRLHI 1283

May form part of a signal transduction pathway, transducing the signal from diacylglycerol to effector functions. One such function could be the release of neurotransmitter from neurons.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
255582207	532	conserved hypothetical protein [Ricinus	0.939	0.556	0.891	1e-155
224121784	590	predicted protein [Populus trichocarpa]	0.939	0.501	0.875	1e-154
359478193	588	PREDICTED: C2 and GRAM domain-containing	0.930	0.498	0.877	1e-153
449484724	598	PREDICTED: LOW QUALITY PROTEIN: C2 and G	0.920	0.484	0.831	1e-144
449468844	598	PREDICTED: C2 and GRAM domain-containing	0.920	0.484	0.831	1e-144
356519666	585	PREDICTED: C2 and GRAM domain-containing	0.926	0.499	0.850	1e-144
297820804	586	C2 domain-containing protein [Arabidopsi	0.930	0.5	0.806	1e-144
22331873	594	C2 domain and GRAM domain-containing pro	0.930	0.493	0.795	1e-143
356500100	584	PREDICTED: C2 and GRAM domain-containing	0.926	0.5	0.843	1e-143
357475567	453	GRAM domain-containing protein [Medicago	0.920	0.640	0.828	1e-142

>gi|255582207|ref|XP_002531896.1| conserved hypothetical protein [Ricinus communis] gi|223528463|gb|EEF30495.1| conserved hypothetical protein [Ricinus communis]

 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 264/296 (89%), Positives = 273/296 (92%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQ NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 75  MGQLKGDPQGNSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 134

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKSTVLGSV V VESEGQTGAVWYTLDSPSGQVC
Sbjct: 135 WGEEFNFSVDELPVQIQVTIYDWDIIWKSTVLGSVTVPVESEGQTGAVWYTLDSPSGQVC 194

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKL VN+SR MNGYAGA+ARRR SLD QGPTVVHQKPGPLQTIFNL  DE VE S
Sbjct: 195 LHIKTIKLSVNSSRAMNGYAGASARRRISLDTQGPTVVHQKPGPLQTIFNLPADEIVEHS 254

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKVIIP+GDIDEI+RSQHAFINPAITII
Sbjct: 255 YSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVIIPLGDIDEIRRSQHAFINPAITII 314

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AK YH MLE +KK R+
Sbjct: 315 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRALQRAAKTYHDMLEVQKKERA 370

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121784|ref|XP_002330652.1| predicted protein [Populus trichocarpa] gi|222872256|gb|EEF09387.1| predicted protein [Populus trichocarpa]

 Score =  549 bits (1415), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 259/296 (87%), Positives = 272/296 (91%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGD Q NSAY+IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR PM
Sbjct: 66  MGQLKGDSQANSAYIIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRNPM 125

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGA WYTLDSPSGQVC
Sbjct: 126 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAEWYTLDSPSGQVC 185

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIK+P N++R +NGYAGAN RRR S DKQGPTVVHQKPGPLQTIF+LLPDE VE S
Sbjct: 186 LHIKTIKVPANSARAVNGYAGANPRRRISSDKQGPTVVHQKPGPLQTIFSLLPDEVVEHS 245

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVSAW+ICFHSN FS+QMKV+IP GDIDEI+RSQHAFINPA+TII
Sbjct: 246 YSCALERSFLYHGRMYVSAWNICFHSNVFSKQMKVVIPFGDIDEIRRSQHAFINPAVTII 305

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKNY TMLEAEKK R+
Sbjct: 306 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRGLQRAAKNYRTMLEAEKKERA 361

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478193|ref|XP_002273984.2| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Vitis vinifera] gi|296084286|emb|CBI24674.3| unnamed protein product [Vitis vinifera]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 257/293 (87%), Positives = 271/293 (92%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q KGDPQTNSAY+IKLELLAAKNLIGANLNG SDPYAIITCG EKRFSSMVPGSR PM
Sbjct: 65  MGQLKGDPQTNSAYVIKLELLAAKNLIGANLNGMSDPYAIITCGEEKRFSSMVPGSRNPM 124

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVD+LPV+I VTIYDWDIIWKST+LGSV V VE+EGQTGAVWY+LDS SGQVC
Sbjct: 125 WGEEFNFSVDDLPVKINVTIYDWDIIWKSTILGSVTVPVETEGQTGAVWYSLDSTSGQVC 184

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELS 180
           LHIKTIKLPVN+SRV+NGY+GAN RRR S DKQGPT+VHQKPGPLQTIFNL PDE VE S
Sbjct: 185 LHIKTIKLPVNSSRVLNGYSGANTRRRMSSDKQGPTLVHQKPGPLQTIFNLHPDEVVEHS 244

Query: 181 YSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITII 240
           YSC +ERSFLYHGRMYVS WHICFHSN FS+QMKVIIP  DIDEI+RSQHAFINPAITII
Sbjct: 245 YSCALERSFLYHGRMYVSGWHICFHSNVFSKQMKVIIPFQDIDEIKRSQHAFINPAITII 304

Query: 241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK 293
           LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR LQR AKN+HTMLEAEKK
Sbjct: 305 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRTLQRFAKNFHTMLEAEKK 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484724|ref|XP_004156962.1| PREDICTED: LOW QUALITY PROTEIN: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/290 (83%), Positives = 262/290 (90%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKK ++
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKA 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468844|ref|XP_004152131.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Cucumis sativus]

 Score =  518 bits (1334), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 241/290 (83%), Positives = 262/290 (90%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFN 66
           D Q+NSAYLIKLELLAAKNLI ANLNGTSDPYAIITCG+EKRFSSM+PGSR PMWGEEFN
Sbjct: 82  DLQSNSAYLIKLELLAAKNLIAANLNGTSDPYAIITCGTEKRFSSMIPGSRNPMWGEEFN 141

Query: 67  FSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI 126
           FSVDELPVQI +TIYDWDI+WKS VLGSV VTVE+EG TGAVWYTLDSPSGQVCLHIKTI
Sbjct: 142 FSVDELPVQIHITIYDWDIVWKSAVLGSVTVTVENEGHTGAVWYTLDSPSGQVCLHIKTI 201

Query: 127 KLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIE 186
           KLPVNA   +NGYAGAN RRR SLDK   TVVHQKPG LQTIF LLPDE VE S+SC +E
Sbjct: 202 KLPVNAGSPVNGYAGANPRRRISLDKPELTVVHQKPGALQTIFELLPDEIVEHSFSCALE 261

Query: 187 RSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAG 246
           RSFLYHGRMYVS+WHICFHSN FS+QMKV+IP+GDIDEI+R+QHAFINPA+TIILRMGAG
Sbjct: 262 RSFLYHGRMYVSSWHICFHSNIFSKQMKVVIPLGDIDEIRRTQHAFINPAVTIILRMGAG 321

Query: 247 GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           GHGVPPLGSPDGRVRYKFASFWNRNH +R LQR+  N+  MLEAEKK ++
Sbjct: 322 GHGVPPLGSPDGRVRYKFASFWNRNHVVRALQRSVNNFREMLEAEKKEKA 371

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519666|ref|XP_003528491.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 250/294 (85%), Positives = 262/294 (89%), Gaps = 2/294 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q + AYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 63  MGQSKVDSQASLAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 122

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 123 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 182

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           LHIKTIKL  NASR+ NGY GAN RRR   L+ QGPTVVHQKPGPLQTIF L PDE V+ 
Sbjct: 183 LHIKTIKLSGNASRI-NGYGGANPRRRMPPLESQGPTVVHQKPGPLQTIFGLHPDEVVDH 241

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 242 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 301

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK 293
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHALR LQR AKN+H MLEAEKK
Sbjct: 302 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHALRNLQRAAKNFHEMLEAEKK 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297820804|ref|XP_002878285.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297324123|gb|EFH54544.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 237/294 (80%), Positives = 262/294 (89%), Gaps = 1/294 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD QTN+AY+IK+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 71  QMRGDTQTNAAYIIKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 130

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELPV+I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 131 EEFNFPTDELPVKISVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 190

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 191 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 249

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 250 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 309

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKK R+
Sbjct: 310 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERA 363

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331873|ref|NP_191525.2| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana] gi|17065130|gb|AAL32719.1| putative protein [Arabidopsis thaliana] gi|30725388|gb|AAP37716.1| At3g59660 [Arabidopsis thaliana] gi|332646431|gb|AEE79952.1| C2 domain and GRAM domain-containing protein [Arabidopsis thaliana]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 234/294 (79%), Positives = 260/294 (88%), Gaps = 1/294 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWG
Sbjct: 70  HLRGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWG 129

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+
Sbjct: 130 EEFNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLN 189

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           I  IKLPVNA R + GYAGA  RRR +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYS
Sbjct: 190 INAIKLPVNAPRAVTGYAGA-GRRRVTLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYS 248

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILR
Sbjct: 249 CALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILR 308

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
           MGAGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKK R+
Sbjct: 309 MGAGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERA 362

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500100|ref|XP_003518872.1| PREDICTED: C2 and GRAM domain-containing protein At1g03370-like [Glycine max]

 Score =  512 bits (1319), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/294 (84%), Positives = 262/294 (89%), Gaps = 2/294 (0%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPM 60
           M Q K D Q +SAYLIKLELLAAKNL+GANLNGTSDPYAIITCG+EKRFSSMVPGSR PM
Sbjct: 61  MGQSKVDSQASSAYLIKLELLAAKNLVGANLNGTSDPYAIITCGNEKRFSSMVPGSRNPM 120

Query: 61  WGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
           WGEEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVC
Sbjct: 121 WGEEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVC 180

Query: 121 LHIKTIKLPVNASRVMNGYAGANARRR-ASLDKQGPTVVHQKPGPLQTIFNLLPDEFVEL 179
           L IKTIKL  NASR+ NGY GAN RRR   L++Q PTVVHQKPGPLQTIF+L PDE V+ 
Sbjct: 181 LLIKTIKLSGNASRI-NGYGGANPRRRMPPLERQWPTVVHQKPGPLQTIFDLHPDEVVDH 239

Query: 180 SYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITI 239
           SYSC +ERSFLYHGRMYVSAWHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITI
Sbjct: 240 SYSCALERSFLYHGRMYVSAWHICFHSNVFSKQMKVVIPFEDIDEIRRSQHAFINPAITI 299

Query: 240 ILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK 293
           ILRMGAGGHGVPPLGSPDGRVRY FASFWNRNHA R LQR AKN+H MLEAEKK
Sbjct: 300 ILRMGAGGHGVPPLGSPDGRVRYMFASFWNRNHAFRNLQRAAKNFHEMLEAEKK 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475567|ref|XP_003608069.1| GRAM domain-containing protein [Medicago truncatula] gi|355509124|gb|AES90266.1| GRAM domain-containing protein [Medicago truncatula]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 241/291 (82%), Positives = 256/291 (87%), Gaps = 1/291 (0%)

Query: 3   QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG 62
           Q +GD Q  SAYLIKLELLAAKNLI ANLNGTSDPY IITCG+EKRFSSMVPGSR PMWG
Sbjct: 63  QSRGDSQAGSAYLIKLELLAAKNLIAANLNGTSDPYTIITCGNEKRFSSMVPGSRNPMWG 122

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLH 122
           EEFNFSVDELPVQI VTIYDWDIIWKS VLGSV V VESEGQTGAVW+TLDSPSGQVCLH
Sbjct: 123 EEFNFSVDELPVQINVTIYDWDIIWKSAVLGSVTVPVESEGQTGAVWHTLDSPSGQVCLH 182

Query: 123 IKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYS 182
           IKT K+  N++R+ NGY GAN RRR  L+KQ PTVVHQKPGPLQTIF L PDE V+ SYS
Sbjct: 183 IKTEKMSANSARI-NGYGGANTRRRIPLEKQEPTVVHQKPGPLQTIFELHPDEVVDHSYS 241

Query: 183 CVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR 242
           C +ERSFLYHGRMYVS WHICFHSN FS+QMKV+IP  DIDEI+RSQHAFINPAITIILR
Sbjct: 242 CALERSFLYHGRMYVSTWHICFHSNVFSKQMKVLIPFEDIDEIRRSQHAFINPAITIILR 301

Query: 243 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKK 293
           MGAGGHGVPPLGSPDGRVRYKFASFWNRNHA+R LQR  KN+  MLE EKK
Sbjct: 302 MGAGGHGVPPLGSPDGRVRYKFASFWNRNHAVRSLQRAVKNFREMLETEKK 352

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2097578	594	AT3G59660 "AT3G59660" [Arabido	0.923	0.489	0.773	9.9e-126
UNIPROTKB|Q5Z6I4	1037	OSJNBa0055N24.36 "Putative Osn	0.879	0.267	0.268	1.1e-20
UNIPROTKB|Q66VB0	1086	Os06g0607900 "Os06g0607900 pro	0.828	0.240	0.266	4.4e-18
TAIR|locus:2157707	1027	AT5G50170 "AT5G50170" [Arabido	0.339	0.104	0.315	4.1e-12
UNIPROTKB|Q69V64	354	P0556B08.10 "C2 domain-contain	0.365	0.324	0.347	3.8e-09
DICTYBASE|DDB_G0284461	623	DDB_G0284461 "leucine-rich rep	0.355	0.179	0.280	6.5e-09
UNIPROTKB|F1NF56	657	RASA4 "Uncharacterized protein	0.307	0.147	0.31	1.6e-08
DICTYBASE|DDB_G0272092	986	DDB_G0272092 "protein kinase,	0.342	0.109	0.305	1.7e-07
UNIPROTKB|F1N4Y6	793	RASA4 "Uncharacterized protein	0.330	0.131	0.305	2.1e-07
TAIR|locus:2205625	598	VAD1 "VASCULAR ASSOCIATED DEAT	0.4	0.210	0.296	5.2e-07

TAIR|locus:2097578 AT3G59660 "AT3G59660" [Arabidopsis thaliana (taxid:3702)]

 Score = 1235 (439.8 bits), Expect = 9.9e-126, P = 9.9e-126
 Identities = 226/292 (77%), Positives = 252/292 (86%)

Query:     5 KGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE 64
             +GD QTN+AY++K+ELLAAKNLIGANLNGTSDPYAI+ CGSEKRFSSMVPGSR PMWGEE
Sbjct:    72 RGDTQTNAAYIVKVELLAAKNLIGANLNGTSDPYAIVNCGSEKRFSSMVPGSRNPMWGEE 131

Query:    65 FNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
             FNF  DELP +I VTI+DWDIIWKSTVLGSV + VE EGQTG VW++LDSPSGQVCL+I 
Sbjct:   132 FNFPTDELPAKINVTIHDWDIIWKSTVLGSVTINVEREGQTGPVWHSLDSPSGQVCLNIN 191

Query:   125 TIKLPVNASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCV 184
              IKLPVNA R +            +LD+QGPT+VHQKPGPLQTIF+LLPDE VE SYSC 
Sbjct:   192 AIKLPVNAPRAVTGYAGAGRRRV-TLDQQGPTIVHQKPGPLQTIFDLLPDEVVEHSYSCA 250

Query:   185 IERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMG 244
             +ERSFLYHGRMYVSAWHICFHSN FS+QMKV++P+GDIDEI+RSQHA INPAITIILRMG
Sbjct:   251 LERSFLYHGRMYVSAWHICFHSNVFSKQMKVVVPLGDIDEIRRSQHALINPAITIILRMG 310

Query:   245 AGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVRS 296
             AGGHGVPPLG+PDGRVRYKFASFWNRNH L+ LQR   NYH MLE EKK R+
Sbjct:   311 AGGHGVPPLGTPDGRVRYKFASFWNRNHTLKALQRAVNNYHAMLEVEKKERA 362

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

UNIPROTKB|Q5Z6I4 OSJNBa0055N24.36 "Putative Osnop" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 256 (95.2 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 80/298 (26%), Positives = 141/298 (47%)

Query:    12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
             + +L+ + L+   NL     +G SDPY + TC  + + SS+   +  P W E F F   E
Sbjct:   554 NGWLLTVALIDGTNLAATKSSGYSDPYVVFTCNGKTKTSSIKFHTLEPRWNEIFEFDAME 613

Query:    72 LPVQII-VTIYDWDIIWKSTV-LGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIK 127
              P  ++ + +YD+D  +     LG   V  ++S   +   +W  L     Q C     ++
Sbjct:   614 DPPSVMKINVYDFDGPFDEVESLGHAEVNFLKSNLSELSDIWIPLKGKLAQACQSKLHLR 673

Query:   128 LPVNASRVMXXXXXXXXXXXXSLDKQ-GPTVVHQKP---GPLQTIFNLLPDEFVELSYSC 183
             + +N SR               ++K+ G  +  + P      Q IF+L P+EF+   ++C
Sbjct:   674 IILNNSR----GTEVMKDYLDKMEKEVGKKIAVRSPHTNSAFQKIFSLPPEEFLINDFTC 729

Query:   184 VIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQ---RSQHAFINPAITII 240
              ++R  L  GR+++S   I F++N F  + K      DI++IQ    + ++  +P++ II
Sbjct:   730 HLKRKMLTQGRLFLSPRIIGFYTNLFGHKTKFFFLWEDIEDIQVMPATLYSMGSPSLLII 789

Query:   241 LRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVR 295
             L  G G    HG   L + +GR+++ F SF + N A + +    K     L  E+KV+
Sbjct:   790 LHKGRGMDARHGAKQLDN-EGRLKFHFQSFVSFNVAHKTIMALWKA--RSLTPEQKVQ 844

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

UNIPROTKB|Q66VB0 Os06g0607900 "Os06g0607900 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 232 (86.7 bits), Expect = 4.4e-18, P = 4.4e-18
 Identities = 72/270 (26%), Positives = 126/270 (46%)

Query:    14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF-SVDEL 72
             +L+ + L+    +  +N     D YA+ TC ++++ SS+   +  P W E + F ++D+ 
Sbjct:   604 WLMTVALIEGTGITNSNSKELFDMYAVFTCNAKRKTSSVKFQTSEPKWNEIYEFDAMDDP 663

Query:    73 PVQIIVTIYDWDIIWKSTVLGSVIVT-VESE-GQTGAVWYTLDSPSGQVCLHIKTIKLPV 130
             P ++ V I+D +  +  + +G   V  ++S       VW  L+    Q       +++ +
Sbjct:   664 PSRMDVAIHDANGPFDQSPIGHAEVNFLKSNLSDLTDVWLPLEGKCDQTSNPKIHLRIFL 723

Query:   131 NASRVMXXXXXXXXXXXXSLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFL 190
             N SR               + K+      Q     + +FNL P+EF+   ++C ++R   
Sbjct:   724 NNSRGTEVVMNYLAKMRKEVGKKINLRSAQTNAAFRKLFNLPPEEFLIDDFTCHLKRKMP 783

Query:   191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI--NPAITIILRMGAG-- 246
               GR++ S   I F+SN F  + K      D+D+IQ         +P++TIILR G G  
Sbjct:   784 LQGRLFFSPRIIGFYSNIFGHKTKFFFLWDDVDDIQVIPPTLSIGSPSLTIILRKGRGLE 843

Query:   247 -GHGVPPLGSPDGRVRYKFASFWNRNHALR 275
               HG      P+GR++Y F SF + N A R
Sbjct:   844 AKHGAKGT-DPNGRLKYYFQSFVSFNDAHR 872

GO:0010152 "pollen maturation" evidence=IMP

TAIR|locus:2157707 AT5G50170 "AT5G50170" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
 Identities = 36/114 (31%), Positives = 56/114 (49%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             QK    Q +F L  +EF+   Y+C ++R     G++++SA  + F+SN F  + K     
Sbjct:   689 QKNSAFQKLFGLPHEEFLLKEYTCYLKRKLPVQGKLFLSARIVAFYSNVFGHKTKFYFLW 748

Query:   220 GDIDEIQRSQHAFIN---PAITIILRMGAG---GHGVPPLGSPDGRVRYKFASF 267
              DID+IQ     F +   P + IIL+   G    HG       +GR+ + F SF
Sbjct:   749 EDIDDIQVLPPTFASLGSPLLLIILKKNRGLDAKHGAKSQDD-EGRLSFYFQSF 801

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q69V64 P0556B08.10 "C2 domain-containing protein-like" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 159 (61.0 bits), Expect = 3.8e-09, P = 3.8e-09
 Identities = 42/121 (34%), Positives = 63/121 (52%)

Query:   160 QKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPI 219
             Q     + +FNL P+EF+   ++C ++R     GR++ S   I F+SN F  + K     
Sbjct:    21 QTNAAFRKLFNLPPEEFLIDDFTCHLKRKMPLQGRLFFSPRIIGFYSNIFGHKTKFFFLW 80

Query:   220 GDIDEIQRSQHAFI--NPAITIILRMGAG---GHGVPPLGSPDGRVRYKFASFWNRNHAL 274
              D+D+IQ         +P++TIILR G G    HG      P+GR++Y F SF + N A 
Sbjct:    81 DDVDDIQVIPPTLSIGSPSLTIILRKGRGLEAKHGAKGT-DPNGRLKYYFQSFVSFNDAH 139

Query:   275 R 275
             R
Sbjct:   140 R 140

GO:0010152 "pollen maturation" evidence=IMP

DICTYBASE|DDB_G0284461 DDB_G0284461 "leucine-rich repeat-containing protein (LRR)" [Dictyostelium discoideum (taxid:44689)]

 Score = 161 (61.7 bits), Expect = 6.5e-09, P = 6.5e-09
 Identities = 34/121 (28%), Positives = 63/121 (52%)

Query:    15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
             ++++ ++  ++L+ ++ NG SD YA +  G +K+ + ++  S  P WGE F   +  L  
Sbjct:     3 ILQVNVIEGRDLVASDSNGFSDCYATLILGQQKKKTKIIKKSLNPKWGETFLMRISPLDE 62

Query:    75 QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS-PS-------GQVCLHIKTI 126
              + V + DWD       +G   + + S   T AVWYTL + P+       G+VC+  + +
Sbjct:    63 TLHVLLQDWDQFSSDDFMGECFIDINSLDDT-AVWYTLSTRPNKPDDFVKGEVCIKARVV 121

Query:   127 K 127
             K
Sbjct:   122 K 122

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NF56 RASA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 158 (60.7 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 31/100 (31%), Positives = 57/100 (57%)

Query:    16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
             ++  +L A++L   + NG SDP+  ++   + + S++V  S YP W E F F + + P +
Sbjct:   136 LRCTVLEARDLAKKDRNGASDPFVCVSYNGKTQESTVVKKSCYPRWNEAFEFELPDPPAE 195

Query:    76 -IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
              + V ++DWD++ K+  LG V+V+V+     G    W+ L
Sbjct:   196 KLCVEVWDWDLVSKNDFLGKVVVSVQGLQAAGHQEGWFRL 235

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

DICTYBASE|DDB_G0272092 DDB_G0272092 "protein kinase, TKL group" [Dictyostelium discoideum (taxid:44689)]

 Score = 151 (58.2 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 37/121 (30%), Positives = 62/121 (51%)

Query:    16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEE--FNFSVDELP 73
             +++E+L  +NL+  + NG SDPY ++  G +K+ +  +  + +P W  +  F F +D   
Sbjct:     8 VRIEVLEGRNLVPMDSNGMSDPYGVVIVGDKKKKTKAIKHTLFPKWESDNCFEFDIDVNL 67

Query:    74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV----WYTL------DSPSGQVCLHI 123
             + I V +YDWD       +G   + V S+ Q   V    WYTL      D  SG++ L I
Sbjct:    68 LAITVEVYDWDRFSSDDRMGLTNIPV-SQIQEYIVDTTKWYTLQPMKPNDKVSGEIKLKI 126

Query:   124 K 124
             +
Sbjct:   127 R 127

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1N4Y6 RASA4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 2.1e-07, P = 2.1e-07
 Identities = 33/108 (30%), Positives = 57/108 (52%)

Query:     8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
             P T +  L +  +L A++L   + NG SDP+  +      + +S+V  S YP W E F F
Sbjct:   128 PGTRACRL-RCSVLEARDLAPKDRNGASDPFVRVRYNGRTQETSIVKKSCYPRWNETFEF 186

Query:    68 SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
              ++E   +++ V  +DWD++ ++  LG V+V V+     Q    W+ L
Sbjct:   187 ELEEGAAEVLCVEAWDWDLVSRNDFLGKVVVNVQRLWAAQREEGWFRL 234

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

TAIR|locus:2205625 VAD1 "VASCULAR ASSOCIATED DEATH1" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 5.2e-07, P = 5.2e-07
 Identities = 43/145 (29%), Positives = 71/145 (48%)

Query:   151 DKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFS 210
             D Q   +   K    + +F L  DE +   ++C  + S L  G MY+   +ICF+SN F 
Sbjct:    60 DNQSEVI--SKSEEYRQLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFG 117

Query:   211 RQMKVIIPIGDIDEIQRSQHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN 269
              + K IIP  +I  ++R++ A I P AI I+    AGG             +Y FASF +
Sbjct:   118 YETKKIIPFAEISCVKRAKTAGIFPNAIEIL----AGGK------------KYFFASFLS 161

Query:   270 RNHALRQLQRTAKNYHTMLEAEKKV 294
             R+ A + +      Y + +++E ++
Sbjct:   162 RDEAFKLIHDGWLEYGSAVKSEGEI 186

GO:0005634 "nucleus" evidence=ISM

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0043069 "negative regulation of programmed cell death" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01420059 hypothetical protein (590 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd13219	161	cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-conta	2e-76
cd00030	102	cd00030, C2, C2 domain	4e-22
cd13220	111	cd13220, PH-GRAM_GRAMDC, GRAM domain-containing pr	2e-19
smart00568	60	smart00568, GRAM, domain in glucosyltransferases,	9e-17
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	4e-16
pfam00168	85	pfam00168, C2, C2 domain	1e-15
smart00239	101	smart00239, C2, Protein kinase C conserved region	9e-15
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	6e-13
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-12
pfam02893	60	pfam02893, GRAM, GRAM domain	5e-12
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	3e-11
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-10
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	8e-10
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	6e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	1e-08
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-08
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	8e-08
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-07
cd13216	117	cd13216, PH-GRAM2_AGT26, Autophagy-related protein	6e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	7e-07
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	7e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	9e-06
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	1e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-05
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-05
cd10570	94	cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltran	3e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	5e-05
cd13349	135	cd13349, PH-GRAM1_TBC1D8, TBC1 domain family membe	5e-05
cd13217	100	cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and	1e-04
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	2e-04
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	2e-04
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-04
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-04
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-04
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	5e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	5e-04
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	5e-04
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	7e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	0.001
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	0.001
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.002
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	0.002
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	0.002
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	0.003
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	0.003
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	0.003
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	0.003

>gnl|CDD|241373 cd13219, PH-GRAM_C2-GRAM, C2 and GRAM domain-containing protein Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score =  230 bits (589), Expect = 2e-76
 Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 6/157 (3%)

Query: 144 ARRRASLDKQGPTVVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHIC 203
           ++    + K+      QK    Q +F L P+EF+   ++C ++R F   GR+++SA  I 
Sbjct: 1   SKMEKEVGKKINLRSPQKNSAFQKLFGLPPEEFLINDFTCALKRKFPLQGRLFLSARIIG 60

Query: 204 FHSNAFSRQMKVIIPIGDIDEIQRSQHAF--INPAITIILRMG---AGGHGVPPLGSPDG 258
           F+SN F  + K      DI+EIQ S  +    +P+I IILR G      HG  P   P+G
Sbjct: 61  FYSNLFGHKTKFFFLWEDIEEIQVSPPSLSVGSPSIVIILRKGRGLDARHGAKP-QDPEG 119

Query: 259 RVRYKFASFWNRNHALRQLQRTAKNYHTMLEAEKKVR 295
           R+++ F SF + NHA R +    KN     E +K++ 
Sbjct: 120 RLKFHFQSFVSFNHAFRTIMALWKNRSLSPEQKKQIV 156

C2GRAM contains two N-terminal C2 domains followed by a single PH-GRAM domain. Since it contains both of these domains it is assumed that this gene cross-links both calcium and phosphoinositide signaling pathways. In general he C2 domain is involved in binding phospholipids in a calcium dependent manner or calcium independent manner. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 161

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 88.7 bits (220), Expect = 4e-22
 Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 5/102 (4%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           +++ ++ A+NL   +LNG SDPY  ++ G +++F + +V  +  P+W E F F V +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 75  Q-IIVTIYDWDIIWKSTVLGSVIVTVES---EGQTGAVWYTL 112
             + V ++D D   K   LG V + +      G+ G +W  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|241374 cd13220, PH-GRAM_GRAMDC, GRAM domain-containing protein (GRAMDC) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 81.4 bits (202), Expect = 2e-19
 Identities = 38/118 (32%), Positives = 56/118 (47%), Gaps = 17/118 (14%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
            +L  DE +   YSC ++R  L  GR+Y+S  HICF+SN F  + K++IP  DI  I++ 
Sbjct: 4   KSLPDDERLIDDYSCALQRDILLQGRLYISENHICFYSNIFGWETKLVIPFKDITSIEKK 63

Query: 229 QHAFINP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKNYH 285
           + A + P AI I                     +Y FASF +R+     + R   N  
Sbjct: 64  KTAGLFPNAIQIETLTE----------------KYFFASFLSRDSTFDLITRVWSNAL 105

The GRAMDC proteins are membrane proteins. Nothing is known about its function. Members include: GRAMDC1A, GRAMDC1B, GRAMDC1C, GRAMDC2, GRAMDC3, GRAMDC4, and GRAMDC-like proteins. All of the members, except for GRAMDC4 are included in this hierarchy. Each contains a single PH-GRAM domain at their N-terminus. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 111

>gnl|CDD|214725 smart00568, GRAM, domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

 Score = 72.6 bits (179), Expect = 9e-17
 Identities = 22/60 (36%), Positives = 35/60 (58%)

Query: 170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
            L  +E +   YSC + R+    GR+Y+S + +CF SN   +  KV+IP+ DI  I++S 
Sbjct: 1   KLPEEEKLIADYSCYLSRTGPVQGRLYISNYRLCFRSNLPGKLTKVVIPLADITRIEKST 60

Length = 60

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           +L A++L   + NGTSDP+  +    +   +S+V  S YP W E F F + E     + V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
            ++DWD++ K+  LG V+ ++++  Q      W+ L
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRL 101

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 26/85 (30%), Positives = 47/85 (55%), Gaps = 4/85 (4%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDEL 72
          +++ +++AKNL   +LNG SDPY  ++ G +K+    + +V  +  P+W E F F V   
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 73 PVQ-IIVTIYDWDIIWKSTVLGSVI 96
           +  + + +YD+D   K   +G V 
Sbjct: 61 ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 68.7 bits (168), Expect = 9e-15
 Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEFNFSVDE 71
            + +++++A+NL   +  G SDPY  ++   + +    + +V  +  P+W E F F V  
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 72  LPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES 101
             +  + + +YD D   +   +G V + +  
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSD 91

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)

Query: 15  LIKLELLAAKNLIGANLN------GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS 68
           ++++ ++ A++L+  +        G SDPY I+  G++   S ++  +  P W E +   
Sbjct: 2   VLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAV 61

Query: 69  VDELP-VQIIVTIYDWDIIWKSTVLGSV---IVTVESEGQTGAVWYTL-DSPSGQVCLHI 123
           VDE+P  ++ + ++D D   K   LG +   + +VE +G     W  L D  SG++ L +
Sbjct: 62  VDEVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDE-WLPLEDVKSGRLHLKL 119

Query: 124 KT 125
           + 
Sbjct: 120 EW 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 63.4 bits (154), Expect = 1e-12
 Identities = 37/125 (29%), Positives = 59/125 (47%), Gaps = 17/125 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ LI  +  GTSDPY  +  G  K+ +  +P +  P+W E+F+F       +
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V ++D D   KS +           LG  I+ V +      VWY L+      + SG 
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGA 122

Query: 119 VCLHI 123
           + LHI
Sbjct: 123 IRLHI 127

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|217271 pfam02893, GRAM, GRAM domain

 Score = 59.9 bits (146), Expect = 5e-12
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 171 LLPDEFVELSYSCVIERSF-LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQ 229
           L P+E +   YSC ++R      GR+Y++   +CF S+ F     ++IP+ DI+ +++ +
Sbjct: 1   LPPEEKLIADYSCYLQRPISPVQGRLYLTNNRLCFRSDKFGDLTVLVIPLADIERVEKEK 60

The GRAM domain is found in in glucosyltransferases, myotubularins and other putative membrane-associated proteins. Length = 60

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 26/108 (24%), Positives = 49/108 (45%), Gaps = 10/108 (9%)

Query: 16  IKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           +++ ++ AK+L   +    G SDPYAI++ G+++  +  +P +  P W     F +    
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 74  VQII-VTIYDWDIIWKSTVLGSV------IVTVESEGQTGAVWYTLDS 114
            Q++ + ++D D       LG        +      GQ+   W TL S
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDK-WITLKS 109

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 56.8 bits (138), Expect = 2e-10
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 15/100 (15%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPV 74
           + +++++A+NL  A+ NG SDP+       EK F +  +  +  P+W E F     E+PV
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESF-----EVPV 55

Query: 75  ------QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQT 105
                  + V +YDWD   K  +LGS  +    +E E  T
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETT 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 3/107 (2%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-V 78
           L+  KNL   + NG SDPY     G+EK  S +   +  P W E+F+  + +   QI+ +
Sbjct: 6   LVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEI 65

Query: 79  TIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQVCLHI 123
            ++D D   K   +G   + +      QT ++   L+   G + L +
Sbjct: 66  EVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDGEGSLLLLL 112

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 23/114 (20%), Positives = 44/114 (38%), Gaps = 28/114 (24%)

Query: 21  LAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---- 72
           LA K+      NGT DP+A +T      ++ + + +   +  P + E F F +       
Sbjct: 11  LALKS------NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYE 64

Query: 73  ------------PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
                         ++ V ++   ++     LG V + ++   Q G+   WY L
Sbjct: 65  KKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL 118

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 1/86 (1%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+K+ ++   NL   +   +SDPY ++T G++K  + ++  +  P+W EE   SV     
Sbjct: 3   LLKVRVVRGTNLAVRDFT-SSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMA 61

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
            + + ++D D   K   +G   + +E
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLE 87

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 51.2 bits (123), Expect = 3e-08
 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGS-RYPMWGEEFNFSVDELPVQ-- 75
            L++AK L   +  G  DPY II C +++R S +  G  R P W E+F F+V E P    
Sbjct: 6   LLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTV-EYPGWGG 64

Query: 76  ---IIVTIYDWDIIWKSTVLGSVIVTVE---SEG 103
              +I+ I D D       +G   + ++    EG
Sbjct: 65  DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEG 98

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 49.9 bits (120), Expect = 8e-08
 Identities = 32/114 (28%), Positives = 63/114 (55%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSE---KRFSSMVPGSRYPMWGEEFNFSV- 69
           + + +L A+NL  ++  G SDPY  ++   G +   K+ +S+  G+  P++ E F+F V 
Sbjct: 16  LTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVP 75

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
            ++L  V +++T+ D D + ++ V+G V++  +S G+    W   L SP   + 
Sbjct: 76  AEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIA 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 14/117 (11%)

Query: 17  KLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV-- 74
           +L +L AKNL      GT DPY  ++    +   +       P WGEEF F  D+ P   
Sbjct: 3   RLRILEAKNLP---SKGTRDPYCTVSLDQVEVARTKTVEKLNPFWGEEFVF--DDPPPDV 57

Query: 75  ---QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS--PSGQVC--LHIK 124
               +     D     +  V+G V ++    GQ    W+ L    P  +V   + ++
Sbjct: 58  TFFTLSFYNKDKRSKDRDIVIGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLR 114

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|241370 cd13216, PH-GRAM2_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 2

 Score = 47.1 bits (113), Expect = 6e-07
 Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 169 FNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRS 228
           F L   E +   Y   ++R    +G++Y+S  + CF S     + K+I+P+ DI+ +++ 
Sbjct: 7   FALPESEKLLAYYYAYLQRVLPVYGKLYISDNYFCFRSLLPGTRTKMILPLKDIENVEKE 66

Query: 229 Q-HAFINPAITIILRMGAGGH 248
           +   F    + I++R    GH
Sbjct: 67  KGFRFGYSGLVIVIR----GH 83

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 27/104 (25%), Positives = 54/104 (51%), Gaps = 11/104 (10%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWG 62
           P  N    I + ++ A+NL   ++NGTSDPY  +         EK+ + +   +  P++ 
Sbjct: 12  PTANR---ITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFN 68

Query: 63  EEFNFSV--DEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
           E F F++  + L    +I+T+ D D + ++ ++G + +  +S G
Sbjct: 69  ESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 24/91 (26%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS---MVPGSRYPMWGEEFNFSVDE 71
           L+++ ++ A+NL   + NG SDPY  I  G +K+ +     +P +  P++G+ F      
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLG-KKKINDRDNYIPNTLNPVFGKMFELEA-T 58

Query: 72  LPVQII--VTIYDWDIIWKSTVLGSVIVTVE 100
           LP   I  +++ D+D++    ++G  ++ +E
Sbjct: 59  LPGNSILKISVMDYDLLGSDDLIGETVIDLE 89

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)

Query: 14  YLIKLELLAAKNLIGANLNGTSDPYAIIT-CGSEKRFSS--MVPGSRYPMWGEEFNFSV- 69
           +L  + ++ A+NL   + NG SDPY  +     ++R +    +  +  P W EEF   V 
Sbjct: 1   HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVP 60

Query: 70  DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLDSPSGQVCLHI 123
              P+ I  T++D   + K  + G   + ++      +G    +W  LD   G++ L +
Sbjct: 61  AGEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD-TQGRLLLRV 118

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 1/81 (1%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
           + +A+ L   +  G +DPY II C  E   S +   +  P +  +  F   +    I + 
Sbjct: 9   VHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQ 68

Query: 80  IYDWDIIWKSTVLGSVIVTVE 100
           +++ +++     LG   ++ +
Sbjct: 69  VWNSNLL-CDEFLGQATLSAD 88

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 10   TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFS 68
             NS YL  + L + +NL  ++ NG SDP+  +    +  + + +V  +  P+W EEF   
Sbjct: 1037 ENSGYL-TIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIE 1095

Query: 69   VD-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES 101
            V   +   + + + DWD   K+ +LG+  + +  
Sbjct: 1096 VLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129

Length = 1227

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELP- 73
           +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F   E+P 
Sbjct: 21  ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSF---EVPF 77

Query: 74  -----VQIIVTIYDWDIIWKSTVLGSVIVTVESEG 103
                V +IVT+ D+D I K+  +G V++   + G
Sbjct: 78  EQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATG 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|241306 cd10570, PH-GRAM, Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

 Score = 41.9 bits (99), Expect = 3e-05
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR---SQHAFINPAITIILRMGAGGHG 249
           G +Y++ + + F S       ++ +P+G I  +++   S     +  + I  +       
Sbjct: 19  GTLYLTNYRLYFKSKERDSPTELDVPLGVISRVEKVGGSSSGENSYGLEITCK------- 71

Query: 250 VPPLGSPDGRVRYKFASFWNRNHALRQLQRT 280
                  D R   +FA F   +H+ R +   
Sbjct: 72  -------DMRN-LRFA-FKQEDHSRRDIFEL 93

Myotubularin-related proteins are a subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids. Mutations in this family cause the human neuromuscular disorders myotubular myopathy and type 4B Charcot-Marie-Tooth syndrome. 6 of the 13 MTMRs (MTMRs 5, 9-13) contain naturally occurring substitutions of residues required for catalysis by PTP family enzymes. Although these proteins are predicted to be enzymatically inactive, they are thought to function as antagonists of endogenous phosphatase activity or interaction modules. Most MTMRs contain a N-terminal PH-GRAM domain, a Rac-induced recruitment domain (RID) domain, a PTP domain (which may be active or inactive), a SET-interaction domain, and a C-terminal coiled-coil region. In addition some members contain DENN domain N-terminal to the PH-GRAM domain and FYVE, PDZ, and PH domains C-terminal to the coiled-coil region. The GRAM domain, found in myotubularins, glucosyltransferases, and other putative membrane-associated proteins, is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 94

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 21 LAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
          L A+ L+    +GT+D Y II  G EK  +S+   +  P+W EE +F   ELP
Sbjct: 6  LQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSF---ELP 55

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|241503 cd13349, PH-GRAM1_TBC1D8, TBC1 domain family member 8 (TBC1D8; also called Vascular Rab-GAP/TBC-containing protein) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 42.1 bits (99), Expect = 5e-05
 Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 169 FNLLPDEFVELSYSCVIERSFL-YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR 227
           FN    E +   YSC   +  +   G +Y+S  H+CF+S    +++K++IP  ++ +++R
Sbjct: 19  FNFPEAEKLVTYYSCCCWKGRVPRQGWLYLSINHLCFYSFFLGKELKLVIPWVEVQKLER 78

Query: 228 SQHAFINPAITIILR 242
           + + F+   I +  +
Sbjct: 79  TSNVFMTDTIRVTTQ 93

TBC1D8 may act as a GTPase-activating protein for Rab family protein(s). TBC1D8 contains an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 135

>gnl|CDD|241371 cd13217, PH-GRAM1_TCB1D8_TCB1D9_family, TCB1D8 and TCB1D9 family Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain, repeat 1

 Score = 40.5 bits (95), Expect = 1e-04
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF 232
            +E V        +      G +Y+S  H+CF+S     + K++I   ++ +I++S    
Sbjct: 1   EEELVTSYSCSYWKGKVPRQGWLYLSLNHLCFYSFLLGSESKLVIRWTELTDIEKS---- 56

Query: 233 INPAIT 238
            N  I 
Sbjct: 57  GNTTIK 62

TBC1D8, TBC1D8B, TBC1D9 and TBC1D9B may act as a GTPase-activating proteins for Rab family protein(s). They all contain an N-terminal PH-GRAM domain and a C-terminal Rab-GTPase-TBC (Tre-2, BUB2p, and Cdc16p) domain. This cd contains the first repeat of the PH-GRAM domain. The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins. The GRAM domain is part of a larger motif with a pleckstrin homology (PH) domain fold. Length = 100

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 40.2 bits (94), Expect = 2e-04
 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQI-I 77
           ++  KNL   ++ G+SDPY I+   +E    ++ V  +  P WGEE+      LP     
Sbjct: 6   IVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTV---HLPPGFHT 62

Query: 78  VTIY--DWDIIWKSTVLGSVIVTVE 100
           V+ Y  D D + +  V+G V +T E
Sbjct: 63  VSFYVLDEDTLSRDDVIGKVSLTRE 87

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 23  AKNLIGAN-LNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTI 80
           AKNL   +  N   D Y  +    E+ F +  V  S  P +GE+F F +      +   I
Sbjct: 9   AKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYI 68

Query: 81  YDWDIIWKSTVLGSVIVTVE 100
           YD D++ + +V+G V +  E
Sbjct: 69  YDRDVLRRDSVIGKVAIKKE 88

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 18/91 (19%)

Query: 11  NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSR--------YPMWG 62
            S   +++E+L A+NL+  + NG+SDP+  +       F   VP  +        +P++ 
Sbjct: 13  ASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLF-PDVPTPKTQVKKKTLFPLFD 71

Query: 63  EEFNFSVDELPVQ-------IIVTIYDWDII 86
           E F F+V   P Q       ++ T+ D+D++
Sbjct: 72  ESFEFNVP--PEQCSVEGALLLFTVKDYDLL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 20/78 (25%), Positives = 39/78 (50%)

Query: 20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT 79
          ++ A  L  A++ G SDP+ ++   + +  +  +  +  P W + F F + ++   + VT
Sbjct: 7  VIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVT 66

Query: 80 IYDWDIIWKSTVLGSVIV 97
          +YD D   K   LG V +
Sbjct: 67 VYDEDKDKKPEFLGKVAI 84

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 1/80 (1%)

Query: 24  KNLIGANLNGTSDPYAIITCGSEKRF-SSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD 82
           +NL   +  GTSDPY     G +  + S  +  +  P+W E+F   ++++   + + ++D
Sbjct: 10  RNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFD 69

Query: 83  WDIIWKSTVLGSVIVTVESE 102
           +D       +GS  V + + 
Sbjct: 70  YDRGLTDDFMGSAFVDLSTL 89

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 43/87 (49%), Gaps = 5/87 (5%)

Query: 16 IKLELLAAKNL-IGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDELP 73
          +K+ ++AA++L +    +  +D +  +  GS    + +V  S  P+W  E F F VD+  
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 74 VQ---IIVTIYDWDIIWKSTVLGSVIV 97
          +Q   + + + D D    +  +G V +
Sbjct: 61 LQDEPLQIRVMDHDTYSANDAIGKVYI 87

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 12/82 (14%)

Query: 23 AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSV-----DELPVQII 77
          AKNL  A       PY  +T G   + S +   +  P+W E F F V      EL +++ 
Sbjct: 9  AKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVK 68

Query: 78 VTIYDWDIIWKSTVLGSVIVTV 99
              D         LGS+ + +
Sbjct: 69 ----D---DKTGKSLGSLTLPL 83

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 10/106 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + +E+  AKNLI  + NG SDPY  +          K+ +  +  +  P+W E F F + 
Sbjct: 15  LTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLK 74

Query: 70  -DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
             +   ++ + ++DWD   ++  +GS+   V SE     V  WY L
Sbjct: 75  PADKDRRLSIEVWDWDRTTRNDFMGSLSFGV-SELIKMPVDGWYKL 119

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 10/87 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRY---PMWGEEFNFSV--DEL 72
           ++ A +L   ++ GTSDPY  +    +K+  F + V   R    P++ E F F V   EL
Sbjct: 22  IIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKV--HRKTLNPVFNETFTFKVPYSEL 79

Query: 73  PVQIIV-TIYDWDIIWKSTVLGSVIVT 98
             + +V ++YD+D   K  ++G V V 
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVP 106

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 9/86 (10%)

Query: 14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGE----EFNFSV 69
          + +++ ++ A+ L+G N+    DP   +  G +K+++S+  G+  P + E     F+ S 
Sbjct: 4  FQVRVRVIEARQLVGGNI----DPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESP 59

Query: 70 DELPVQIIV-TIYDWDIIWKSTVLGS 94
          DEL  +II  ++YD   +   T++GS
Sbjct: 60 DELFDKIIKISVYDSRSLRSDTLIGS 85

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 28/111 (25%), Positives = 45/111 (40%), Gaps = 20/111 (18%)

Query: 23  AKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQII-VTIY 81
            ++L   N NG SDPY  ++ GS++  + +V  +  P W     F V +L   ++ +T++
Sbjct: 24  GRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF 83

Query: 82  DWDIIWKSTVLG------SVIVTVESEG-------------QTGAVWYTLD 113
           D D       LG      + I+    E               TG V   LD
Sbjct: 84  DRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLD 134

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 20/94 (21%), Positives = 44/94 (46%), Gaps = 8/94 (8%)

Query: 25  NLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DELPVQ-I 76
           NL   + NG SDP+  +    +     K  + +   +  P + EEF + +   +L  + +
Sbjct: 24  NLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTL 83

Query: 77  IVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY 110
            +T++D DI   +  +G + + + ++G+    W 
Sbjct: 84  EITVWDKDIGKSNDYIGGLQLGINAKGERLRHWL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 8/103 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV---- 74
           E++ A++L+  +  G+S  Y  +    +K+ +   P    P+W E+  F+V +       
Sbjct: 5   EVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNL 64

Query: 75  QIIVTIY-DWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLD 113
            + V +Y D     + + LG V +   +     +     Y L+
Sbjct: 65  VLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLE 107

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 37.4 bits (87), Expect = 0.002
 Identities = 24/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSV--DEL 72
           +L A++L   +++G +DPY  +          K+ + +   +  P++ E F F +  +EL
Sbjct: 21  VLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80

Query: 73  P-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQV 119
             + +   + D D + K+ V+G +++  ++ G  G  W  + + P  Q+
Sbjct: 81  EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQI 129

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 29/115 (25%), Positives = 55/115 (47%), Gaps = 13/115 (11%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFN 66
           +A  + L ++ A+NL   ++ G SDPY  ++   E     K+ +S+   +  P + E   
Sbjct: 12  TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALV 71

Query: 67  F-----SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSP 115
           F     +VD   V +I+ + D+D +  + ++G   V   ++GQ    W   L +P
Sbjct: 72  FDVPPENVDN--VSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANP 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 37.4 bits (87), Expect = 0.003
 Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 9/47 (19%)

Query: 13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYP 59
           +++K+ ++ AK L+  ++NG SDPY ++          +VP SR  
Sbjct: 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCML---------GIVPASRER 64

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSS-MVPGSRYPMWGEEFNFSVDELPV 74
          ++L +L A  L   +L    DP+A+IT    +  S+ +   +  P W E F+ +V     
Sbjct: 2  VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP--- 58

Query: 75 QIIVTIYDWD 84
            I+TI  +D
Sbjct: 59 SSIITIQVFD 68

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 36.5 bits (85), Expect = 0.003
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 15 LIKLELLAAKNLIGANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNFSVDE 71
          L+ + +L A N+   +L  T D Y  +   T   EK+ +  +  S  P+W E F F +  
Sbjct: 1  LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 72 LPVQII--VTIYDWDIIWKSTVLGSVIVTV 99
            V+ +  +T+ D D +     LG+V+  V
Sbjct: 61 -QVKNVLELTVMDEDYV-MDDHLGTVLFDV 88

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.89
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.87
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.86
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.85
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.85
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.84
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.84
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.84
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.84
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.84
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.83
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.83
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.83
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.82
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.82
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.82
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.82
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.82
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.82
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.81
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.81
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.81
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.81
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.8
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.8
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.8
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.79
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.79
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.79
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.79
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.79
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.79
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.79
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.79
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.78
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.78
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.78
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.78
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.78
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.77
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.77
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.77
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.77
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.77
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.77
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.76
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.76
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.76
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.76
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.76
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.75
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.75
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.75
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.75
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.75
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.74
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.74
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.74
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.74
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.73
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.73
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.73
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.72
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.72
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.72
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.72
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.72
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.71
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.71
KOG1032	590	consensus Uncharacterized conserved protein, conta	99.71
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.7
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.7
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.69
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.69
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.69
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.69
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.69
PF02893	69	GRAM: GRAM domain; InterPro: IPR004182 The GRAM do	99.68
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.68
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.67
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.67
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.66
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.65
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.64
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.64
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.64
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.63
PLN03008	868	Phospholipase D delta	99.62
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.62
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.6
smart00568	61	GRAM domain in glucosyltransferases, myotubularins	99.56
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.56
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.51
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.39
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.36
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.36
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.35
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.29
PLN02223	537	phosphoinositide phospholipase C	99.28
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.2
PLN02952	599	phosphoinositide phospholipase C	99.19
PLN02270	808	phospholipase D alpha	99.14
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.13
PLN02230	598	phosphoinositide phospholipase C 4	99.13
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.12
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.11
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	99.08
PLN02222	581	phosphoinositide phospholipase C 2	99.07
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.06
PLN02228	567	Phosphoinositide phospholipase C	99.04
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.87
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.73
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.68
KOG1032	590	consensus Uncharacterized conserved protein, conta	98.61
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.58
KOG4347	671	consensus GTPase-activating protein VRP [General f	98.57
PLN02352	758	phospholipase D epsilon	98.48
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.39
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.35
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.26
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.14
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.88
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.83
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.77
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.75
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.74
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.73
PLN02964	644	phosphatidylserine decarboxylase	97.68
PF14844	106	PH_BEACH: PH domain associated with Beige/BEACH; P	97.33
PF14470	96	bPH_3: Bacterial PH domain	97.3
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.39
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.3
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.29
KOG3837	523	consensus Uncharacterized conserved protein, conta	95.99
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	95.89
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	95.75
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	95.51
PF15627	156	CEP76-C2: CEP76 C2 domain	95.42
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	95.41
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.29
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	95.09
KOG1452	442	consensus Predicted Rho GTPase-activating protein	94.64
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	94.59
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.85
PF11605	89	Vps36_ESCRT-II: Vacuolar protein sorting protein 3	93.52
PF06115	118	DUF956: Domain of unknown function (DUF956); Inter	92.38
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	91.96
cd01201	108	Neurobeachin Neurobeachin Pleckstrin homology-like	91.88
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	91.87
PF08567	79	TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom	90.68
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	88.65
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	88.62
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	88.11
COG4687	122	Uncharacterized protein conserved in bacteria [Fun	86.96
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	86.12
PF07289	339	DUF1448: Protein of unknown function (DUF1448); In	85.55
PF11696	642	DUF3292: Protein of unknown function (DUF3292); In	82.7
smart00683	55	DM16 Repeats in sea squirt COS41.4, worm R01H10.6,	82.51

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.89  E-value=2.1e-22  Score=161.25  Aligned_cols=112  Identities=19%  Similarity=0.278  Sum_probs=98.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~   91 (315)
                      .|.|.|+|++|++|+..+ .|++||||++.++....+|+++.+ +.||.|||+|.|.+.+....|.|+|||+|.+++|++
T Consensus         1 ~g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~   79 (121)
T cd04016           1 VGRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDER   79 (121)
T ss_pred             CcEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCce
Confidence            479999999999998888 799999999999999999999876 799999999999997656789999999999999999


Q ss_pred             eEEEEEEccc-C--CCcccEEEEccC-----CCceEEEEEEe
Q 021238           92 LGSVIVTVES-E--GQTGAVWYTLDS-----PSGQVCLHIKT  125 (315)
Q Consensus        92 iG~~~i~l~~-l--~~~~~~w~~L~~-----~~G~i~~~l~~  125 (315)
                      ||++.+++.. +  +...+.|++|.+     +.|+|++++.+
T Consensus        80 iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          80 IAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            9999999964 4  455789999975     34888888764

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.87  E-value=5.5e-21  Score=152.00  Aligned_cols=112  Identities=24%  Similarity=0.358  Sum_probs=101.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|+|+|++|++|+..+..+.+||||+++++....+|+++++++||.|||+|.|.+.+. ...|.|+|||++..+++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            3789999999999999999999999999998889999999999999999999998764 678999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 021238           94 SVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (315)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G~i~~~l~~~  126 (315)
                      ++.++|+++  +.....|++|.+..|++++.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~~~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTHSLELELEDGEGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEEccCCCcEEEEEEEec
Confidence            999999986  455678999998789998887753

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.86  E-value=4e-21  Score=155.27  Aligned_cols=99  Identities=25%  Similarity=0.494  Sum_probs=89.9

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC------CCcEEEEEEEecCCCCCC
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE------LPVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~------~~~~L~~~V~d~d~~~~d   89 (315)
                      ++|+|++|+||++++..|.+||||++.++..+.+|+++++++||.|||+|.|.+..      ....|.|.|||++..++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999999999999999999999889999999999999999999999865      366799999999999899


Q ss_pred             ceeEEEEEEcccCC----CcccEEEEccC
Q 021238           90 TVLGSVIVTVESEG----QTGAVWYTLDS  114 (315)
Q Consensus        90 d~iG~~~i~l~~l~----~~~~~w~~L~~  114 (315)
                      ++||++.++|.++.    .....|++|.+
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~  109 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLES  109 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcC
Confidence            99999999999863    34678999974

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=2.7e-20  Score=149.32  Aligned_cols=112  Identities=22%  Similarity=0.460  Sum_probs=98.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|+|+|++|++|+..|..|.+||||++.++. ...+|+++.+++||.|||+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            3799999999999999999999999999976 567999999999999999999999776788999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-----CceEEEEEEee
Q 021238           94 SVIVTVESE--GQTGAVWYTLDSP-----SGQVCLHIKTI  126 (315)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-----~G~i~~~l~~~  126 (315)
                      .+.+++.++  +.....|++|.++     .|++++.+++.
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEEC
Confidence            999999997  4566789999632     37777777654

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.85  E-value=7.8e-21  Score=156.44  Aligned_cols=113  Identities=24%  Similarity=0.402  Sum_probs=98.3

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~   91 (315)
                      ..|.|+|.|++|.+|..+|+.+++||||++.+++++.+|+++.+++||.|||.|+|.+.++...|+++|||+|.++.|||
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~dD~   83 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSDDF   83 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcccc
Confidence            46899999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEcccCCCcccEEE-EccCCCceEEEEEE
Q 021238           92 LGSVIVTVESEGQTGAVWY-TLDSPSGQVCLHIK  124 (315)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~-~L~~~~G~i~~~l~  124 (315)
                      +|+|+|+|..+-.....|+ ......|....++.
T Consensus        84 mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~  117 (168)
T KOG1030|consen   84 MGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVL  117 (168)
T ss_pred             cceeeeccHHHHHHhhhhccccccCCCcEeeEEE
Confidence            9999999999755555555 22223455444333

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=4.6e-20  Score=149.05  Aligned_cols=112  Identities=24%  Similarity=0.427  Sum_probs=98.9

Q ss_pred             eEEEEEEEEeecCCCCCC--CCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCc
Q 021238           14 YLIKLELLAAKNLIGANL--NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd   90 (315)
                      |.|+|+|++|++|+..+.  .+.+||||++.++....+|++++++.||.|||.|.|.+.+ ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999999998  8999999999999888999999999999999999999976 5778999999999988999


Q ss_pred             eeEEEEEEcccCC-----CcccEEEEccCC--------CceEEEEEEe
Q 021238           91 VLGSVIVTVESEG-----QTGAVWYTLDSP--------SGQVCLHIKT  125 (315)
Q Consensus        91 ~iG~~~i~l~~l~-----~~~~~w~~L~~~--------~G~i~~~l~~  125 (315)
                      +||++.+++.++.     .....|++|.++        .|+++++++|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            9999999999863     335789999754        5777776654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=3e-20  Score=149.75  Aligned_cols=99  Identities=21%  Similarity=0.359  Sum_probs=90.1

Q ss_pred             EEEEEEEeec---CCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC-----
Q 021238           16 IKLELLAAKN---LIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW-----   87 (315)
Q Consensus        16 L~V~Ii~A~~---L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~-----   87 (315)
                      |.|+|++|++   |..+|..|.+||||+++++..+.||+++.+++||.|||+|.|.+.+....|.|+|||++..+     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            7899999999   88899999999999999999999999999999999999999999776779999999999874     


Q ss_pred             -CCceeEEEEEEcccCC--CcccEEEEccC
Q 021238           88 -KSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (315)
Q Consensus        88 -~dd~iG~~~i~l~~l~--~~~~~w~~L~~  114 (315)
                       +|++||++.++|.++.  .....|++|..
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~  111 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVYAHSYPLLS  111 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence             8999999999999973  44568999973

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=3.5e-20  Score=147.82  Aligned_cols=110  Identities=24%  Similarity=0.398  Sum_probs=95.1

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCce
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~   91 (315)
                      |.|.|+|++|++|++.+..+.+||||++.++....+|+++. +++||.|||.|.|.+.. ..+.|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            67999999999999999999999999999988888999886 47999999999999975 4578999999999876 899


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC---CceEEEEEE
Q 021238           92 LGSVIVTVESE--GQTGAVWYTLDSP---SGQVCLHIK  124 (315)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~---~G~i~~~l~  124 (315)
                      ||++.+++.++  +.....|++|..+   .|+|+++++
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~  117 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELT  117 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEE
Confidence            99999999986  4456899999753   466666665

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=3.8e-20  Score=149.69  Aligned_cols=111  Identities=21%  Similarity=0.359  Sum_probs=95.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEEecCCCC-CC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIW-KS   89 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~d~d~~~-~d   89 (315)
                      +|+|+|++|++|.+.+..|.+||||+++++...++|+++.++.||.|||.|.|.+.++    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            4899999999999999999999999999998899999999999999999999998642    357999999999886 89


Q ss_pred             ceeEEEEEEcccCC---CcccEEEEccCC------CceEEEEEEe
Q 021238           90 TVLGSVIVTVESEG---QTGAVWYTLDSP------SGQVCLHIKT  125 (315)
Q Consensus        90 d~iG~~~i~l~~l~---~~~~~w~~L~~~------~G~i~~~l~~  125 (315)
                      ++||++.+++.++.   .....|++|+.+      .|++.+++.+
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  125 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYI  125 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEE
Confidence            99999999999863   445789999853      4666666543

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.84  E-value=1e-19  Score=145.21  Aligned_cols=111  Identities=23%  Similarity=0.465  Sum_probs=99.0

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |.|.|+|++|++|+..+..+.+||||++++.....+|++++++.||.|+|+|.|.+.+....|.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            67999999999999999999999999999988888999999999999999999999776789999999999888999999


Q ss_pred             EEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 021238           94 SVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (315)
Q Consensus        94 ~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~  124 (315)
                      ++.+++.++......|++|.++      .|++.+++.
T Consensus        81 ~~~~~l~~~~~~~~~~~~l~~~~~~~~~~G~i~l~~~  117 (119)
T cd08377          81 KVAIPLLSIKNGERKWYALKDKKLRTRAKGSILLEMD  117 (119)
T ss_pred             EEEEEHHHCCCCCceEEECcccCCCCceeeEEEEEEE
Confidence            9999999987677899999642      466665554

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.84  E-value=2e-20  Score=148.04  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=87.7

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC----EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      .+.+..+.|+|+|++|++|+ .  .|.+||||++++..    .+.+|++.++|+||.|||+|.|++..   ....|.|.|
T Consensus         8 ~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V   84 (118)
T cd08677           8 SYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTL   84 (118)
T ss_pred             EEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEE
Confidence            34567899999999999998 3  46799999999942    46699999999999999999999864   366799999


Q ss_pred             EecCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (315)
                      ||+|+++++++||++.++++++  +.+..+|..|
T Consensus        85 ~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          85 RCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             EeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            9999999999999999999975  6667778664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.83  E-value=9.6e-20  Score=146.21  Aligned_cols=109  Identities=27%  Similarity=0.440  Sum_probs=94.1

Q ss_pred             EEEEEEEeecCCCCC-CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           16 IKLELLAAKNLIGAN-LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |+|+|++|+||++++ ..|.+||||.+.++.. ..+|+++++|+||.|||+|.|.+.+....|.|.|||++..+++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999974 4678999999999754 56999999999999999999999876678999999999999999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC------CceEEEEEE
Q 021238           94 SVIVTVESE--GQTGAVWYTLDSP------SGQVCLHIK  124 (315)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~------~G~i~~~l~  124 (315)
                      .+.++++++  ....+.|++|++.      .|++++++.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELR  120 (121)
T ss_pred             EEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEE
Confidence            999999998  3455789999863      477766654

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=1.5e-19  Score=148.03  Aligned_cols=116  Identities=22%  Similarity=0.412  Sum_probs=100.5

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCC
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWK   88 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~   88 (315)
                      ....|.|+|+|++|++|++.|..|.+||||++.++....+|+++++++||.|||+|.|.+.+. ...|.|+|||+|..++
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            356799999999999999999999999999999999899999999999999999999999653 5679999999999999


Q ss_pred             CceeEEEEEEcccCCC-------cccEEEEccC-CCceEEEEEEe
Q 021238           89 STVLGSVIVTVESEGQ-------TGAVWYTLDS-PSGQVCLHIKT  125 (315)
Q Consensus        89 dd~iG~~~i~l~~l~~-------~~~~w~~L~~-~~G~i~~~l~~  125 (315)
                      |++||++.+++.++..       ....|..|.. ..|++++++++
T Consensus        91 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          91 DDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            9999999999988622       2335667753 45999888875

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=1.7e-19  Score=150.04  Aligned_cols=112  Identities=17%  Similarity=0.339  Sum_probs=97.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCcee
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~i   92 (315)
                      .|.|+|++|++|+++|.+|.+||||++.++....+|+++.+ ++||.|||.|.|.+.++ ...|.|+|||++..+++++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            38999999999999999999999999999998889999876 69999999999999653 46899999999988889999


Q ss_pred             EEEEEEcccCC------CcccEEEEccCCC------------ceEEEEEEee
Q 021238           93 GSVIVTVESEG------QTGAVWYTLDSPS------------GQVCLHIKTI  126 (315)
Q Consensus        93 G~~~i~l~~l~------~~~~~w~~L~~~~------------G~i~~~l~~~  126 (315)
                      |++.++|.++.      .....|++|..+.            |++++++.+.
T Consensus        81 G~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          81 GRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            99999999873      2357899997532            6777777765

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.83  E-value=3.5e-19  Score=143.91  Aligned_cols=114  Identities=16%  Similarity=0.309  Sum_probs=99.6

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~   91 (315)
                      +...|+|+|++|++|...|..|.+||||++.++....+|++++++.||.|||.|.|.+.+....|.|+|||++.. .|++
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            357899999999999999999999999999999889999999999999999999999877788999999999877 5899


Q ss_pred             eEEEEEEcccCCCcccEEEEccC--------CCceEEEEEEee
Q 021238           92 LGSVIVTVESEGQTGAVWYTLDS--------PSGQVCLHIKTI  126 (315)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~~L~~--------~~G~i~~~l~~~  126 (315)
                      ||.+.+++.+.......|++|..        ..|.+.+++.+.
T Consensus        80 lG~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~  122 (126)
T cd04046          80 LGQATLSADPNDSQTLRTLPLRKRGRDAAGEVPGTISVKVTSS  122 (126)
T ss_pred             eEEEEEecccCCCcCceEEEcccCCCCCCCCCCCEEEEEEEEc
Confidence            99999999987777778999952        236666666544

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.83  E-value=1.8e-19  Score=145.59  Aligned_cols=110  Identities=23%  Similarity=0.421  Sum_probs=94.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEEC--CEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCG--SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |.|+|++|++|+.  ..|.+||||+++++  ....+|+++.+++||.|||.|.|.+......|.|+|||++..+++++||
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG   78 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLG   78 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEE
Confidence            5799999999988  67999999999996  3567999999999999999999999766778999999999998999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeec
Q 021238           94 SVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (315)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~  127 (315)
                      ++.+++.++  ......|++|.++       .|++.+++.+..
T Consensus        79 ~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~  121 (126)
T cd08678          79 LAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFME  121 (126)
T ss_pred             EEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEec
Confidence            999999996  3456789999754       466666666643

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.82  E-value=1.5e-19  Score=144.57  Aligned_cols=110  Identities=23%  Similarity=0.373  Sum_probs=95.6

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCce
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~   91 (315)
                      |+|+|++|++|+..+..+.+||||++.+.   ....+|++++++.||.|||+|.|.+... ...|.|+|||+|.. ++++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            78999999999999989999999999984   3567999999999999999999998653 55799999999988 8999


Q ss_pred             eEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEee
Q 021238           92 LGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (315)
Q Consensus        92 iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~~~l~~~  126 (315)
                      ||++.+++.++  +.....|++|.++ .|++.+++.++
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~~  118 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLLE  118 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEee
Confidence            99999999997  4567789999863 68888877653

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.82  E-value=1.2e-19  Score=145.07  Aligned_cols=99  Identities=16%  Similarity=0.341  Sum_probs=84.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEE-C----C--EEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEEec
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITC-G----S--EKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIYDW   83 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~----~--~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~d~   83 (315)
                      +|+|+|++|++|+..+ .|.+||||+|++ +    .  .+.+|+++.+++||.|||+|.|.+...    ...|.|.|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            4899999999999988 599999999998 2    2  345899999999999999999998632    34699999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      |..+++++||++.+++.++  ++....|++|.+
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9888899999999999997  445667999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.82  E-value=2.8e-19  Score=143.52  Aligned_cols=109  Identities=25%  Similarity=0.431  Sum_probs=94.5

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEE
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGS   94 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~   94 (315)
                      |.|+|++|++|+++|..|.+||||++.++... .+|+++.+++||.|||.|.|.+.+....|.|+|||++..+++++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999999999999999999997654 59999999999999999999997766899999999999999999999


Q ss_pred             EEEEcccCCC---cccEEEEccCC------CceEEEEEE
Q 021238           95 VIVTVESEGQ---TGAVWYTLDSP------SGQVCLHIK  124 (315)
Q Consensus        95 ~~i~l~~l~~---~~~~w~~L~~~------~G~i~~~l~  124 (315)
                      +.++++++..   ..+.|++|.+.      .|++++.++
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            9999887632   36789999752      466666554

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.82  E-value=1.2e-19  Score=145.88  Aligned_cols=99  Identities=22%  Similarity=0.335  Sum_probs=87.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEEec
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYDW   83 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~d~   83 (315)
                      .+.|.|+|++|++|++++ .+.+||||++++.     ..+.+|++++++.||.|||+|.|.+ ..   ....|.|+|||+
T Consensus        12 ~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~   90 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH   90 (122)
T ss_pred             CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence            578999999999999999 9999999999994     3467999999999999999999987 31   356899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (315)
                      |..+++++||++.++|.++  ......|++|
T Consensus        91 d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L  121 (122)
T cd08381          91 DSLVENEFLGGVCIPLKKLDLSQETEKWYPL  121 (122)
T ss_pred             CCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence            9999999999999999997  3446789987

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.82  E-value=3.1e-19  Score=143.46  Aligned_cols=100  Identities=29%  Similarity=0.574  Sum_probs=90.8

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|+|+|++|++|..++..+.+||||+++++....+|+++++++||.|||+|.|.+... ...|.|+|||++..+++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            4899999999999999999999999999988889999999999999999999999753 578999999999999999999


Q ss_pred             EEEEEcccCC--CcccEEEEccC
Q 021238           94 SVIVTVESEG--QTGAVWYTLDS  114 (315)
Q Consensus        94 ~~~i~l~~l~--~~~~~w~~L~~  114 (315)
                      ++.+++.++.  .....|+.|.+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L~~  103 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRLLP  103 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEECCC
Confidence            9999999873  44678999975

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.82  E-value=4.1e-19  Score=141.94  Aligned_cols=111  Identities=24%  Similarity=0.465  Sum_probs=97.4

Q ss_pred             eEEEEEEEEeecCCCCCC------CCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCC
Q 021238           14 YLIKLELLAAKNLIGANL------NGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDII   86 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~------~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~   86 (315)
                      |.|.|+|++|++|+..|.      .|.+||||+++++....+|+++.++.||.|+|.|.|.+.+ ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998875      3689999999998888999999999999999999999864 467899999999987


Q ss_pred             CCCceeEEEEEEcccC--CCcccEEEEccC-CCceEEEEEEe
Q 021238           87 WKSTVLGSVIVTVESE--GQTGAVWYTLDS-PSGQVCLHIKT  125 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-~~G~i~~~l~~  125 (315)
                       ++++||.+.+++.++  ....+.|++|.+ ..|++++++.|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence             899999999999987  344679999985 57999887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.81  E-value=3.8e-19  Score=143.92  Aligned_cols=102  Identities=29%  Similarity=0.558  Sum_probs=92.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCC--------
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--------   86 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~--------   86 (315)
                      .|+|+|++|++|+..|..|.+||||+++++....+|+++.+++||.|||+|.|.+......|.|+|||+|..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999999999999999999998888899999999999999999999876567899999999853        


Q ss_pred             ---CCCceeEEEEEEcccCCCcccEEEEccCCC
Q 021238           87 ---WKSTVLGSVIVTVESEGQTGAVWYTLDSPS  116 (315)
Q Consensus        87 ---~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~  116 (315)
                         +++++||++.+++.++......|+.|.++.
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~  114 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRT  114 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCCCCeEEECccCC
Confidence               468999999999999877788999998643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.81  E-value=3.9e-19  Score=144.77  Aligned_cols=111  Identities=23%  Similarity=0.378  Sum_probs=93.6

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCE-------EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-------~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (315)
                      .|+|+|++|++|+..|..|.+||||++.+...       ..+|++++++.||.|||+|.|.+......|.|+|||++..+
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            38999999999999999999999999998543       46999999999999999999999766678999999999999


Q ss_pred             CCceeEEEEEEcccCCC--------cccEEEEccCC------CceEEEEEEe
Q 021238           88 KSTVLGSVIVTVESEGQ--------TGAVWYTLDSP------SGQVCLHIKT  125 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l~~--------~~~~w~~L~~~------~G~i~~~l~~  125 (315)
                      ++++||++.+++.++..        ....|++|.++      .|+|++++.+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~  132 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAY  132 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEee
Confidence            99999999999998632        23489999853      3555555543

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.81  E-value=2e-19  Score=145.13  Aligned_cols=104  Identities=21%  Similarity=0.365  Sum_probs=89.6

Q ss_pred             CCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      ....+.|.|+|++|+||+++|.. |.+||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V   90 (125)
T cd08393          11 DPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSV   90 (125)
T ss_pred             ECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEE
Confidence            34467899999999999999976 899999999983     234699999999999999999999863   346899999


Q ss_pred             EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      ||++..+++++||++.++|.++  ......|++|+
T Consensus        91 ~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          91 WHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            9999999999999999999997  34456799984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.81  E-value=4e-19  Score=146.62  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=90.1

Q ss_pred             eeEEEEEEEEeecCCCCC-CCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE-ecCC
Q 021238           13 AYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWDI   85 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~-d~d~   85 (315)
                      .+.|.|+|++|+||.+.+ ..|.+||||++++.  .   .+.||+++++++||.|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            578999999999999874 67899999999992  2   366999999999999999999999866778999999 6888


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      .+++++||++.++|+++  ......|++|.++
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            88899999999999997  4556789999864

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.80  E-value=4.4e-19  Score=143.20  Aligned_cols=104  Identities=17%  Similarity=0.292  Sum_probs=89.8

Q ss_pred             CCceeEEEEEEEEeecCCCCCC-CCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      .+..+.|.|+|++|+||++.+. .|.+||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|.|
T Consensus        11 ~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V   90 (125)
T cd04029          11 DYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSV   90 (125)
T ss_pred             ECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            4567889999999999998875 5889999999983     235699999999999999999999864   356799999


Q ss_pred             EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      ||++..+++++||++.++|.++  ......|++|.
T Consensus        91 ~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          91 WHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             EECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            9999999999999999999997  45568899984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=8.5e-19  Score=140.71  Aligned_cols=105  Identities=23%  Similarity=0.437  Sum_probs=90.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|.|+|++|++|+.+    .+||||++.++....+|++++++.||.|||+|.|.+.. ....|.|+|||+|.. ++++||
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG   75 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLG   75 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceee
Confidence            389999999999887    79999999998888899999999999999999999875 467899999999977 789999


Q ss_pred             EEEEEcccCCC-------cccEEEEccCCC-----ceEEEEEE
Q 021238           94 SVIVTVESEGQ-------TGAVWYTLDSPS-----GQVCLHIK  124 (315)
Q Consensus        94 ~~~i~l~~l~~-------~~~~w~~L~~~~-----G~i~~~l~  124 (315)
                      ++.++++++..       ....|++|.+..     |+|++++.
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~  118 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVW  118 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEE
Confidence            99999999732       245899997643     66666654

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.80  E-value=6.7e-19  Score=141.72  Aligned_cols=104  Identities=22%  Similarity=0.412  Sum_probs=92.0

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~   83 (315)
                      .+..+.|.|+|++|++|++++..|.+||||++++.   ....+|++++++.||.|+|+|.|.+..   ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~   91 (124)
T cd08387          12 DKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDF   91 (124)
T ss_pred             CCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEEC
Confidence            45678999999999999999999999999999983   345799999999999999999999864   256899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      +.++++++||++.++++++  +...+.|++|+
T Consensus        92 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          92 DQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            9999999999999999997  45678899985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.80  E-value=2e-18  Score=139.27  Aligned_cols=113  Identities=25%  Similarity=0.476  Sum_probs=97.7

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCC
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~d   89 (315)
                      +.|+|+|++|++|+..+..+.+||||++.+..   ...+|+++++++||.|||+|.|.+.. ....|.|+|||++..+++
T Consensus         1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKH   80 (126)
T ss_pred             CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCC
Confidence            46899999999999999999999999998753   35699999999999999999999976 367899999999998899


Q ss_pred             ceeEEEEEEcccC-----CCcccEEEEccCCCceEEEEEEeec
Q 021238           90 TVLGSVIVTVESE-----GQTGAVWYTLDSPSGQVCLHIKTIK  127 (315)
Q Consensus        90 d~iG~~~i~l~~l-----~~~~~~w~~L~~~~G~i~~~l~~~~  127 (315)
                      ++||++.++|++.     +.....|++|.+ .|++++.+.+..
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~-~g~i~l~~~~~~  122 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT-QGRLLLRVSMEG  122 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC-CCeEEEEEEEee
Confidence            9999999999874     224568999986 799988887653

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.80  E-value=2.4e-18  Score=144.43  Aligned_cols=112  Identities=21%  Similarity=0.405  Sum_probs=95.3

Q ss_pred             eeEEEEEEEEeecCCCCC------------------------------CCCCCceEEEEEECCEE-EEeecccCCCCCee
Q 021238           13 AYLIKLELLAAKNLIGAN------------------------------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMW   61 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d------------------------------~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w   61 (315)
                      .|.|.|+|++|++|+.+|                              ..|.+||||+|+++... .+|+++.++.||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            789999999999999987                              35678999999998654 59999999999999


Q ss_pred             cceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceEEEEEEe
Q 021238           62 GEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQVCLHIKT  125 (315)
Q Consensus        62 ~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i~~~l~~  125 (315)
                      ||+|.|.+....+.|.|.|||+|..+ +++||.+.++++++  +...+.|++|.+       ..|++++++.+
T Consensus        86 nE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f  157 (158)
T cd04015          86 NESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQF  157 (158)
T ss_pred             ceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEE
Confidence            99999998776778999999999875 68999999999997  455679999953       23677777664

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.80  E-value=7e-19  Score=142.53  Aligned_cols=104  Identities=18%  Similarity=0.380  Sum_probs=89.7

Q ss_pred             CCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      ....+.|.|+|++|+||++++.. |.+||||++++.     ..+.||++++++.||.|||+|.|.+..   ....|.+.|
T Consensus        11 ~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V   90 (128)
T cd08392          11 NFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSV   90 (128)
T ss_pred             eCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEE
Confidence            44568999999999999999875 999999999983     236699999999999999999999864   256899999


Q ss_pred             EecCCCCCCceeEEEEEEcccCC-----CcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEG-----QTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~-----~~~~~w~~L~  113 (315)
                      ||++..+++++||++.|+|.++.     .....||+|.
T Consensus        91 ~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          91 WHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             EeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            99999999999999999999873     2456899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.79  E-value=4e-18  Score=137.74  Aligned_cols=111  Identities=22%  Similarity=0.334  Sum_probs=92.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCc
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd   90 (315)
                      ...|+|+|++|+||++.   +.+||||++.++... .+|++. ++.||.|||+|.|.+.+. ...+.|.|||++..++++
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            35699999999999875   478999999997644 588874 689999999999987543 357999999999999999


Q ss_pred             eeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeec
Q 021238           91 VLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIK  127 (315)
Q Consensus        91 ~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~  127 (315)
                      +||++.++|.++  +...+.|++|.+.       .|+|++++.+..
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            999999999987  4445789999753       388999888764

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.79  E-value=1.8e-18  Score=138.39  Aligned_cols=105  Identities=23%  Similarity=0.416  Sum_probs=88.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i   92 (315)
                      ++.|.|+|++|++|..++   ..||||+|++++.+.+|++.+++ ||.|||.|.|.+.+....|.|+|||+|.+ .||+|
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~~-nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~l   75 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRGS-QPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLV   75 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCCC-CCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCce
Confidence            368999999999997654   46999999999999999999884 99999999999987777799999999865 89999


Q ss_pred             EEEEEEcccCC----CcccEEEEccC----CCceEEEE
Q 021238           93 GSVIVTVESEG----QTGAVWYTLDS----PSGQVCLH  122 (315)
Q Consensus        93 G~~~i~l~~l~----~~~~~w~~L~~----~~G~i~~~  122 (315)
                      |++.++|.++.    ....+|++|++    +.|++.+.
T Consensus        76 G~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~~~~~~~~~  113 (127)
T cd08394          76 GTVWIPLSTIRQSNEEGPGEWLTLDSEVNMKNGQIVGT  113 (127)
T ss_pred             EEEEEEhHHcccCCCCCCCccEecChHHhccCCeEecc
Confidence            99999999962    23478999985    45665443

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.79  E-value=3.7e-18  Score=138.96  Aligned_cols=113  Identities=19%  Similarity=0.336  Sum_probs=98.8

Q ss_pred             eeEEEEEEEEeecCCCCCCC----------CCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGANLN----------GTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~----------g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~   81 (315)
                      .|.|+|+|++|++|++.|..          +.+||||++.++... .+|+++.++.||.|||+|.|.+.+ ...|.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~-~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN-GRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC-CCEEEEEEE
Confidence            47899999999999998863          679999999998655 599999999999999999999974 678999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCC----CcccEEEEccCCCceEEEEEEeec
Q 021238           82 DWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDSPSGQVCLHIKTIK  127 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~~~G~i~~~l~~~~  127 (315)
                      |++..+++++||++.++|.++.    ...+.|++|.+ .|++++++.+..
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~l~l~~~~~~  130 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLEP-QGKLHVKIELKG  130 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEccC-CcEEEEEEEEec
Confidence            9998888999999999999863    34688999986 799999988764

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=9e-19  Score=140.94  Aligned_cols=104  Identities=21%  Similarity=0.372  Sum_probs=90.1

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC----CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V   80 (315)
                      .+..+.|.|+|++|++|...+..+.+||||++++..     ...+|++++++.||.|||+|.|.+..    ....|.|+|
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V   91 (125)
T cd04031          12 DKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTV   91 (125)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEE
Confidence            455788999999999999999999999999999843     46699999999999999999998643    356899999


Q ss_pred             EecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (315)
                      ||++..+.+++||++.++|.+. ......|++|+
T Consensus        92 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~L~  125 (125)
T cd04031          92 WDYDRDGENDFLGEVVIDLADALLDDEPHWYPLQ  125 (125)
T ss_pred             EeCCCCCCCcEeeEEEEecccccccCCcceEECc
Confidence            9999998999999999999984 34457899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.79  E-value=1.2e-18  Score=140.28  Aligned_cols=104  Identities=23%  Similarity=0.408  Sum_probs=91.4

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~   83 (315)
                      ....+.|.|+|++|++|++.+..+.+||||++.+.   ....+|++++++.||.|||+|.|.+..   ....|.|+|||+
T Consensus        12 ~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~   91 (124)
T cd08385          12 DFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDF   91 (124)
T ss_pred             eCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeC
Confidence            34567899999999999999999999999999983   345699999999999999999999864   256899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      |..+++++||++.+++.++  +.....|++|.
T Consensus        92 d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          92 DRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             CCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            9999999999999999997  55678999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.79  E-value=2.8e-18  Score=140.33  Aligned_cols=114  Identities=19%  Similarity=0.416  Sum_probs=95.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC----------CCcEEEEEEEec
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----------LPVQIIVTIYDW   83 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~----------~~~~L~~~V~d~   83 (315)
                      +.|+|+|++|++|+++|..|.+||||++.+.....+|+++++++||.|||.|.|.+..          ....|.|+|||+
T Consensus         1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~   80 (135)
T cd04017           1 FQLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQ   80 (135)
T ss_pred             CEEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeC
Confidence            4799999999999999999999999999999889999999999999999999997532          125699999999


Q ss_pred             CCCCCCceeEEEEE-EcccC-----CCcccEEEEccC---CCceEEEEEEeec
Q 021238           84 DIIWKSTVLGSVIV-TVESE-----GQTGAVWYTLDS---PSGQVCLHIKTIK  127 (315)
Q Consensus        84 d~~~~dd~iG~~~i-~l~~l-----~~~~~~w~~L~~---~~G~i~~~l~~~~  127 (315)
                      |..++|++||++.+ ++..+     ......|++|..   ..|+|.+.+.+.+
T Consensus        81 d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          81 DSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             cCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            99999999999987 43333     245679999974   3478887777654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.79  E-value=8.8e-19  Score=141.02  Aligned_cols=104  Identities=13%  Similarity=0.203  Sum_probs=90.4

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC------CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~------~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~   79 (315)
                      +.+..+.|.|+|++|+||++++..+.+||||++++-      ....+|++.++++||.|||+|.|++..   ....|.|.
T Consensus         9 Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~   88 (124)
T cd08680           9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVD   88 (124)
T ss_pred             ECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEE
Confidence            456678899999999999999988999999999982      236799999999999999999999864   46789999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCC---CcccEEEEc
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTL  112 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L  112 (315)
                      |||++..+++++||++.++|+++.   .....|++|
T Consensus        89 V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          89 VCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             EEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            999999999999999999999872   335678875

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.79  E-value=6.6e-19  Score=139.17  Aligned_cols=99  Identities=18%  Similarity=0.294  Sum_probs=87.2

Q ss_pred             eEEEEEEEEeecCCCCCCC-CCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEecCC
Q 021238           14 YLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWDI   85 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d~d~   85 (315)
                      |.|+|+|++|++|+..|.. +.+||||++++.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999988 999999999983   345799999999999999999998754    34689999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238           86 IWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (315)
                      .++|++||++.+++.++. ....|+++.
T Consensus        81 ~~~dd~lG~~~i~l~~l~-~~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELI-EDRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHh-cCCCCCccc
Confidence            999999999999999986 446788774

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.78  E-value=1.5e-18  Score=136.85  Aligned_cols=98  Identities=21%  Similarity=0.389  Sum_probs=87.6

Q ss_pred             EEEEEEEeecCCCCCC-CCCCceEEEEEECCEEEEeecccCCCCCee-cceEEEEecCC---CcEEEEEEEecCCCCCCc
Q 021238           16 IKLELLAAKNLIGANL-NGTSDPYAIITCGSEKRFSSMVPGSRYPMW-GEEFNFSVDEL---PVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w-~e~f~f~v~~~---~~~L~~~V~d~d~~~~dd   90 (315)
                      |.|+|++|++|+.++. .|.+||||+++++....+|+++++++||.| ||+|.|.+...   ...|.|+|||++..++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6899999999999884 789999999999888899999999999999 99999998642   468999999999999999


Q ss_pred             eeEEEEEEcccCCC-----cccEEEEcc
Q 021238           91 VLGSVIVTVESEGQ-----TGAVWYTLD  113 (315)
Q Consensus        91 ~iG~~~i~l~~l~~-----~~~~w~~L~  113 (315)
                      +||++.+++.++..     ....||+|.
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~  108 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIY  108 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEcc
Confidence            99999999999733     367799985

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.78  E-value=2.4e-18  Score=139.44  Aligned_cols=106  Identities=17%  Similarity=0.318  Sum_probs=89.1

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V   80 (315)
                      +....+.|+|+|++|+||++.+.. +.+||||++.+.   ....||+++++++||.|||+|.|. +..   ....|.|.|
T Consensus        11 y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V   90 (128)
T cd08388          11 YNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAV   90 (128)
T ss_pred             EECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEE
Confidence            345678999999999999998876 899999999883   345699999999999999999994 432   245799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCC----CcccEEEEccC
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEG----QTGAVWYTLDS  114 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~----~~~~~w~~L~~  114 (315)
                      ||+|..+++++||++.++|.++.    ++...|.+|++
T Consensus        91 ~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          91 LSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             EEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            99999999999999999999972    44567888864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.78  E-value=1.2e-18  Score=144.33  Aligned_cols=100  Identities=21%  Similarity=0.379  Sum_probs=86.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEec---------------C-CC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVD---------------E-LP   73 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~---------------~-~~   73 (315)
                      +|.|+|++|++|..  .+|.+||||+|++..     ...+|+++++++||.|||+|.|.+.               + ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            48999999999998  578999999999954     5669999999999999999999984               1 12


Q ss_pred             cEEEEEEEecCCCCCCceeEEEEEEcccCCC---cccEEEEccCCC
Q 021238           74 VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQ---TGAVWYTLDSPS  116 (315)
Q Consensus        74 ~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~---~~~~w~~L~~~~  116 (315)
                      ..|.|.|||++..+.++|||++.+++.++..   ....||+|.++.
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~  124 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE  124 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence            4699999999988899999999999999843   467899998753

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.78  E-value=2.7e-18  Score=134.31  Aligned_cols=97  Identities=26%  Similarity=0.318  Sum_probs=87.2

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|.|+|++|++|+..+..+.+||||+++++....+|+++.++.||.|||.|.|.+.+ ....|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            378999999999999989999999999999899999999999999999999999976 36689999999886   78999


Q ss_pred             EEEEEcccCC----CcccEEEEccC
Q 021238           94 SVIVTVESEG----QTGAVWYTLDS  114 (315)
Q Consensus        94 ~~~i~l~~l~----~~~~~w~~L~~  114 (315)
                      ++.++|.++.    ...+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999862    24678999976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.78  E-value=3.9e-18  Score=137.31  Aligned_cols=105  Identities=21%  Similarity=0.344  Sum_probs=91.2

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEe
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYD   82 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d   82 (315)
                      ....+.|.|+|++|++|+..+..+.+||||++.+   +....+|++++++.||.|||+|.|.+..    ....|.|+|||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d   91 (125)
T cd08386          12 DFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLD   91 (125)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEe
Confidence            4557889999999999999999999999999998   3456799999999999999999997532    24579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      ++..+++++||++.+++.++  +.....|+.|.+
T Consensus        92 ~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          92 YDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            99999999999999999987  456688999864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.77  E-value=3.4e-18  Score=136.82  Aligned_cols=100  Identities=30%  Similarity=0.457  Sum_probs=85.7

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d   84 (315)
                      ..+.|.|+|++|+||++++ .|.+||||++++.     ..+.+|++++++.||.|||+|.|.+..  ....|.|.|||++
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~   88 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKL   88 (119)
T ss_pred             cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCC
Confidence            4678999999999999998 8999999999993     235699999999999999999999854  3456899999999


Q ss_pred             CCC-CCceeEEEEEEcccC--CCcccEEEEc
Q 021238           85 IIW-KSTVLGSVIVTVESE--GQTGAVWYTL  112 (315)
Q Consensus        85 ~~~-~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (315)
                      ... .+++||++.+++.++  +.....||.|
T Consensus        89 ~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          89 SKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            875 478999999999997  3445789976

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.77  E-value=1e-17  Score=134.78  Aligned_cols=99  Identities=24%  Similarity=0.401  Sum_probs=87.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEEC-CEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCC--Cce
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK--STV   91 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~--dd~   91 (315)
                      .|+|+|++|++|+.++..+.+||||+++++ ...++|+++++++||.|||+|.|.+.. ...|.|+|||++..++  +++
T Consensus         1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~   79 (123)
T cd08382           1 KVRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGF   79 (123)
T ss_pred             CeEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCce
Confidence            378999999999999999999999999996 667899999999999999999999976 7799999999998875  589


Q ss_pred             eEEEEEEcccCCC---cccEEEEccC
Q 021238           92 LGSVIVTVESEGQ---TGAVWYTLDS  114 (315)
Q Consensus        92 iG~~~i~l~~l~~---~~~~w~~L~~  114 (315)
                      ||++.+++.++..   ....|++|.+
T Consensus        80 lG~~~i~l~~l~~~~~~~~~~~~l~~  105 (123)
T cd08382          80 LGCVRIRANAVLPLKDTGYQRLDLRK  105 (123)
T ss_pred             EeEEEEEHHHccccCCCccceeEeec
Confidence            9999999999732   2367999954

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.77  E-value=4.2e-18  Score=133.89  Aligned_cols=89  Identities=18%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             eEEEEEEEEeecCCCCCCC----CCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCCCC
Q 021238           14 YLIKLELLAAKNLIGANLN----GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDIIW   87 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~----g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~~~   87 (315)
                      |.|.|+|++|++|++.+..    +.+||||+++++...++|+++++++||.|||.|.|.+.+  ....|.|+|||+|..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999998742    358999999998888899999999999999999999854  3457999999999999


Q ss_pred             CCceeEEEEEEcccC
Q 021238           88 KSTVLGSVIVTVESE  102 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l  102 (315)
                      .|++||++.++|.++
T Consensus        81 ~dd~IG~~~l~L~~l   95 (108)
T cd04039          81 FNDYVATGSLSVQEL   95 (108)
T ss_pred             CCcceEEEEEEHHHH
Confidence            999999999999986

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.77  E-value=4.8e-18  Score=136.91  Aligned_cols=105  Identities=19%  Similarity=0.346  Sum_probs=90.2

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIY   81 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V~   81 (315)
                      +....+.|.|+|++|+||++.+..|.+||||++.+   ...+.+|++.++ .||.|||+|.|. +..   ....|.|.||
T Consensus        11 Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~   89 (124)
T cd08389          11 YDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLY   89 (124)
T ss_pred             ECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEE
Confidence            44567889999999999999999999999999877   234669998887 999999999998 543   3667999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      |++..+++++||++.++|+++  ......|++|+|
T Consensus        90 ~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          90 GVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             ECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            999999999999999999997  455678999975

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.77  E-value=7.8e-18  Score=135.12  Aligned_cols=114  Identities=21%  Similarity=0.378  Sum_probs=94.9

Q ss_pred             eEEEEEEEEeecCCCCC-CCCCCceEEEEEECC--EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238           14 YLIKLELLAAKNLIGAN-LNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~~--~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd   90 (315)
                      |.|.|+|++|++|+..+ ..+.+||||++.++.  ...+|+++.++.||.|||.|.|.+.+..+.|.|+|||++..++++
T Consensus         2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d~   81 (124)
T cd04044           2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKDK   81 (124)
T ss_pred             eEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCCc
Confidence            78999999999999766 356799999999976  678999999999999999999999866789999999999988999


Q ss_pred             eeEEEEEEcccCCC--cc-cEEEEcc---CCCceEEEEEEeec
Q 021238           91 VLGSVIVTVESEGQ--TG-AVWYTLD---SPSGQVCLHIKTIK  127 (315)
Q Consensus        91 ~iG~~~i~l~~l~~--~~-~~w~~L~---~~~G~i~~~l~~~~  127 (315)
                      +||.+.+++.++..  .. ..|..+.   ...|++++.+.+.+
T Consensus        82 ~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          82 LIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             eeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence            99999999999732  22 2344444   23588888887753

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.77  E-value=5.5e-18  Score=136.77  Aligned_cols=104  Identities=19%  Similarity=0.323  Sum_probs=90.3

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~   81 (315)
                      .+..+.|+|+|++|+||+..+..+.+||||++.+.     ....+|++++++.||.|||+|.|.+..   ....|.+.||
T Consensus        12 ~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~   91 (127)
T cd04030          12 SSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVK   91 (127)
T ss_pred             eCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEE
Confidence            45678899999999999999999999999999983     456799999999999999999999853   2468999999


Q ss_pred             ecCCC--CCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           82 DWDII--WKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        82 d~d~~--~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      |++..  +++++||++.++|.++  ......|++|.
T Consensus        92 ~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          92 NSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             ECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            99875  6899999999999997  45567899884

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.77  E-value=1.3e-17  Score=133.59  Aligned_cols=101  Identities=21%  Similarity=0.307  Sum_probs=90.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i   92 (315)
                      |.|.|+|++|++|++.+..+.+||||++.++. ...+|+++.++.||.|||+|.|.+....+.|.|+|||++..+++++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999999999999999999965 45799999999999999999999877678999999999999999999


Q ss_pred             EEEEEEcccC-CCcccEEEEccC
Q 021238           93 GSVIVTVESE-GQTGAVWYTLDS  114 (315)
Q Consensus        93 G~~~i~l~~l-~~~~~~w~~L~~  114 (315)
                      |++.+++.++ ......||.|..
T Consensus        81 G~~~~~l~~l~~~~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKKNEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCCCCCceEEecC
Confidence            9999999996 445677887754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=7.1e-18  Score=135.32  Aligned_cols=103  Identities=19%  Similarity=0.367  Sum_probs=89.7

Q ss_pred             CCceeEEEEEEEEeecCCCCC-CCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      ....+.|.|+|++|+||++.+ ..+.+||||++++.     ....+|++++++.||.|||+|.|.+.+   ....|.|+|
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v   89 (123)
T cd08521          10 NYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSV   89 (123)
T ss_pred             eCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            345788999999999999998 78899999999882     145799999999999999999999864   256899999


Q ss_pred             EecCCCCCCceeEEEEEEcccC--CCcccEEEEc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL  112 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L  112 (315)
                      ||++..+++++||++.++|.++  +.....||+|
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          90 WHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             EeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            9999999999999999999997  5556889987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.76  E-value=1.3e-18  Score=141.70  Aligned_cols=109  Identities=17%  Similarity=0.297  Sum_probs=94.3

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +....+.|.|+|++|++|++.|..|.+||||++.+.     ....+|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus         8 y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V   87 (133)
T cd08384           8 YNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITV   87 (133)
T ss_pred             EcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEE
Confidence            456788999999999999999999999999999983     235699999999999999999999864   246799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (315)
                      ||+|..+++++||++.+++...+.....|+++....+
T Consensus        88 ~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~  124 (133)
T cd08384          88 WDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPD  124 (133)
T ss_pred             EeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCC
Confidence            9999988999999999999987777778988864434

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.76  E-value=2.7e-18  Score=140.48  Aligned_cols=107  Identities=21%  Similarity=0.272  Sum_probs=91.4

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---C--EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S--EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~--~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+....|.|+|++|+||++.|..|.+||||++++.   .  .+.+|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus        10 Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V   89 (136)
T cd08406          10 YLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTV   89 (136)
T ss_pred             EcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEE
Confidence            445677899999999999999999999999999982   1  24589999999999999999999864   366799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCC
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSP  115 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~  115 (315)
                      ||+|..+++++||++.++....+....+|..+...
T Consensus        90 ~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~  124 (136)
T cd08406          90 AESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLAS  124 (136)
T ss_pred             EeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHC
Confidence            99999999999999999887777667778776543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.76  E-value=8.8e-18  Score=134.84  Aligned_cols=105  Identities=20%  Similarity=0.333  Sum_probs=90.4

Q ss_pred             CCceeEEEEEEEEeecCCCCC-CCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEe
Q 021238           10 TNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d   82 (315)
                      ....+.|.|+|++|++|++.+ ..+.+||||++++   +....+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d   89 (123)
T cd08390          10 DLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYD   89 (123)
T ss_pred             CCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEE
Confidence            345778999999999999998 6889999999998   23456899999999999999999998642   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      ++..+.+++||++.++|.++  ......|++|++
T Consensus        90 ~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          90 VDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             CCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            99988899999999999997  445578999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.76  E-value=1.8e-17  Score=133.37  Aligned_cols=102  Identities=26%  Similarity=0.455  Sum_probs=92.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccC-CCCCeecceEEEEecCC----CcEEEEEEEecCCCCC
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDEL----PVQIIVTIYDWDIIWK   88 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~-tlnP~w~e~f~f~v~~~----~~~L~~~V~d~d~~~~   88 (315)
                      |.|.|+|++|++|+..+..+.+||||+++++....+|+++.+ +.||.|||+|.|.+...    ...|.|+|||.+..++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            679999999999999998999999999999888889998885 89999999999999765    5689999999999889


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           89 STVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        89 dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      +++||++.+++.++  .+..+.|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999997  4567889999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.75  E-value=1.1e-17  Score=139.15  Aligned_cols=100  Identities=26%  Similarity=0.559  Sum_probs=88.3

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----------------------------EEEEeecccCCCCC
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----------------------------EKRFSSMVPGSRYP   59 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----------------------------~~~rT~vi~~tlnP   59 (315)
                      ..++.+.|.|+|++|++|.++|..|.+||||++.+..                             ...+|+++.+++||
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            5678999999999999999999999999999999842                             13689999999999


Q ss_pred             eecceEEEEecC-CCcEEEEEEEecCCCCCCceeEEEEEEcccCC-CcccEEEEc
Q 021238           60 MWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG-QTGAVWYTL  112 (315)
Q Consensus        60 ~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~-~~~~~w~~L  112 (315)
                      .|||+|.|.+.+ ....|.|+|||++    +++||++.++++++. ...+.||+|
T Consensus       103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPSCGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCCCCCCCeEeC
Confidence            999999999975 3678999999987    889999999999974 567899987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.75  E-value=4.5e-18  Score=139.23  Aligned_cols=110  Identities=19%  Similarity=0.385  Sum_probs=93.7

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~   81 (315)
                      ....+.|.|+|++|++|++.|..|.+||||++++.  .   ...+|+++++++||.|+|+|.|.+..   ....|.|+||
T Consensus        11 ~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~   90 (136)
T cd08404          11 QPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVL   90 (136)
T ss_pred             eCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEE
Confidence            34577899999999999999999999999999983  2   24589999999999999999999863   3567999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~i  119 (315)
                      |+|..+++++||++.+++...+.....|++|....|+.
T Consensus        91 d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~  128 (136)
T cd08404          91 DSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQ  128 (136)
T ss_pred             ECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCe
Confidence            99999999999999999998766677899886544553

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.75  E-value=1.6e-17  Score=131.12  Aligned_cols=99  Identities=23%  Similarity=0.480  Sum_probs=86.7

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-----CcEEEEEEEecCCC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDII   86 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-----~~~L~~~V~d~d~~   86 (315)
                      ..+.|+|+|++|++|.    .|.+||||+++++..+.+|++++++.||.|||+|.|.+..+     ...|.|+|||++..
T Consensus         2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~   77 (111)
T cd04011           2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSL   77 (111)
T ss_pred             CcEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccc
Confidence            4689999999999998    57899999999998899999999999999999999997532     35799999999999


Q ss_pred             CCCceeEEEEEEcccCC-----CcccEEEEccC
Q 021238           87 WKSTVLGSVIVTVESEG-----QTGAVWYTLDS  114 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l~-----~~~~~w~~L~~  114 (315)
                      +++++||++.++|+++.     .....|++|..
T Consensus        78 ~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          78 RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence            88999999999999872     22567999853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.75  E-value=1.9e-17  Score=133.64  Aligned_cols=93  Identities=19%  Similarity=0.372  Sum_probs=83.0

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEec--CCCcEEEEEEEecCCCC
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIW   87 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~--~~~~~L~~~V~d~d~~~   87 (315)
                      ....+.|.|+|++|++|+. +..|.+||||+|+++....+|+++++++||.|||+|.|...  +....|.|+|||++..+
T Consensus        24 ~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          24 RRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            4457999999999999984 67889999999999888889999999999999999999753  34778999999999999


Q ss_pred             CCceeEEEEEEcccCC
Q 021238           88 KSTVLGSVIVTVESEG  103 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l~  103 (315)
                      +|++||++.++|....
T Consensus       103 ~dd~IG~~~i~l~~~~  118 (127)
T cd04032         103 DDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCeeEEEEEEecCCc
Confidence            9999999999998653

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.75  E-value=4e-17  Score=134.89  Aligned_cols=89  Identities=25%  Similarity=0.451  Sum_probs=84.5

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |.|+|+|++|++|+..+. +.+||||+++++....+|++++++.||.|||+|.|.+.++...|.|+|||++..+.|++||
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            789999999999999887 8999999999999999999999999999999999999887889999999999999999999


Q ss_pred             EEEEEcccCC
Q 021238           94 SVIVTVESEG  103 (315)
Q Consensus        94 ~~~i~l~~l~  103 (315)
                      .+.+++.++.
T Consensus        81 ~a~i~l~~l~   90 (145)
T cd04038          81 EAEIDLEPLV   90 (145)
T ss_pred             EEEEEHHHhh
Confidence            9999999873

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.74  E-value=1.9e-17  Score=133.39  Aligned_cols=110  Identities=22%  Similarity=0.374  Sum_probs=93.7

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeeccc-CCCCCeecceEEEEecCC-----CcEEEEEEEecCCCC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVP-GSRYPMWGEEFNFSVDEL-----PVQIIVTIYDWDIIW   87 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~-~tlnP~w~e~f~f~v~~~-----~~~L~~~V~d~d~~~   87 (315)
                      .|.|+|++|++|+..+..+.+||||+++++. ...+|++.. ++.||.|||.|.|.+.+.     ...|.|+|||++..+
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3789999999999999899999999999977 778999876 589999999999999765     578999999999888


Q ss_pred             CCceeEEEEEEcccCC--C-----cccEEEEccCCCceEEEEEE
Q 021238           88 KSTVLGSVIVTVESEG--Q-----TGAVWYTLDSPSGQVCLHIK  124 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l~--~-----~~~~w~~L~~~~G~i~~~l~  124 (315)
                      ++++||++.+++.++.  .     ....|++|..+.|+..+.+.
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~  124 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLN  124 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEe
Confidence            9999999999999962  1     13589999876666655543

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.74  E-value=5.9e-17  Score=130.95  Aligned_cols=107  Identities=20%  Similarity=0.324  Sum_probs=91.0

Q ss_pred             EEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCCceeEEEE
Q 021238           20 LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTVLGSVI   96 (315)
Q Consensus        20 Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~dd~iG~~~   96 (315)
                      |++|++|+.  ..|.+||||+++++....+|++++++.||.|||+|.|.+..   ....|.|+|||++..+++++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999998  68899999999998888999999999999999999999964   4678999999999998999999999


Q ss_pred             EEcccCC--CcccEEEEccCC-----CceEEEEEEeecC
Q 021238           97 VTVESEG--QTGAVWYTLDSP-----SGQVCLHIKTIKL  128 (315)
Q Consensus        97 i~l~~l~--~~~~~w~~L~~~-----~G~i~~~l~~~~~  128 (315)
                      ++++++.  .....|++|..+     .|++++++.+.+.
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~  118 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPP  118 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCC
Confidence            9999873  445679999632     3566666665544

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.74  E-value=7.8e-18  Score=137.85  Aligned_cols=105  Identities=18%  Similarity=0.213  Sum_probs=88.4

Q ss_pred             CCCceeEEEEEEEEeecCCCCCC--CCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC---CCcEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV   78 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~   78 (315)
                      +.+..+.|+|+|++|+||.++|.  .+.+||||++++..     .+.+|+++++++||.|||+|.|.+..   ....|.|
T Consensus        10 Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~   89 (138)
T cd08407          10 YLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVEL   89 (138)
T ss_pred             EeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEE
Confidence            45667889999999999999983  35599999999832     24599999999999999999999864   3567999


Q ss_pred             EEEecCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (315)
                      +|||+|..+++++||++.+++...+....+|..+.
T Consensus        90 ~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml  124 (138)
T cd08407          90 EVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEML  124 (138)
T ss_pred             EEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHH
Confidence            99999999999999999999987666666676653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.74  E-value=2e-17  Score=139.34  Aligned_cols=104  Identities=21%  Similarity=0.279  Sum_probs=89.8

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~   81 (315)
                      ...+.|.|+|++|+||++.+..+.+||||++++     ....++|++++++.||.|||+|.|.+..    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            367999999999999999999999999999988     2356799999999999999999998532    2457999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      |++..+++++||++.+++.++  ......|+.|.+
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999998999999999999986  345678888853

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.73  E-value=3.3e-17  Score=136.12  Aligned_cols=88  Identities=23%  Similarity=0.368  Sum_probs=79.8

Q ss_pred             EEEEEEEEeecCCCCCCCC--------------CCceEEEEEECCEEEEeecccCCCCCeecceEEEEec--CCCcEEEE
Q 021238           15 LIKLELLAAKNLIGANLNG--------------TSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIV   78 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g--------------~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~--~~~~~L~~   78 (315)
                      .|.|+|++|++|+.+|..+              .+||||+|.++....+|+++++++||.|||+|.|.+.  .....|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999998554              6899999999988899999999999999999999874  34568999


Q ss_pred             EEEecCCCCCCceeEEEEEEcccC
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESE  102 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l  102 (315)
                      +|||+|..++|++||.+.+++.++
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l  104 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKI  104 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHh
Confidence            999999999999999999999986

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.73  E-value=6.5e-18  Score=138.22  Aligned_cols=107  Identities=28%  Similarity=0.426  Sum_probs=92.3

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCC---CcEEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVT   79 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~   79 (315)
                      .+.++.+.|.|+|++|++|+.++..|.+||||++.+.  .   ...+|+++++++||.|||+|.|.+...   ...|.|+
T Consensus         9 ~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~   88 (136)
T cd08402           9 RYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVT   88 (136)
T ss_pred             EEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEE
Confidence            3556788999999999999999999999999999983  2   345899999999999999999998532   3479999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      |||++.++++++||++.+++...+.....|+++..
T Consensus        89 v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~  123 (136)
T cd08402          89 VLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA  123 (136)
T ss_pred             EEeCCCCCCCceeEEEEECCccCChHHHHHHHHHh
Confidence            99999999999999999999887766778888754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.73  E-value=5.6e-17  Score=128.60  Aligned_cols=102  Identities=26%  Similarity=0.483  Sum_probs=89.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |+|+|++|++|+..+..+.+||||++.+.. ...+|+++.++.+|.|||+|.|.+.+ ..+.+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            579999999999999889999999999954 45699999999999999999999875 4678999999999988999999


Q ss_pred             EEEEEcccC--CCcccEEEEccCCCc
Q 021238           94 SVIVTVESE--GQTGAVWYTLDSPSG  117 (315)
Q Consensus        94 ~~~i~l~~l--~~~~~~w~~L~~~~G  117 (315)
                      ++.+++.++  +.....|++|.+++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L~~~g~  106 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPLDGQGG  106 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEECcCCCC
Confidence            999999986  445678999987544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.72  E-value=1.4e-17  Score=135.99  Aligned_cols=110  Identities=23%  Similarity=0.387  Sum_probs=92.1

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|+|+|++|++|++++..|.+||||++.+.     ....+|+++++++||.|+|+|.|.+..   ....|.|+|
T Consensus         9 y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v   88 (134)
T cd08403           9 YLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAV   88 (134)
T ss_pred             EcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEE
Confidence            346678999999999999999999999999999983     135689999999999999999999853   234699999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      ||++..+++++||++.+++...+.+...|+++....|+
T Consensus        89 ~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~  126 (134)
T cd08403          89 VDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRK  126 (134)
T ss_pred             EECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCC
Confidence            99999999999999999988666666778877543343

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.72  E-value=4.3e-17  Score=133.61  Aligned_cols=99  Identities=20%  Similarity=0.411  Sum_probs=87.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEEC----CEEEEeecccCCCCCeecceEEEEecCC----------------CcE
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQ   75 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~----~~~~rT~vi~~tlnP~w~e~f~f~v~~~----------------~~~   75 (315)
                      |.|+|++|++|+.+ ..|.+||||++++.    ....+|+++.++.||.|+|+|.|.+...                ...
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            57999999999998 78999999999997    6678999999999999999999998542                457


Q ss_pred             EEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           76 IIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        76 L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      |.|+|||++..++++|||++.+++.++  ......|++|.++
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999988999999999999986  3456889999864

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=2.7e-18  Score=158.94  Aligned_cols=103  Identities=25%  Similarity=0.499  Sum_probs=92.4

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d   84 (315)
                      ....|+|+|.+|+||.++|.+|.|||||++++     +..+++|++++.++||+|||+|+|.+.+  .+..|.++|||||
T Consensus       178 ~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWD  257 (683)
T KOG0696|consen  178 KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWD  257 (683)
T ss_pred             cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccc
Confidence            34578899999999999999999999999999     3456799999999999999999999964  5778999999999


Q ss_pred             CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (315)
                      +.+.+||+|...+.++++ ..+.+.||.|..
T Consensus       258 rTsRNDFMGslSFgisEl~K~p~~GWyKlLs  288 (683)
T KOG0696|consen  258 RTSRNDFMGSLSFGISELQKAPVDGWYKLLS  288 (683)
T ss_pred             ccccccccceecccHHHHhhcchhhHHHHhh
Confidence            999999999999999997 567889999864

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.72  E-value=1.6e-17  Score=135.88  Aligned_cols=109  Identities=25%  Similarity=0.395  Sum_probs=92.0

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|.|+|++|+||++.+..|.+||||++.+.     ....+|++++++.||.|||+|.|.+..   ....|.|+|
T Consensus        10 y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v   89 (136)
T cd08405          10 YNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITV   89 (136)
T ss_pred             EcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEE
Confidence            445678999999999999999999999999999882     234589999999999999999999852   246799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (315)
                      ||++..+++++||++.+++.+.+.....|+++....|
T Consensus        90 ~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~  126 (136)
T cd08405          90 MDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPR  126 (136)
T ss_pred             EECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCC
Confidence            9999999999999999999987666677877754333

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.72  E-value=6.3e-17  Score=131.96  Aligned_cols=94  Identities=21%  Similarity=0.409  Sum_probs=83.2

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-------CEEEEeecccCCCCCeecceEEEEecC-----CCcEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-------SEKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQII   77 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-------~~~~rT~vi~~tlnP~w~e~f~f~v~~-----~~~~L~   77 (315)
                      ....+.|+|+|++|++|+..+..|.+||||+|++.       ....+|+++++|+||.|||+|.|.+..     ....|.
T Consensus        12 ~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~   91 (133)
T cd04009          12 RASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLL   91 (133)
T ss_pred             cCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEE
Confidence            34567899999999999999989999999999984       346799999999999999999999854     245799


Q ss_pred             EEEEecCCCCCCceeEEEEEEcccCC
Q 021238           78 VTIYDWDIIWKSTVLGSVIVTVESEG  103 (315)
Q Consensus        78 ~~V~d~d~~~~dd~iG~~~i~l~~l~  103 (315)
                      |+|||++..+++++||++.++|+++.
T Consensus        92 ~~V~d~d~~~~d~~iG~~~i~l~~l~  117 (133)
T cd04009          92 FTVKDYDLLGSNDFEGEAFLPLNDIP  117 (133)
T ss_pred             EEEEecCCCCCCcEeEEEEEeHHHCC
Confidence            99999999988999999999999874

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.71  E-value=3.7e-17  Score=133.70  Aligned_cols=110  Identities=21%  Similarity=0.408  Sum_probs=90.7

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C-C---EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G-S---EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~-~---~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|.|+|++|++|+..|..|.+||||++.+ . .   ...+|+++++++||.|||+|.|.+..   ....|.|+|
T Consensus         9 y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V   88 (135)
T cd08410           9 YLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTV   88 (135)
T ss_pred             ECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEE
Confidence            34566899999999999999999999999999997 2 1   34689999999999999999999853   234799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G~  118 (315)
                      ||+|..+++++||++.+.....+. ...+|..|....|+
T Consensus        89 ~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~  127 (135)
T cd08410          89 YGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRT  127 (135)
T ss_pred             EeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCC
Confidence            999999999999999877766544 35778888654444

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.71  E-value=4.4e-17  Score=132.06  Aligned_cols=107  Identities=21%  Similarity=0.293  Sum_probs=89.5

Q ss_pred             CCCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCC-CCeecceEEEEecC--CCcEEEE
Q 021238            7 DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSR-YPMWGEEFNFSVDE--LPVQIIV   78 (315)
Q Consensus         7 ~~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tl-nP~w~e~f~f~v~~--~~~~L~~   78 (315)
                      .++.+..+.|+|+|++|+||++++..+.+||||+|++-     ..+++|+++++|+ ||.|||+|.|++..  .+..|.+
T Consensus         7 L~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v   86 (135)
T cd08692           7 TCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLI   86 (135)
T ss_pred             eeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEE
Confidence            46778899999999999999998767788999999882     3466999999995 69999999999964  3456899


Q ss_pred             EEEecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (315)
                      +|||++..+++++||++.++.+.. +.+..+|.+..
T Consensus        87 ~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~  122 (135)
T cd08692          87 KLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTI  122 (135)
T ss_pred             EEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHH
Confidence            999999999999999999999774 34467777653

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=99.71  E-value=8e-18  Score=166.33  Aligned_cols=103  Identities=36%  Similarity=0.650  Sum_probs=91.8

Q ss_pred             ceeec--cCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccC-cEEEEE
Q 021238          165 LQTIF--NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINP-AITIIL  241 (315)
Q Consensus       165 f~~~F--~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~-~i~i~~  241 (315)
                      |...+  ++|+++.|+.+|+|++.+.+.+|||||++..|+||+|+++||+++++||+.+|+-|+|++++++.| +|.|.+
T Consensus       109 ~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf~eI~~ikk~~tag~fpn~i~i~t  188 (590)
T KOG1032|consen  109 LASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPFDEITLIKKTKTAGIFPNAIEITT  188 (590)
T ss_pred             hhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEeeeeeeeeehhhhccCCCcceEEec
Confidence            44444  488999999999999999999999999999999999999999999999999999999999999998 677774


Q ss_pred             ecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHh
Q 021238          242 RMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKN  283 (315)
Q Consensus       242 ~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~  283 (315)
                                      +..+|.|+||.+||.+|.+|..+.+.
T Consensus       189 ----------------~~~ky~f~s~~Srda~~~~~~~~~~~  214 (590)
T KOG1032|consen  189 ----------------GTTKYIFVSLLSRDATYKLIKLLLHK  214 (590)
T ss_pred             ----------------CCCcceeeecccCccHHHHHHHhhhh
Confidence                            45699999999999999977555543

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.70  E-value=3.7e-17  Score=134.13  Aligned_cols=110  Identities=19%  Similarity=0.336  Sum_probs=92.6

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C----EEEEeecccCCCCCeecceEEEEecC---CCcEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIV   78 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~   78 (315)
                      .+....+.|.|+|++|+||++++..|.+||||++.+.  .    .+.+|++++++.||.|||+|.|.+..   ....|.|
T Consensus         9 ~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~   88 (138)
T cd08408           9 EYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMF   88 (138)
T ss_pred             EEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEE
Confidence            4566789999999999999999999999999999982  1    24599999999999999999999863   3568999


Q ss_pred             EEEecCCCCCCceeEEEEEEcccCCC-cccEEEEccCCCc
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESEGQ-TGAVWYTLDSPSG  117 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L~~~~G  117 (315)
                      .|||++..+++++||++.+++...+. ...+|..+....+
T Consensus        89 ~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~  128 (138)
T cd08408          89 SVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKG  128 (138)
T ss_pred             EEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCC
Confidence            99999999999999999999987653 3467887754333

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.70  E-value=7.4e-16  Score=128.17  Aligned_cols=115  Identities=12%  Similarity=0.125  Sum_probs=90.2

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC---------CcEEEEE
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---------PVQIIVT   79 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~---------~~~L~~~   79 (315)
                      +.|+|....+-+|+..+..+.+||||++++     ...+.||+++++|+||.|||+|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            444444444444778888889999999987     24567999999999999999999999643         3469999


Q ss_pred             EEecCCC-CCCceeEEEEEEcccC--CCcccEEEEcc-C---CCceEEEEEEeecC
Q 021238           80 IYDWDII-WKSTVLGSVIVTVESE--GQTGAVWYTLD-S---PSGQVCLHIKTIKL  128 (315)
Q Consensus        80 V~d~d~~-~~dd~iG~~~i~l~~l--~~~~~~w~~L~-~---~~G~i~~~l~~~~~  128 (315)
                      |||.+.+ .+|++||++.++|+.+  ......|++|. +   .+|++++++.....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            9999986 4799999999999998  44566799985 2   35888888876543

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.69  E-value=4.9e-16  Score=123.41  Aligned_cols=105  Identities=29%  Similarity=0.427  Sum_probs=85.0

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCCce
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~dd~   91 (315)
                      |.|+|++|++|+..   +.+||||.++++.. ..+|+++.+ .||.|||+|.|.+.+   ....|.+.+||.+....+.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999976   78999999999765 469999988 999999999999875   23568888898887666777


Q ss_pred             eEEEEEEcccCCCcccEEEEccCC------CceEEEEEE
Q 021238           92 LGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIK  124 (315)
Q Consensus        92 iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~  124 (315)
                      +|.+.+.....+.....|++|.+.      .|++++.+.
T Consensus        78 ~g~v~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~  116 (117)
T cd08383          78 IGKVALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRAR  116 (117)
T ss_pred             EEEEEecCcCCCCcceeEEECccCCCCCCcCceEEEEEE
Confidence            777766665567777899999753      477776664

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.69  E-value=5.7e-16  Score=126.72  Aligned_cols=99  Identities=23%  Similarity=0.272  Sum_probs=83.1

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEEC-------------CEEEEeecccCCCCCee-cceEEEEecCCCcEEEEEE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG-------------SEKRFSSMVPGSRYPMW-GEEFNFSVDELPVQIIVTI   80 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-------------~~~~rT~vi~~tlnP~w-~e~f~f~v~~~~~~L~~~V   80 (315)
                      ...|++++|+||+ ++..|++||||++++.             ...++|+++++++||.| ||+|.|.+.. ...|.++|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            4689999999998 7889999999999983             13679999999999999 9999999864 56899999


Q ss_pred             EecCCCCC---CceeEEEEEEcccCC-----CcccEEEEccCC
Q 021238           81 YDWDIIWK---STVLGSVIVTVESEG-----QTGAVWYTLDSP  115 (315)
Q Consensus        81 ~d~d~~~~---dd~iG~~~i~l~~l~-----~~~~~w~~L~~~  115 (315)
                      ||++..+.   +++||++.+++.++.     .....|++|.++
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~  122 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRR  122 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcC
Confidence            99875443   799999999999972     235679999854

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.69  E-value=2.5e-16  Score=127.91  Aligned_cols=105  Identities=27%  Similarity=0.479  Sum_probs=91.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCCC
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDII   86 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~~   86 (315)
                      +.|+|+|++|++|+..+..+.+||||++.+.     ....+|+++.++.+|.|||+|.|.+.+  ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999999988999999999984     356799999999999999999999864  356799999999988


Q ss_pred             CCCceeEEEEEEcccCC-CcccEEEEccC-CCce
Q 021238           87 WKSTVLGSVIVTVESEG-QTGAVWYTLDS-PSGQ  118 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l~-~~~~~w~~L~~-~~G~  118 (315)
                      +++++||++.+++.++. .....|++|.. +.|.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~~~~~w~~L~~~~~~~  126 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKMPVDGWYKLLNQEEGE  126 (131)
T ss_pred             CCcceeEEEEEeHHHhCcCccCceEECcCccccc
Confidence            89999999999999973 45678999964 3453

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.69  E-value=2.2e-16  Score=126.43  Aligned_cols=96  Identities=16%  Similarity=0.229  Sum_probs=82.3

Q ss_pred             EEEEeecCCCCCCCCCCceEEEEEECCE-------EEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCC----C
Q 021238           19 ELLAAKNLIGANLNGTSDPYAIITCGSE-------KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI----I   86 (315)
Q Consensus        19 ~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-------~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~----~   86 (315)
                      -.++|++|+..+..|.+||||++++...       ..+|+++++++||.|+|+|.|.+. +....|.|+|||+|.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            4588999999999999999999999443       379999999999999999999864 446689999999997    7


Q ss_pred             CCCceeEEEEEEcccCC--CcccEEEEccC
Q 021238           87 WKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l~--~~~~~w~~L~~  114 (315)
                      +++++||++.+++.++.  .....|++|.+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~  114 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLKG  114 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence            89999999999999973  45567888844

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.69  E-value=3.2e-16  Score=126.27  Aligned_cols=89  Identities=24%  Similarity=0.492  Sum_probs=80.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCEE--EEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCce
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSEK--RFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~--~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~   91 (315)
                      .|+|.|++|++|+.+|..|.+||||++.++...  .+|+++++++||.|||+|.|.+.. ....|.|+|||+|..++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            478999999999999999999999999997654  478889999999999999999853 46789999999999999999


Q ss_pred             eEEEEEEcccCC
Q 021238           92 LGSVIVTVESEG  103 (315)
Q Consensus        92 iG~~~i~l~~l~  103 (315)
                      ||++.+++++..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999999864

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF02893 GRAM: GRAM domain; InterPro: IPR004182 The GRAM domain is found in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.68  E-value=5.7e-17  Score=117.03  Aligned_cols=67  Identities=30%  Similarity=0.638  Sum_probs=48.6

Q ss_pred             CCceeeccCCcccceeecceeeeee-ecccceeEEeecceeeeeecCCCcee-EEEEecCceeEEEeec
Q 021238          163 GPLQTIFNLLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRSQ  229 (315)
Q Consensus       163 ~~f~~~F~lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~~  229 (315)
                      +.|++.|++|.+|.|+.+|.|++++ .++++|+||+|.+|+||+|+.++..+ +++|||.||.+|+|.+
T Consensus         1 ~~f~~~F~lp~~E~li~~~~c~l~~~~~~~~G~LyiT~~~lcF~s~~~~~~~~~~~ipl~~I~~i~k~~   69 (69)
T PF02893_consen    1 EKFRKLFKLPEEERLIEEYSCALFKSKIPVQGRLYITNNYLCFYSNKFGSKTCKFVIPLSDIKSIEKET   69 (69)
T ss_dssp             ----------TT--EEEEEEETTTEE---EEEEEEEESSEEEEEESSSSS-E-EEEEEGGGEEEEEEE-
T ss_pred             CcccccccCCCCCeEEEEEEEEEECCccceeeEEEECCCEEEEEECCCCCceEEEEEEhHheeEEEEeC
Confidence            3589999999999999999999999 99999999999999999999999887 9999999999999964

It is normally about 70 amino acids in length. It is thought to be an intracellular protein-binding or lipid-binding signalling domain, which has an important function in membrane-associated processes. Mutations in the GRAM domain of myotubularins cause a muscle disease, which suggests that the domain is essential for the full function of the enzyme []. Myotubularin-related proteins are a large subfamily of protein tyrosine phosphatases (PTPs) that dephosphorylate D3-phosphorylated inositol lipids [].; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A.

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.68  E-value=1e-16  Score=130.39  Aligned_cols=109  Identities=26%  Similarity=0.438  Sum_probs=93.7

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~   81 (315)
                      .+..+.|.|+|++|++|+..+..+.+||||++.+..     ...+|+++.++.||.|||+|.|.+...   ...|.|+||
T Consensus        10 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~   89 (134)
T cd00276          10 LPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVV   89 (134)
T ss_pred             eCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEE
Confidence            345688999999999999999899999999999842     245999999999999999999998653   478999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      |.+..+++++||++.+++++.+...+.|++|....|+
T Consensus        90 d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~  126 (134)
T cd00276          90 DKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRK  126 (134)
T ss_pred             ecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCC
Confidence            9998888999999999999976677889998754343

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.67  E-value=1.5e-15  Score=122.49  Aligned_cols=97  Identities=15%  Similarity=0.273  Sum_probs=83.0

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeE
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      .|.|+|++|+ |...+..+.+||||+++++.. ..+|+++.+++||.|||.|.|.+.+ ...|.|+|||++..+.+++||
T Consensus         3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG   80 (125)
T cd04021           3 QLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLG   80 (125)
T ss_pred             eEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEE
Confidence            6899999998 656666889999999999766 7899999999999999999999865 678999999999998999999


Q ss_pred             EEEEEcccCCC-----c--ccEEEEcc
Q 021238           94 SVIVTVESEGQ-----T--GAVWYTLD  113 (315)
Q Consensus        94 ~~~i~l~~l~~-----~--~~~w~~L~  113 (315)
                      ++.++|.++..     .  ...|++|.
T Consensus        81 ~~~i~l~~l~~~~~~~~~~~~~~~~~~  107 (125)
T cd04021          81 EASLDLSDILKNHNGKLENVKLTLNLS  107 (125)
T ss_pred             EEEEEHHHhHhhcCCCccceEEEEEEE
Confidence            99999998621     1  23488885

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=1.6e-15  Score=145.63  Aligned_cols=165  Identities=19%  Similarity=0.243  Sum_probs=127.0

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~   83 (315)
                      ......|+|+|++|++|+.+|..|.+||||++++.   ..+.+|++.++++||.|||+|.|.+..   ....|.|.|||+
T Consensus       163 d~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~  242 (421)
T KOG1028|consen  163 DFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDF  242 (421)
T ss_pred             cccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEec
Confidence            34577899999999999999977789999999993   356699999999999999999999742   467899999999


Q ss_pred             CCCCCCceeEEEEEEcccCC--CcccEEEEccCC-------CceEEEEEEeecCccccccccccccccccccccccccCC
Q 021238           84 DIIWKSTVLGSVIVTVESEG--QTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQG  154 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~  154 (315)
                      |+++.+++||++.++|..+.  .....|.+|.+.       .|++.+.+.|.+....           ....-+++..+.
T Consensus       243 drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~-----------ltv~v~kar~L~  311 (421)
T KOG1028|consen  243 DRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGR-----------LTVVVIKARNLK  311 (421)
T ss_pred             CCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCe-----------EEEEEEEecCCC
Confidence            99999999999999998863  335789999742       2688888888776322           112223344555


Q ss_pred             CcccccCCCCceeeccCCcccceeecceeee
Q 021238          155 PTVVHQKPGPLQTIFNLLPDEFVELSYSCVI  185 (315)
Q Consensus       155 ~~~~~~k~~~f~~~F~lp~~E~l~~~~~c~l  185 (315)
                      ..+....+++|.+...++.+..+...-.+.-
T Consensus       312 ~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~  342 (421)
T KOG1028|consen  312 SMDVGGLSDPYVKVTLLDGDKRLSKKKTSVK  342 (421)
T ss_pred             cccCCCCCCccEEEEEecCCceeeeeeeecc
Confidence            5666677788988887777755554444433

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.66  E-value=1.4e-15  Score=122.20  Aligned_cols=102  Identities=19%  Similarity=0.270  Sum_probs=85.9

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V   80 (315)
                      .+..+.|.|+|++|++|++.+..+.+||||++.+.     ....+|++++++.||.|||+|.|.. ..   ....|.|+|
T Consensus        11 ~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v   90 (123)
T cd04035          11 DPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLV   90 (123)
T ss_pred             eCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEE
Confidence            34568899999999999999988999999999872     2357999999999999999999963 22   246899999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (315)
                      ||++.. .+++||++.++++++......|+.+
T Consensus        91 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~  121 (123)
T cd04035          91 LDEDRF-GNDFLGETRIPLKKLKPNQTKQFNI  121 (123)
T ss_pred             EEcCCc-CCeeEEEEEEEcccCCCCcceEeec
Confidence            999988 8899999999999987665666543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.65  E-value=4.4e-16  Score=127.68  Aligned_cols=104  Identities=17%  Similarity=0.277  Sum_probs=86.3

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|.|+|++|+||.+.+ .+.+||||++.+..     .+++|++++++.||.|||+|.|.+..   ....|.|+|
T Consensus        10 y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V   88 (137)
T cd08409          10 YNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSV   88 (137)
T ss_pred             ECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEE
Confidence            3456788999999999999999 88899999999831     35589999999999999999999863   246799999


Q ss_pred             EecCCCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                      ||++..+++++||++.++....  +.+..+|..+.
T Consensus        89 ~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~  123 (137)
T cd08409          89 MQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDML  123 (137)
T ss_pred             EeCCCCCCcceEEEEEECCcccCCChHHHHHHHHH
Confidence            9999999999999999986533  44456676664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.64  E-value=2.2e-15  Score=119.07  Aligned_cols=80  Identities=15%  Similarity=0.336  Sum_probs=70.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEec-------
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW-------   83 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~-------   83 (315)
                      |.|+|.+|+||+     +.+||||.+.++.     ...+|+++++|+||.|||+|.|.+.. ...|++.|||+       
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~   74 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKL   74 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEcccccccc
Confidence            689999999995     5699999998842     45799999999999999999999975 77999999998       


Q ss_pred             CCCCCCceeEEEEEEccc
Q 021238           84 DIIWKSTVLGSVIVTVES  101 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~  101 (315)
                      |..++|+++|.+.+.|+.
T Consensus        75 d~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          75 DGEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             cccCcccEEEEEEEEECH
Confidence            566789999999999875

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.64  E-value=6.8e-15  Score=121.21  Aligned_cols=99  Identities=23%  Similarity=0.285  Sum_probs=84.0

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEE-EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC--
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW--   87 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~-rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~--   87 (315)
                      .-...|.|.|++|++|++++     +|||.|.++.... ||+++.++.||.|+|.|.|........|.|.||+.+...  
T Consensus         8 R~~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013           8 RTENSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK   82 (146)
T ss_pred             EEEEEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence            34677999999999998865     8999999988875 999999999999999999987666678999998765322  


Q ss_pred             --CCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           88 --KSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        88 --~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                        ++++||.+.||+.++  +...+.||+|.+
T Consensus        83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence              578999999999997  456789999964

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.64  E-value=1.7e-15  Score=119.24  Aligned_cols=95  Identities=20%  Similarity=0.336  Sum_probs=79.3

Q ss_pred             EEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccCCCCCeecceEEEEecC-----CCcEEEEEEEecCC
Q 021238           17 KLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE-----LPVQIIVTIYDWDI   85 (315)
Q Consensus        17 ~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~tlnP~w~e~f~f~v~~-----~~~~L~~~V~d~d~   85 (315)
                      .+-.++|++|+..|..|.+||||++++..      ..++|+++++++||.|| +|.|.+.+     ....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            35567999999999999999999998843      24799999999999999 78887532     26789999999999


Q ss_pred             CCCCceeEEEEEEcccCCCcccEEEEc
Q 021238           86 IWKSTVLGSVIVTVESEGQTGAVWYTL  112 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (315)
                      .++|++||++.++++++......++.+
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~~~~~~~~  108 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKSSPLEFEL  108 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcCCCceEEe
Confidence            999999999999999986555555544

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.63  E-value=1.2e-14  Score=117.22  Aligned_cols=102  Identities=23%  Similarity=0.363  Sum_probs=85.4

Q ss_pred             eEEEEEEEEeecCCCCC--CCCCCceEEEEEE------CCEEEEeecccCCC-CCeecceEEEEecCC-CcEEEEEEEec
Q 021238           14 YLIKLELLAAKNLIGAN--LNGTSDPYAIITC------GSEKRFSSMVPGSR-YPMWGEEFNFSVDEL-PVQIIVTIYDW   83 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d--~~g~sDPyv~v~l------~~~~~rT~vi~~tl-nP~w~e~f~f~v~~~-~~~L~~~V~d~   83 (315)
                      ..|+|+|++|++|+..+  ..+.+||||++++      .....+|+++.++. ||.|+|+|.|.+..+ ...|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            46899999999999988  5889999999998      23457999988775 999999999998643 35699999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCc
Q 021238           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG  117 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G  117 (315)
                      +.. ++++||++.++++++.. ...|++|..+.|
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~-g~~~~~l~~~~~  113 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQ-GYRHVPLLDSKG  113 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcC-ceEEEEecCCCC
Confidence            987 89999999999999854 357889865333

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03008 Phospholipase D delta

Probab=99.62  E-value=3.6e-15  Score=149.77  Aligned_cols=119  Identities=18%  Similarity=0.331  Sum_probs=100.2

Q ss_pred             ceeEEEEEEEEeecCCCCCC------------------------------------------CCCCceEEEEEECCE-EE
Q 021238           12 SAYLIKLELLAAKNLIGANL------------------------------------------NGTSDPYAIITCGSE-KR   48 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~------------------------------------------~g~sDPyv~v~l~~~-~~   48 (315)
                      -.|.|.|+|.+|++|+.+|.                                          .+++||||+|.++.. ..
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            47899999999999986332                                          246799999999765 45


Q ss_pred             EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccC-------CCceE
Q 021238           49 FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS-------PSGQV  119 (315)
Q Consensus        49 rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~-------~~G~i  119 (315)
                      ||+++++++||+|||+|.|.+..+...|.|.|||+|.++ +++||++.+|+.++  +...+.|++|..       ..+++
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~kl  170 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETAI  170 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcEE
Confidence            999999999999999999999877789999999999986 58999999999997  455778999953       23688


Q ss_pred             EEEEEeecCccc
Q 021238          120 CLHIKTIKLPVN  131 (315)
Q Consensus       120 ~~~l~~~~~~~~  131 (315)
                      ++++.+.+....
T Consensus       171 ~v~lqf~pv~~~  182 (868)
T PLN03008        171 FIDMKFTPFDQI  182 (868)
T ss_pred             EEEEEEEEcccc
Confidence            999998877654

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.62  E-value=5.7e-15  Score=116.62  Aligned_cols=96  Identities=20%  Similarity=0.331  Sum_probs=82.1

Q ss_pred             CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCceeEEEEEEcccC---CCc
Q 021238           31 LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTVLGSVIVTVESE---GQT  105 (315)
Q Consensus        31 ~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l---~~~  105 (315)
                      .+|.+||||+++++.. ..+|+++.++.||.|||.|.|.+.+. ...|.|+|||++.. ++++||.+.++|.++   ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc
Confidence            5788999999999764 56999999999999999999999764 56799999999998 899999999999986   233


Q ss_pred             ccEEEEcc-CCCceEEEEEEeec
Q 021238          106 GAVWYTLD-SPSGQVCLHIKTIK  127 (315)
Q Consensus       106 ~~~w~~L~-~~~G~i~~~l~~~~  127 (315)
                      ...|++|+ .+.|++++++.+.+
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            57899997 34799988888765

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.60  E-value=1.6e-15  Score=145.88  Aligned_cols=118  Identities=30%  Similarity=0.502  Sum_probs=105.0

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCC--
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII--   86 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~--   86 (315)
                      ++.=...++++|++|++|...|-.|++||||.+.++..+.||+++...+||+|||.|.|++++....+++.|||.|..  
T Consensus       290 sskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~dlk  369 (1283)
T KOG1011|consen  290 SSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDNDLK  369 (1283)
T ss_pred             ccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCcccHH
Confidence            344456789999999999999999999999999999999999999999999999999999999889999999998842  


Q ss_pred             ---------CCCceeEEEEEEcccCCCcccEEEEccCC------CceEEEEEEee
Q 021238           87 ---------WKSTVLGSVIVTVESEGQTGAVWYTLDSP------SGQVCLHIKTI  126 (315)
Q Consensus        87 ---------~~dd~iG~~~i~l~~l~~~~~~w~~L~~~------~G~i~~~l~~~  126 (315)
                               ..|||+|++.|.+..+.+..+.||.|+++      +|.|++.|.++
T Consensus       370 sklrqkl~resddflgqtvievrtlsgemdvwynlekrtdksavsgairlhisve  424 (1283)
T KOG1011|consen  370 SKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRLHISVE  424 (1283)
T ss_pred             HHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchhhccceEEEEEEEE
Confidence                     35899999999999999999999999853      47777777654

>smart00568 GRAM domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Probab=99.56  E-value=7.1e-15  Score=103.39  Aligned_cols=59  Identities=36%  Similarity=0.693  Sum_probs=56.3

Q ss_pred             cCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCcee-EEEEecCceeEEEee
Q 021238          170 NLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQM-KVIIPIGDIDEIQRS  228 (315)
Q Consensus       170 ~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~-~~~i~~~~i~~i~k~  228 (315)
                      +||++|.++.+|.|+|++.++++|+||+|++++||+|..+++.+ +++||+.||..|+|.
T Consensus         1 ~l~~~E~l~~~~~C~l~~~~~~~G~lyiT~~~l~F~S~~~~~~~~~~~ipl~~I~~i~k~   60 (61)
T smart00568        1 KLPEEEKLIADYSCYLSRDGPVQGRLYISNYRLCFRSDLPGKLTPKVVIPLADITRIEKS   60 (61)
T ss_pred             CcCCCcEEEEEEEeEECCCccccEEEEEECCEEEEEccCCCCeeEEEEEEHHHeeEEEEC
Confidence            37899999999999999999999999999999999999999988 999999999999985

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.56  E-value=1.3e-14  Score=157.60  Aligned_cols=112  Identities=20%  Similarity=0.304  Sum_probs=97.1

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCC--CcEEEEEEEecCCCCC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWDIIWK   88 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~--~~~L~~~V~d~d~~~~   88 (315)
                      -.|.|+|+|++|.||.  +..|.+||||++.+++. +.+|++++++.||.|||.|+|.+.++  ..+|.++|||+|.+++
T Consensus      1978 ~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~k 2055 (2102)
T PLN03200       1978 LPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFGK 2055 (2102)
T ss_pred             CCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccCC
Confidence            3689999999999998  44799999999999855 77999999999999999999888764  4789999999999855


Q ss_pred             CceeEEEEEEcccC--CCcccEEEEccC---CCce---EEEEEEee
Q 021238           89 STVLGSVIVTVESE--GQTGAVWYTLDS---PSGQ---VCLHIKTI  126 (315)
Q Consensus        89 dd~iG~~~i~l~~l--~~~~~~w~~L~~---~~G~---i~~~l~~~  126 (315)
                      | .+|.+.+++.++  ++....||+|.+   +.|+   +.+++.|.
T Consensus      2056 d-~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~ 2100 (2102)
T PLN03200       2056 S-SLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWS 2100 (2102)
T ss_pred             C-CCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEec
Confidence            4 999999999997  566788999984   6788   77777764

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.51  E-value=1.7e-13  Score=101.53  Aligned_cols=81  Identities=26%  Similarity=0.491  Sum_probs=72.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCCCCCCce
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~~~~dd~   91 (315)
                      |+|+|++|++|...+..+..||||++.+..   ...+|+++.++.+|.|+|+|.|.+. .....|.|+|||++..+++++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988889999999999955   6689999999999999999999974 345569999999999988999


Q ss_pred             eEEEE
Q 021238           92 LGSVI   96 (315)
Q Consensus        92 iG~~~   96 (315)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00030 C2 C2 domain

Probab=99.39  E-value=4.2e-12  Score=95.83  Aligned_cols=97  Identities=30%  Similarity=0.574  Sum_probs=84.7

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECC-EEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCceeE
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGS-EKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKSTVLG   93 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd~iG   93 (315)
                      |.|.|++|++|......+..+|||.+.+.. ...+|+++.++.||.|++.|.|.+.. ....|.|+||+.+..+.+.+||
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            478999999998877778899999999976 78899999999999999999999976 6778999999999887789999


Q ss_pred             EEEEEcccCC---CcccEEEEc
Q 021238           94 SVIVTVESEG---QTGAVWYTL  112 (315)
Q Consensus        94 ~~~i~l~~l~---~~~~~w~~L  112 (315)
                      .+.+++.++.   .....|++|
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          81 EVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEeHHHhhhcCCcCcceecC
Confidence            9999999874   445667764

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.36  E-value=8.6e-12  Score=94.58  Aligned_cols=89  Identities=24%  Similarity=0.493  Sum_probs=79.3

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECCE---EEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCCce
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSE---KRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~---~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~dd~   91 (315)
                      |.|.|++|++|......+..+|||++.+...   ..+|+++.++.||.|+|+|.|.+... ...|.|+|||.+..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            7899999999998876678999999999654   68999999999999999999999776 7889999999998878999


Q ss_pred             eEEEEEEcccCCC
Q 021238           92 LGSVIVTVESEGQ  104 (315)
Q Consensus        92 iG~~~i~l~~l~~  104 (315)
                      +|.+.+++.++..
T Consensus        82 ~G~~~~~l~~~~~   94 (101)
T smart00239       82 IGQVTIPLSDLLL   94 (101)
T ss_pred             eEEEEEEHHHccc
Confidence            9999999988743

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.36  E-value=2.2e-12  Score=125.89  Aligned_cols=115  Identities=23%  Similarity=0.369  Sum_probs=101.4

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i   92 (315)
                      ..|.|.|.+|+||++.+..|.+||||.|.++.+ ..||.++.+++.|-|.|.|.|.+...-..|.|-|||.| ++.|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            358999999999999999999999999999765 55999999999999999999999887888999999999 8999999


Q ss_pred             EEEEEEcccC--CCcccEEEEccC------CCceEEEEEEeecCc
Q 021238           93 GSVIVTVESE--GQTGAVWYTLDS------PSGQVCLHIKTIKLP  129 (315)
Q Consensus        93 G~~~i~l~~l--~~~~~~w~~L~~------~~G~i~~~l~~~~~~  129 (315)
                      |.+.|.=.++  -++.+.|+.|.+      -.|++++++.+.+..
T Consensus        84 GKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~  128 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAI  128 (800)
T ss_pred             ceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEecccc
Confidence            9999988876  457889999974      248999888865443

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.8e-12  Score=124.68  Aligned_cols=105  Identities=26%  Similarity=0.442  Sum_probs=86.9

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE--C---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--G---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVT   79 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~   79 (315)
                      ++.+..|.|+|.|++|++|+.++..+.+||||++.+  +   ..+++|.+.++++||.|||+|.|.+..   ....|.++
T Consensus       292 ~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~  371 (421)
T KOG1028|consen  292 CYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELT  371 (421)
T ss_pred             EeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEE
Confidence            466778999999999999999999999999999988  2   345599999999999999999998863   24579999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCCCcccEEEEc
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL  112 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L  112 (315)
                      |||+|.++.+++||.+.+....-+....+|...
T Consensus       372 V~d~d~~~~~~~iG~~~lG~~~~~~~~~hW~~m  404 (421)
T KOG1028|consen  372 VWDHDTLGSNDLIGRCILGSDSTGEEVRHWQEM  404 (421)
T ss_pred             EEEcccccccceeeEEEecCCCCchHHHHHHHH
Confidence            999999999999999888877533333444433

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.29  E-value=2.8e-11  Score=98.13  Aligned_cols=89  Identities=18%  Similarity=0.263  Sum_probs=74.5

Q ss_pred             EEEEEEEEeecCCC--CCCCCC--CceEEEEEEC---CEEEEeecccCCCC--CeecceEEEEecC--------------
Q 021238           15 LIKLELLAAKNLIG--ANLNGT--SDPYAIITCG---SEKRFSSMVPGSRY--PMWGEEFNFSVDE--------------   71 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~--~d~~g~--sDPyv~v~l~---~~~~rT~vi~~tln--P~w~e~f~f~v~~--------------   71 (315)
                      .|+|.|.+|++++.  .+..|.  +||||+..+.   ..+++|.+..+++|  |.||+.|.|.+.-              
T Consensus         1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~   80 (133)
T cd08374           1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH   80 (133)
T ss_pred             CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence            37999999999654  344674  9999999984   45679999999999  9999999987642              


Q ss_pred             ----------CCcEEEEEEEecCCCCCCceeEEEEEEcccCC
Q 021238           72 ----------LPVQIIVTIYDWDIIWKSTVLGSVIVTVESEG  103 (315)
Q Consensus        72 ----------~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~  103 (315)
                                ....|.++|||.|.+++|++||++.++|..+.
T Consensus        81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~  122 (133)
T cd08374          81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILP  122 (133)
T ss_pred             ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcc
Confidence                      13459999999999999999999999999873

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=99.28  E-value=3.5e-11  Score=116.77  Aligned_cols=105  Identities=18%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             eeEEEEEEEEeecCCC-----CCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEE
Q 021238           13 AYLIKLELLAAKNLIG-----ANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY   81 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~-----~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~   81 (315)
                      ...|+|+|++|+++..     .+..+..||||+|.+     +....+|.+..|+.||.|||+|.|.+..+ -..|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            4679999999998751     123456899999998     33456788777899999999999999754 446999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      |+|..++++|+|++.+|+..+..+ -++++|..+.|.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G-yR~VpL~~~~g~  523 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG-IRAVPLYDERGK  523 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC-ceeEeccCCCcC
Confidence            999888999999999999998765 477788765654

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.20  E-value=6.4e-11  Score=121.51  Aligned_cols=108  Identities=22%  Similarity=0.368  Sum_probs=93.1

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCCC
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDII   86 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~~   86 (315)
                      .-.+.|.|+|.+.+|.||+..|.+|.+||||++.+... .++|+++++|+||.|||.|.+.+. .....+.+.|+|||..
T Consensus      1035 mv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd~~ 1114 (1227)
T COG5038        1035 MVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWDSG 1114 (1227)
T ss_pred             eecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecccC
Confidence            34578999999999999999999999999999999766 679999999999999999999997 4567899999999999


Q ss_pred             CCCceeEEEEEEcccCCCcc--cEEEEccCCC
Q 021238           87 WKSTVLGSVIVTVESEGQTG--AVWYTLDSPS  116 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l~~~~--~~w~~L~~~~  116 (315)
                      .+++.||.+.++|..+.+..  ..-.+|+++.
T Consensus      1115 ~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038        1115 EKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred             CCccccccccccHhhcCcCCccceeeeccCcc
Confidence            99999999999999984332  2335666543

>PLN02952 phosphoinositide phospholipase C

Probab=99.19  E-value=1.5e-10  Score=114.58  Aligned_cols=105  Identities=16%  Similarity=0.259  Sum_probs=85.0

Q ss_pred             eeEEEEEEEEeecCCCC------CCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~------d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V   80 (315)
                      ...|+|+|++|++|+..      +.....||||+|.+     +..+.+|+++.++.||.|||+|.|.+..+ -..|+|+|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999987531      22234599999988     34566999999999999999999998654 45699999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      ||+|..+.++|+|++.+|+..+..+. +|++|..+.|.
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~Gy-R~VpL~~~~G~  585 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPGI-RSVPLHDKKGE  585 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCCc-eeEeCcCCCCC
Confidence            99999889999999999999997654 69999755543

>PLN02270 phospholipase D alpha

Probab=99.14  E-value=5.4e-10  Score=112.81  Aligned_cols=119  Identities=18%  Similarity=0.291  Sum_probs=96.6

Q ss_pred             ceeEEEEEEEEeecCCCCC------------------CCCCCceEEEEEECCE-EEEeecccCC-CCCeecceEEEEecC
Q 021238           12 SAYLIKLELLAAKNLIGAN------------------LNGTSDPYAIITCGSE-KRFSSMVPGS-RYPMWGEEFNFSVDE   71 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d------------------~~g~sDPyv~v~l~~~-~~rT~vi~~t-lnP~w~e~f~f~v~~   71 (315)
                      -.|.|.|+|++|++|+..+                  ..+.+||||.|.++.. ..||+++.+. .||.|+|.|.+.+..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            4789999999999998632                  1246799999999655 4599999885 699999999999988


Q ss_pred             CCcEEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeecCccc
Q 021238           72 LPVQIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVN  131 (315)
Q Consensus        72 ~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~  131 (315)
                      ....+.|.|-|.|.++. .+||.+.+|+.++  +...+.|+++...       ..++++++.+.+....
T Consensus        86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~  153 (808)
T PLN02270         86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKD  153 (808)
T ss_pred             CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccC
Confidence            78999999999998865 5999999999997  5568899999532       2367788887765443

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.13  E-value=2.5e-10  Score=117.26  Aligned_cols=126  Identities=17%  Similarity=0.332  Sum_probs=100.6

Q ss_pred             CCCCCCCCCceeEEEEEEEEeecCCCCC--CCCCCceEEEEEEC-CEEEEeecccCCCCCeecceEEEEecCCCcEEEEE
Q 021238            3 QFKGDPQTNSAYLIKLELLAAKNLIGAN--LNGTSDPYAIITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (315)
Q Consensus         3 ~~~~~~~~~~~g~L~V~Ii~A~~L~~~d--~~g~sDPyv~v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~   79 (315)
                      |.+.+.+....|+|.|+|.+|++|...+  ..+..|||+.+... ....+|++.++++||+|||+|.+.+.....+|.++
T Consensus       425 ~~m~~~s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~Ls  504 (1227)
T COG5038         425 QIMAGDSGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLS  504 (1227)
T ss_pred             HhhccccCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEE
Confidence            3444557788999999999999999988  78999999999984 34459999999999999999999998888999999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCC---CcccEEEEcc---CCCceEEEEEEeecC
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEG---QTGAVWYTLD---SPSGQVCLHIKTIKL  128 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~---~~~G~i~~~l~~~~~  128 (315)
                      |||.+...+|+.+|.+.++|..+.   .....-+.+.   ...|++.-.+.+.+.
T Consensus       505 lyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~  559 (1227)
T COG5038         505 LYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPV  559 (1227)
T ss_pred             EEeccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecc
Confidence            999888889999999999998761   1122233332   234677666666654

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.13  E-value=3.3e-10  Score=111.92  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=84.3

Q ss_pred             eeEEEEEEEEeecCCCC------CCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGA------NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~------d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V   80 (315)
                      ...|.|+|+.+.++...      +..+..||||+|.+     +..+.+|++..++.||.|||+|.|.+.-+ -..|+|+|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987421      22345799999998     24456889888999999999999998643 56799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      +|+|..++++|+|+..+|+..+..+ -+.++|..+.|.
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G-yR~V~L~~~~G~  584 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQG-IHAVPLFNRKGV  584 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCc-cceEeccCCCcC
Confidence            9999988999999999999999765 446788665554

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.12  E-value=1.8e-11  Score=119.61  Aligned_cols=93  Identities=25%  Similarity=0.399  Sum_probs=82.6

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-------EEEEeecccCCCCCeecceEEEEecCC-----CcEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPGSRYPMWGEEFNFSVDEL-----PVQII   77 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-------~~~rT~vi~~tlnP~w~e~f~f~v~~~-----~~~L~   77 (315)
                      ..+.-.|.|.|+-|+++.+.|.+|.|||||+|.+..       ..++|+|+++|+||+|+|+|+|.|...     ...+.
T Consensus       943 ~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~ 1022 (1103)
T KOG1328|consen  943 NGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLH 1022 (1103)
T ss_pred             eccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEE
Confidence            455677899999999999999999999999999953       345999999999999999999999642     34599


Q ss_pred             EEEEecCCCCCCceeEEEEEEcccC
Q 021238           78 VTIYDWDIIWKSTVLGSVIVTVESE  102 (315)
Q Consensus        78 ~~V~d~d~~~~dd~iG~~~i~l~~l  102 (315)
                      |+|+|+|-++.+||-|++.+.|+++
T Consensus      1023 FTVMDHD~L~sNDFaGEA~L~Lg~v 1047 (1103)
T KOG1328|consen 1023 FTVMDHDYLRSNDFAGEAFLELGDV 1047 (1103)
T ss_pred             EEeeccceecccccchHHHHhhCCC
Confidence            9999999999999999999999997

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.11  E-value=1.6e-11  Score=119.98  Aligned_cols=117  Identities=27%  Similarity=0.484  Sum_probs=94.4

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC------C-------------------------EEEEeecccCCCCC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG------S-------------------------EKRFSSMVPGSRYP   59 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~------~-------------------------~~~rT~vi~~tlnP   59 (315)
                      ++...+.|.+.+|++|...|.+|.||||+++.+-      +                         -.+-|++.++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            4567788999999999999999999999998761      0                         01257888899999


Q ss_pred             eecceEEEEecCC-CcEEEEEEEecCC---------------------------------CCC---CceeEEEEEEcccC
Q 021238           60 MWGEEFNFSVDEL-PVQIIVTIYDWDI---------------------------------IWK---STVLGSVIVTVESE  102 (315)
Q Consensus        60 ~w~e~f~f~v~~~-~~~L~~~V~d~d~---------------------------------~~~---dd~iG~~~i~l~~l  102 (315)
                      +|+|.|.|++.+. ...+.+-+||+|.                                 .+.   |||+|++.|||.++
T Consensus       191 kW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~Ei  270 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEI  270 (1103)
T ss_pred             chhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcC
Confidence            9999999999764 5689999999982                                 133   89999999999998


Q ss_pred             -CCcccEEEEccCCC------ceEEEEEEeec
Q 021238          103 -GQTGAVWYTLDSPS------GQVCLHIKTIK  127 (315)
Q Consensus       103 -~~~~~~w~~L~~~~------G~i~~~l~~~~  127 (315)
                       ..+.++||.|++++      |++++.+.+..
T Consensus       271 P~~Gld~WFkLepRS~~S~VqG~~~LklwLsT  302 (1103)
T KOG1328|consen  271 PPDGLDQWFKLEPRSDKSKVQGQVKLKLWLST  302 (1103)
T ss_pred             CcchHHHHhccCcccccccccceEEEEEEEee
Confidence             45678999999753      77777766543

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=99.08  E-value=6.1e-10  Score=85.53  Aligned_cols=82  Identities=15%  Similarity=0.255  Sum_probs=70.2

Q ss_pred             EEEEEEEeecCCCCC---CCCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCce
Q 021238           16 IKLELLAAKNLIGAN---LNGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTV   91 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d---~~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~   91 (315)
                      |.|+|.+|+|+...+   +.+.+||||.++++.. +.||++.   .||.|||+|.|++. ....+.+.|||... ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            679999999999988   6788999999999766 7788874   79999999999995 47889999999864 34568


Q ss_pred             eEEEEEEcccC
Q 021238           92 LGSVIVTVESE  102 (315)
Q Consensus        92 iG~~~i~l~~l  102 (315)
                      ||...+.++++
T Consensus        76 i~llW~~~sdi   86 (109)
T cd08689          76 VGLLWLRLSDI   86 (109)
T ss_pred             eeeehhhHHHH
Confidence            99999999885

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.07  E-value=1.8e-09  Score=106.57  Aligned_cols=105  Identities=14%  Similarity=0.226  Sum_probs=83.5

Q ss_pred             eeEEEEEEEEeecCC----C--CCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEE
Q 021238           13 AYLIKLELLAAKNLI----G--ANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTI   80 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~----~--~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V   80 (315)
                      ...|+|+|+.|+++.    .  .+.....||||+|.+     +..+.+|+++.++.||.|+|+|.|.+..+ -..|+|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            467999999998753    1  122345799999998     24567999999999999999999998643 46799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      ||+|..+.++|+|++.+|+..+..+ -+.++|..+.|.
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G-yR~V~L~~~~g~  567 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG-IRAFPLHSRKGE  567 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc-cceEEccCCCcC
Confidence            9999888899999999999999765 446677655543

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.06  E-value=5e-10  Score=111.06  Aligned_cols=104  Identities=21%  Similarity=0.326  Sum_probs=83.3

Q ss_pred             EEEEEEEEeecCCCCC-C---CCCCceEEEEEE-----CCEEEEeeccc-CCCCCeecceEEEEecCC-CcEEEEEEEec
Q 021238           15 LIKLELLAAKNLIGAN-L---NGTSDPYAIITC-----GSEKRFSSMVP-GSRYPMWGEEFNFSVDEL-PVQIIVTIYDW   83 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d-~---~g~sDPyv~v~l-----~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~   83 (315)
                      .|+|.|+++.++.+.. .   ...+||||.|.+     +....+|+++. ++.||.|+|+|+|.+..+ -..|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            7999999999766532 2   245899999998     23456999555 779999999999999754 56799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCceE
Q 021238           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQV  119 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~i  119 (315)
                      |..++|||+|+..+|+..+..+. +-++|..+.|+.
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~Gy-RhVpL~~~~G~~  731 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGY-RHVPLLSREGEA  731 (746)
T ss_pred             CCCCcccccceeeccHHHhhCce-eeeeecCCCCcc
Confidence            99999999999999999997653 456776666664

>PLN02228 Phosphoinositide phospholipase C

Probab=99.04  E-value=3.4e-09  Score=104.43  Aligned_cols=105  Identities=12%  Similarity=0.197  Sum_probs=82.7

Q ss_pred             eeEEEEEEEEeecCC---CC---CCCCCCceEEEEEE-----CCEEEEeecccCCCCCee-cceEEEEecCC-CcEEEEE
Q 021238           13 AYLIKLELLAAKNLI---GA---NLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW-GEEFNFSVDEL-PVQIIVT   79 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~---~~---d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w-~e~f~f~v~~~-~~~L~~~   79 (315)
                      ...|+|+|++|++|+   +.   +.....||||+|.+     +..+.+|+++.++.||.| +|+|.|.+..+ -.-|+|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            347999999999873   11   22344799999998     334569999998899999 99999998643 4579999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      |+|+|..+.++|+|++.+|+..+..+ -+.++|..+.|+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G-YR~VpL~~~~G~  547 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG-VRAVRLHDRAGK  547 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC-eeEEEccCCCCC
Confidence            99999888899999999999999654 456688654443

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.87  E-value=5.7e-09  Score=100.36  Aligned_cols=112  Identities=18%  Similarity=0.329  Sum_probs=93.5

Q ss_pred             eEEEEEEEEeecCCCCCCCC-CCceEEEEEECCEEEEeecccCCCCCeec-ceEEEEecC---CCcEEEEEEEecCCCCC
Q 021238           14 YLIKLELLAAKNLIGANLNG-TSDPYAIITCGSEKRFSSMVPGSRYPMWG-EEFNFSVDE---LPVQIIVTIYDWDIIWK   88 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g-~sDPyv~v~l~~~~~rT~vi~~tlnP~w~-e~f~f~v~~---~~~~L~~~V~d~d~~~~   88 (315)
                      |+|.|.|..|++|+-+|..+ ..|.||.+++.+..++|.+..+++||.|| +.|.|++.+   .+.+|.+.+.|+|..+.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            68899999999999998543 47999999999999999999999999999 779999975   36789999999999999


Q ss_pred             CceeEEEEEEcccC------------CCcccEEEEccC----CCceEEEEEEe
Q 021238           89 STVLGSVIVTVESE------------GQTGAVWYTLDS----PSGQVCLHIKT  125 (315)
Q Consensus        89 dd~iG~~~i~l~~l------------~~~~~~w~~L~~----~~G~i~~~l~~  125 (315)
                      +|-||.+.|.++.+            +.-...|+|+-.    -.|+|.+.+++
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkv  135 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKV  135 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEE
Confidence            99999999999875            122457999853    34776655553

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.73  E-value=5.2e-08  Score=96.87  Aligned_cols=99  Identities=15%  Similarity=0.260  Sum_probs=79.3

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEE-EeecccCCCCCeec-ceEEEEecCC-CcEEEEEEEecC
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKR-FSSMVPGSRYPMWG-EEFNFSVDEL-PVQIIVTIYDWD   84 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~-rT~vi~~tlnP~w~-e~f~f~v~~~-~~~L~~~V~d~d   84 (315)
                      ...|.|.|+.|+.|+... .|...|||.|.+     +..++ +|.|+.|++||+|| |+|+|.+.++ -.-|+|.|+|.|
T Consensus      1064 p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1064 PMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEED 1142 (1267)
T ss_pred             ceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccc
Confidence            467899999999998543 455679999998     33444 55667799999999 9999999765 557999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (315)
                      .++...|||++..|+..+..+ -.-++|.
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~G-fRsVpLk 1170 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSG-FRSVPLK 1170 (1267)
T ss_pred             ccCCcceeeeeecchhhhhcc-ceeeecc
Confidence            999989999999999987543 2345664

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.68  E-value=1.2e-08  Score=103.40  Aligned_cols=97  Identities=22%  Similarity=0.431  Sum_probs=84.6

Q ss_pred             CCCCCC-CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEE--EeecccCCCCCeecceEEEEecC-CCcEEEEEE
Q 021238            5 KGDPQT-NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKR--FSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTI   80 (315)
Q Consensus         5 ~~~~~~-~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~--rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V   80 (315)
                      .+.++. +-...++|+|++|-+|.+.|.+|.+|||+++.++....  ++..+.+|+||+|.+.|.+...- ....|.++|
T Consensus       603 ~~~~~~~pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~v  682 (1105)
T KOG1326|consen  603 LDLPKEEPIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEV  682 (1105)
T ss_pred             hcccccCcceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEE
Confidence            344445 44677889999999999999999999999999987764  78899999999999999998764 366799999


Q ss_pred             EecCCCCCCceeEEEEEEccc
Q 021238           81 YDWDIIWKSTVLGSVIVTVES  101 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~  101 (315)
                      ||+|..++|+.||+..++|+.
T Consensus       683 yd~D~~~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  683 YDHDLEAQDEKIGETTIDLEN  703 (1105)
T ss_pred             EEeecccccchhhceehhhhh
Confidence            999999999999999999986

>KOG1032 consensus Uncharacterized conserved protein, contains GRAM domain [Function unknown]

Probab=98.61  E-value=1.2e-07  Score=94.61  Aligned_cols=276  Identities=25%  Similarity=0.252  Sum_probs=182.4

Q ss_pred             CCCCCCCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEE
Q 021238            3 QFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIY   81 (315)
Q Consensus         3 ~~~~~~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~   81 (315)
                      ..++.......+...+..+.+.++.....++.++|+..+..........+.....+|.|++.+.|.-... -....+..+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~n~~~~~~~l~~~~~cal~reillQGrmyis~~~icF~s~i~gw~~~~vIpf  165 (590)
T KOG1032|consen   86 GLKGSPKTEKGYIGSSALLAGVNLASEFLNGVPDPEILLTDYSCALQREILLQGRMYISEEHICFNSNIFGWETKVVIPF  165 (590)
T ss_pred             CCCcccccCccccchhhhhcchhhhhhhhhcCCCcceeeeecchhhccccccccccccccceeeecccccCccceeEEee
Confidence            3455555666677777777777777766677889999998877777788888899999999999975432 234455566


Q ss_pred             ecCCC-CCCceeEEEEEEccc-CCCcccEEEEccCCCceEE---EEEEeecCccccccccccccccccccccccccCCCc
Q 021238           82 DWDII-WKSTVLGSVIVTVES-EGQTGAVWYTLDSPSGQVC---LHIKTIKLPVNASRVMNGYAGANARRRASLDKQGPT  156 (315)
Q Consensus        82 d~d~~-~~dd~iG~~~i~l~~-l~~~~~~w~~L~~~~G~i~---~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~~~  156 (315)
                      +++.. .+..-.|.+...+.- .......|..|..+.+.-.   +.+.....+....++..+++....... .-+.+.+.
T Consensus       166 ~eI~~ikk~~tag~fpn~i~i~t~~~ky~f~s~~Srda~~~~~~~~~~~~~~~s~s~~~~~~~l~~~~~~~-~~~~~~~~  244 (590)
T KOG1032|consen  166 DEITLIKKTKTAGIFPNAIEITTGTTKYIFVSLLSRDATYKLIKLLLHKFLDSSGSPRADSDYLSSVEPEV-NDDQQGNV  244 (590)
T ss_pred             eeeeeeehhhhccCCCcceEEecCCCcceeeecccCccHHHHHHHhhhhcccccCCccccchhcccCCCCc-Cccccccc
Confidence            65432 222333433322222 2445567888887665433   222222222222222333333221111 11113345


Q ss_pred             ccccCCCCceeeccCCcccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCc
Q 021238          157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPA  236 (315)
Q Consensus       157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~  236 (315)
                      +..+.+..+...|++|.+|.+...++|.+.+..+++|+++++....+|++..||..+++...++++..++-.......+.
T Consensus       245 ~~~~~~s~~~~s~~~~~~e~~~~~~~~~~~~~~~v~~~~~~s~~~~~~~~~lf~d~~~~~~~l~~~~~~~vs~~~~~~~~  324 (590)
T KOG1032|consen  245 DNSQSPSALQNSFDSPKEEELEHDFSCSLSRLFGVLGRLPFSAPIGAFFSLLFGDNTFFFFFLEDQDEIQVSPIPWKGPR  324 (590)
T ss_pred             ccCCCccccccccCCCccccccccccccccccccccccccccccccccceeeccCcceeeeccccccccccccccccCCC
Confidence            66778889999999999999999999999999999999999999999999999999999999999999999887777776


Q ss_pred             ---EEEEEecCCCCCCCCCCCCCC--CceEEEEeeecchHHHHHHHHHHHH
Q 021238          237 ---ITIILRMGAGGHGVPPLGSPD--GRVRYKFASFWNRNHALRQLQRTAK  282 (315)
Q Consensus       237 ---i~i~~~~g~~~~~~~~~~~~~--~~~~~~F~sf~~rd~~~~~l~~~~~  282 (315)
                         ...+...+.|+|+..+-.++.  +...+.|..+...   ++++....-
T Consensus       325 ~~~~~r~~~y~~~l~~~~gPk~t~~~~~~~l~~~~~~~~---~~vls~t~~  372 (590)
T KOG1032|consen  325 SGILLRTLSYTKGLPAKSGPKSTDCEGTQTLHHQDLEKY---FRVLSETLT  372 (590)
T ss_pred             ccceeEeccCCccCCCcCCCccccccceeeEEeccchhh---hhhhheecc
Confidence               444444444466655533333  5566777776653   444444433

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.58  E-value=1.7e-07  Score=92.26  Aligned_cols=105  Identities=24%  Similarity=0.419  Sum_probs=79.5

Q ss_pred             EEeecCCCCCCCCCCceEEEEEECCEE----EEeecccCCCCCeecceEEEEecCC----------------CcEEEEEE
Q 021238           21 LAAKNLIGANLNGTSDPYAIITCGSEK----RFSSMVPGSRYPMWGEEFNFSVDEL----------------PVQIIVTI   80 (315)
Q Consensus        21 i~A~~L~~~d~~g~sDPyv~v~l~~~~----~rT~vi~~tlnP~w~e~f~f~v~~~----------------~~~L~~~V   80 (315)
                      ++++++.|.+ ++.+|||+++......    .+|.++++|.+|.|+|.|.|.+...                -..|++.+
T Consensus       138 L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~l  216 (800)
T KOG2059|consen  138 LKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDL  216 (800)
T ss_pred             hhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEee
Confidence            4555666655 6679999999884332    4999999999999999999988532                23589999


Q ss_pred             Ee-cCCCCCCceeEEEEEEcccC--CCcccEEEEccCC-----------CceEEEEEEee
Q 021238           81 YD-WDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-----------SGQVCLHIKTI  126 (315)
Q Consensus        81 ~d-~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-----------~G~i~~~l~~~  126 (315)
                      |+ ++....++|+|++.+++...  ......||-|+++           -|.+++.+.+.
T Consensus       217 W~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  217 WNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             ccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEee
Confidence            98 56666699999999999886  4566789999752           15566666544

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=98.57  E-value=3.8e-08  Score=96.22  Aligned_cols=108  Identities=20%  Similarity=0.318  Sum_probs=90.1

Q ss_pred             ccccCCCCceeeccCCcccceeecceeeeee---ecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccc
Q 021238          157 VVHQKPGPLQTIFNLLPDEFVELSYSCVIER---SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFI  233 (315)
Q Consensus       157 ~~~~k~~~f~~~F~lp~~E~l~~~~~c~l~~---~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~  233 (315)
                      +.+.+++.| .+|++|  |++.....|.++.   ....+|+||+|.+|+||.|..+. -+.+++|+..|..|++.+....
T Consensus         5 ~ar~~s~~f-~~Frlp--e~l~~~~~~~l~~p~s~~~~~G~l~~s~~f~cF~s~~~~-~c~~~~Pl~~vr~ve~~~~ss~   80 (671)
T KOG4347|consen    5 DARLKSEDF-AFFRLP--EKLDGSTMCNLWTPYSRYHEQGRLFLSTNFICFASDTEW-LCSFITPLLAVRSVERLDDSSL   80 (671)
T ss_pred             hhhhccccc-ceeecc--hhcCceeecccCCCcchhhccceeeeccceEEeecCCcc-cceEeeehhhhhhhhccCcccc
Confidence            456678889 999999  9999999999987   45578999999999999999976 5899999999999999985444


Q ss_pred             cC-cEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHHHHh
Q 021238          234 NP-AITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRTAKN  283 (315)
Q Consensus       234 ~~-~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~~~~  283 (315)
                      ++ -|.++|+               +...+.|..+.+|+..+--+..+...
T Consensus        81 ~~~~i~~~~~---------------~~~~~~f~~~~~r~~~~~k~~~~~~~  116 (671)
T KOG4347|consen   81 FTQLISLFTS---------------NMVGMRFGGLTERLKLLSKLHLPPAR  116 (671)
T ss_pred             chhhhHHhhc---------------CcceEEecchhhHHHHHHHHhchHhh
Confidence            55 5777775               45789999999999987766665543

>PLN02352 phospholipase D epsilon

Probab=98.48  E-value=1.3e-06  Score=88.43  Aligned_cols=112  Identities=12%  Similarity=0.142  Sum_probs=83.9

Q ss_pred             ceeEEEEEEEEeecCCCC----CC-CCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCC-cEEEEEEEecC
Q 021238           12 SAYLIKLELLAAKNLIGA----NL-NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELP-VQIIVTIYDWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~----d~-~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~-~~L~~~V~d~d   84 (315)
                      -.|.|.++|.+|+-+...    +. ....||||.|.++... .||   .+..||.|+|.|.+.+.... ..+.|.|-|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            479999999999844332    11 1123999999996554 488   55669999999999997655 689999987  


Q ss_pred             CCCCCceeEEEEEEcccC--CCc-ccEEEEccCC-----C-ceEEEEEEeecCccc
Q 021238           85 IIWKSTVLGSVIVTVESE--GQT-GAVWYTLDSP-----S-GQVCLHIKTIKLPVN  131 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~-~~~w~~L~~~-----~-G~i~~~l~~~~~~~~  131 (315)
                         ...+||.+.+|+.++  +.. .+.|+++...     . .++++++.+.+....
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  135 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAELE  135 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhhC
Confidence               367999999999997  323 7899999532     2 367788887766544

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.39  E-value=7.2e-07  Score=86.48  Aligned_cols=175  Identities=14%  Similarity=0.144  Sum_probs=119.4

Q ss_pred             CCCCCCCCCCceEEEEEEC-------------------CEEEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCC
Q 021238           26 LIGANLNGTSDPYAIITCG-------------------SEKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI   85 (315)
Q Consensus        26 L~~~d~~g~sDPyv~v~l~-------------------~~~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~   85 (315)
                      +...|..+++||-|.+...                   ....+|+++.+.+||.|.+.|.+.+. +..+.|++.++|.+.
T Consensus         2 ~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~   81 (529)
T KOG1327|consen    2 LMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDS   81 (529)
T ss_pred             ccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCC
Confidence            4455667777777776541                   12238999999999999999999874 668889999999874


Q ss_pred             C----CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEeecCccccccccccccccccccccccccCCC
Q 021238           86 I----WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (315)
Q Consensus        86 ~----~~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~~  155 (315)
                      .    ..++|+|++.+.+..+......-.+|..      ..|.+.+...    .....+       ...+......+++.
T Consensus        82 ~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~~~~g~iti~ae----e~~~~~-------~~~~~~~~~~~ld~  150 (529)
T KOG1327|consen   82 RTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKNAGSGTITISAE----EDESDN-------DVVQFSFRAKNLDP  150 (529)
T ss_pred             ccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCccCCcccEEEEee----cccccC-------ceeeeeeeeeecCc
Confidence            4    4579999999999987433332222221      2343333322    222111       11222233467789


Q ss_pred             cccccCCCCceeeccCC---------cccceeecceeeeee-ecccc----eeEEeecceeeeeecCCCc
Q 021238          156 TVVHQKPGPLQTIFNLL---------PDEFVELSYSCVIER-SFLYH----GRMYVSAWHICFHSNAFSR  211 (315)
Q Consensus       156 ~~~~~k~~~f~~~F~lp---------~~E~l~~~~~c~l~~-~~~~~----G~lyis~~~~cF~s~~~g~  211 (315)
                      +++..++++|...++.-         ..|.+.++.++.|.. .++.+    +.+-.+...+|++.+..|+
T Consensus       151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             ccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCCCC
Confidence            99999999999999553         238899999999988 55555    5556777788999888775

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=4.7e-07  Score=82.25  Aligned_cols=101  Identities=18%  Similarity=0.299  Sum_probs=82.3

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~   81 (315)
                      .....-+.|+++.|..|..+|.+|-+||||..++.     ..+++|.+.+++++|.|++.|.+++.+   ....+.+.||
T Consensus       229 ~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvg  308 (362)
T KOG1013|consen  229 SSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVG  308 (362)
T ss_pred             CcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeec
Confidence            34466688999999999999999999999999983     235599999999999999999999864   3567999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEE
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWY  110 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~  110 (315)
                      |++.....+++|-....+...+.-.+.|.
T Consensus       309 d~~~G~s~d~~GG~~~g~~rr~~v~~h~g  337 (362)
T KOG1013|consen  309 DYDIGKSNDSIGGSMLGGYRRGEVHKHWG  337 (362)
T ss_pred             ccCCCcCccCCCcccccccccchhhcCcc
Confidence            99987788899987776665544444443

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.26  E-value=8.2e-07  Score=91.61  Aligned_cols=103  Identities=18%  Similarity=0.278  Sum_probs=85.4

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEEe
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYD   82 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~d   82 (315)
                      ..|+|.|-|.-|++|.-..-+..+||||+.++.     ..+.+|+++++|.||.|||....+- ..   ..+.|.+.||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            468899999999999766657789999999992     3456999999999999999988872 21   24679999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC--CcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~  114 (315)
                      .+....+.|+|.+.|+|.++.  .+...||.|..
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence            999888999999999999864  44458999964

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=9e-06  Score=79.64  Aligned_cols=101  Identities=18%  Similarity=0.318  Sum_probs=82.6

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C------CEEEEeecccCCCCCeecceEEEEecCC----CcEEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVPGSRYPMWGEEFNFSVDEL----PVQIIVTIY   81 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~------~~~~rT~vi~~tlnP~w~e~f~f~v~~~----~~~L~~~V~   81 (315)
                      +..++|.|+.|.+|+-.. .|.--|||.+.+ +      ..+..|+...++..|.|||+|.|-+...    .-.|.|.|-
T Consensus      1124 ehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            567889999999998764 778899999988 2      3345788888999999999999998642    235999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      |+.-...|..+|.+.++|.++  .+....|++|..
T Consensus      1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            988666789999999999997  455678999964

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.88  E-value=2.6e-05  Score=62.12  Aligned_cols=97  Identities=20%  Similarity=0.324  Sum_probs=72.8

Q ss_pred             EEEEEEEeecCCCCC-----------C--CCCCceEEEEEE----CCEEEEeecccCCCCCeecceEEEEec--------
Q 021238           16 IKLELLAAKNLIGAN-----------L--NGTSDPYAIITC----GSEKRFSSMVPGSRYPMWGEEFNFSVD--------   70 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d-----------~--~g~sDPyv~v~l----~~~~~rT~vi~~tlnP~w~e~f~f~v~--------   70 (315)
                      |.|.|++|.+|+...           .  .-.-++||.+.+    +.+..+|+++.++-.|.|+..++|.+.        
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            467888998887421           1  112489999986    456679999999999999999999764        


Q ss_pred             C--------CCcEEEEEEEecCC----------CCCCceeEEEEEEcccC---CCcccEEEEc
Q 021238           71 E--------LPVQIIVTIYDWDI----------IWKSTVLGSVIVTVESE---GQTGAVWYTL  112 (315)
Q Consensus        71 ~--------~~~~L~~~V~d~d~----------~~~dd~iG~~~i~l~~l---~~~~~~w~~L  112 (315)
                      +        ....+.|+||+...          ..+|-.+|.+.||+.++   ..+...||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            1        12348999999762          23466899999999996   5667889875

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.83  E-value=2.4e-05  Score=58.05  Aligned_cols=93  Identities=18%  Similarity=0.218  Sum_probs=68.2

Q ss_pred             EEEEEEeecCCCCCCCCC-CceEEE--EEEC-CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCCC
Q 021238           17 KLELLAAKNLIGANLNGT-SDPYAI--ITCG-SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        17 ~V~Ii~A~~L~~~d~~g~-sDPyv~--v~l~-~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~d   89 (315)
                      -|+++.|++|.-....|. +.-|++  +.+. ....+|.+.....||.|.|+|.|.+..   .+..|.|.|+.  .+.+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            478999999975432222 233444  2333 445699999999999999999998853   35679999998  45678


Q ss_pred             ceeEEEEEEcccCCC-cccEEEE
Q 021238           90 TVLGSVIVTVESEGQ-TGAVWYT  111 (315)
Q Consensus        90 d~iG~~~i~l~~l~~-~~~~w~~  111 (315)
                      +.||++.+.++++++ +..+|.+
T Consensus        80 e~iG~~sL~l~s~geeE~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHHHhhhhhc
Confidence            899999999999854 4566754

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.77  E-value=3.8e-05  Score=74.71  Aligned_cols=83  Identities=24%  Similarity=0.314  Sum_probs=67.1

Q ss_pred             EEEeecCCCCCCCCCCceEEEEEEC---C---EEEEeecccCCCCCeecceEEEEec-----CCCcEEEEEEEecCCCCC
Q 021238           20 LLAAKNLIGANLNGTSDPYAIITCG---S---EKRFSSMVPGSRYPMWGEEFNFSVD-----ELPVQIIVTIYDWDIIWK   88 (315)
Q Consensus        20 Ii~A~~L~~~d~~g~sDPyv~v~l~---~---~~~rT~vi~~tlnP~w~e~f~f~v~-----~~~~~L~~~V~d~d~~~~   88 (315)
                      .++|++|.++|.++++|||..++-.   .   ..++|++++++++|.|.+ |.+...     +...++.+.+||++..++
T Consensus       142 ~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  142 SFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             eeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCC
Confidence            3558999999999999999988652   1   234999999999999954 444432     456789999999999999


Q ss_pred             CceeEEEEEEcccCC
Q 021238           89 STVLGSVIVTVESEG  103 (315)
Q Consensus        89 dd~iG~~~i~l~~l~  103 (315)
                      +++||.+..++.++.
T Consensus       221 ~~~ig~~~tt~~~~~  235 (529)
T KOG1327|consen  221 HDLIGKFQTTLSELQ  235 (529)
T ss_pred             cCceeEecccHHHhc
Confidence            999999999988763

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=1.9e-05  Score=73.14  Aligned_cols=103  Identities=15%  Similarity=0.249  Sum_probs=85.2

Q ss_pred             ceeEEEEEEEEeecCCCCCC-CCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE-ecC
Q 021238           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~-d~d   84 (315)
                      ..|.|.|.|++|++|..+.- ...++|||+|++-  .   .+.+|+...+|++|.+.....|+-..+...|.+.|| |+.
T Consensus       267 ~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~gdyg  346 (405)
T KOG2060|consen  267 SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWGDYG  346 (405)
T ss_pred             ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEecccc
Confidence            47889999999999987653 3368999999982  1   234888899999999988888887777888999999 688


Q ss_pred             CCCCCceeEEEEEEcccCC---CcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESEG---QTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~---~~~~~w~~L~~  114 (315)
                      ++..+.|+|.+++-+++++   .....||+|-+
T Consensus       347 Rmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  347 RMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            8888999999999999973   35678999965

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.74  E-value=4.8e-06  Score=75.78  Aligned_cols=93  Identities=18%  Similarity=0.203  Sum_probs=76.4

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEe--cC--CCcEEEEEEEe
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV--DE--LPVQIIVTIYD   82 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v--~~--~~~~L~~~V~d   82 (315)
                      ....+..++..|++|++++.++..|||+.+.+.     ..+.+|++..+++||.|+|+-....  .+  ....+++.|.|
T Consensus        91 ~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcd  170 (362)
T KOG1013|consen   91 ESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCD  170 (362)
T ss_pred             hhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeecc
Confidence            455678999999999999999999999999883     2346888999999999998876653  22  13458889999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQ  104 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~  104 (315)
                      .+.+..++++|+..+++..+.+
T Consensus       171 n~~~~~~~sqGq~r~~lkKl~p  192 (362)
T KOG1013|consen  171 NDKKTHNESQGQSRVSLKKLKP  192 (362)
T ss_pred             CcccccccCcccchhhhhccCh
Confidence            9999999999999988887643

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.73  E-value=5.2e-06  Score=84.75  Aligned_cols=105  Identities=17%  Similarity=0.213  Sum_probs=84.5

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEec----------CCCcEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD----------ELPVQIIV   78 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~----------~~~~~L~~   78 (315)
                      +......+++.|.+|+.|...|..+.+|||+.+..-.+.+.|.++.+|+||.|+.+..|.-.          .....+.|
T Consensus       201 ~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~  280 (1105)
T KOG1326|consen  201 SEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVF  280 (1105)
T ss_pred             chhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEE
Confidence            34456677888899999999999999999999999888999999999999999999988521          12334889


Q ss_pred             EEEecCCCCCCceeEEEEEEcccC-CCcccEEEEcc
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESE-GQTGAVWYTLD  113 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (315)
                      +|||.|+.+.++|+|.......-. ..+.-.|+++-
T Consensus       281 e~yd~dr~g~~ef~gr~~~~p~V~~~~p~lkw~p~~  316 (1105)
T KOG1326|consen  281 EVYDLDRSGINEFKGRKKQRPYVMVQCPALKWVPTM  316 (1105)
T ss_pred             EeehhhhhchHHhhcccccceEEEecCCccceEEee
Confidence            999999999999999976654332 34556787774

>PLN02964 phosphatidylserine decarboxylase

Probab=97.68  E-value=7.7e-05  Score=75.13  Aligned_cols=83  Identities=14%  Similarity=0.269  Sum_probs=69.8

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEE-EEEECCEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEecCCCCCCc
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYA-IITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv-~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d~~~~dd   90 (315)
                      .|.+.+++++|+    ++   ..|||. ++.++.+.+||.+.++|+||+||+...|.+.+ ...-.++.|||.+.+++++
T Consensus        53 ~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~n~  125 (644)
T PLN02964         53 SGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLSKNT  125 (644)
T ss_pred             cCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCCHHH
Confidence            688889999987    33   358864 56789999999999999999999998888854 2334699999999999999


Q ss_pred             eeEEEEEEcccC
Q 021238           91 VLGSVIVTVESE  102 (315)
Q Consensus        91 ~iG~~~i~l~~l  102 (315)
                      ++|.+.++|.+.
T Consensus       126 lv~~~e~~~t~f  137 (644)
T PLN02964        126 LVGYCELDLFDF  137 (644)
T ss_pred             hhhheeecHhhc
Confidence            999999988765

>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C

Probab=97.33  E-value=0.00041  Score=53.97  Aligned_cols=88  Identities=22%  Similarity=0.338  Sum_probs=62.3

Q ss_pred             eeecceeeeee-ecccceeEEeecceeeeeec---------------CCCceeEEEEecCceeEEEeeccccccCcEEEE
Q 021238          177 VELSYSCVIER-SFLYHGRMYVSAWHICFHSN---------------AFSRQMKVIIPIGDIDEIQRSQHAFINPAITII  240 (315)
Q Consensus       177 l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~---------------~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (315)
                      +.-.+.|.+-. ...+.|.+.++.+++.|..+               .........+|+.||..|.+..-..=.-||+|.
T Consensus         2 i~~s~~c~~I~~~~~~~G~l~i~~~~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyllr~~AlEiF   81 (106)
T PF14844_consen    2 ILLSVPCELITPLDSIPGTLIITKSSIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYLLRDTALEIF   81 (106)
T ss_dssp             -SEEEEEEEEETTEEEEEEEEE-SSEEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEETTEEEEEEEE
T ss_pred             EEEEEEEEEEEeeeeEEEEEEEeCCEEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhcCcceEEEEE
Confidence            44568899987 45567999999999999876               233345688999999999987754333399999


Q ss_pred             EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHH
Q 021238          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQL  277 (315)
Q Consensus       241 ~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l  277 (315)
                      +.+|             ....+.|.+...||++|+.|
T Consensus        82 ~~dg-------------~s~f~~F~~~~~R~~v~~~l  105 (106)
T PF14844_consen   82 FSDG-------------RSYFFNFESKKERDEVYNKL  105 (106)
T ss_dssp             ETTS--------------EEEEE-SSHHHHHHHHCCS
T ss_pred             EcCC-------------cEEEEEcCCHHHHHHHHHhh
Confidence            9876             44566677778899888654

>PF14470 bPH_3: Bacterial PH domain

Probab=97.30  E-value=0.0071  Score=45.68  Aligned_cols=89  Identities=18%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             CCcccceeecceeeeee-ecccceeEEeecceeeeeecC-CCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCC
Q 021238          171 LLPDEFVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA-FSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGH  248 (315)
Q Consensus       171 lp~~E~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~-~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~  248 (315)
                      |.++|.+.....|.+.. .-...|-+.+|...+-|.+.. ++......|||++|.+|+..+.. +...|.|.+       
T Consensus         1 L~~~E~I~~~~~~~~~~~~~~~~g~l~~TnkRlif~~~~~~~~~~~~~i~y~~I~~v~~~~g~-~~~~i~i~~-------   72 (96)
T PF14470_consen    1 LKEDEEIEYVAVGSYNYFFTSFPGVLVLTNKRLIFYSKGMFGGKKFESIPYDDITSVSFKKGI-LGGKITIET-------   72 (96)
T ss_pred             CcCCCEEEEEEEEEEeecccCceeEEEEeCCEEEEEEcccCCCceEEEEEhhheEEEEEEccc-cccEEEEEE-------
Confidence            45788899888888774 223349999999888888765 66788899999999999998654 446788888       


Q ss_pred             CCCCCCCCCCceEEEEeeecchHHHHHHH
Q 021238          249 GVPPLGSPDGRVRYKFASFWNRNHALRQL  277 (315)
Q Consensus       249 ~~~~~~~~~~~~~~~F~sf~~rd~~~~~l  277 (315)
                               +..++.|.++ +.+++-..+
T Consensus        73 ---------~~~~~~i~~i-~k~~~~~~~   91 (96)
T PF14470_consen   73 ---------NGEKIKIDNI-QKGDVKEFY   91 (96)
T ss_pred             ---------CCEEEEEEEc-CHHHHHHHH
Confidence                     3479999988 565554433

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.39  E-value=0.0065  Score=62.11  Aligned_cols=93  Identities=17%  Similarity=0.243  Sum_probs=69.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C------CEEEEeeccc-CCCCCeecc-eEEEEe--cCCCcEEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-G------SEKRFSSMVP-GSRYPMWGE-EFNFSV--DELPVQIIVTIY   81 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~------~~~~rT~vi~-~tlnP~w~e-~f~f~v--~~~~~~L~~~V~   81 (315)
                      .+.+.|+||++.-|.+++    ...||.|.+ +      ...+||+++. ++.||+|+| .|.|.-  -+.-..|+|.||
T Consensus       702 A~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            678899999999998775    448999987 2      2345888887 679999995 488863  233567999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      +..    ..|||+-.+|++.+..+ -+.+.|..
T Consensus       778 eEg----gK~ig~RIlpvd~l~~G-Yrhv~LRs  805 (1189)
T KOG1265|consen  778 EEG----GKFIGQRILPVDGLNAG-YRHVCLRS  805 (1189)
T ss_pred             ccC----CceeeeeccchhcccCc-ceeEEecC
Confidence            864    46999999999988654 33444543

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.30  E-value=0.045  Score=46.53  Aligned_cols=86  Identities=21%  Similarity=0.233  Sum_probs=59.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWD   84 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d   84 (315)
                      .+.|+|+++.+|...  ....+-||.+.+  +...    ..|+.+.-+..+.|||.+.|++.    +....|.|.||+..
T Consensus         9 ~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           9 KFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            578999999999752  234566777655  4332    25555554567999999999764    24678999999975


Q ss_pred             CCC----------------CCceeEEEEEEcccC
Q 021238           85 IIW----------------KSTVLGSVIVTVESE  102 (315)
Q Consensus        85 ~~~----------------~dd~iG~~~i~l~~l  102 (315)
                      ...                .+..||.+.++|-+-
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~  120 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY  120 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEcc
Confidence            322                246889998888764

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.29  E-value=0.049  Score=45.54  Aligned_cols=85  Identities=14%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             eEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEEE----EeecccCCCCCeecceEEEEec----CCCcEEEEEEEec
Q 021238           14 YLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDW   83 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~~----rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~   83 (315)
                      ..++|+|+++.++.-.+   .+|-||.+.+  +....    .|..+.. .++.|||...|++.    +....|.|.||+.
T Consensus         8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVND---IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCCC---cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            35789999999987543   4688888866  43322    4443433 67999999999874    2467899999997


Q ss_pred             CCCC----CCceeEEEEEEcccC
Q 021238           84 DIIW----KSTVLGSVIVTVESE  102 (315)
Q Consensus        84 d~~~----~dd~iG~~~i~l~~l  102 (315)
                      ....    ....+|.+.++|-+-
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~  106 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDY  106 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECC
Confidence            6421    235799999998774

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=95.99  E-value=0.0085  Score=56.55  Aligned_cols=114  Identities=11%  Similarity=0.144  Sum_probs=79.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CC---------cE
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LP---------VQ   75 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~---------~~   75 (315)
                      .-.|.+.|+++.++.-....-..|-|+++...     ..+.+|.++++|..|.|+|.|.+.+..   ..         ..
T Consensus       366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g  445 (523)
T KOG3837|consen  366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG  445 (523)
T ss_pred             hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence            34566777888777643222235788888762     334589999999999999999999864   11         22


Q ss_pred             EEEEEEecCCC-CCCceeEEEEEEcccCCCc--ccEEEEccC----CCceEEEEEEee
Q 021238           76 IIVTIYDWDII-WKSTVLGSVIVTVESEGQT--GAVWYTLDS----PSGQVCLHIKTI  126 (315)
Q Consensus        76 L~~~V~d~d~~-~~dd~iG~~~i~l~~l~~~--~~~w~~L~~----~~G~i~~~l~~~  126 (315)
                      ++|++|+...+ .+|.++|.+.+.|..+...  ....++|..    -.|++.+++.+.
T Consensus       446 ~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR  503 (523)
T KOG3837|consen  446 KKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIR  503 (523)
T ss_pred             eeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEe
Confidence            89999998754 4588999999999887433  344566642    247777777654

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.89  E-value=0.071  Score=44.30  Aligned_cols=87  Identities=20%  Similarity=0.226  Sum_probs=59.4

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWD   84 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d   84 (315)
                      .++|++....++...+ ....+-||.+.+  +...    ..|.......++.|||...|++.    +....|.|.||+.+
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            5677888877776521 234566777655  3322    24433333468999999999863    24678999999987


Q ss_pred             CCC--CCceeEEEEEEcccC
Q 021238           85 IIW--KSTVLGSVIVTVESE  102 (315)
Q Consensus        85 ~~~--~dd~iG~~~i~l~~l  102 (315)
                      ..+  .+..||.+.++|-+-
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~  107 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDY  107 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcc
Confidence            554  468999999999774

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.75  E-value=0.058  Score=45.17  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=52.4

Q ss_pred             CCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238           33 GTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (315)
Q Consensus        33 g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l  102 (315)
                      ..+|-||.+.+  +...    .+|..+.-+..+.|||...|.+.    +....|.|.|||.+..+....+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            45778888766  3332    25655555667899999999874    24678999999988666678999999999775

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.51  E-value=0.078  Score=44.90  Aligned_cols=90  Identities=14%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEEE----Eeeccc--C--CCCCeecceEEEEec----CCCcEEEE
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEKR----FSSMVP--G--SRYPMWGEEFNFSVD----ELPVQIIV   78 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~~----rT~vi~--~--tlnP~w~e~f~f~v~----~~~~~L~~   78 (315)
                      ...+.|+|.++.+++........|-|+.+.+  +.+..    .|+...  +  ...+.|||...|++.    +....|.|
T Consensus         7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i   86 (171)
T cd04012           7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL   86 (171)
T ss_pred             cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence            4567899999999988765556888888866  43332    443221  1  235789999998874    24678999


Q ss_pred             EEEecCCCC---------CCceeEEEEEEcccC
Q 021238           79 TIYDWDIIW---------KSTVLGSVIVTVESE  102 (315)
Q Consensus        79 ~V~d~d~~~---------~dd~iG~~~i~l~~l  102 (315)
                      .+|+....+         .+..||.+.++|-+.
T Consensus        87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            999976543         357999999998774

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=95.42  E-value=0.27  Score=40.85  Aligned_cols=93  Identities=18%  Similarity=0.189  Sum_probs=69.5

Q ss_pred             CCceeEEEEEEEEeecCCCCCC--CCCCceEEEEEE--CCEEEEeecccCCCCCeecceEEEEecCC-------------
Q 021238           10 TNSAYLIKLELLAAKNLIGANL--NGTSDPYAIITC--GSEKRFSSMVPGSRYPMWGEEFNFSVDEL-------------   72 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l--~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-------------   72 (315)
                      .+....|.+.|..++-...---  -+..++...+.+  .++.++|+.+..+.+|.|+|.|.|++...             
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS   84 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence            3456779999999875543211  155566666555  78899999999999999999999998532             


Q ss_pred             -CcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238           73 -PVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (315)
Q Consensus        73 -~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l  102 (315)
                       .+++.+.|.--|..+...++|+-.+.-..+
T Consensus        85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~v  115 (156)
T PF15627_consen   85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKV  115 (156)
T ss_pred             CCCceEEEEEEecCCCceEeeeeceehHHHH
Confidence             245888888877776668999988887775

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=95.41  E-value=0.26  Score=37.08  Aligned_cols=85  Identities=13%  Similarity=0.260  Sum_probs=60.8

Q ss_pred             CCCceEEEEEECCEEE-EeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccCCCcccEEEE
Q 021238           33 GTSDPYAIITCGSEKR-FSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT  111 (315)
Q Consensus        33 g~sDPyv~v~l~~~~~-rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~  111 (315)
                      |.++-.+++++++... +|.-.. ..+..|++.|.+++.. ...|++.||=.|.   ..+.|-..+-|.+..  ...-.+
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~--~~~~~~   79 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER--HEVQLD   79 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc--ccceec
Confidence            3367788999987544 664433 3578999999999976 6789999997664   246777888888742  244566


Q ss_pred             ccCCCceEEEEEEe
Q 021238          112 LDSPSGQVCLHIKT  125 (315)
Q Consensus       112 L~~~~G~i~~~l~~  125 (315)
                      |.| .|.+...+++
T Consensus        80 lep-qg~l~~ev~f   92 (98)
T cd08687          80 MEP-QLCLVAELTF   92 (98)
T ss_pred             ccc-ccEEEEEEEe
Confidence            766 6777777765

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.29  E-value=0.37  Score=45.32  Aligned_cols=110  Identities=19%  Similarity=0.263  Sum_probs=82.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC--------CCcEEEEEEEecC-CC
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE--------LPVQIIVTIYDWD-II   86 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~--------~~~~L~~~V~d~d-~~   86 (315)
                      +.|.|++|++.+...   .-.-.+...++.....|..+..+-.|.|+....-+++.        ...+|++++|..| ..
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            578999999998652   34456667889999999999999999999988877642        3567999999998 55


Q ss_pred             CCCceeEEEEEEcccC---C----CcccEEEEccCC-------CceEEEEEEeecC
Q 021238           87 WKSTVLGSVIVTVESE---G----QTGAVWYTLDSP-------SGQVCLHIKTIKL  128 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~----~~~~~w~~L~~~-------~G~i~~~l~~~~~  128 (315)
                      +..+.||.+.++|...   .    .....||+|..-       +-++.+.+.+...
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            6778999999999886   2    234579999642       2345555555443

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=95.09  E-value=0.17  Score=47.07  Aligned_cols=101  Identities=24%  Similarity=0.283  Sum_probs=78.6

Q ss_pred             cCCcccceeecceeeeeeecc--cceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCC
Q 021238          170 NLLPDEFVELSYSCVIERSFL--YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGG  247 (315)
Q Consensus       170 ~lp~~E~l~~~~~c~l~~~~~--~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~  247 (315)
                      .+-++|.+.+.++-.|.-+-.  --|.+++|.-.+.|++.... .-.+.|||-+|.+|....+ ++++|+.|.|....| 
T Consensus       150 ~lLp~E~v~~~~~gVwnls~dqGnLGtfivTNvRiVW~A~~ne-~fNVSiPylqi~~i~ir~S-KfG~aLVieT~~~sG-  226 (339)
T PF07289_consen  150 KLLPQEQVYSRVNGVWNLSSDQGNLGTFIVTNVRIVWFADMNE-SFNVSIPYLQIKSIRIRDS-KFGPALVIETSESSG-  226 (339)
T ss_pred             eeCCccEEeeccCCEEEcccCCCceeEEEEeeeEEEEEccCCc-cccccchHhhheeeeeecc-ccceEEEEEEeccCC-
Confidence            556788999999988876221  11999999999999998754 7789999999999987766 789999999976433 


Q ss_pred             CCCCCCCCCCCceEEEEeeecc---h-HHHHHHHHHHHHhhhh
Q 021238          248 HGVPPLGSPDGRVRYKFASFWN---R-NHALRQLQRTAKNYHT  286 (315)
Q Consensus       248 ~~~~~~~~~~~~~~~~F~sf~~---r-d~~~~~l~~~~~~~~~  286 (315)
                                   .|...--++   | ++.|+-|..||+.+.+
T Consensus       227 -------------gYVLGFRvDP~ErL~~l~KEi~sLh~vy~~  256 (339)
T PF07289_consen  227 -------------GYVLGFRVDPEERLQELFKEIQSLHKVYSA  256 (339)
T ss_pred             -------------cEEEEEEcCHHHHHHHHHHHHHHHHHHHHh
Confidence                         566655555   2 6789999999986643

It consists of eukaryotic proteins of around 375 residues in length.

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=94.64  E-value=0.097  Score=47.96  Aligned_cols=112  Identities=13%  Similarity=0.136  Sum_probs=73.4

Q ss_pred             CceeEEEEEEEEeecCCCCCC--CCCCceEEEEEECCE-EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238           11 NSAYLIKLELLAAKNLIGANL--NGTSDPYAIITCGSE-KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~~~-~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (315)
                      ...|.|.+.++.+++|+-..-  +-.-+-||++..+.+ +.||.+.....-=.|.|+|..++.. ...+.+-||.|+.--
T Consensus        48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~pq~  126 (442)
T KOG1452|consen   48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPPQR  126 (442)
T ss_pred             cccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCchh
Confidence            457889999999999985432  334688999988654 3477766666677889999999876 567888899998655


Q ss_pred             CCceeEEEEEEcccC-CCcccEEEEc--cCCCceEEEEEE
Q 021238           88 KSTVLGSVIVTVESE-GQTGAVWYTL--DSPSGQVCLHIK  124 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l-~~~~~~w~~L--~~~~G~i~~~l~  124 (315)
                      .+.+.-..-+.+..+ ....+..+.|  ++ .|++-+++.
T Consensus       127 RHKLC~~g~l~~~~v~rqspd~~~Al~leP-rgq~~~r~~  165 (442)
T KOG1452|consen  127 RHKLCHLGLLEAFVVDRQSPDRVVALYLEP-RGQPPLRLP  165 (442)
T ss_pred             hccccccchhhhhhhhhcCCcceeeeeccc-CCCCceecc
Confidence            554432223333332 2333433433  34 577666665

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.59  E-value=0.39  Score=40.98  Aligned_cols=87  Identities=15%  Similarity=0.136  Sum_probs=53.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE---EEeecccCCCCCeecceEEEEec--C--CCcEEEEEEEecCC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK---RFSSMVPGSRYPMWGEEFNFSVD--E--LPVQIIVTIYDWDI   85 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~---~rT~vi~~tlnP~w~e~f~f~v~--~--~~~~L~~~V~d~d~   85 (315)
                      .++|+|.++.++ ..+......-||.+.+  +...   .+|....-+.+|.|||...|++.  +  ....|.|.||+...
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            467788777633 2222222334555544  3322   25666666678999999888874  2  46789999999742


Q ss_pred             CC----------------CCceeEEEEEEcccC
Q 021238           86 IW----------------KSTVLGSVIVTVESE  102 (315)
Q Consensus        86 ~~----------------~dd~iG~~~i~l~~l  102 (315)
                      ..                .+..||.+.+.|-+-
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~  122 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDH  122 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcC
Confidence            21                145677777776553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.85  E-value=0.38  Score=39.26  Aligned_cols=54  Identities=30%  Similarity=0.347  Sum_probs=40.3

Q ss_pred             EeecccCC-CCCeecceEEEEec----CCCcEEEEEEEecCCCCCC----ceeEEEEEEcccC
Q 021238           49 FSSMVPGS-RYPMWGEEFNFSVD----ELPVQIIVTIYDWDIIWKS----TVLGSVIVTVESE  102 (315)
Q Consensus        49 rT~vi~~t-lnP~w~e~f~f~v~----~~~~~L~~~V~d~d~~~~d----d~iG~~~i~l~~l  102 (315)
                      .|....-+ .++.|+|...|.+.    +....|.|.||..+.....    ..||.+.++|-+-
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555555 79999999999873    3477899999998766555    6999999998775

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes

Probab=93.52  E-value=0.51  Score=35.49  Aligned_cols=48  Identities=21%  Similarity=0.432  Sum_probs=34.1

Q ss_pred             eeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEE
Q 021238          193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIIL  241 (315)
Q Consensus       193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~  241 (315)
                      |++|+|.+.++|--........+.||+.+|..++.....+ ..+..|+.
T Consensus        38 G~l~LTsHRliw~d~~~~~~~s~~l~L~~i~~~e~~~gf~-~sSpKI~l   85 (89)
T PF11605_consen   38 GRLYLTSHRLIWVDDSDPSKHSIALPLSLISHIEYSAGFL-KSSPKIIL   85 (89)
T ss_dssp             EEEEEESSEEEEEESSGHCHH-EEEEGGGEEEEEEE-STT-SSS-EEEE
T ss_pred             CEEEEEeeEEEEEcCCCCceeEEEEEchHeEEEEEEcccc-CCCCeEEE
Confidence            9999999999997554433457999999999996665543 44555554

The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.

>PF06115 DUF956: Domain of unknown function (DUF956); InterPro: IPR010360 This is a family of bacterial sequences with undetermined function

Probab=92.38  E-value=0.75  Score=36.16  Aligned_cols=69  Identities=16%  Similarity=0.164  Sum_probs=51.9

Q ss_pred             eeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc--ccccCcEEEEEecCCCCCCCCCCCCCCCceEEE
Q 021238          186 ERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFINPAITIILRMGAGGHGVPPLGSPDGRVRYK  263 (315)
Q Consensus       186 ~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~--~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~  263 (315)
                      ...+.-+|++.+-.+-+=||.+... +--+-|||.+|..|.-.-.  -..+|-..|.|++               +.+|.
T Consensus        18 ~~g~~~yGkimiGDkaFEFyn~~n~-~dyIQIPW~eI~~V~a~V~fkgk~I~RF~I~Tk~---------------~G~f~   81 (118)
T PF06115_consen   18 YLGLGKYGKIMIGDKAFEFYNDRNV-EDYIQIPWEEIDYVIASVSFKGKWIPRFAIFTKK---------------NGKFT   81 (118)
T ss_pred             EecccccCeEEEcccceEeecCCCh-hhcEEeChhheeEEEEEEEECCCEEeeEEEEECC---------------CCEEE
Confidence            3345567999999888888876543 5668999999999977654  3456778899975               24899


Q ss_pred             Eeeecch
Q 021238          264 FASFWNR  270 (315)
Q Consensus       264 F~sf~~r  270 (315)
                      |+|--+.
T Consensus        82 Fsskd~k   88 (118)
T PF06115_consen   82 FSSKDSK   88 (118)
T ss_pred             EEECChH
Confidence            9986543

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=91.96  E-value=1.3  Score=33.87  Aligned_cols=70  Identities=19%  Similarity=0.215  Sum_probs=45.8

Q ss_pred             EEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEecCC
Q 021238           16 IKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYDWDI   85 (315)
Q Consensus        16 L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d~d~   85 (315)
                      +.+.+....++........+|-||.+.+  +...    ..|..+.-...+.|||...|++.    +....|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            4566666666655433333588888866  4332    25555544556999999988764    246789999999653

Outlier of C2 family.

>cd01201 Neurobeachin Neurobeachin Pleckstrin homology-like domain

Probab=91.88  E-value=0.37  Score=37.42  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=60.1

Q ss_pred             ceeecceeeeee-ecccceeEEeecceeeeeecC----C-Cce---------eEEEEecCceeEEEeeccccccCcEEEE
Q 021238          176 FVELSYSCVIER-SFLYHGRMYVSAWHICFHSNA----F-SRQ---------MKVIIPIGDIDEIQRSQHAFINPAITII  240 (315)
Q Consensus       176 ~l~~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~----~-g~~---------~~~~i~~~~i~~i~k~~~~~~~~~i~i~  240 (315)
                      .++-+..|.+.. -.-+.|++-||..++.|.-+.    + +..         ....+++++|.+|-+..-.+=.-|++|.
T Consensus         2 ~ivls~~~~mVtPl~vvpG~l~ITt~~lyF~~d~~~~~~~~~~~~vl~~~~~~~~~w~ls~Ir~v~~RRylLr~~alEiF   81 (108)
T cd01201           2 PVLLSTPASLIAPGVVVKGTLSITTTEIFFEVDERDSQFKKIDDEVLSYCEELHGKWPFSEIRAIFSRRYLLQNTALELF   81 (108)
T ss_pred             CeEEEeeeeEEEEEEEeccEEEEecCEEEEEECCccccccccCccceeccccccceeeHHHHHHHHHHhhhcccceEEEE
Confidence            345567788877 444569999999999999642    1 111         1237899999999887764434499999


Q ss_pred             EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHH
Q 021238          241 LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQR  279 (315)
Q Consensus       241 ~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~  279 (315)
                      ..+|                .-.|-+|-+++...+++..
T Consensus        82 ~~d~----------------~~~f~~F~~~~~~k~vv~~  104 (108)
T cd01201          82 LASR----------------TSIFFAFPDQNAVKKVVYA  104 (108)
T ss_pred             EeCC----------------ceEEEEeCcHHHHHHHHhh
Confidence            9643                3355667777777666543

Neurobeachin Pleckstrin homology-like domain. This domain is found in the large multi-domain eukaryotic protein Nerubeachin, N-terminal to the BEACH domain. This PH-like domain interacts with the BEACH domain in the same manner used by other PH-like domains to bind peptides.

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=91.87  E-value=5.7  Score=31.97  Aligned_cols=112  Identities=18%  Similarity=0.274  Sum_probs=69.2

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEE---EEeeccc-CCCCCeecceEEEEec----C-----CCcEEEE
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK---RFSSMVP-GSRYPMWGEEFNFSVD----E-----LPVQIIV   78 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~---~rT~vi~-~tlnP~w~e~f~f~v~----~-----~~~~L~~   78 (315)
                      ....+.|+|.+..+++.    ....-||+...+...   ..|.... .+..-.|+++|.+.+.    .     ....+.|
T Consensus         5 ~kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    5 VKFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            45678899999998876    223345555554432   3443333 4556899999988753    1     1335889


Q ss_pred             EEEecCCCCCCceeEEEEEEcccCCC----cccEEEEccCC-C--ceEEEEEEeec
Q 021238           79 TIYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSP-S--GQVCLHIKTIK  127 (315)
Q Consensus        79 ~V~d~d~~~~dd~iG~~~i~l~~l~~----~~~~w~~L~~~-~--G~i~~~l~~~~  127 (315)
                      .|+.....++...+|.+.++|++...    ....-++|... .  ..+.+.|....
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~  136 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSE  136 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEE
Confidence            99987533333699999999999632    33445666543 3  33455555443

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity

Probab=90.68  E-value=1.8  Score=31.73  Aligned_cols=63  Identities=19%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             eeEEeecce--eeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEe
Q 021238          193 GRMYVSAWH--ICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFA  265 (315)
Q Consensus       193 G~lyis~~~--~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~  265 (315)
                      |.||+++..  +-|-..-.+....+.||+.+|...+-+....----+.|+.+.+.          +.....|.|+
T Consensus        14 G~L~l~~d~~~~~W~~~~~~~~~~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~----------~~~~~~f~F~   78 (79)
T PF08567_consen   14 GTLTLTEDRKPLEWTPKASDGPSTVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDS----------SEESKTFVFT   78 (79)
T ss_dssp             EEEEEETTCSSEEEEECCSSSSSEEEEETTTEEEEEE--TTSSTEEEEEEETTSC-------------CCCEEE-
T ss_pred             cEEEEecCCceEEEeecCCCCCceEEEEHHHhhhhccCCCCCcceEEEEEEecCC----------cccceEEEEe
Confidence            999999999  99988655544479999999999877654321115778876531          1245678886

The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=88.65  E-value=1.8  Score=36.91  Aligned_cols=54  Identities=15%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             EEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCCC---CceeEEEEEEccc
Q 021238           48 RFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIWK---STVLGSVIVTVES  101 (315)
Q Consensus        48 ~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~~---dd~iG~~~i~l~~  101 (315)
                      ..|.+...+.+|.|+|+|.+.+..   ...-|.|++++...-.+   ...+|-+.+||-+
T Consensus        61 ~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   61 YYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            367777788999999999999863   35679999999653322   2699999999987

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=88.62  E-value=6  Score=34.20  Aligned_cols=55  Identities=13%  Similarity=0.079  Sum_probs=40.7

Q ss_pred             EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCC----CCCceeEEEEEEccc
Q 021238           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVES  101 (315)
Q Consensus        47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~----~~dd~iG~~~i~l~~  101 (315)
                      ..+|-+...+.+|.|+|++.+.+..   .+.-|.|++++....    .....+|-+.+||-+
T Consensus        54 e~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~~  115 (196)
T cd08694          54 EYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLMQ  115 (196)
T ss_pred             eEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeeec
Confidence            4578888888999999999999863   356799999885421    123568888888753

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=88.11  E-value=5.4  Score=34.32  Aligned_cols=55  Identities=11%  Similarity=0.120  Sum_probs=40.7

Q ss_pred             EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCCC-C-CceeEEEEEEccc
Q 021238           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDIIW-K-STVLGSVIVTVES  101 (315)
Q Consensus        47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~~-~-dd~iG~~~i~l~~  101 (315)
                      ..+|-+...+.+|.|+|++.+.+..   ...-|.|++++...-. + ...+|-+.+||-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            4588888889999999999999863   3566999888754221 1 2568888888754

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>COG4687 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.96  E-value=1.2  Score=34.55  Aligned_cols=63  Identities=17%  Similarity=0.180  Sum_probs=47.2

Q ss_pred             cceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecccc-ccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecc
Q 021238          191 YHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAF-INPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWN  269 (315)
Q Consensus       191 ~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~-~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~  269 (315)
                      -.|++.+-..-+-||-+.. .+.-+.|||.+|..|--..+.. +++...|.|.+               +.+|.|+|--+
T Consensus        23 ~~GkiliGDkgfEFYn~~n-v~k~iqipWs~i~~v~vsvs~KK~~~~f~i~td~---------------~gk~~FaSkds   86 (122)
T COG4687          23 EYGKILIGDKGFEFYNDRN-VEKFIQIPWSEINEVDVSVSLKKWGRQFSIFTDT---------------QGKVRFASKDS   86 (122)
T ss_pred             hcCeEEEcccceeecCCCC-hhheeEecHHHhheeheeehhhhhcceEEEEEcC---------------CceEEEEeCCc
Confidence            3599999877777765553 3777999999999876665443 78888888863               35999999654

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=86.12  E-value=9.6  Score=32.05  Aligned_cols=68  Identities=19%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             CCceEEEEEECCEEE-Eeeccc--CCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCceeEEEEEEcccC
Q 021238           34 TSDPYAIITCGSEKR-FSSMVP--GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVESE  102 (315)
Q Consensus        34 ~sDPyv~v~l~~~~~-rT~vi~--~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~~l  102 (315)
                      +..-|+++.++++.. +|+...  ....=.|++.|.+.+..-...|.++||.... ..+..|+++.+|+-..
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~  106 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGS  106 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCC
Confidence            346788888876544 554443  3344556899999998778899999999876 5788999999998664

>PF07289 DUF1448: Protein of unknown function (DUF1448); InterPro: IPR006606 This entry represents the Bardet-Biedl syndrome 5 protein (BBL5)

Probab=85.55  E-value=8.1  Score=36.19  Aligned_cols=92  Identities=21%  Similarity=0.341  Sum_probs=67.8

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc-ccc-c--CcEEEEEecCCCCCCCCCCCCCCCceEEEEeee
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH-AFI-N--PAITIILRMGAGGHGVPPLGSPDGRVRYKFASF  267 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~-~~~-~--~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf  267 (315)
                      .|+|++|.-.+.|+|...- ...+.|=|.-|..|+.... +++ +  .|+.|.++-+            +.+-.|.|+..
T Consensus        42 ~G~l~vTNLR~iW~s~~~~-r~NlSIG~~~i~~i~~~~~~sklrg~teaL~i~~k~~------------~~rfEFiFt~~  108 (339)
T PF07289_consen   42 RGRLVVTNLRLIWHSLKRP-RINLSIGYNCITNISTKTVNSKLRGNTEALYILAKFN------------NTRFEFIFTNL  108 (339)
T ss_pred             eeEEEEEeeeeEEeccCCC-ceeEEeeceeEEEEEEEEeeccccCceeEEEEeeecC------------CceEEEEeccC
Confidence            3999999999999998643 5889999999999887642 222 2  3889988643            46677778866


Q ss_pred             cchH---HHHHHHHHHHHhhhh-hhhhhhhhcc
Q 021238          268 WNRN---HALRQLQRTAKNYHT-MLEAEKKVRS  296 (315)
Q Consensus       268 ~~rd---~~~~~l~~~~~~~~~-~~~~~~~~~~  296 (315)
                      ....   ..|..+..+|++|.. .+-.|-+.|+
T Consensus       109 ~~~~~~~~lf~~v~~v~raY~ts~lYRelklR~  141 (339)
T PF07289_consen  109 SPNSPRQRLFTSVQAVYRAYETSRLYRELKLRG  141 (339)
T ss_pred             CCCCccchHHHHHHHHHHHHHHHhHhhhhhhhe
Confidence            4333   569999999999864 4566666654

It consists of eukaryotic proteins of around 375 residues in length.

>PF11696 DUF3292: Protein of unknown function (DUF3292); InterPro: IPR021709 This eukaryotic family of proteins has no known function

Probab=82.70  E-value=3.3  Score=41.95  Aligned_cols=82  Identities=13%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             ceeeeeeecccceeEEee----cceeeeeecC------------CCceeEEEEecCceeEEEeecccc------------
Q 021238          181 YSCVIERSFLYHGRMYVS----AWHICFHSNA------------FSRQMKVIIPIGDIDEIQRSQHAF------------  232 (315)
Q Consensus       181 ~~c~l~~~~~~~G~lyis----~~~~cF~s~~------------~g~~~~~~i~~~~i~~i~k~~~~~------------  232 (315)
                      |.|-|..+   .|.+||+    .=.++|.+.-            -....-+.||+.||..++|.....            
T Consensus       521 F~AR~~Gk---kG~v~I~ssa~~P~l~Ftt~~~~~~~d~~~~~~~~~~~~wsv~V~dI~elkKvgGlGWK~KLvVGWa~g  597 (642)
T PF11696_consen  521 FPARYKGK---KGHVYIDSSATPPVLSFTTDKTSSLGDLRLEEREKGHPLWSVPVADIAELKKVGGLGWKGKLVVGWALG  597 (642)
T ss_pred             eeeecCCc---cceEEEecCCCCcEEEEeccCccccccccccccccCceeeEEEhHHhhhhhhcccccceeeEEEeeecC
Confidence            55555543   2889998    4467887751            122455999999999999976421            


Q ss_pred             ---ccCcEEEE-EecCCCCCCCCCCCCCCCceEEEEeeecchHHHHHHHHHH
Q 021238          233 ---INPAITII-LRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALRQLQRT  280 (315)
Q Consensus       233 ---~~~~i~i~-~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd~~~~~l~~~  280 (315)
                         +..++.|+ ++               ....|.++-...||+.|+.|-.+
T Consensus       598 ~kEv~DGL~I~g~~---------------~g~~y~lTA~~~RDeLFNRLiAm  634 (642)
T PF11696_consen  598 EKEVVDGLVIVGDE---------------PGQEYHLTAMPRRDELFNRLIAM  634 (642)
T ss_pred             CcccccceEEeccC---------------CCCEEEEEecchHHHHHHHHHhc
Confidence               12245555 44               33799999999999999988764

>smart00683 DM16 Repeats in sea squirt COS41

Probab=82.51  E-value=6.1  Score=26.81  Aligned_cols=34  Identities=15%  Similarity=0.386  Sum_probs=30.2

Q ss_pred             eeEEeecceeeeeecCCCceeEEEEecCceeEEEe
Q 021238          193 GRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQR  227 (315)
Q Consensus       193 G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k  227 (315)
                      |.+++|.-.+.|+|... ....+.|||..|.+|..
T Consensus        21 G~l~VTNlRiiW~s~~~-~~~NlSIgy~~i~~i~~   54 (55)
T smart00683       21 GVFFVTNLRLVWHSDTN-PRFNISVGYLQITNVRV   54 (55)
T ss_pred             eEEEEEeeEEEEEeCCC-CceEEEEcceeEEEEEe
Confidence            99999999999999875 37889999999999853

4, worm R01H10.6, fly CG1126 etc.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	315
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		5e-08
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		9e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		3e-05
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-05
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		4e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		2e-04
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		2e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-04
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		7e-04

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 56/125 (44%), Gaps = 17/125 (13%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLD------SPSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD      + SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138
Query: 119 VCLHI 123
           + LHI
Sbjct: 139 IRLHI 143

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 181 AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRR 240
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 241 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 278

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQ 75
           AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F + E     +
Sbjct: 40  AKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRR 99
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV--WYTL 112
           + V I+DWD+  ++  +GS+   + SE Q   V  W+ L
Sbjct: 100 LSVEIWDWDLTSRNDFMGSLSFGI-SELQKAGVDGWFKL 137

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVES--EGQ 104
            + VT++D D       LG V + + S  +GQ
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPG-SRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++  G    P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71
Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVE 100
           ++   I+D D+  +   +G   + +E
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLE 97

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 26  AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 85
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++  +GS+   V E      + WY L
Sbjct: 86  LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 123

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 25  AKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 84
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++  +GS+   V E      + WY L
Sbjct: 85  LSVEIWDWDRTTRNDFMGSLSFGVSELMKMPASGWYKL 122

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 23  AKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQ 75
           AKNLI  + NG SDPY  +          K+ +  +  +  P W E F F +   +   +
Sbjct: 27  AKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRR 86
Query: 76  IIVTIYDWDIIWKSTVLGSVIVTV-ESEGQTGAVWYTL 112
           + V I+DWD   ++   GS+   V E      + WY L
Sbjct: 87  LSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKL 124

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 20  LLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRY-----PMWGEEFNFSV--DEL 72
           +L AKNL   ++ G SDPY  I      +       +       P + E F+F V  +++
Sbjct: 156 ILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI 215
Query: 73  -PVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVW 109
             VQ++VT+ D+D I K+  +G V V   S G     W
Sbjct: 216 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 253

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	1e-27
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	4e-27
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-22
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	6e-19
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	2e-18
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	4e-18
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-17
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	3e-17
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-16
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-16
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	3e-16
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-15
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-15
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-14
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	9e-11
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	9e-14
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-13
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	6e-10
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	2e-13
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-13
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-13
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	4e-13
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	5e-13
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	5e-13
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	8e-13
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	1e-12
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	1e-12
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	3e-12
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	4e-12
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	4e-11
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	2e-10
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	6e-10
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	9e-10
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-09
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-09
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-09
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	2e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	7e-09
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-08
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	2e-07
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	9e-06
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  103 bits (259), Expect = 1e-27
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 7/117 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELP 73
            +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E  
Sbjct: 11  TLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGT 70

Query: 74  VQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
            ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 71  TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  102 bits (256), Expect = 4e-27
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           I + ++ A+ L   +  G+SDPY  +  G  K+ +  + G+  P+W E F+F       +
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 76  IIVTIYDWDIIWKSTV-----------LGSVIVTVESEGQTGAVWYTLDS------PSGQ 118
           I V + D D   KS V           LG  I+ V +      VWY LD        SG 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 119 VCLHIK 124
           + LHI 
Sbjct: 139 IRLHIS 144

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 89.3 bits (222), Expect = 3e-22
 Identities = 26/116 (22%), Positives = 56/116 (48%), Gaps = 6/116 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 14  ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 73

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIK 124
            + VT++D D       LG V + + S        Y L +        G + L + 
Sbjct: 74  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMD 129

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 81.5 bits (201), Expect = 6e-19
 Identities = 13/116 (11%), Positives = 38/116 (32%), Gaps = 6/116 (5%)

Query: 8   PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNF 67
                   +++ +++AK            PY  +T   + + +     +  P W +    
Sbjct: 30  GSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV 89

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV-----ESEGQTGAVWYTLDSPSGQ 118
            V  +  ++   ++    +    +LG+  + +      +  +   V  TL     +
Sbjct: 90  IVTPVS-KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDK 144

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 79.1 bits (195), Expect = 2e-18
 Identities = 25/140 (17%), Positives = 46/140 (32%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES----EGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E       +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 77.8 bits (192), Expect = 4e-18
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNLI---GANLNGTSDPYAIITCGSEKRF---SSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +   +       +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D     ++ +T+ D + +     LG+   TV S   G+   V +  +    ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIFN-QVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 76.6 bits (189), Expect = 2e-17
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 17/126 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT--CGSEKRFSSMVPGSRYPMWGEEFNFSVDELP 73
           I+L +L AKNL   +     DP+A I      +   +  V  +  P W + ++  V +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGK-T 65

Query: 74  VQIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGA-VWYTLDSP----------SGQV 119
             I +++++   I K   +  LG V +   +  +     +  LD             GQ+
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQI 125

Query: 120 CLHIKT 125
            + ++T
Sbjct: 126 VVSLQT 131

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 74.4 bits (183), Expect = 1e-16
 Identities = 23/124 (18%), Positives = 53/124 (42%), Gaps = 15/124 (12%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++ + +A N+      G  DP   +    EK+ +  V     P+W E   F +  +P+
Sbjct: 8   MLRVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 75  Q----IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS--------GQVC 120
                + + + D++ I ++ ++G+  V ++     Q+ ++ Y L S            + 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATID 126

Query: 121 LHIK 124
           L I 
Sbjct: 127 LVIG 130

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 75.0 bits (184), Expect = 1e-16
 Identities = 17/127 (13%), Positives = 42/127 (33%), Gaps = 19/127 (14%)

Query: 15  LIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEKRFSSMV-PGSRYPMWGE 63
            +++ +  A  L               +   DPY  ++    +   +     +  P + E
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 64  EFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVES------EGQTGAVWYTLDSPSG 117
           EF  +V +    + + ++    +     + +  +  +          T   W  L+ P G
Sbjct: 90  EFCANVTD-GGHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE-PEG 147

Query: 118 QVCLHIK 124
           +V + I 
Sbjct: 148 KVFVVIT 154

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +   +
Sbjct: 36  VVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 95

Query: 72  LPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 96  KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 141

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 71.7 bits (176), Expect = 2e-15
 Identities = 25/130 (19%), Positives = 48/130 (36%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSM------VPGSRYPMWGEEFNFS 68
           ++++ ++A   L   ++ G SDPY  +T                +  S  P W EE  F 
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAV-----WYTLDSPS---- 116
           V     +++  ++D + + +   LG V V    + +E            + L   S    
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSR 140

Query: 117 --GQVCLHIK 124
             G + L + 
Sbjct: 141 VKGYLRLKMT 150

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 71.1 bits (174), Expect = 4e-15
 Identities = 26/130 (20%), Positives = 49/130 (37%), Gaps = 20/130 (15%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNFS 68
           +++++++A   L   ++ G SDPY  +T             +  +  S  P W EE  F 
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68

Query: 69  VDELPVQIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS----------- 114
           V     +I+  ++D + + +   LG V V    + +E       YT              
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSR 128

Query: 115 PSGQVCLHIK 124
             G + L + 
Sbjct: 129 VKGYLRLKMT 138

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 20/118 (16%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII--------------TCGSEKRFSSMVPGSRYPMWGEE 64
            +L A+NL+  + NG SDP+  +                   KR +  V  S  P W + 
Sbjct: 23  HILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQT 82

Query: 65  FNF---SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
             +   S+++L  + + VT++D+D    +  LG V++ + S         WY L   +
Sbjct: 83  VIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT 140

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 71.0 bits (174), Expect = 3e-14
 Identities = 34/144 (23%), Positives = 59/144 (40%), Gaps = 13/144 (9%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   F V 
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 70  -DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAV-WY-TLDSPSGQVCL-HIK 124
            + +  V + + + D+D I  + V+G   V  E+    G   W   L +P   V   H  
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWH-- 271

Query: 125 TIKLPVNASRVMNGYAGANARRRA 148
            +      S    G  G + +  +
Sbjct: 272 QLVEEKTLSSFTKGGKGLSEKENS 295

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 60.6 bits (147), Expect = 9e-11
 Identities = 26/115 (22%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           +L A +L   + NG SDPY  I       +K  + +   +  P++ E F FSV   EL  
Sbjct: 26  ILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQ 85

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIK 124
           + +  ++YD+D   +  ++G V++    E         +W  +     +     +
Sbjct: 86  RKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGE 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 66.6 bits (163), Expect = 9e-14
 Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 40  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG 99

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDS 114
           + + + +YD+D   K  ++G   V + +   G     W  L S
Sbjct: 100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 12/129 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPG 55
               +  P       + + +L AKNL   ++ G SDPY  I         +K+ +++   
Sbjct: 140 CFSLRYVPTAG---KLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 196

Query: 56  SRYPMWGEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-T 111
           +  P + E F+F V  +++  VQ++VT+ D+D I K+  +G V V   S G     W   
Sbjct: 197 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 256

Query: 112 LDSPSGQVC 120
           L +P   + 
Sbjct: 257 LANPRRPIA 265

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 27/117 (23%), Positives = 50/117 (42%), Gaps = 8/117 (6%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT---CGSEKRFSSMVPGSRYPMWGEEFNFSV--DELPV 74
           ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL  
Sbjct: 25  IIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAG 84

Query: 75  QII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTIKL 128
           + + + +YD+D   K  ++G   V + +   G     W  L S   +    +  I  
Sbjct: 85  KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICF 141

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV--DELP 73
            ++ A  L   ++ GTSDPY  +       +K  + +   +  P++ E+F F V   EL 
Sbjct: 47  GIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELG 106

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP 115
            + + + +YD+D   K  ++G   V + +   G     W  L S 
Sbjct: 107 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 66.3 bits (162), Expect = 2e-13
 Identities = 20/111 (18%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++   +L   + NG SDP+  +          K  + +   +  P + EEF + +   +
Sbjct: 42  GIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD 101

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
           L    + ++++D+DI   +  +G   + + ++G+    WY  L +   ++ 
Sbjct: 102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 152

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 22/106 (20%), Positives = 44/106 (41%), Gaps = 9/106 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNF---SVDELP 73
           ++ A+ L   + +GTSDP+  I        K  + +   +  P W E F F     +++ 
Sbjct: 32  IMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV 91

Query: 74  VQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            +I+ + + D+D   ++  +G V + +      Q    W  L    
Sbjct: 92  QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPSG 137

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 65.1 bits (159), Expect = 4e-13
 Identities = 33/111 (29%), Positives = 55/111 (49%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            +L AKNL   ++ G SDPY  I         +K+ +++   +  P + E F+F V  ++
Sbjct: 30  VILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ 89

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           +  VQ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 90  IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 64.2 bits (157), Expect = 5e-13
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 9/111 (8%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            ++ A+NL   ++ GTSDPY  +         EK+ +     +  P++ E F F +  ++
Sbjct: 21  NIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEK 80

Query: 72  LP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSGQVC 120
           L    II+T+ D D + ++ V+G + ++ +S       W   +  P   V 
Sbjct: 81  LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVA 131

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 64.7 bits (158), Expect = 5e-13
 Identities = 25/123 (20%), Positives = 56/123 (45%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 26  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 82

Query: 62  GEEFNFSV--DELP-VQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +  + L  + +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 83  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 142

Query: 118 QVC 120
           Q+ 
Sbjct: 143 QIA 145

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 63.9 bits (156), Expect = 8e-13
 Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           ++ AK L   + NG +DPY  +        S K  +  +  +R P+W E   +   + ++
Sbjct: 35  IIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEED 94

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD 113
           +  + + +++ D D    +  +G    +++         + + 
Sbjct: 95  MQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNIC 137

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 23/105 (21%), Positives = 43/105 (40%), Gaps = 12/105 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 24  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 83

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTL 112
              +++ +T++D   + +  S  LG +++ +E+        WY L
Sbjct: 84  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 128

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 12/109 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNF---SVDE 71
           +L AK+L         +PY  I          KR +  V  +  P W + F +      E
Sbjct: 27  ILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE 86

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +++ +T++D   + +  S  LG +++ +E+        WY L +  
Sbjct: 87  FRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKLQTHD 135

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.9 bits (150), Expect = 3e-12
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 10/100 (10%)

Query: 33  GTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL 92
              + Y  +   + K  +  V GS  P W ++F F ++ L + + V +++  +IW  T++
Sbjct: 21  EKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGLTVEVWNKGLIWD-TMV 78

Query: 93  GSVIVTVE----SEGQTGAVWYTLDSPS----GQVCLHIK 124
           G+V + +     S  +    W TLDS +     ++C    
Sbjct: 79  GTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKD 118

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 62.4 bits (152), Expect = 4e-12
 Identities = 29/135 (21%), Positives = 55/135 (40%), Gaps = 15/135 (11%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGS 56
           ++   D Q      + L ++  K LI     GT DPY  I           + +  VP  
Sbjct: 18  LRLSIDAQDRV---LLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDC 73

Query: 57  RYPMWGEEFNFSV--DELPVQIIVTIYDWDIIWK-STVLGSVIV---TVESEGQTGAVWY 110
           R P + E F F V  ++   +++VT+++     + S ++G +     ++ +  +  + WY
Sbjct: 74  RDPAFHEHFFFPVQEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWY 133

Query: 111 TLDSPSGQVCLHIKT 125
            L         H+K 
Sbjct: 134 YLLGEHLGRTKHLKV 148

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 58.9 bits (143), Expect = 4e-11
 Identities = 20/107 (18%), Positives = 39/107 (36%), Gaps = 12/107 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAIIT----CGSEKRFSSMVPGSRYPMWGEEFNFSV--DEL 72
             L A      N +G  D Y   +     GS +  +++     +  W E     +  +EL
Sbjct: 31  TRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 73  PVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPS 116
           P   + +T+   D   + +V G + + ++        A W  L +  
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTSG 134

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 20  LLAAKNLIGANLNGTSDPYAIIT-----CGSEKRF-SSMVPGSRYPMWGEEFNFSV--DE 71
           ++   NL              +        +   F +  +  S   ++ E F  S+    
Sbjct: 49  IIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPA 108

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDS 114
           L  + + V +   D       LG   +    V   G+    WY L S
Sbjct: 109 LHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 56.2 bits (135), Expect = 6e-10
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 10/131 (7%)

Query: 6   GDPQTNSAYLIKLELLAAKNLIGANLNGTSD---PYAIITCGSEKRFSSMVPGSRYPMWG 62
           G P  +      L LL    +  A  +G  +    Y  +   + +  +  V GS  P W 
Sbjct: 1   GSPGISGGGGGILSLLCVG-VKKAKFDGAQEKFNTYVTLKVQNVESTTIAVRGS-QPSWE 58

Query: 63  EEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTV----ESEGQTGAVWYTLDSPSGQ 118
           ++F F ++ L + + V +++  +IW  T++G+V + +    +S  +    W TLDS +  
Sbjct: 59  QDFMFEINRLDLGLTVEVWNKGLIW-DTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIM 117

Query: 119 VCLHIKTIKLP 129
               I   K P
Sbjct: 118 ADSEICGTKDP 128

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 55.4 bits (134), Expect = 9e-10
 Identities = 16/108 (14%), Positives = 37/108 (34%), Gaps = 11/108 (10%)

Query: 20  LLAAKNLIGANL-NGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
           +     L  A+     S+PY             KR +S+   +  P++ E   + +    
Sbjct: 29  VKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESL 88

Query: 72  LPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
           L  + +  +++      ++T LG   + ++S    +       L    
Sbjct: 89  LAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI 136

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 13/111 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV--DE 71
            + A +NLI  + +G SDPY  +        S +R + +   +  P++ + F+FSV   E
Sbjct: 29  VVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 72  LPVQII-VTIYDWDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG 117
           +  + + V + +          +LG V+V + SE   +    WY L   SG
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG 138

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 54.2 bits (131), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 19  ELLAAKNLIGANLNGTSDPYAII-----TCGSEKRFSSMVPGSRYPMWGEEFNFSV---D 70
            ++  K+L+  +     +PY        T  + KR + +   +R P + E   +S    +
Sbjct: 25  MVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 71  ELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS 116
            L  + + +++   + + ++  LG + + ++     +    WY L + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAAT 132

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 12/127 (9%)

Query: 2   VQFKGDPQTNSAYLIKLELLAAKNLIGANL-NGTSDPYAIIT-----CGSEKRFSSMVPG 55
           +Q   + +      +++E++ A++L        T  PY  +          K+ + +   
Sbjct: 21  IQIGMEDKKGQ---LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARK 77

Query: 56  SRYPMWGEEFNFSVDELPVQIIVTIY-DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL 112
           +  P++ +   F        + V ++ D+  +     +G   + +E          WY L
Sbjct: 78  TLDPLYQQSLVFDESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKL 137

Query: 113 DSPSGQV 119
             PS  V
Sbjct: 138 FPPSSLV 144

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 54.3 bits (131), Expect = 2e-09
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 18/116 (15%)

Query: 20  LLAAKNLIGAN-------LNGTSDPYA---IITCGSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ A++L               S+PY    ++      + + +   ++ P++ E + F +
Sbjct: 32  VIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEI 91

Query: 70  --DELPVQII-VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTL---DSPSG 117
              E   + + +T+ D+D   +  V+G V V +      + G  W  L      SG
Sbjct: 92  PFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPSGPSSG 147

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 52.7 bits (127), Expect = 7e-09
 Identities = 20/107 (18%), Positives = 41/107 (38%), Gaps = 11/107 (10%)

Query: 20  LLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV---DEL 72
           +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F      ++
Sbjct: 28  IKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQI 87

Query: 73  PVQII-VTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTLDSP 115
               +  TI  +D   +  ++G V++    +E       +   + S 
Sbjct: 88  QELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 54.1 bits (129), Expect = 2e-08
 Identities = 22/97 (22%), Positives = 39/97 (40%), Gaps = 6/97 (6%)

Query: 35  SDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFS-VDELPVQ-IIVTIYDWDIIWKSTVL 92
           +D Y  +  G ++  + +V  +  P W ++ +F  V       + V ++D D  W   +L
Sbjct: 414 TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLL 473

Query: 93  GSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTIKLP 129
           GS   +  S      V   L+   G+V        LP
Sbjct: 474 GSCDRSPHSGFHE--VTCELN--HGRVKFSYHAKCLP 506

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 8/114 (7%)

Query: 14  YLIKLELLAAKNLI---GANLNGTSDPYAII---TCGSEKRFSSMVPGSRYPMWGEEFNF 67
           +   + +L A  +      ++  T DPY  +   T    ++ +        P+W E F F
Sbjct: 18  HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 77

Query: 68  SVDELPVQII-VTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQVC 120
            +D     ++ +T+ D +       LG+   TV S                   
Sbjct: 78  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEM 130

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 11/72 (15%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 30  NLNGTSDPYAIITCGSEKRFSSMVPGSRYP-MWGEEFNFSVDELPVQ---IIVTIYDWDI 85
            L G +D  A +T   +  +S ++        + E F + V     +   + + I+++  
Sbjct: 32  ELRGRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91

Query: 86  IWKSTVLGSVIV 97
           ++ + ++G+  +
Sbjct: 92  VFSNKLIGTFRM 103

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 43.4 bits (101), Expect = 5e-05
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF----SSMVPGSRYPMWGEEFNF---- 67
           +KL ++ A+ L           Y  +                       WGE F F    
Sbjct: 13  LKLWIIEARELPP-----KKRYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLP 67

Query: 68  SVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE--SEGQTGAVWYTLDSPSGQ 118
           +V  L + +           K+  +G V V V   +       WY +  P+G 
Sbjct: 68  AVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGS 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 94/304 (30%)

Query: 25  NLIGANL---NGTSDPYAIITCGSEKRFSSMVPGS-----------RYPMWGEEFN-FSV 69
           ++I  ++     T D +  + C    + ++++  S            +    +  + F  
Sbjct: 331 SIIAESIRDGLATWDNWKHVNC---DKLTTIIESSLNVLEPAEYRKMF----DRLSVFPP 383

Query: 70  D-ELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-------EGQTGAVWYTLDSPSGQVCL 121
              +P  ++       +IW   +   V+V V         E Q      ++  PS  + L
Sbjct: 384 SAHIPTILLS------LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLEL 435

Query: 122 HIKTIKLPVNASRVMNGYAGANARRRASLDKQGPTVV----------HQKPGPLQTIFNL 171
            +K          +++ Y   N  +    D   P  +          H K         L
Sbjct: 436 KVKLENEYALHRSIVDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492

Query: 172 LPDEFVELSYSCVIERSFLYHG----------------RMYVSAWHICFHSNAFSRQMKV 215
               F++  +   +E+   +                  + Y    +IC +   + R +  
Sbjct: 493 FRMVFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYERLVNA 547

Query: 216 IIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRNHALR 275
           I     +D + + +   I    T +LR+         L + D  + +          A +
Sbjct: 548 I-----LDFLPKIEENLICSKYTDLLRIA--------LMAEDEAI-F--------EEAHK 585

Query: 276 QLQR 279
           Q+QR
Sbjct: 586 QVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.89
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.89
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.88
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.87
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.87
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.86
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.86
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.85
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.84
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.82
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.82
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.82
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.82
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.81
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.81
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.81
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.81
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.81
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.8
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.8
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.8
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.8
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.79
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.79
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.79
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.79
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.79
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.79
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.79
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.78
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.78
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.78
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.77
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.77
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.73
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.72
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.69
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.69
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.66
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.61
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.6
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.59
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.58
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.47
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.45
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.25
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.2
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.2
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.12
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.08
2hth_B	140	Vacuolar protein sorting protein 36; GLUE domain,	96.56
2cay_A	145	VPS36 PH domain, vacuolar protein sorting protein	95.94
1pfj_A	108	TFIIH basal transcription factor complex P62 subun	93.87
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	92.31
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	91.78
1zsq_A	528	Myotubularin-related protein 2; protein-phospholip	88.27
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	87.92
2yf0_A	512	Myotubularin-related protein 6; hydrolase; 2.65A {	87.04
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	86.77
1lw3_A	657	Myotubularin-related protein 2; protein-phosphate	86.34
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.39

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.89  E-value=3.3e-22  Score=164.34  Aligned_cols=123  Identities=28%  Similarity=0.455  Sum_probs=105.3

Q ss_pred             CCCCCCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEec
Q 021238            4 FKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDW   83 (315)
Q Consensus         4 ~~~~~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~   83 (315)
                      ..-+..+...+.|.|+|++|++|+++|.+|.+||||++.++....+|+++++++||.|||+|.|.+......|.|+|||+
T Consensus         7 ~~~~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~   86 (148)
T 3kwu_A            7 SVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDE   86 (148)
T ss_dssp             --------CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEEC
T ss_pred             cccccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEEC
Confidence            33344555689999999999999999999999999999999999999999999999999999999987778999999999


Q ss_pred             CCC-----------CCCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEee
Q 021238           84 DII-----------WKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (315)
Q Consensus        84 d~~-----------~~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~~~l~~~  126 (315)
                      |..           +++++||++.++|.++......|++|.+      ..|+|++++.+.
T Consensus        87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             CCCccccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence            985           7899999999999999777889999974      248888887764

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.89  E-value=1.9e-22  Score=162.98  Aligned_cols=119  Identities=23%  Similarity=0.421  Sum_probs=108.3

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (315)
                      .+..+.+.|.|+|++|++|++.|..|.+||||++.++....+|+++++++||.|||+|.|.+.+....|.|+|||+|..+
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999877788999999999998


Q ss_pred             CCceeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEee
Q 021238           88 KSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~~~l~~~  126 (315)
                      ++++||++.+++.++......|++|..      ..|++++++.+.
T Consensus        87 ~~~~lG~~~i~l~~l~~~~~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCeeEEEEEEHHHccCCCceEEEeecCCCCCccceEEEEEEEEE
Confidence            999999999999999777789999964      348888888764

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.88  E-value=3.5e-22  Score=166.15  Aligned_cols=114  Identities=15%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             CceeEEEEEEEEeecCCCCCC----------CCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANL----------NGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~----------~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~   79 (315)
                      ...|.|+|+|++|++|+++|.          .|.+||||++.++... .+|+++++|+||.|||+|.|.+.+ ...|.|+
T Consensus        26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~L~~~  104 (157)
T 2fk9_A           26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGHLELA  104 (157)
T ss_dssp             CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEE
T ss_pred             cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCEEEEE
Confidence            568999999999999999883          3679999999998765 599999999999999999999865 5689999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCC------CcccEEEEccCCCceEEEEEEee
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEG------QTGAVWYTLDSPSGQVCLHIKTI  126 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~------~~~~~w~~L~~~~G~i~~~l~~~  126 (315)
                      |||+|.+++|++||++.++|.++.      ...+.|++|++ .|++++++.+.
T Consensus       105 V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~-~G~i~l~l~~~  156 (157)
T 2fk9_A          105 VFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP-EGKVFVVITLT  156 (157)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS-SCEEEEEEEEC
T ss_pred             EEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC-CcEEEEEEEEE
Confidence            999999999999999999999862      44688999987 89999988764

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.87  E-value=3.4e-21  Score=159.16  Aligned_cols=120  Identities=19%  Similarity=0.328  Sum_probs=97.1

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~   81 (315)
                      ......+.|.|+|++|++|+.+|..|.+||||++++..      ...+|+++++++||.|||+|.|.+......|.|+||
T Consensus        14 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~   93 (153)
T 3b7y_A           14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVF   93 (153)
T ss_dssp             SCCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEE
T ss_pred             cCCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEE
Confidence            34567899999999999999999999999999999952      567999999999999999999999877788999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcc--------cEEEEccCC------CceEEEEEEeec
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTG--------AVWYTLDSP------SGQVCLHIKTIK  127 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~--------~~w~~L~~~------~G~i~~~l~~~~  127 (315)
                      |+|..+++++||++.++|.++....        ..|++|.++      .|+|++++.+.+
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            9999999999999999999873221        489999753      488888887753

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=5.1e-21  Score=155.70  Aligned_cols=121  Identities=18%  Similarity=0.317  Sum_probs=104.4

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEecC
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDWD   84 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d~d   84 (315)
                      ++...|.|.|+|++|++|+..|. |.+||||++++....++|+++++++||.|||+|.|.+..    ....|.|+|||+|
T Consensus         2 ~s~~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            2 SSGSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             CSCBCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCCCCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            45678999999999999999998 999999999998888999999999999999999999863    3578999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEE---ccCC-----CceEEEEEEeecCcc
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYT---LDSP-----SGQVCLHIKTIKLPV  130 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~---L~~~-----~G~i~~~l~~~~~~~  130 (315)
                      ..++|++||++.++|.++  +.....|++   |...     .|++++++.+.+.+.
T Consensus        81 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           81 TIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             CSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence            999999999999999997  344578988   5432     378888888876544

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.86  E-value=1.5e-21  Score=158.46  Aligned_cols=114  Identities=18%  Similarity=0.238  Sum_probs=100.0

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCC-----------CceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEE
Q 021238           12 SAYLIKLELLAAKNLIGANLNGT-----------SDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVT   79 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~-----------sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~   79 (315)
                      ..|.|.|+|++|++|+++|.+++           +||||++.++... .+|+++++|+||.|||+|.|.+.+. ..|.|+
T Consensus         4 ~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~~   82 (136)
T 1gmi_A            4 FNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIELA   82 (136)
T ss_dssp             EEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEEE
T ss_pred             cceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEEE
Confidence            46899999999999999886554           9999999997665 5999999999999999999998764 889999


Q ss_pred             EEecCCCCCCceeEEEEEEcccCCC----cccEEEEccCCCceEEEEEEeec
Q 021238           80 IYDWDIIWKSTVLGSVIVTVESEGQ----TGAVWYTLDSPSGQVCLHIKTIK  127 (315)
Q Consensus        80 V~d~d~~~~dd~iG~~~i~l~~l~~----~~~~w~~L~~~~G~i~~~l~~~~  127 (315)
                      |||+|..++|++||++.+++.++..    ..+.|++|.+ .|++++++.+..
T Consensus        83 V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~-~G~i~l~l~~~~  133 (136)
T 1gmi_A           83 VFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSG  133 (136)
T ss_dssp             EEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             EEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC-CeEEEEEEEEEe
Confidence            9999999999999999999998632    2378999987 799999998754

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=2.4e-21  Score=156.90  Aligned_cols=122  Identities=21%  Similarity=0.361  Sum_probs=107.0

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecCCCcEEEEEEEecCCC
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~   86 (315)
                      .+..+.+.|.|+|++|++|+..|..|.+||||++++.....+|++++ +++||.|||+|.|.+.+....|.|+|||+|..
T Consensus         4 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCC
Confidence            34567999999999999999999999999999999988889999998 89999999999999987778999999999999


Q ss_pred             CCCceeEEEEEEcccC---CCcccEEEEccC---CCceEEEEEEeecCc
Q 021238           87 WKSTVLGSVIVTVESE---GQTGAVWYTLDS---PSGQVCLHIKTIKLP  129 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~~~~~~w~~L~~---~~G~i~~~l~~~~~~  129 (315)
                      ++|++||++.++|.++   +.....|++|..   ..|++++++.+.+..
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~  132 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSG  132 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECC
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCC
Confidence            9999999999999987   333578999962   247788888777653

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.86  E-value=1.3e-20  Score=159.63  Aligned_cols=120  Identities=20%  Similarity=0.312  Sum_probs=97.7

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEe
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYD   82 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d   82 (315)
                      +....|.|.|+|++|++|+.++..|++||||++++..      ..++|+++++++||.|||+|.|.+......|.|+|||
T Consensus         3 ~~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d   82 (176)
T 3m7f_B            3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFD   82 (176)
T ss_dssp             CCTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEE
Confidence            4567899999999999999999999999999999953      5679999999999999999999998767889999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCc-cc-------EEEEccC------CCceEEEEEEeecC
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQT-GA-------VWYTLDS------PSGQVCLHIKTIKL  128 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~-~~-------~w~~L~~------~~G~i~~~l~~~~~  128 (315)
                      +|.++++++||++.++|.++... ..       .|++|.+      ..|+|++++.+.+.
T Consensus        83 ~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           83 ENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             CC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999997322 11       7999975      25889999998876

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.85  E-value=2.7e-20  Score=150.07  Aligned_cols=113  Identities=24%  Similarity=0.386  Sum_probs=96.6

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC--EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCC-
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWK-   88 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~--~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~-   88 (315)
                      ....|+|+|++|++|+++|..|.+||||+++++.  ...+|+++++++||.|||+|.|.+.... .|.|+|||+|..++ 
T Consensus         3 ~~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~   81 (132)
T 3pyc_A            3 EFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKK   81 (132)
T ss_dssp             SEEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSS
T ss_pred             CeEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCC
Confidence            4678999999999999999999999999999964  6789999999999999999999997643 49999999998876 


Q ss_pred             --CceeEEEEEEcccC---CCcccEEEEccCC--------CceEEEEEEe
Q 021238           89 --STVLGSVIVTVESE---GQTGAVWYTLDSP--------SGQVCLHIKT  125 (315)
Q Consensus        89 --dd~iG~~~i~l~~l---~~~~~~w~~L~~~--------~G~i~~~l~~  125 (315)
                        |++||++.+++.++   ......|++|..+        .|+|++++..
T Consensus        82 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           82 QGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence              89999999998876   4455789999753        4777776653

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.84  E-value=2.7e-20  Score=148.51  Aligned_cols=112  Identities=20%  Similarity=0.362  Sum_probs=95.0

Q ss_pred             eeEEEEEEEEeecCCCC---CCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEec-CCCcEEEEEEEecCC
Q 021238           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVD-ELPVQIIVTIYDWDI   85 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~---d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~-~~~~~L~~~V~d~d~   85 (315)
                      .+.|.|+|++|++|+++   |..|.+||||+++++.   ..++|+++++++||.|||+|.|.+. .....|.|+|||+|.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            57899999999999984   6679999999999964   6789999999999999999999995 456789999999998


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCCCceEEEEEEee
Q 021238           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSPSGQVCLHIKTI  126 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~G~i~~~l~~~  126 (315)
                      . ++++||++.++|.++  +.....|++|.+ .|++.+.+.+.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~~~~~~L~~-~~~g~i~~~le  122 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQ-VTEMVLEMSLE  122 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETT-TEEEEEEEEEE
T ss_pred             C-CCceeEEEEEEHHHccCCCcEEEEEEcCC-CceEEEEEEEE
Confidence            7 489999999999997  344568999986 45555555544

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=4.5e-19  Score=160.75  Aligned_cols=166  Identities=17%  Similarity=0.279  Sum_probs=126.9

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d   84 (315)
                      ...+.|.|+|++|++|+++|..|.+||||++++.   ....+|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        16 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d   95 (284)
T 2r83_A           16 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFD   95 (284)
T ss_dssp             TTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECC
Confidence            4578999999999999999999999999999994   346799999999999999999999853   2578999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC-------CceEEEEEEeecCccccccccccccccccccccccccCCC
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQGP  155 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~~~  155 (315)
                      .++++++||++.++|.++  +.....|++|.+.       .|++.+.+.+.+...           ......+++..+..
T Consensus        96 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~-----------~l~v~v~~a~~L~~  164 (284)
T 2r83_A           96 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAG-----------KLTVVILEAKNLKK  164 (284)
T ss_dssp             SSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTT-----------EEEEEEEEEESCCC
T ss_pred             CCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCC-----------ceEEEEEEeECCCC
Confidence            999999999999999997  3456789999642       477777776654211           11112223455556


Q ss_pred             cccccCCCCceeeccCCc--------ccceeecceeeeee
Q 021238          156 TVVHQKPGPLQTIFNLLP--------DEFVELSYSCVIER  187 (315)
Q Consensus       156 ~~~~~k~~~f~~~F~lp~--------~E~l~~~~~c~l~~  187 (315)
                      .+...++++|.++.-.+.        .+...++.++.|..
T Consensus       165 ~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne  204 (284)
T 2r83_A          165 MDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNE  204 (284)
T ss_dssp             CSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEE
T ss_pred             cCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEce
Confidence            666677889988874332        23455667777765

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.82  E-value=1.2e-19  Score=146.95  Aligned_cols=103  Identities=15%  Similarity=0.310  Sum_probs=90.5

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEEEe
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V~d   82 (315)
                      ..+.|.|+|++|++|+. +..|.+||||++++     .....+|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            46889999999999997 77899999999998     3457799999999999999999999 752   35789999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC--CcccEEEEccCC
Q 021238           83 WDIIWKSTVLGSVIVTVESEG--QTGAVWYTLDSP  115 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~~  115 (315)
                      +|..+++++||++.++|.++.  .....|++|.++
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~  131 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKWYQLTAA  131 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC-
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCc
Confidence            999999999999999999973  456789999863

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.82  E-value=3.3e-20  Score=154.13  Aligned_cols=104  Identities=14%  Similarity=0.124  Sum_probs=91.7

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~   81 (315)
                      ...+.|.|+|++|++|+++|.+|.+||||++++..      .+++|+++++|+||.|||+|.|.+..   ....|.|+||
T Consensus        40 ~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~  119 (155)
T 2z0u_A           40 EKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVC  119 (155)
T ss_dssp             TTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEE
Confidence            35678999999999999999999999999999943      26799999999999999999999853   2567999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC---CCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE---GQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l---~~~~~~w~~L~~  114 (315)
                      |+|..+++++||++.++|.++   ......|++|.+
T Consensus       120 d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~~  155 (155)
T 2z0u_A          120 TTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS  155 (155)
T ss_dssp             EECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHccCCCCccccceEccC
Confidence            999999999999999999997   345678999863

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.82  E-value=1.8e-19  Score=152.29  Aligned_cols=117  Identities=12%  Similarity=0.220  Sum_probs=97.7

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd   90 (315)
                      ...+.|.|+|++|++|+..+..+.+||||+++++....+|+++++++||.|||+|.|.+.+ ...|.|+|||+|.+++|+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCc
Confidence            3578899999999999944445569999999998888899999999999999999999864 788999999999999999


Q ss_pred             eeEEEEEEcccCC---C----cccEEEEccCC------CceEEEEEEeecC
Q 021238           91 VLGSVIVTVESEG---Q----TGAVWYTLDSP------SGQVCLHIKTIKL  128 (315)
Q Consensus        91 ~iG~~~i~l~~l~---~----~~~~w~~L~~~------~G~i~~~l~~~~~  128 (315)
                      +||++.++|.++.   .    ....|++|..+      .|+|.+.+.+...
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            9999999999861   1    12569999753      4777777776655

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.81  E-value=8e-20  Score=149.19  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=92.8

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d   84 (315)
                      ...+.|.|+|++|++|+..|..+.+||||++++   +....+|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        31 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  110 (143)
T 3f04_A           31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCC
Confidence            467899999999999999999999999999999   4557899999999999999999999853   2478999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      ..+++++||++.++|.++  +.....|++|.+
T Consensus       111 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            999999999999999997  345678999975

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=1.5e-19  Score=144.81  Aligned_cols=103  Identities=22%  Similarity=0.395  Sum_probs=86.0

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~   81 (315)
                      +..+.|.|+|++|++|+.+|..|.+||||++.+     +....+|+++++++||.|||+|.|.+..    ....|.|+||
T Consensus        15 ~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~   94 (129)
T 2bwq_A           15 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   94 (129)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             cCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEE
Confidence            456899999999999999999999999999998     3567899999999999999999999532    2568999999


Q ss_pred             ecCCCCC--CceeEEEEEEcccC-CCcccEEEEcc
Q 021238           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLD  113 (315)
Q Consensus        82 d~d~~~~--dd~iG~~~i~l~~l-~~~~~~w~~L~  113 (315)
                      |+|..++  +++||++.++|.++ ......|++|+
T Consensus        95 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~Lq  129 (129)
T 2bwq_A           95 DQARVREEESEFLGEILIELETALLDDEPHWYKLQ  129 (129)
T ss_dssp             EC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             ECCcCcCcCCceeEEEEEEccccCCCcCCccEECc
Confidence            9999887  99999999999997 33467899984

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.81  E-value=2e-19  Score=146.57  Aligned_cols=105  Identities=20%  Similarity=0.350  Sum_probs=92.3

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC----CCcEEEEEEEec
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE----LPVQIIVTIYDW   83 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~~L~~~V~d~   83 (315)
                      ...+.|.|+|++|++|+.+|..|.+||||++++.   ....+|+++++++||.|||+|.|.+..    ....|.|+|||+
T Consensus        23 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~  102 (141)
T 2d8k_A           23 FQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDY  102 (141)
T ss_dssp             SSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEEC
T ss_pred             CCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEEC
Confidence            4678899999999999999999999999999993   457799999999999999999998532    357899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      |..+++++||++.++|.++  +.....|++|.++
T Consensus       103 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A          103 DRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             CSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             CCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            9999999999999999997  3446789999864

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.81  E-value=6.2e-20  Score=150.89  Aligned_cols=106  Identities=15%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             CceeEEEEEEEEeecCCCCC-CCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~   81 (315)
                      +..+.|.|+|++|++|+.+| ..|.+||||++.+.     ....+|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        20 ~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~   99 (148)
T 3fdw_A           20 QQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVW   99 (148)
T ss_dssp             TTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEE
Confidence            45789999999999999988 68999999999984     3477999999999999999999998642   456999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (315)
                      |+|..+++++||++.++|.++  ......|++|.++.
T Consensus       100 d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~~  136 (148)
T 3fdw_A          100 HHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGKI  136 (148)
T ss_dssp             EECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC-
T ss_pred             ECCCCcCCcEEEEEEEEcccccccCCccceEECcCcc
Confidence            999999999999999999987  44567999998754

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=1.9e-19  Score=148.62  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=92.6

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d   84 (315)
                      ...+.|.|+|++|++|+..|..+.+||||++++   +....+|+++++++||.|||+|.|.+..   ....|.|+|||+|
T Consensus        39 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  118 (152)
T 1rsy_A           39 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  118 (152)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECC
Confidence            356799999999999999999999999999999   3457799999999999999999998853   3578999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      ..+++++||++.++|.++  +.....|++|.+
T Consensus       119 ~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          119 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            999999999999999997  445688999975

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=3.2e-19  Score=146.74  Aligned_cols=102  Identities=27%  Similarity=0.471  Sum_probs=91.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCC
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~   85 (315)
                      .+.|.|+|++|++|+.+|..+.+||||++++.     ....+|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46799999999999999999999999999995     457799999999999999999999864  24689999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 021238           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (315)
                      .+++++||++.++|.++ ......|++|.+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~~~~W~~L~~  139 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  139 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCEEEEEEEEHHHhCcCccCCeEEccC
Confidence            99999999999999987 335678999975

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.80  E-value=6.6e-20  Score=149.42  Aligned_cols=104  Identities=25%  Similarity=0.447  Sum_probs=91.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE--------------EEEeecccCCCCCeecceEEEE-ecC---CCc
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE--------------KRFSSMVPGSRYPMWGEEFNFS-VDE---LPV   74 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~--------------~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~   74 (315)
                      .+.|.|+|++|++|+++|..|.+||||++++...              ..+|+++++++||.|||+|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            5689999999999999999999999999999542              4689999999999999999997 532   367


Q ss_pred             EEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 021238           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (315)
Q Consensus        75 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (315)
                      .|.|+|||+|..+++++||++.++|.++  ......|++|.++.
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            8999999999999999999999999987  34567999998754

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.80  E-value=1.8e-18  Score=158.08  Aligned_cols=168  Identities=15%  Similarity=0.228  Sum_probs=126.2

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEec
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d~   83 (315)
                      ....+.|.|+|++|++|+.+|.+|.+||||++++   +....+|+++++++||.|||+|.|.+...   ...|+|+|||+
T Consensus        16 ~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~   95 (296)
T 1dqv_A           16 LYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDF   95 (296)
T ss_dssp             CSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEEC
T ss_pred             eCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEc
Confidence            3467899999999999999999999999999999   45678999999999999999999998532   45799999999


Q ss_pred             CCCCCCceeEEEEEE-ccc---CCCcccEEEEccCC------CceEEEEEEeecCccccccccccccccccccccccccC
Q 021238           84 DIIWKSTVLGSVIVT-VES---EGQTGAVWYTLDSP------SGQVCLHIKTIKLPVNASRVMNGYAGANARRRASLDKQ  153 (315)
Q Consensus        84 d~~~~dd~iG~~~i~-l~~---l~~~~~~w~~L~~~------~G~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~k~  153 (315)
                      |.++++++||++.++ +.+   .......|++|.+.      .|++.+.+.+.+..           +......+++..+
T Consensus        96 d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~-----------~~l~v~v~~a~~L  164 (296)
T 1dqv_A           96 DRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTA-----------GLLTVTIIKASNL  164 (296)
T ss_dssp             CSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTT-----------TEEEEEEEEEESC
T ss_pred             CCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEecccc-----------ceeEEEEEEeecC
Confidence            999999999999995 333   34456789999642      37777777765431           1111122344555


Q ss_pred             CCcccccCCCCceeeccCCcc--------cceeecceeeeeee
Q 021238          154 GPTVVHQKPGPLQTIFNLLPD--------EFVELSYSCVIERS  188 (315)
Q Consensus       154 ~~~~~~~k~~~f~~~F~lp~~--------E~l~~~~~c~l~~~  188 (315)
                      ...+..+++++|.++.-.+.+        ....++.++.|...
T Consensus       165 ~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~  207 (296)
T 1dqv_A          165 KAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEA  207 (296)
T ss_dssp             CCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEEC
T ss_pred             CccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECce
Confidence            566667778999888754322        34556677877763

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.79  E-value=2.4e-19  Score=151.15  Aligned_cols=104  Identities=16%  Similarity=0.280  Sum_probs=91.3

Q ss_pred             ceeEEEEEEEEeecCCCCCC-CCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCCCcEEEEEEE-ecC
Q 021238           12 SAYLIKLELLAAKNLIGANL-NGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIY-DWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~-~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~-d~d   84 (315)
                      ..+.|.|+|++|++|+.+|. .|.+||||++++.  .   ..++|+++++++||.|||+|.|.+......|.|+|| |+|
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            46789999999999999995 7999999999984  2   367999999999999999999998766788999999 999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      ..+++++||++.++|.++  +.....|++|.++
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            999999999999999997  4567889999864

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=7.9e-19  Score=142.72  Aligned_cols=102  Identities=16%  Similarity=0.212  Sum_probs=88.4

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC---C-EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEec
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG---S-EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~---~-~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d~   83 (315)
                      ...+.|.|+|++|+   ++|.+|.+||||++++.   . ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T 1wfm_A           23 CQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEEC
Confidence            35678999999999   46789999999999982   2 356999999999999999999998642   46899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      |.++++++||++.++|.++  ......|++|.+.
T Consensus       100 d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A          100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            9999999999999999997  4567899999863

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.79  E-value=3.5e-19  Score=147.33  Aligned_cols=105  Identities=26%  Similarity=0.423  Sum_probs=91.5

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEe--cCCCcEEEEEEEe
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV--DELPVQIIVTIYD   82 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v--~~~~~~L~~~V~d   82 (315)
                      ....+.|.|+|++|++|+++| .|.+||||++.+     .....+|+++++++||.|||+|.|.+  .+....|.|+|||
T Consensus        23 ~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d  101 (153)
T 3fbk_A           23 DAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWN  101 (153)
T ss_dssp             EESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEE
T ss_pred             ECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEe
Confidence            346789999999999999999 799999999998     23467999999999999999999998  3445679999999


Q ss_pred             cCCCCC-CceeEEEEEEcccCC---CcccEEEEccCC
Q 021238           83 WDIIWK-STVLGSVIVTVESEG---QTGAVWYTLDSP  115 (315)
Q Consensus        83 ~d~~~~-dd~iG~~~i~l~~l~---~~~~~w~~L~~~  115 (315)
                      +|..++ +++||++.++|.++.   .....|++|.++
T Consensus       102 ~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~  138 (153)
T 3fbk_A          102 RASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGE  138 (153)
T ss_dssp             CCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCT
T ss_pred             CCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCCh
Confidence            999877 999999999999863   566789999864

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=6.8e-19  Score=142.84  Aligned_cols=105  Identities=18%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             CceeEEEEEEEEeecCCCCCCC-CCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEEEe
Q 021238           11 NSAYLIKLELLAAKNLIGANLN-GTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTIYD   82 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~-g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V~d   82 (315)
                      ...+.|.|+|++|++|+.+|.. +.+||||++++.   ...++|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        19 ~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d   98 (138)
T 1ugk_A           19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEE
Confidence            3567899999999999999985 899999999994   367899999999999999999996 543   24689999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCC---cccEEEEccCC
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQ---TGAVWYTLDSP  115 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~---~~~~w~~L~~~  115 (315)
                      +|..+++++||++.++|.++..   ....|++|.++
T Consensus        99 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           99 FDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             CCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence            9999999999999999999732   33567999764

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.79  E-value=2.9e-19  Score=145.22  Aligned_cols=105  Identities=22%  Similarity=0.399  Sum_probs=91.2

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~   81 (315)
                      +..+.|.|+|++|++|+.+|..|.+||||++++     ....++|+++++++||.|||+|.|.+ ..   ....|.|+||
T Consensus        18 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~   97 (141)
T 1v27_A           18 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   97 (141)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEE
T ss_pred             CCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEE
Confidence            346889999999999999999999999999998     34567999999999999999999994 32   2478999999


Q ss_pred             ecCCCCC--CceeEEEEEEcccC-CCcccEEEEccCC
Q 021238           82 DWDIIWK--STVLGSVIVTVESE-GQTGAVWYTLDSP  115 (315)
Q Consensus        82 d~d~~~~--dd~iG~~~i~l~~l-~~~~~~w~~L~~~  115 (315)
                      |+|..++  +++||++.++|.++ ......|++|.++
T Consensus        98 d~d~~~~~~~~~lG~~~i~l~~l~~~~~~~W~~L~~~  134 (141)
T 1v27_A           98 DQARVREEESEFLGEILIELETALLDDEPHWYKLQTH  134 (141)
T ss_dssp             EBCSSSSCCBCCCEEEEEEGGGCCCSSEEEEEECBCC
T ss_pred             ECCCCcCCCCceEEEEEEEccccCCCCCCceEECccc
Confidence            9999887  99999999999997 3446789999863

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.79  E-value=6.6e-19  Score=143.56  Aligned_cols=104  Identities=18%  Similarity=0.311  Sum_probs=90.2

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEE-ecCC---CcEEEEEEE
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFS-VDEL---PVQIIVTIY   81 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~-v~~~---~~~L~~~V~   81 (315)
                      ...+.|.|+|++|++|+.++..|.+||||++++..     ...+|+++++++||.|||+|.|. +...   ...|.|+||
T Consensus        26 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~  105 (142)
T 2chd_A           26 QDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC  105 (142)
T ss_dssp             GGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEE
Confidence            35778999999999999999999999999999953     67899999999999999999998 5421   368999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCC--CcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESEG--QTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~--~~~~~w~~L~~  114 (315)
                      |+|..+++++||++.++|.++.  .....|++|+.
T Consensus       106 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A          106 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             EECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             ECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            9999999999999999999984  44566788864

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.79  E-value=8.8e-19  Score=141.74  Aligned_cols=105  Identities=26%  Similarity=0.400  Sum_probs=89.8

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~   81 (315)
                      .+..+.|.|+|++|++|+..|..|.+||||++++..     ...+|+++++++||.|||+|.|.+...   ...|.|+||
T Consensus        12 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~   91 (138)
T 3n5a_A           12 NPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVM   91 (138)
T ss_dssp             ETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEE
T ss_pred             cCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEE
Confidence            345789999999999999999999999999999842     466999999999999999999998643   367999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      |+|..+++++||++.+++.++......|++|..
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~  124 (138)
T 3n5a_A           92 DKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIA  124 (138)
T ss_dssp             ECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHH
T ss_pred             ECCCCCCCcEEEEEEEccccCChHHHHHHHHHh
Confidence            999999999999999999986555555666543

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.78  E-value=2.4e-19  Score=150.19  Aligned_cols=103  Identities=17%  Similarity=0.338  Sum_probs=89.8

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-----EEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-----~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~   83 (315)
                      ..+.|.|+|++|++|+.+|.+|.+||||++++..     ...+|+++++++||.|||+|.|.+..   ....|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            5678999999999999999999999999999953     57799999999999999999999854   245899999999


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      |..+++++||++.+++.+++.....|++|..
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  145 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGERLKHWYECLK  145 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             CCCCCCcEEEeEEEecccCCchhHHHHHHHh
Confidence            9999999999999999987555556666653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.78  E-value=2e-18  Score=143.49  Aligned_cols=104  Identities=33%  Similarity=0.472  Sum_probs=89.2

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEe
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d   82 (315)
                      +..+.|.|+|++|++|+.+|..|.+||||++++.  .   ...+|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        22 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d  101 (159)
T 1tjx_A           22 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLD  101 (159)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEE
Confidence            4578999999999999999999999999999984  2   466999999999999999999998542   4579999999


Q ss_pred             cCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (315)
                      +|..+++++||++.+++..+              ......|++|.+
T Consensus       102 ~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A          102 YDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            99999999999999999854              234567777764

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=5.7e-19  Score=143.93  Aligned_cols=106  Identities=26%  Similarity=0.399  Sum_probs=90.1

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEe
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d   82 (315)
                      ...+.|.|+|++|++|+++|..| +||||++++.     ...++|+++++++||.|||+|.|.+..   ....|.|+|||
T Consensus        21 ~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d   99 (142)
T 2dmg_A           21 SQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKN   99 (142)
T ss_dssp             TTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEE
Confidence            34678999999999999999999 9999999983     256799999999999999999999853   24589999999


Q ss_pred             cCCCCC--CceeEEEEEEcccC--CCcccEEEEccCCCc
Q 021238           83 WDIIWK--STVLGSVIVTVESE--GQTGAVWYTLDSPSG  117 (315)
Q Consensus        83 ~d~~~~--dd~iG~~~i~l~~l--~~~~~~w~~L~~~~G  117 (315)
                      +|.++.  +++||++.++|.++  ......|++|.++.+
T Consensus       100 ~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~~~  138 (142)
T 2dmg_A          100 SGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTEDSG  138 (142)
T ss_dssp             CCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCSCS
T ss_pred             CCCccccCCcEEEEEEEecccccccccccceeeccCCCC
Confidence            998764  57999999999987  346778999987543

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.77  E-value=6.4e-19  Score=145.52  Aligned_cols=104  Identities=18%  Similarity=0.369  Sum_probs=83.5

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCE---EEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEe
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE---KRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYD   82 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~---~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d   82 (315)
                      +..+.|.|+|++|++|+.+|..|.+||||++++  +..   .++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        27 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d  106 (153)
T 1w15_A           27 STTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLD  106 (153)
T ss_dssp             TTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEe
Confidence            356789999999999999999999999999998  433   56999999999999999999998653   3679999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      +|..+++++||++.+++.+.......|++|..
T Consensus       107 ~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~  138 (153)
T 1w15_A          107 SERGSRNEVIGRLVLGATAEGSGGGHWKEICD  138 (153)
T ss_dssp             CCTTSCCEEEEEEEESTTCCSHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEEEECCCCCchHHHHHHHHHh
Confidence            99999999999999999886555556666643

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=8.3e-19  Score=143.86  Aligned_cols=105  Identities=18%  Similarity=0.308  Sum_probs=89.0

Q ss_pred             CceeEEEEEEEEeecCCCC-CC------CCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC---CCcEEE
Q 021238           11 NSAYLIKLELLAAKNLIGA-NL------NGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQII   77 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~-d~------~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~   77 (315)
                      +..+.|.|+|++|++|+.. |.      .+.+||||++++.   ....+|+++++++||.|||+|.|.+..   ....|.
T Consensus        23 ~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~  102 (147)
T 2enp_A           23 LLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLL  102 (147)
T ss_dssp             TTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEE
T ss_pred             CCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEE
Confidence            3567899999999999984 43      4589999999984   356799999999999999999999853   245899


Q ss_pred             EEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           78 VTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        78 ~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      |+|||+|.++++++||++.++|.++  ......|++|.++
T Consensus       103 ~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A          103 LTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             EEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            9999999999999999999999997  3445689999864

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.73  E-value=2.5e-17  Score=161.52  Aligned_cols=110  Identities=20%  Similarity=0.302  Sum_probs=97.5

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEec--CCCcEEEEEEEecCCCCCC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVD--ELPVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~--~~~~~L~~~V~d~d~~~~d   89 (315)
                      ..+.|.|+|++|++|+. |.+|++||||+|+++....+|+++++++||.|||+|.|.+.  +....|+|+|||+|..++|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            48899999999999998 99999999999999988899999999999999999999864  3577899999999999999


Q ss_pred             ceeEEEEEEcccCCCcccEEEEccCCCceEEEEEEee
Q 021238           90 TVLGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIKTI  126 (315)
Q Consensus        90 d~iG~~~i~l~~l~~~~~~w~~L~~~~G~i~~~l~~~  126 (315)
                      |+||++.++|..  +....|++|+  .|.+++++++.
T Consensus       471 D~LG~~~~~L~~--g~~~~~~~l~--~G~l~~~~~~~  503 (540)
T 3nsj_A          471 DLLGSCDRSPHS--GFHEVTCELN--HGRVKFSYHAK  503 (540)
T ss_dssp             EEEEEEEECCCS--EEEEEEEECS--SSEEEEEEEEE
T ss_pred             CEEEEEEEEeeC--CcEEEEEEcC--CeEEEEEEEEE
Confidence            999999999973  3346788875  58888887754

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.72  E-value=7.6e-17  Score=157.66  Aligned_cols=116  Identities=21%  Similarity=0.347  Sum_probs=101.8

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCCCCCC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~~~~d   89 (315)
                      ...+.|.|+|++|++|+++|.+|.+||||++.++....+|+++++|+||.|||+|.|.+... ...|+|+|||+|..++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            35789999999999999999999999999999999999999999999999999999999654 46799999999999999


Q ss_pred             ceeEEEEEEcccCC------CcccEEEEccC-CCceEEEEEEee
Q 021238           90 TVLGSVIVTVESEG------QTGAVWYTLDS-PSGQVCLHIKTI  126 (315)
Q Consensus        90 d~iG~~~i~l~~l~------~~~~~w~~L~~-~~G~i~~~l~~~  126 (315)
                      ++||++.+++.++.      .....|++|.+ ..|++.+.+.+.
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            99999999999862      22578999975 468888877653

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=1.9e-16  Score=127.58  Aligned_cols=85  Identities=16%  Similarity=0.320  Sum_probs=73.2

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd   90 (315)
                      ..+.|.|+|++|++|..   .|.+||||++..  ...+|.++. +++||.|||+|.|.+.+....|.|+|||+| .++|+
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   76 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLKV--QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   76 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEEE--TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEE
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEEe--cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCC
Confidence            45899999999998852   688999999993  234555555 799999999999999877778999999999 88999


Q ss_pred             eeEEEEEEcccC
Q 021238           91 VLGSVIVTVESE  102 (315)
Q Consensus        91 ~iG~~~i~l~~l  102 (315)
                      +||++.++|.++
T Consensus        77 ~iG~~~i~l~~l   88 (131)
T 2cjt_A           77 MVGTVWIPLRTI   88 (131)
T ss_dssp             EEEEEEEEGGGS
T ss_pred             eEEEEEEEHHHh
Confidence            999999999997

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.69  E-value=2e-16  Score=132.79  Aligned_cols=88  Identities=16%  Similarity=0.289  Sum_probs=75.6

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecCCCcEEEEEEEecCCCC
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIW   87 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~   87 (315)
                      .....+.|.|+|++|++|.   ..|.+||||++..  ...+|++++ +++||.|||+|.|.+.+....|.|+|||+| .+
T Consensus         9 ~~g~~~~L~V~V~~A~~l~---~~g~~DPYV~v~~--~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~   82 (167)
T 2cjs_A            9 GGGILSLLCVGVKKAKFDG---AQEKFNTYVTLKV--QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LI   82 (167)
T ss_dssp             CCSCCCEEEEEEEEEECSS---CGGGCEEEEEEEE--TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SS
T ss_pred             CCCceEEEEEEEEEEECCC---CCCCCCeEEEEEe--cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CC
Confidence            3445789999999999884   3788999999993  234666665 699999999999999877778999999999 88


Q ss_pred             CCceeEEEEEEcccC
Q 021238           88 KSTVLGSVIVTVESE  102 (315)
Q Consensus        88 ~dd~iG~~~i~l~~l  102 (315)
                      +|++||++.++|.++
T Consensus        83 ~dd~iG~~~i~L~~l   97 (167)
T 2cjs_A           83 WDTMVGTVWIPLRTI   97 (167)
T ss_dssp             CCEEEEEEEEEGGGS
T ss_pred             CCceEEEEEEEHHHh
Confidence            999999999999997

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=8.6e-16  Score=139.08  Aligned_cols=103  Identities=33%  Similarity=0.480  Sum_probs=88.0

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEec
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d~   83 (315)
                      ..+.|.|+|++|++|+.+|.+|.+||||++++.  .   ...+|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            467899999999999999999999999999983  2   356999999999999999999998643   34799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 021238           84 DIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (315)
                      |..+++++||++.+++..+              .....+|++|.+
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             CCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence            9999999999999999763              234457888765

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.61  E-value=1.5e-15  Score=153.43  Aligned_cols=104  Identities=20%  Similarity=0.361  Sum_probs=93.3

Q ss_pred             CceeEEEEEEEEeecCCC---CCCCCCCceEEEEEEC---CEEEEeecccCCCCCeecceEEEEecC-CCcEEEEEEEec
Q 021238           11 NSAYLIKLELLAAKNLIG---ANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEFNFSVDE-LPVQIIVTIYDW   83 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~---~d~~g~sDPyv~v~l~---~~~~rT~vi~~tlnP~w~e~f~f~v~~-~~~~L~~~V~d~   83 (315)
                      .+.+.|.|+|++|++|++   +|..|++||||++++.   ..+++|+++++++||.|||+|.|.+.. ....|+|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            468999999999999999   8889999999999996   467899999999999999999999975 467899999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      |..+ |++||++.++|.++  +.....|++|.+.
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~~~  127 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQV  127 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCCCEEEEETTT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCceEEEEecCCC
Confidence            9998 99999999999997  3446789999863

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.60  E-value=1.3e-14  Score=144.99  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=92.5

Q ss_pred             ceeEEEEEEEEeecCCCCCC--CCCCceEEEEEEC-----CEEEEeecccCC-CCCeecceEEEEecCC-CcEEEEEEEe
Q 021238           12 SAYLIKLELLAAKNLIGANL--NGTSDPYAIITCG-----SEKRFSSMVPGS-RYPMWGEEFNFSVDEL-PVQIIVTIYD   82 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~--~g~sDPyv~v~l~-----~~~~rT~vi~~t-lnP~w~e~f~f~v~~~-~~~L~~~V~d   82 (315)
                      ..+.|+|+|++|++|+..+.  .|.+||||+|.+.     ..+.+|++++++ +||.|||+|.|.+..+ ...|+|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            57899999999999999884  7899999999993     367899999987 9999999999999754 4689999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      +|..+++++||++.++|..+..+ ..|++|....|+
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G-~r~v~L~d~~g~  609 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  609 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC-cEEEeCCCCCcC
Confidence            99999999999999999998664 469999765554

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.59  E-value=3.3e-16  Score=143.08  Aligned_cols=101  Identities=27%  Similarity=0.407  Sum_probs=86.3

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEEec
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIYDW   83 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~d~   83 (315)
                      ..+.|.|+|++|++|+.+|..|.+||||++++.     ..+++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            468899999999999999999999999999984     2467999999999999999999998643   35799999999


Q ss_pred             CCCCCCceeEEEEEEcccCCC-cccEEEEc
Q 021238           84 DIIWKSTVLGSVIVTVESEGQ-TGAVWYTL  112 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~-~~~~w~~L  112 (315)
                      |..+++++||++.+++..++. ...+|+.+
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~  259 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADPHGREHWAEM  259 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCHHHHHHHHTS
T ss_pred             CCCCCCceEEEEEECCccCCchhHHHHHHH
Confidence            999999999999999987654 33445444

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.58  E-value=3.5e-14  Score=114.32  Aligned_cols=113  Identities=14%  Similarity=0.236  Sum_probs=91.9

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecC---CCcEEEEEEEecCCC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII   86 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~   86 (315)
                      +...-|+|.|.+|.+|+     |++|||+++.+...+++|+++. ++.||.|||.|++++..   .+..|.+.|+|++++
T Consensus        18 ~~~msL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v   92 (144)
T 3l9b_A           18 GSHMALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKV   92 (144)
T ss_dssp             -CCEEEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTT
T ss_pred             CCcEEEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccc
Confidence            45677999999999998     5899999999999999999998 69999999999999853   467899999999999


Q ss_pred             CCCceeEEEEEEcccCC--CcccEEEEccCCC-----ceEEEEEEeecC
Q 021238           87 WKSTVLGSVIVTVESEG--QTGAVWYTLDSPS-----GQVCLHIKTIKL  128 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l~--~~~~~w~~L~~~~-----G~i~~~l~~~~~  128 (315)
                      +++++||++.++|.++.  +....+.+|...+     +.+.+.+.|.+.
T Consensus        93 ~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp  141 (144)
T 3l9b_A           93 FSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAA  141 (144)
T ss_dssp             SCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEET
T ss_pred             cCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCC
Confidence            99999999999999973  2233455564332     455666666553

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.47  E-value=2.9e-15  Score=145.81  Aligned_cols=98  Identities=21%  Similarity=0.294  Sum_probs=15.0

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCE-EEEeecccCC---CCCeecceEEEEecCCCcEEEEEEEec-C-
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSE-KRFSSMVPGS---RYPMWGEEFNFSVDELPVQIIVTIYDW-D-   84 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-~~rT~vi~~t---lnP~w~e~f~f~v~~~~~~L~~~V~d~-d-   84 (315)
                      ...+.|.|+|++|++|+++|     ||||+++++.. ..||+++++|   +||.|||+|.|.+.+....|.|+|||. | 
T Consensus         8 r~~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~   82 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDK   82 (483)
T ss_dssp             EEEECC--------------------------------------------------CCEECC------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCc
Confidence            45788999999999999887     99999999765 5699999999   999999999998755467899999994 5 


Q ss_pred             --CCCCCceeEEEEEEcccC--CCcccEEEEcc
Q 021238           85 --IIWKSTVLGSVIVTVESE--GQTGAVWYTLD  113 (315)
Q Consensus        85 --~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~  113 (315)
                        ..++|++||.+.+++.++  +...+.|++|.
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~  115 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVT  115 (483)
T ss_dssp             ------------------------CCEECC---
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECC
Confidence              367899999999999997  34567899994

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.45  E-value=1.3e-13  Score=139.39  Aligned_cols=102  Identities=27%  Similarity=0.494  Sum_probs=90.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC--CCcEEEEEEEecCC
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE--LPVQIIVTIYDWDI   85 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~--~~~~L~~~V~d~d~   85 (315)
                      .+.|.|+|++|++|.++|.+|.+||||++.+     ...+.+|+++++++||.|||+|.|.+..  ....|.|+|||+|.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            4678999999999999999999999999998     3456799999999999999999999863  45679999999999


Q ss_pred             CCCCceeEEEEEEcccC-CCcccEEEEccC
Q 021238           86 IWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (315)
                      .++|++||++.+++.++ ....+.|+.|..
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls  280 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAGVDGWFKLLS  280 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCCEEEEEECBC
T ss_pred             ccccccccccccchhhhccCCcccceeecc
Confidence            99999999999999986 344688999975

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.25  E-value=7.4e-11  Score=120.47  Aligned_cols=97  Identities=14%  Similarity=0.205  Sum_probs=80.0

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECC-------EEEEeecccC-CCCCeecce-EEEE-ecCC-CcEEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-------EKRFSSMVPG-SRYPMWGEE-FNFS-VDEL-PVQIIVTIY   81 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~-------~~~rT~vi~~-tlnP~w~e~-f~f~-v~~~-~~~L~~~V~   81 (315)
                      .+.|+|+|++|++|+..    .+||||+|.+..       .+++|+++++ ++||.|||+ |.|. +..+ -..|+|+||
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~  724 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVS  724 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEE
Confidence            47899999999999853    689999999832       5679999986 599999998 9998 7533 457999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           82 DWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      |++    ++|||++.+||..+..+ -++++|..+.|+
T Consensus       725 D~d----ddfiG~~~ipL~~L~~G-yR~vpL~~~~g~  756 (816)
T 3qr0_A          725 EEN----GKFIGHRVMPLDGIKPG-YRHVPLRNESNR  756 (816)
T ss_dssp             ETT----SCEEEEEEEESTTCCCE-EEEEEEECTTSC
T ss_pred             ecC----CCeeeEEEEEHHHcCCc-ceEEEEeCCCCC
Confidence            985    78999999999999765 467888765544

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.20  E-value=9.4e-11  Score=120.39  Aligned_cols=105  Identities=15%  Similarity=0.247  Sum_probs=83.1

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECC------EEEEeecccC-CCCCeecc-eEEEE-ecC-CCcEEEEEEEe
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS------EKRFSSMVPG-SRYPMWGE-EFNFS-VDE-LPVQIIVTIYD   82 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~------~~~rT~vi~~-tlnP~w~e-~f~f~-v~~-~~~~L~~~V~d   82 (315)
                      ...|+|+|++|++|+..    .+||||+|.+..      .+++|+++.+ ++||.||| +|.|. +.. .-..|+|+|||
T Consensus       724 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D  799 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFE  799 (885)
T ss_dssp             CEEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEc
Confidence            45899999999999853    689999999832      2469999986 59999999 69998 643 34579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCCCcccEEEEccCCCc------eEEEEEEee
Q 021238           83 WDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSG------QVCLHIKTI  126 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G------~i~~~l~~~  126 (315)
                      +|    ++|||++.+||..+..+ -++++|....|      .+.+.+.+.
T Consensus       800 ~d----ddfiG~~~lpL~~L~~G-yR~vpL~~~~g~~l~~atLfv~i~~~  844 (885)
T 3ohm_B          800 EG----GKFVGHRILPVSAIRSG-YHYVCLRNEANQPLCLPALLIYTEAS  844 (885)
T ss_dssp             TT----TEEEEEEEEETTTCCCE-EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CC----ccEEeeEEEEHHHcCCC-ceEEEecCCCCCccCceEEEEEEEEE
Confidence            87    78999999999999764 45788876544      455555544

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.20  E-value=1.3e-10  Score=119.05  Aligned_cols=98  Identities=17%  Similarity=0.256  Sum_probs=80.1

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-C---C--EEEEee-ccc-CCCCCeecc-eEEE-EecC-CCcEEEEEE
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-G---S--EKRFSS-MVP-GSRYPMWGE-EFNF-SVDE-LPVQIIVTI   80 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-~---~--~~~rT~-vi~-~tlnP~w~e-~f~f-~v~~-~~~~L~~~V   80 (315)
                      ..+.|.|+|++|++|+.    +.+||||+|.+ +   .  .+++|+ +++ +++||.||| +|.| .+.. .-..|+|.|
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V  751 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAV  751 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEE
Confidence            46799999999999985    47999999998 3   1  357999 887 469999999 6999 7753 345799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      ||+|    +++||++.+||..+..+ ..|++|....|+
T Consensus       752 ~D~d----~d~iG~~~ipl~~L~~G-~r~v~L~~~~g~  784 (799)
T 2zkm_X          752 MEEG----NKFLGHRIIPINALNSG-YHHLCLHSESNM  784 (799)
T ss_dssp             EETT----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             EEeC----CCccceEeeehhhcCCC-cEEEeccCCCCC
Confidence            9987    78999999999999654 578999765554

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.12  E-value=2e-09  Score=84.20  Aligned_cols=109  Identities=13%  Similarity=0.202  Sum_probs=83.0

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEE----EEe-ecccCCCCCeecceEEEEecCCCcEEEEEEEecCCC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~----~rT-~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~   86 (315)
                      -...|+|.+.++.--.-+......||||.|.++...    .+| ...++|..|.||++|...+.+ ++.|.+.|++... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC-
Confidence            345678887665432212223468999999996443    154 777789999999999999877 8899999996443 


Q ss_pred             CCCceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEee
Q 021238           87 WKSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTI  126 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~~~l~~~  126 (315)
                         +|++.+.+++.++       +...+.|+.|+| .|++++.+.+.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP-~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEe
Confidence               8999999999986       234578999998 89999998875

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.08  E-value=1.7e-09  Score=85.76  Aligned_cols=114  Identities=11%  Similarity=0.225  Sum_probs=87.8

Q ss_pred             CCCCceeEEEEEEEEeecCCCCC-CCCCCceEEEEEECCEE----EEe-ecccCCCCCeecceEEEEecCCCcEEEEEEE
Q 021238            8 PQTNSAYLIKLELLAAKNLIGAN-LNGTSDPYAIITCGSEK----RFS-SMVPGSRYPMWGEEFNFSVDELPVQIIVTIY   81 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d-~~g~sDPyv~v~l~~~~----~rT-~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~   81 (315)
                      .+++-...|+|.+.++.-.+-+. .....||||.|.++...    .+| ...++|..|.||++|...+.+ .+.|.|.|+
T Consensus         4 ~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vf   82 (138)
T 2enj_A            4 GSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVK   82 (138)
T ss_dssp             CCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEE
T ss_pred             cccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEE
Confidence            45566778899987765433222 13368999999996442    466 667789999999999998877 889999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEeec
Q 021238           82 DWDIIWKSTVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~~~l~~~~  127 (315)
                      +...    +|++.+.+++.++       +...+.|+.|+| .|++++.+.+..
T Consensus        83 h~a~----~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP-~Gkl~v~i~~~~  130 (138)
T 2enj_A           83 GKNV----DLISETTVELYSLAERCRKNNGKTEIWLELKP-QGRMLMNARYFL  130 (138)
T ss_dssp             CSSC----SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS-SCEEEEEEEECC
T ss_pred             cCCC----CeeeEEEEEHHHHHhhhccCCCceEEEEeccc-CcEEEEEEEEEE
Confidence            5432    8999999999986       234578999998 899999999853

>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A

Probab=96.56  E-value=0.052  Score=43.32  Aligned_cols=93  Identities=13%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCC---CCCCCCceEEEEeeec
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPP---LGSPDGRVRYKFASFW  268 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~---~~~~~~~~~~~F~sf~  268 (315)
                      .|++|+|.+.+||-.... ....+.||+.+|..++.+... +..++.|+++-.....+.++   --++....++.|.+= 
T Consensus        39 ~G~l~LTshRli~~d~~~-~~~s~~lpl~~v~~~e~~~~~-f~~s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~G-  115 (140)
T 2hth_B           39 AGTLLLSTHRLIWRDQKN-HECCMAILLSQIVFIEEQAAG-IGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEH-  115 (140)
T ss_dssp             CEEEEEESSEEEEEETTC-CSCCEEEEGGGEEEEEEECCT-TSSCCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTS-
T ss_pred             CCEEEEecCEEEEecCCC-CceEEEEEhHHeeeeeeeccc-cccCceEEEEecCCCccCCCCCcccccCcEEEEEEcCC-
Confidence            399999999999976544 468899999999999999875 34444444433222222111   112334455556553 


Q ss_pred             chHHHHHHHHHHHHhhhhh
Q 021238          269 NRNHALRQLQRTAKNYHTM  287 (315)
Q Consensus       269 ~rd~~~~~l~~~~~~~~~~  287 (315)
                      ..++.++.|.+.+++....
T Consensus       116 g~~eF~~~L~~al~~k~W~  134 (140)
T 2hth_B          116 GQIEFYRRLSEEMTQRRWE  134 (140)
T ss_dssp             CHHHHHHHHHHHHHHCCC-
T ss_pred             CChHHHHHHHHHHHHhhhc
Confidence            3488899998888876554

>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12

Probab=95.94  E-value=0.036  Score=44.53  Aligned_cols=85  Identities=16%  Similarity=0.188  Sum_probs=62.1

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchH
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN  271 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd  271 (315)
                      .|++|+|...++|-.........+.+|+.+|.+++.+... +..++.|+++-..+       -++....++.|.+=.. +
T Consensus        52 ~G~lyLTshRIIyv~~~~~~~~SfslPL~~v~~~e~~~~~-fg~s~Ki~l~~~p~-------~~~~~~~KLsFk~GGa-~  122 (145)
T 2cay_A           52 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSGF-LTRSPRLILFFKDP-------SSSTEFVQLSFRKSDG-V  122 (145)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECSS-SSSSCEEEEEESSC-------SSTTCCEEEEESSSCC-H
T ss_pred             ccEEEEEcCeEEEecCCCCcceEEEeEhHheeeeeEEcCc-cccCceEEEEecCC-------CCCceEEEEEEcCCCc-h
Confidence            3999999999999765543337899999999999998875 45566666543211       2334567888887666 8


Q ss_pred             HHHHHHHHHHHhhh
Q 021238          272 HALRQLQRTAKNYH  285 (315)
Q Consensus       272 ~~~~~l~~~~~~~~  285 (315)
                      +.++.|.+.+++..
T Consensus       123 eF~~~l~~al~~~~  136 (145)
T 2cay_A          123 LFSQATERALENIL  136 (145)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888887654

>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B

Probab=93.87  E-value=0.31  Score=36.83  Aligned_cols=94  Identities=17%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             cccceeecceeeeeeecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc--ccccCcEEEEEecCCCCCCC
Q 021238          173 PDEFVELSYSCVIERSFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFINPAITIILRMGAGGHGV  250 (315)
Q Consensus       173 ~~E~l~~~~~c~l~~~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~--~~~~~~i~i~~~~g~~~~~~  250 (315)
                      ++|.|.....-.|++.-   |.+|++..++-|-..-- .+-.+.+++.||...+-+..  +.+  -+.|+.+.|      
T Consensus         5 ~~~~ll~v~~v~yKK~d---GtL~l~~d~i~W~p~~~-~~~~vs~~~~~I~~qq~SP~~k~KV--qLqi~l~~~------   72 (108)
T 1pfj_A            5 SEEVLLIVKKVRQKKQD---GALYLMAERIAWAPEGK-DRFTISHMYADIKCQKISPEGKAKI--QLQLVLHAG------   72 (108)
T ss_dssp             SCCEEEEESCCBCSSCB---CEEEEETTEEEEECSSS-SSCSEEEETTTCCCEEECCSSSSSC--EEEEECSSS------
T ss_pred             chheeEEehhheeecCC---ceEEEEcceEEEccCCC-CCceEEEehhhhhcceeCCCCCccE--EEEEEEeCC------
Confidence            45677776666666543   99999999999887543 36668889999998654432  221  578888654      


Q ss_pred             CCCCCCCCceEEEEeee----cchHHHHHHHHHHHHhhh
Q 021238          251 PPLGSPDGRVRYKFASF----WNRNHALRQLQRTAKNYH  285 (315)
Q Consensus       251 ~~~~~~~~~~~~~F~sf----~~rd~~~~~l~~~~~~~~  285 (315)
                             +...|.|++=    -.||..=++|.+++.+.+
T Consensus        73 -------~~~~F~Ftn~~~a~~erd~VKd~L~~~l~~~k  104 (108)
T 1pfj_A           73 -------DTTNFHFSNESTAVKERDAVKDLLQQLLPKFK  104 (108)
T ss_dssp             -------CEEEEECCCSSCTTHHHHHHHHHHHHHHHHHS
T ss_pred             -------CceEEEEcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence                   5678888884    346666777777776654

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=92.31  E-value=2.3  Score=36.25  Aligned_cols=56  Identities=11%  Similarity=0.067  Sum_probs=41.2

Q ss_pred             EEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecCCC----CCCceeEEEEEEcccC
Q 021238           47 KRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWDII----WKSTVLGSVIVTVESE  102 (315)
Q Consensus        47 ~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d~~----~~dd~iG~~~i~l~~l  102 (315)
                      ..+|.|...+.+|.|+|++.+.+..   ...-|.|++++...-    ..+..+|-+++||-+-
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~~  140 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMRY  140 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBCT
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcccC
Confidence            3478888889999999999999864   355699999875421    1235788888887654

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=91.78  E-value=1  Score=46.69  Aligned_cols=87  Identities=13%  Similarity=0.132  Sum_probs=60.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCE----EEEeecccCCCCCeecceEEEEec----CCCcEEEEEEEe
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSE----KRFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYD   82 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~----~~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d   82 (315)
                      ...+.|+|.++.++...   ..++-||.+.+  +..    ...|..+.-..+|.|||.+.|++.    +....|.|.||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            45788999999998653   35677888766  433    234555544678999999999874    357789999999


Q ss_pred             cCCC--C----------CCceeEEEEEEcccC
Q 021238           83 WDII--W----------KSTVLGSVIVTVESE  102 (315)
Q Consensus        83 ~d~~--~----------~dd~iG~~~i~l~~l  102 (315)
                      ....  +          .+..+|.+.++|-+-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~  324 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDY  324 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCT
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECC
Confidence            7432  1          245899999999763

>1zsq_A Myotubularin-related protein 2; protein-phospholipid complex, hydrolase; HET: PIB; 1.82A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1zvr_A*

Probab=88.27  E-value=4.3  Score=39.27  Aligned_cols=73  Identities=16%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCcccceeecceeeee-e--ecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc--ccc-cC-cEEEEEec
Q 021238          171 LLPDEFVELSYSCVIE-R--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFI-NP-AITIILRM  243 (315)
Q Consensus       171 lp~~E~l~~~~~c~l~-~--~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~--~~~-~~-~i~i~~~~  243 (315)
                      +-++|.++..-..+.. .  .-.+.|.+|+|..++.|.+.....+..+-||+.-|..|+|...  ... .+ .|.|..++
T Consensus         9 lLpGE~i~~~~~~V~~~~~~~~~~~GtL~lTn~rLiF~~~~~~~~~~~~iPL~~I~~vek~~~~s~~~~~~~~l~I~CKD   88 (528)
T 1zsq_A            9 LLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKD   88 (528)
T ss_dssp             CCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETT
T ss_pred             cCCCCeEEEecCCEEEeCCCCCceeEEEEEECCEEEEEccCCCccEEEEeeccceEEEEEcCCCCcCCCCCceEEEEccC
Confidence            4456666544222221 1  1256799999999999999754445678999999999999652  111 22 58888864

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=87.92  E-value=2.6  Score=44.31  Aligned_cols=88  Identities=15%  Similarity=0.199  Sum_probs=59.7

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CC----EEEEeecccCCCCCeecceEEEEec----CCCcEEEEEEEe
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GS----EKRFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYD   82 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~----~~~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d   82 (315)
                      ...+.|+|+++.++.. +.....+-||.+.+  +.    ...+|..+. ..+|.|||...|++.    +....|.|.||+
T Consensus       354 ~~~f~v~i~~~~~~n~-~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNV-NIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCC-CCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCC-CccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            3467899999988753 33344677888877  32    223444333 457889999999874    357789999998


Q ss_pred             cCCC----CCCceeEEEEEEcccC
Q 021238           83 WDII----WKSTVLGSVIVTVESE  102 (315)
Q Consensus        83 ~d~~----~~dd~iG~~~i~l~~l  102 (315)
                      ....    ..+..||.+.++|-+-
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~  455 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDY  455 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCT
T ss_pred             ecCccCcccccceeEEeeeeeEcc
Confidence            7642    1245899999999774

>2yf0_A Myotubularin-related protein 6; hydrolase; 2.65A {Homo sapiens}

Probab=87.04  E-value=2.2  Score=41.11  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             cccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeec
Q 021238          189 FLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFW  268 (315)
Q Consensus       189 ~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~  268 (315)
                      -++.|.+|+|..++.|.+..   ...+-||+.-|..|+|.....-...|.|..++-             ...+|.|..-.
T Consensus        23 ~~~~GtL~lTn~~LiF~~~~---~~e~wi~~~~I~~VeK~~~~~~~~~l~I~CKDf-------------r~~~f~f~~~~   86 (512)
T 2yf0_A           23 KSLTGTLYLTATHLLFIDSH---QKETWILHHHIASVEKLALTTSGCPLVIQCKNF-------------RTVHFIVPRER   86 (512)
T ss_dssp             -CCEEEEEECSSEEEEEESS---SCEEEEEGGGEEEEEECCCBTTBEEEEEEETTS-------------CEEEEEESCHH
T ss_pred             CceeEEEEEECCEEEEeCCC---CCceEecccceeEEEEecCCCCCceEEEEecCC-------------cEEEEEeCChH
Confidence            35679999999999999943   334689999999999976432223588888653             33455565544


Q ss_pred             chHHHHHHHHHH
Q 021238          269 NRNHALRQLQRT  280 (315)
Q Consensus       269 ~rd~~~~~l~~~  280 (315)
                      .+.+.|..|.++
T Consensus        87 ~~~~v~~sL~~~   98 (512)
T 2yf0_A           87 DCHDIYNSLLQL   98 (512)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh
Confidence            444445555443

>1lw3_A Myotubularin-related protein 2; protein-phosphate complex, hydrolase; 2.30A {Homo sapiens} SCOP: b.55.1.8 c.45.1.3 PDB: 1m7r_A

Probab=86.34  E-value=6.1  Score=39.13  Aligned_cols=98  Identities=15%  Similarity=0.176  Sum_probs=59.9

Q ss_pred             cCCcccceeecceee-eee--ecccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecc--ccc-cC-cEEEEEe
Q 021238          170 NLLPDEFVELSYSCV-IER--SFLYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQH--AFI-NP-AITIILR  242 (315)
Q Consensus       170 ~lp~~E~l~~~~~c~-l~~--~~~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~--~~~-~~-~i~i~~~  242 (315)
                      .+-++|.++..-..+ +..  .-.+.|.+|+|..++.|.+........+-||+.-|..|+|...  ... .+ .|.|..+
T Consensus        80 ~LLPGE~v~~~~~~V~~~~p~~~~~~GtL~lTnyrLiF~~~~~~~~~~~~IPL~~I~~Iekv~g~s~~g~~~~~l~I~CK  159 (657)
T 1lw3_A           80 PLLPGENIKDMAKDVTYICPFTGAVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCK  159 (657)
T ss_dssp             CCCTTCCEEEEEEEEEEEETTTEEEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEET
T ss_pred             ccCCCeeEEEEeCCEEEecCCCCceeEEEEEECCEEEEEecCCCcceEEEecccceEEEEecCCCcccCCCCceEEEEec
Confidence            344566666433222 211  1246799999999999998754445678999999999999642  111 22 5888886


Q ss_pred             cCCCCCCCCCCCCCCCceEEEEeee-cchHHHHHHHHHH
Q 021238          243 MGAGGHGVPPLGSPDGRVRYKFASF-WNRNHALRQLQRT  280 (315)
Q Consensus       243 ~g~~~~~~~~~~~~~~~~~~~F~sf-~~rd~~~~~l~~~  280 (315)
                      +.             .-.+|.|..- .++.+.|..|.++
T Consensus       160 Df-------------R~~~f~f~~~~~~~~~v~~~L~~~  185 (657)
T 1lw3_A          160 DI-------------RNLRFAHKPEGRTRRSIFENLMKY  185 (657)
T ss_dssp             TT-------------EEEEEECCGGGCCHHHHHHHHHHH
T ss_pred             CC-------------cEEEEEeCCccchHHHHHHHHHHH
Confidence            43             2344555433 2244555555554

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=80.39  E-value=1.5  Score=46.25  Aligned_cols=69  Identities=17%  Similarity=0.282  Sum_probs=48.2

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEE--CCEE----EEeecccCCCCCeecceEEEEec----CCCcEEEEEEEe
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITC--GSEK----RFSSMVPGSRYPMWGEEFNFSVD----ELPVQIIVTIYD   82 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~~~~----~rT~vi~~tlnP~w~e~f~f~v~----~~~~~L~~~V~d   82 (315)
                      ...+.|+|..+.++...   ..++-||.+.+  +...    ..|..+.-..+|.|||.+.|++.    +....|.|.||+
T Consensus       352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred             CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence            45788999999888643   34667776554  4333    24544444678999999998874    347789999999


Q ss_pred             cC
Q 021238           83 WD   84 (315)
Q Consensus        83 ~d   84 (315)
                      ..
T Consensus       429 ~~  430 (1092)
T 2y3a_A          429 VL  430 (1092)
T ss_dssp             C-
T ss_pred             ec
Confidence            63

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	1e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-16
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	2e-14
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	7e-13
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	2e-12
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	3e-12
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-12
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-11
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	7e-11
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	1e-10
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	4e-10
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-10
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-09
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-09
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-09
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	5e-09
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-08

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (177), Expect = 1e-16
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 6/118 (5%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           ++++++L A +L+ A+ +G SDP+ ++  G+++  +  V  +  P W + F F + ++  
Sbjct: 7   ILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHD 66

Query: 75  QIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI 126
            + VT++D D       LG V + + S        Y L +        G + L +  I
Sbjct: 67  VLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI 124

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 72.9 bits (178), Expect = 2e-16
 Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 7/116 (6%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPV 74
           +++ L++AK L  A+     DPY  +TC ++ + S++       P W E F F+V E   
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 75  QIIVTIYDWDIIWKSTVLGSVIV---TVESEGQTGAVWYTL---DSPSGQVCLHIK 124
           ++   I+D D+  +   +G   +    V  EG      Y +   +   G++ + + 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALS 127

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 8/110 (7%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSV 69
           ++ + +  AKNL+  + NG SDPY  +          K+ +  +  S  P W E F F +
Sbjct: 16  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 75

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPS 116
              +   ++ V I+DWD+  ++  +GS+   +   +      W+ L S  
Sbjct: 76  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQE 125

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 7e-13
 Identities = 23/122 (18%), Positives = 48/122 (39%), Gaps = 11/122 (9%)

Query: 12  SAYLIKLELLAAKNL---IGANLNGTSDPYAIITCG---SEKRFSSMVPGSRYPMWGEEF 65
           S++   + +L A  +      ++  T DPY  +        ++ +        P+W E F
Sbjct: 1   SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60

Query: 66  NFSVDELPVQ-IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSPSGQVCLH 122
            F +D      + +T+ D + +     LG+   TV S   G+   V +   +   ++ L 
Sbjct: 61  EFILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVPFIF-NQVTEMVLE 118

Query: 123 IK 124
           + 
Sbjct: 119 MS 120

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 11/122 (9%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANLNGTSDPYA---IITCGSEKRFSSMVPGSR 57
                 D Q N    + + ++ A  L   ++ GTSDPY    ++    +K  + +   + 
Sbjct: 24  QYSLDYDFQNNQ---LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTL 80

Query: 58  YPMWGEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTL 112
            P++ E+F F V    +    +++ +YD+D   K  ++G   V + +   G     W  L
Sbjct: 81  NPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140

Query: 113 DS 114
            S
Sbjct: 141 QS 142

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.3 bits (148), Expect = 3e-12
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 12/123 (9%)

Query: 7   DPQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMW 61
              TN+   + + +L A++L  ++++G SDPY  +          K+ + +   +   ++
Sbjct: 11  QSTTNT---LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVF 67

Query: 62  GEEFNFSVDELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWY-TLDSPSG 117
            E F F +    ++   +   + D +   ++ V+G +++   +EG  G  W    D P  
Sbjct: 68  NELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRR 127

Query: 118 QVC 120
           Q+ 
Sbjct: 128 QIA 130

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.8 bits (144), Expect = 6e-12
 Identities = 15/102 (14%), Positives = 31/102 (30%), Gaps = 10/102 (9%)

Query: 31  LNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDI 85
            +  S P+  +           +       + YP W   F+  + E  V I + +     
Sbjct: 20  EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYEGRV-IQIVLMRAAE 78

Query: 86  IWKSTV---LGSVIVTVESEGQTGAVWYTLDSPSGQVCLHIK 124
              S V   +  +    +        W  L  P  +V + ++
Sbjct: 79  DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ-PQAKVLMCVQ 119

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 1e-11
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 12/109 (11%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIIT-----CGSEKRFSSMVPGSRYPMWGEEFNFSVD 70
           + + +L AK+L         +PY  I          KR +  V  +  P W + F +S  
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 71  ELP----VQIIVTIYDWDIIWKS--TVLGSVIVTVES-EGQTGAVWYTL 112
                    + +T++D   + +     LG +++ +E+        WY L
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPHWYKL 124

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.1 bits (137), Expect = 7e-11
 Identities = 20/112 (17%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 16  IKLELLAAKNL--IGANLNGTSDPYAIITCG------SEKRFSSMVPGSRYPMWGEEFNF 67
           +++ +++ + L  +  N N   DP  I+           ++ + +      P W  EF F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 68  SV-DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ 118
            V       +   + D+D   K+  +G   +      + G     L S +G 
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN-SLKQGYRHVHLLSKNGD 116

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.0 bits (134), Expect = 1e-10
 Identities = 19/114 (16%), Positives = 49/114 (42%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSV- 69
           + + ++   +L   + NG SDP+  +          K  + +   +  P + EEF + + 
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYTL-DSPSGQVC 120
             D     + ++++D+DI   +  +G   + + ++G+    WY    +   ++ 
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIE 130

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.3 bits (132), Expect = 4e-10
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 20/121 (16%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITC--------------GSEKRFSSMVPGSRYPMW 61
           + + +L A+NL+  + NG SDP+  +                   KR +  V  S  P W
Sbjct: 20  LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEW 79

Query: 62  GEEFNFSV----DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES--EGQTGAVWYTLDSP 115
            +   +        +   + VT++D+D    +  LG V++ + S         WY L   
Sbjct: 80  NQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ 139

Query: 116 S 116
           +
Sbjct: 140 T 140

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 4e-10
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 11/113 (9%)

Query: 15  LIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPV 74
           L+ + +  AK           + Y  +   + K  +  V GS  P W ++F F ++ L +
Sbjct: 3   LLCVGVKKAKFDGA---QEKFNTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDL 58

Query: 75  QIIVTIYDWDIIWK---STVLGSVIVTVESEGQTGAVWYTLDSPS----GQVC 120
            + V +++  +IW     TV   +    +S  +    W TLDS +     ++C
Sbjct: 59  GLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEIC 111

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-09
 Identities = 13/103 (12%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQ 75
           +++ +++AK            PY  +T   + + +     +  P W +     V     +
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSK 66

Query: 76  IIVTIYDWDIIWKSTVLGSVIVTVES-----EGQTGAVWYTLD 113
           +   ++    +    +LG+  + +         +   V  TL 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ 109

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 31/119 (26%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 12  SAYLIKLELLAAKNLIGANLNGTSDPYAIITCGS-----EKRFSSMVPGSRYPMWGEEFN 66
           +A L+ + ++ A NL   +L G SDPY   +  S     +KR +S+   +  P + E   
Sbjct: 18  TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALV 77

Query: 67  FSV---DELPVQIIVTIYDWDIIWKSTVLGSVIVTVESEGQTG-AVWYTL-DSPSGQVC 120
           F V       V + + + D+D I  + V+G   V  E+    G   W  +  +P   V 
Sbjct: 78  FDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVE 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.9 bits (126), Expect = 3e-09
 Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 9/114 (7%)

Query: 16  IKLELLAAKNLIGANLNGTSDPYAIITCGSEKRF-----SSMVPGSRYPMWGEEFNFSVD 70
           + + +L AKNL   ++ G SDPY  I      +      +++   +  P + E F+F V 
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 71  ELPVQ---IIVTIYDWDIIWKSTVLGSVIVTVESEGQTGAVWYT-LDSPSGQVC 120
              +Q   ++VT+ D+D I K+  +G V V   S G     W   L +P   + 
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIA 140

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 51.8 bits (123), Expect = 5e-09
 Identities = 25/140 (17%), Positives = 47/140 (33%), Gaps = 26/140 (18%)

Query: 1   MVQFKGDPQTNSAYLIKLELLAAKNLIGANL-----------NGTSDPYAIITCGSEKRF 49
           MV F G        L+K+++  A +L                    DPY  +     +  
Sbjct: 1   MVVFNG--------LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIG 52

Query: 50  SSMV-PGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVLGSVIVTVE----SEGQ 104
            +     +  P W +EF   V     +I + ++    I     + +  +  E    +  +
Sbjct: 53  QTATKQKTNSPAWHDEFVTDVCN-GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSR 111

Query: 105 TGAVWYTLDSPSGQVCLHIK 124
               W  L+ P G+V + I 
Sbjct: 112 HFEDWIDLE-PEGKVYVIID 130

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 9/111 (8%)

Query: 16  IKLELLAAKNLIGANLNG-TSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-- 69
             + +  A+ L   +    TSDPY  +T       K  + ++  +  P + E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 70  --DELPVQIIVTIYDWDIIWKSTVLGSVIVTVES-EGQTGAVWYTLDSPSG 117
                 + +  TI  +D   +  ++G V++ +   E   G +    +  SG
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.9
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.88
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.84
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.83
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.82
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.8
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.79
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.79
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.78
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.77
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.75
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.74
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.73
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.72
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.71
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.71
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.65
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.63
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.43
d2rnrb1	108	TFIIH basal transcription factor complex p62 subun	95.74
d1t77a2	110	Lipopolysaccharide-responsive and beige-like ancho	95.25
d1zsqa1	125	Myotubularin-related protein 2, N-terminal domain	95.22
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.41
d2hthb1	129	Vacuolar protein sorting protein 36, VPS36 {Human	93.68
d2caya1	130	Vacuolar protein sorting protein 36, VPS36 {Baker'	91.87

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.1e-23  Score=167.01  Aligned_cols=116  Identities=23%  Similarity=0.434  Sum_probs=105.6

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCc
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKST   90 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd   90 (315)
                      .+.|.|+|+|++|++|+++|..|.+||||++.++..+++|++++++.||.|+|+|.|.+.++...|.|+|||++..++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            46799999999999999999999999999999999999999999999999999999999887789999999999999999


Q ss_pred             eeEEEEEEcccCCCcccEEEEccC------CCceEEEEEEee
Q 021238           91 VLGSVIVTVESEGQTGAVWYTLDS------PSGQVCLHIKTI  126 (315)
Q Consensus        91 ~iG~~~i~l~~l~~~~~~w~~L~~------~~G~i~~~l~~~  126 (315)
                      +||++.++|.++......|+.|..      ..|++++++.+.
T Consensus        83 ~lG~~~i~l~~l~~~~~~~~~l~~~~~~~~~~G~i~l~~~~i  124 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKGVIYLEMDLI  124 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCCceEEEccccCCCCceeEEEEEEEEEE
Confidence            999999999999777789998863      248888887754

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=2.5e-22  Score=161.19  Aligned_cols=121  Identities=21%  Similarity=0.375  Sum_probs=105.7

Q ss_pred             CCCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeeccc-CCCCCeecceEEEEecCCCcEEEEEEEecCCC
Q 021238            8 PQTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVP-GSRYPMWGEEFNFSVDELPVQIIVTIYDWDII   86 (315)
Q Consensus         8 ~~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~-~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~   86 (315)
                      .++.+.|.|+|+|++|++|+++|..|++||||+++++....+|++++ +++||.|||+|.|.+.+....|.|+|||+|..
T Consensus         4 ~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~   83 (136)
T d1wfja_           4 GSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSC
T ss_pred             CCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCC
Confidence            45677999999999999999999999999999999998888998887 58999999999999987777899999999999


Q ss_pred             CCCceeEEEEEEcccC---CCcccEEEEccCC---CceEEEEEEeecC
Q 021238           87 WKSTVLGSVIVTVESE---GQTGAVWYTLDSP---SGQVCLHIKTIKL  128 (315)
Q Consensus        87 ~~dd~iG~~~i~l~~l---~~~~~~w~~L~~~---~G~i~~~l~~~~~  128 (315)
                      ++|++||++.|+|.++   +.....|+.|...   .|++++.+++.+.
T Consensus        84 ~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~  131 (136)
T d1wfja_          84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPS  131 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEEC
T ss_pred             CCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeC
Confidence            9999999999999986   3335679988532   4888888888754

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.84  E-value=9.3e-21  Score=152.06  Aligned_cols=114  Identities=18%  Similarity=0.250  Sum_probs=99.1

Q ss_pred             eeEEEEEEEEeecCCCCC-----------CCCCCceEEEEEECCEE-EEeecccCCCCCeecceEEEEecCCCcEEEEEE
Q 021238           13 AYLIKLELLAAKNLIGAN-----------LNGTSDPYAIITCGSEK-RFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTI   80 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d-----------~~g~sDPyv~v~l~~~~-~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V   80 (315)
                      .|.|+|+|++|++|++++           ..+.+||||++.++... .+|+++.++.||.|||.|.|.+.+ ...|.|+|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i~V   83 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIELAV   83 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEEEE
Confidence            689999999999999864           46678999999998765 489999999999999999999965 56899999


Q ss_pred             EecCCCCCCceeEEEEEEcccC----CCcccEEEEccCCCceEEEEEEeecC
Q 021238           81 YDWDIIWKSTVLGSVIVTVESE----GQTGAVWYTLDSPSGQVCLHIKTIKL  128 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l----~~~~~~w~~L~~~~G~i~~~l~~~~~  128 (315)
                      ||++..++|++||.+.++|.++    ....+.|++|++ .|++++.+.+.+.
T Consensus        84 ~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p-~G~v~l~v~~~~~  134 (136)
T d1gmia_          84 FHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP-EGKVYVIIDLSGS  134 (136)
T ss_dssp             EECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS-SCEEEEEEEEEEE
T ss_pred             EEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC-CcEEEEEEEEEeC
Confidence            9999999999999999999986    233568999987 7999999887653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.6e-20  Score=149.80  Aligned_cols=103  Identities=27%  Similarity=0.483  Sum_probs=91.1

Q ss_pred             ceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecCC--CcEEEEEEEecC
Q 021238           12 SAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDEL--PVQIIVTIYDWD   84 (315)
Q Consensus        12 ~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~~--~~~L~~~V~d~d   84 (315)
                      ..+.|.|+|++|+||+.+|..|.+||||++++     +..+++|+++++|.||.|||+|.|.+...  ...|.|+|||+|
T Consensus        13 ~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d   92 (132)
T d1a25a_          13 DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWD   92 (132)
T ss_dssp             SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECC
T ss_pred             cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecC
Confidence            35789999999999999999999999999998     45567999999999999999999998642  457999999999


Q ss_pred             CCCCCceeEEEEEEcccC-CCcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESE-GQTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l-~~~~~~w~~L~~  114 (315)
                      ..++|++||++.++|.++ ....+.|++|.+
T Consensus        93 ~~~~d~~iG~~~i~l~~l~~~~~~~W~~L~~  123 (132)
T d1a25a_          93 LTSRNDFMGSLSFGISELQKAGVDGWFKLLS  123 (132)
T ss_dssp             SSSCCEEEEEEEEEHHHHTTCCEEEEEECBC
T ss_pred             CCCCCcEeEEEEEeHHHcCCCCCCeEEECCC
Confidence            999999999999999996 345678999975

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.7e-20  Score=147.07  Aligned_cols=113  Identities=19%  Similarity=0.333  Sum_probs=94.4

Q ss_pred             eeEEEEEEEEeecCCCC---CCCCCCceEEEEEECC---EEEEeecccCCCCCeecceEEEEecCC-CcEEEEEEEecCC
Q 021238           13 AYLIKLELLAAKNLIGA---NLNGTSDPYAIITCGS---EKRFSSMVPGSRYPMWGEEFNFSVDEL-PVQIIVTIYDWDI   85 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~---d~~g~sDPyv~v~l~~---~~~rT~vi~~tlnP~w~e~f~f~v~~~-~~~L~~~V~d~d~   85 (315)
                      .+.|+|+|++|+||+..   |..|.+||||++.++.   ...+|+++.++.||.|||+|.|.+.+. ...|.|+|||+|.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            47899999999999874   4568999999999953   567999999999999999999999754 5679999999986


Q ss_pred             CCCCceeEEEEEEcccC--CCcccEEEEccCC-CceEEEEEEee
Q 021238           86 IWKSTVLGSVIVTVESE--GQTGAVWYTLDSP-SGQVCLHIKTI  126 (315)
Q Consensus        86 ~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~-~G~i~~~l~~~  126 (315)
                      . +|++||++.++|.++  +...+.|++|.+. .|++++++.+.
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEE
Confidence            5 689999999999997  4566789999763 46666666654

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4e-19  Score=141.88  Aligned_cols=89  Identities=11%  Similarity=0.231  Sum_probs=81.9

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i   92 (315)
                      .+.|.|+|++|++++..+..+++||||++.++...++|++++++.||.|||.|.|.+.+ ...|.|+|||+|..++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceE
Confidence            47899999999999998889999999999999999999999999999999999999876 56899999999999999999


Q ss_pred             EEEEEEcccC
Q 021238           93 GSVIVTVESE  102 (315)
Q Consensus        93 G~~~i~l~~l  102 (315)
                      |++.++|.++
T Consensus        84 G~~~i~L~~l   93 (133)
T d2nq3a1          84 GTAALDIYET   93 (133)
T ss_dssp             EEEEEEHHHH
T ss_pred             EEEEEEHHHh
Confidence            9999999875

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.6e-19  Score=143.74  Aligned_cols=104  Identities=23%  Similarity=0.413  Sum_probs=91.3

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEecC
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDWD   84 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~d   84 (315)
                      ...+.|.|+|++|+||++++..|.+||||++++   +....+|++++++.||.|||+|.|.+..   ....|.|+|||++
T Consensus        31 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d  110 (143)
T d1rsya_          31 FQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFD  110 (143)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECC
T ss_pred             CCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcC
Confidence            345689999999999999999999999999998   4556799999999999999999998753   3567999999999


Q ss_pred             CCCCCceeEEEEEEcccC--CCcccEEEEccC
Q 021238           85 IIWKSTVLGSVIVTVESE--GQTGAVWYTLDS  114 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~  114 (315)
                      ..+++++||++.++|.++  +.....|++|+.
T Consensus       111 ~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         111 RFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             SSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            999999999999999997  455678999964

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=4.5e-20  Score=148.72  Aligned_cols=104  Identities=25%  Similarity=0.421  Sum_probs=89.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECC--------------EEEEeecccCCCCCeecceEEEEecC----CCc
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGS--------------EKRFSSMVPGSRYPMWGEEFNFSVDE----LPV   74 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~--------------~~~rT~vi~~tlnP~w~e~f~f~v~~----~~~   74 (315)
                      .+.|.|+|++|+||+++|..|.+||||++++..              .+.||++++++.||.|||.|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            578999999999999999999999999999821              12479999999999999999997432    356


Q ss_pred             EEEEEEEecCCCCCCceeEEEEEEcccC--CCcccEEEEccCCC
Q 021238           75 QIIVTIYDWDIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSPS  116 (315)
Q Consensus        75 ~L~~~V~d~d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~~  116 (315)
                      .|.|+|||+|..+++++||++.++|.++  ......|++|.++.
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~~  140 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCcC
Confidence            7999999999999999999999999997  45567899998754

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.9e-19  Score=141.99  Aligned_cols=106  Identities=22%  Similarity=0.339  Sum_probs=90.5

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE---CCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEe
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYD   82 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d   82 (315)
                      +.+..+.|.|+|++|+||+.++..|.+||||++++   .....+|++++++.||.|||+|.|.+..   ....|.|+|||
T Consensus        13 y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d   92 (130)
T d1dqva1          13 YLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYD   92 (130)
T ss_dssp             CCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEE
T ss_pred             EECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEE
Confidence            45567899999999999999999999999999998   3456799999999999999999999853   24569999999


Q ss_pred             cCCCCCCceeEEEEEEccc-C---CCcccEEEEccC
Q 021238           83 WDIIWKSTVLGSVIVTVES-E---GQTGAVWYTLDS  114 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~-l---~~~~~~w~~L~~  114 (315)
                      ++.++++++||++.+++.. +   ......|++|.+
T Consensus        93 ~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          93 FDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             CCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             cCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            9999999999999998643 2   334557999975

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.3e-18  Score=137.83  Aligned_cols=98  Identities=22%  Similarity=0.398  Sum_probs=85.5

Q ss_pred             eeEEEEEEEEeecCCCCCCCCCCceEEEEEECCEEEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCCcee
Q 021238           13 AYLIKLELLAAKNLIGANLNGTSDPYAIITCGSEKRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKSTVL   92 (315)
Q Consensus        13 ~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~dd~i   92 (315)
                      ++.|.|+|.+|++|.++|   ++||||++.+++.+.+|.++++ .||.|||+|.|.+.++...|.|+|||++.. +|++|
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k~-~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~l   75 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVRG-SQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMV   75 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEES-SSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEE
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEecC-CCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcce
Confidence            368999999999999976   6899999999999999988864 599999999999988888999999999876 68999


Q ss_pred             EEEEEEcccCC----CcccEEEEccCC
Q 021238           93 GSVIVTVESEG----QTGAVWYTLDSP  115 (315)
Q Consensus        93 G~~~i~l~~l~----~~~~~w~~L~~~  115 (315)
                      |++.|+|.++.    .....|++|..+
T Consensus        76 G~~~I~L~~l~~~~~~~~~~W~~L~~~  102 (128)
T d2cjta1          76 GTVWIPLRTIRQSNEEGPGEWLTLDSQ  102 (128)
T ss_dssp             EEEEEEGGGSCBCSSCCCCEEEECBC-
T ss_pred             EEEEEEehhhccCCCCCCCeeEECCcc
Confidence            99999999972    345689999753

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.77  E-value=3.4e-18  Score=135.92  Aligned_cols=104  Identities=21%  Similarity=0.303  Sum_probs=84.0

Q ss_pred             eEEEEEEEEeecCCC--CCCCCCCceEEEEEE-----CCEEEEeecccC-CCCCeecceEEEEecC-CCcEEEEEEEecC
Q 021238           14 YLIKLELLAAKNLIG--ANLNGTSDPYAIITC-----GSEKRFSSMVPG-SRYPMWGEEFNFSVDE-LPVQIIVTIYDWD   84 (315)
Q Consensus        14 g~L~V~Ii~A~~L~~--~d~~g~sDPyv~v~l-----~~~~~rT~vi~~-tlnP~w~e~f~f~v~~-~~~~L~~~V~d~d   84 (315)
                      ..|+|+|++|++|+.  .+.+|++||||++++     +....+|+++++ ++||.|||+|.|.+.. ....|+|+|||+|
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            479999999999964  456788999999998     356779998875 5799999999998864 3557999999999


Q ss_pred             CCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           85 IIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        85 ~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      ..++|++||++.++|.++..+ ..|++|..+.|+
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g-~~~~~L~~~~g~  116 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG-YRHVHLLSKNGD  116 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE-EEEEEEECTTSC
T ss_pred             CCCCCcEEEEEEEEEeccCCC-CEEEECCCCCcC
Confidence            999999999999999998654 579999765554

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.5e-18  Score=134.03  Aligned_cols=104  Identities=23%  Similarity=0.418  Sum_probs=84.0

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEE-ecC---CCcEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFS-VDE---LPVQIIVTI   80 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~-v~~---~~~~L~~~V   80 (315)
                      .+..+.|.|+|++|+||++.+..+.+||||++.+     ....++|++++++.||.|||+|.|. +..   ....|.|.|
T Consensus        10 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v   89 (125)
T d2bwqa1          10 DKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITL   89 (125)
T ss_dssp             ETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEE
T ss_pred             ECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEE
Confidence            4556799999999999999999999999999998     2445799999999999999999997 332   245699999


Q ss_pred             EecCCCC--CCceeEEEEEEcccCC-CcccEEEEcc
Q 021238           81 YDWDIIW--KSTVLGSVIVTVESEG-QTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~--~dd~iG~~~i~l~~l~-~~~~~w~~L~  113 (315)
                      ||++..+  .+++||++.++|+++. ....+||+|+
T Consensus        90 ~d~~~~~~~~~~~iG~~~i~l~~~~~~~~~~Wy~L~  125 (125)
T d2bwqa1          90 WDQARVREEESEFLGEILIELETALLDDEPHWYKLQ  125 (125)
T ss_dssp             EEC-------CEEEEEEEEEGGGCCCSSCEEEEECC
T ss_pred             EECCCCCCCCCeeEEEEEEEchhcCCCCCCEEEeCc
Confidence            9999764  4569999999999974 4456899984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1e-17  Score=134.27  Aligned_cols=102  Identities=16%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEEec
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIYDW   83 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~d~   83 (315)
                      ...+.|.|+|++|++|.   ..|.+||||++.+.    ....+|++++++.||.|||+|.|.+..   ....|.|+|||+
T Consensus        23 ~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~   99 (138)
T d1wfma_          23 CQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTC   99 (138)
T ss_dssp             TTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEEC
T ss_pred             CCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeee
Confidence            35678999999999994   35789999999992    234689999999999999999999853   256799999999


Q ss_pred             CCCCCCceeEEEEEEcccC--CCcccEEEEccCC
Q 021238           84 DIIWKSTVLGSVIVTVESE--GQTGAVWYTLDSP  115 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l--~~~~~~w~~L~~~  115 (315)
                      +..+++++||++.|+|.++  ......|++|.++
T Consensus       100 ~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_         100 DRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             CSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             cccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            9999999999999999987  4556889999864

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=2.2e-18  Score=137.80  Aligned_cols=106  Identities=17%  Similarity=0.328  Sum_probs=90.2

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE-----CCEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC-----GSEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l-----~~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|.|+|++|+||+..+..+.+||||++++     ...+++|++++++.||.|||+|.|.+..   ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v   89 (137)
T d2cm5a1          10 YSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISV   89 (137)
T ss_dssp             EETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEE
T ss_pred             EECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEe
Confidence            34567899999999999999999999999999998     2345699999999999999999999853   245799999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEccC
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLDS  114 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~  114 (315)
                      ||++..+++++||++.+++..+......|++|.+
T Consensus        90 ~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~  123 (137)
T d2cm5a1          90 WDYDIGKSNDYIGGCQLGISAKGERLKHWYECLK  123 (137)
T ss_dssp             EECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred             eeCCCCCCCCEEEEEEeCccccCcchhhhhhHhh
Confidence            9999999999999999999876555566777654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.1e-18  Score=137.29  Aligned_cols=105  Identities=18%  Similarity=0.350  Sum_probs=81.6

Q ss_pred             CCCceeEEEEEEEEeecCCCCCCCCCCceEEEEEE--C---CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEE
Q 021238            9 QTNSAYLIKLELLAAKNLIGANLNGTSDPYAIITC--G---SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTI   80 (315)
Q Consensus         9 ~~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l--~---~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V   80 (315)
                      +.+..+.|.|+|++|+||++++..+.+||||++.+  +   ..+.+|++++++.||.|||+|.|.+..   ....|.|.|
T Consensus        10 Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v   89 (138)
T d1w15a_          10 YQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLV   89 (138)
T ss_dssp             EETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEE
T ss_pred             EcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEE
Confidence            34567789999999999999999999999999998  2   234589999999999999999999853   244699999


Q ss_pred             EecCCCCCCceeEEEEEEcccCCCcccEEEEcc
Q 021238           81 YDWDIIWKSTVLGSVIVTVESEGQTGAVWYTLD  113 (315)
Q Consensus        81 ~d~d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~  113 (315)
                      ||+|..+++++||++.+++...+....+|+.|.
T Consensus        90 ~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll  122 (138)
T d1w15a_          90 LDSERGSRNEVIGRLVLGATAEGSGGGHWKEIC  122 (138)
T ss_dssp             EECCTTSCCEEEEEEEESTTCCSHHHHHHHHHH
T ss_pred             EeCCCCCCCCEEEEEEEcchhCCchHHHHHHHH
Confidence            999999999999999999987654444565543

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=3.7e-17  Score=133.85  Aligned_cols=105  Identities=32%  Similarity=0.468  Sum_probs=88.3

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC--C---EEEEeecccCCCCCeecceEEEEecCC---CcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG--S---EKRFSSMVPGSRYPMWGEEFNFSVDEL---PVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~--~---~~~rT~vi~~tlnP~w~e~f~f~v~~~---~~~L~~~V~   81 (315)
                      .+..+.|.|+|++|+||+..+..+.+||||++++.  .   ..++|++++++.||.|||+|.|.+...   ...|.|.||
T Consensus        21 ~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~  100 (157)
T d1uowa_          21 VPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVL  100 (157)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEE
T ss_pred             cCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEc
Confidence            35568999999999999999999999999999982  2   234899999999999999999998642   457999999


Q ss_pred             ecCCCCCCceeEEEEEEcccC--------------CCcccEEEEccC
Q 021238           82 DWDIIWKSTVLGSVIVTVESE--------------GQTGAVWYTLDS  114 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l--------------~~~~~~w~~L~~  114 (315)
                      |++.++++++||++.|++...              .....+|++|.+
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~  147 (157)
T d1uowa_         101 DYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (157)
T ss_dssp             ECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             ccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCC
Confidence            999999999999999999764              233457888764

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=5.6e-17  Score=129.90  Aligned_cols=93  Identities=18%  Similarity=0.279  Sum_probs=80.4

Q ss_pred             CceeEEEEEEEEeecCCCCCCCCC-CceEEEEEE---CCEEEEeecccCCCCCeecceEEEEe-cC---CCcEEEEEEEe
Q 021238           11 NSAYLIKLELLAAKNLIGANLNGT-SDPYAIITC---GSEKRFSSMVPGSRYPMWGEEFNFSV-DE---LPVQIIVTIYD   82 (315)
Q Consensus        11 ~~~g~L~V~Ii~A~~L~~~d~~g~-sDPyv~v~l---~~~~~rT~vi~~tlnP~w~e~f~f~v-~~---~~~~L~~~V~d   82 (315)
                      ...+.|.|+|++|+||+.++..+. +||||++.+   .....+|++++++.||.|||+|.|.. ..   ....|+|+|||
T Consensus        19 ~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d   98 (138)
T d1ugka_          19 FERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILS   98 (138)
T ss_dssp             GGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEE
Confidence            456789999999999999887665 799999998   45567999999999999999999974 32   24579999999


Q ss_pred             cCCCCCCceeEEEEEEcccCC
Q 021238           83 WDIIWKSTVLGSVIVTVESEG  103 (315)
Q Consensus        83 ~d~~~~dd~iG~~~i~l~~l~  103 (315)
                      +|.++++++||++.++|.++.
T Consensus        99 ~d~~~~~~~iG~~~i~L~~~~  119 (138)
T d1ugka_          99 FDRFSRDDIIGEVLIPLSGIE  119 (138)
T ss_dssp             ECSSCCCCCCEEEEEECTTCC
T ss_pred             CCCCCCCcEEEEEEEEccccc
Confidence            999999999999999999973

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=7e-16  Score=121.05  Aligned_cols=105  Identities=15%  Similarity=0.260  Sum_probs=84.9

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEECCE-----EEEeecccCCCCCeecceEEEEecCCCcEEEEEEEecCCCCCC
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCGSE-----KRFSSMVPGSRYPMWGEEFNFSVDELPVQIIVTIYDWDIIWKS   89 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~~~-----~~rT~vi~~tlnP~w~e~f~f~v~~~~~~L~~~V~d~d~~~~d   89 (315)
                      .+.|.+..+..+++  ..+.+||||.|+++..     ..+|.++++|+||.|||+|.|.+.+ ...|.|.|||+|    +
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            45555565555544  4788999999999432     3478899999999999999999976 578999999986    6


Q ss_pred             ceeEEEEEEcccC-------CCcccEEEEccCCCceEEEEEEeec
Q 021238           90 TVLGSVIVTVESE-------GQTGAVWYTLDSPSGQVCLHIKTIK  127 (315)
Q Consensus        90 d~iG~~~i~l~~l-------~~~~~~w~~L~~~~G~i~~~l~~~~  127 (315)
                      +++|.+.+++.++       +...+.|++|++ .|++++.+.+..
T Consensus        79 ~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~~-~Gkl~l~v~~f~  122 (123)
T d1bdya_          79 DPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP-QAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS-SCEEEEEEEEEE
T ss_pred             cccCccEEehhheeeccccCCCcccEEEeCCC-CEEEEEEEEEec
Confidence            8999999999875       445678999986 899999998763

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=4.7e-17  Score=131.37  Aligned_cols=104  Identities=26%  Similarity=0.380  Sum_probs=86.6

Q ss_pred             CCceeEEEEEEEEeecCCCCCCCCCCceEEEEEEC-----CEEEEeecccCCCCCeecceEEEEecC---CCcEEEEEEE
Q 021238           10 TNSAYLIKLELLAAKNLIGANLNGTSDPYAIITCG-----SEKRFSSMVPGSRYPMWGEEFNFSVDE---LPVQIIVTIY   81 (315)
Q Consensus        10 ~~~~g~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~-----~~~~rT~vi~~tlnP~w~e~f~f~v~~---~~~~L~~~V~   81 (315)
                      .+..|.|.|+|++|+||++.+..+.+||||++++.     ..+.+|++++++.||.|||+|.|.+..   ....|.|.||
T Consensus        16 ~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~   95 (145)
T d1dqva2          16 LPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVV   95 (145)
T ss_dssp             ETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEE
T ss_pred             cCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEE
Confidence            45678999999999999999999999999999983     224689999999999999999998753   2456999999


Q ss_pred             ecCCCCCCceeEEEEEEcccCC-CcccEEEEcc
Q 021238           82 DWDIIWKSTVLGSVIVTVESEG-QTGAVWYTLD  113 (315)
Q Consensus        82 d~d~~~~dd~iG~~~i~l~~l~-~~~~~w~~L~  113 (315)
                      |++..+++++||++.++++.+. .+..+|++|.
T Consensus        96 d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~  128 (145)
T d1dqva2          96 DYDCIGHNEVIGVCRVGPEAADPHGREHWAEML  128 (145)
T ss_dssp             ECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSS
T ss_pred             ecCCCCCCcEEEEEEECchHcCchhhHHHHHHH
Confidence            9999999999999999998763 2234566654

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.5e-13  Score=103.23  Aligned_cols=95  Identities=17%  Similarity=0.257  Sum_probs=72.3

Q ss_pred             EEEEEEEEeecCCCCCCCCCCceEEEEEEC------CEEEEeec--ccCCCCCeecce-EEEE-ecCC-CcEEEEEEEec
Q 021238           15 LIKLELLAAKNLIGANLNGTSDPYAIITCG------SEKRFSSM--VPGSRYPMWGEE-FNFS-VDEL-PVQIIVTIYDW   83 (315)
Q Consensus        15 ~L~V~Ii~A~~L~~~d~~g~sDPyv~v~l~------~~~~rT~v--i~~tlnP~w~e~-f~f~-v~~~-~~~L~~~V~d~   83 (315)
                      .|+|+|++|++|+..    +.||||+|.+.      ..+.+|++  ..+++||.|||. |.+. +..+ -..|+|.|||+
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~   77 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEE   77 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEET
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECC
Confidence            589999999999764    58999999982      23344443  357899999976 4443 4432 44799999997


Q ss_pred             CCCCCCceeEEEEEEcccCCCcccEEEEccCCCce
Q 021238           84 DIIWKSTVLGSVIVTVESEGQTGAVWYTLDSPSGQ  118 (315)
Q Consensus        84 d~~~~dd~iG~~~i~l~~l~~~~~~w~~L~~~~G~  118 (315)
                      |    +++||++.+||+.+..+ .+|++|..+.|+
T Consensus        78 d----~~~lG~~~ipl~~l~~G-yR~vpL~~~~g~  107 (122)
T d2zkmx2          78 G----NKFLGHRIIPINALNSG-YHHLCLHSESNM  107 (122)
T ss_dssp             T----TEEEEEEEEEGGGBCCE-EEEEEEECTTCC
T ss_pred             C----CCEEEEEEEEcccCcCC-ceEEEccCCCcC
Confidence            5    78999999999998654 688999876665

>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: TFIIH domain
domain: TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.059  Score=39.06  Aligned_cols=78  Identities=13%  Similarity=0.201  Sum_probs=55.0

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchH
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN  271 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd  271 (315)
                      .|.||++...+-|...-. ...++.+++.||...+-+....--+.+.|+.+.|             ....|.|++--.+.
T Consensus        21 ~GtL~l~~d~l~W~p~~~-~~~~v~~~~~~I~~~q~Spe~s~Kv~Lkiv~~~~-------------~s~~F~Ftn~~~~~   86 (108)
T d2rnrb1          21 DGALYLMAERIAWAPEGK-DRFTISHMYADIKCQKISPEGKAKIQLQLVLHAG-------------DTTNFHFSNESTAV   86 (108)
T ss_dssp             EEEEEECSSEEEEEESSC-SSCSEEEETTTEEEEEECCTTCSSEEEEEEETTS-------------CEEEEEECCTTTHH
T ss_pred             CcEEEEEcCeEEEEcCCC-CCceEEEEhhhhhceecCCCCcccceeEEEEeCC-------------CeEEEEECChHHHH
Confidence            499999999999998653 3556999999999876655432223688888765             55778888766664


Q ss_pred             HHHHHHHHHHHh
Q 021238          272 HALRQLQRTAKN  283 (315)
Q Consensus       272 ~~~~~l~~~~~~  283 (315)
                      ..-+.+..++++
T Consensus        87 ~~Rd~iK~~Lq~   98 (108)
T d2rnrb1          87 KERDAVKDLLQQ   98 (108)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            444555555554

>d1t77a2 b.55.1.6 (A:2076-2185) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: PreBEACH PH-like domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.011  Score=43.41  Aligned_cols=66  Identities=17%  Similarity=0.185  Sum_probs=47.3

Q ss_pred             ecceeeeee-ecccceeEEeecceeeeeecCCCc--------------eeEEEEecCceeEEEeeccccccCcEEEEEec
Q 021238          179 LSYSCVIER-SFLYHGRMYVSAWHICFHSNAFSR--------------QMKVIIPIGDIDEIQRSQHAFINPAITIILRM  243 (315)
Q Consensus       179 ~~~~c~l~~-~~~~~G~lyis~~~~cF~s~~~g~--------------~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~  243 (315)
                      -...|.|-. ..-+.|++.++.++++|..+....              .....+|++||..|-+..-..-.-||+|.+.+
T Consensus         5 ~s~~c~lItp~~~~~G~l~It~~~iyF~~d~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~v~~Rr~ll~~~alEif~~~   84 (110)
T d1t77a2           5 LSTPAQLVAPSVVVKGTLSVTSSELYFEVDEEDPNFKKIDPKILAYTEGLHGKWLFTEIRSIFSRRYLLQNTALEIFMAN   84 (110)
T ss_dssp             EEEEEEEECSSCEEEEEEEECSSEEEEEECTTCHHHHHSCHHHHHHCCCTTCEEEGGGEEEEEEEEETTEEEEEEEEETT
T ss_pred             EEeeEEEEEecceEEEEEEEEccEEEEEecCCCcchhcccccccccccccceEEeHHHHHHHHhhhhcCCceEEEEEEcC
Confidence            345688877 445569999999999998753211              12246999999999986643333399999975


Q ss_pred             C
Q 021238          244 G  244 (315)
Q Consensus       244 g  244 (315)
                      |
T Consensus        85 ~   85 (110)
T d1t77a2          85 R   85 (110)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1zsqa1 b.55.1.8 (A:74-198) Myotubularin-related protein 2, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: GRAM domain
domain: Myotubularin-related protein 2, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.15  Score=37.84  Aligned_cols=55  Identities=13%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             ccceeEEeecceeeeeecCCCceeEEEEecCceeEEEeecccccc----CcEEEEEecC
Q 021238          190 LYHGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFIN----PAITIILRMG  244 (315)
Q Consensus       190 ~~~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~----~~i~i~~~~g  244 (315)
                      ++.|.+|+|.-++.|.+..-.....+-||+.-|..|+|-......    ..+.|..++.
T Consensus        27 ~~~G~L~lTnyrliF~~~~~~~~~~~~ipl~~I~~v~k~~~~~~~~~~~~~L~I~CKDf   85 (125)
T d1zsqa1          27 AVRGTLTVTNYRLYFKSMERDPPFVLDASLGVINRVEKIGGASSRGENSYGLETVCKDI   85 (125)
T ss_dssp             EEEEEEEEESSEEEEEESSSSSCEEEEEEGGGEEEEEEECCTTCCSTTCSEEEEEETTT
T ss_pred             ccceEEEEEeeEEEEEcCCCCccEEEEeccceeeeeeecccccccCCccccEEEEeccC
Confidence            457999999999999987666566788999999999986533221    2689988754

>d2hthb1 b.55.1.12 (B:3-131) Vacuolar protein sorting protein 36, VPS36 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.55  Score=34.80  Aligned_cols=88  Identities=14%  Similarity=0.208  Sum_probs=54.8

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEe-cCCCCCCCCC---CCCCCCceEEEEeee
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILR-MGAGGHGVPP---LGSPDGRVRYKFASF  267 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~-~g~~~~~~~~---~~~~~~~~~~~F~sf  267 (315)
                      .|++|+|.+.++|...... ...+.+|+..|..++.+...+ ..+..|+.. ++. ..+.++   ..+++...+..|-+=
T Consensus        35 ~G~l~LTthRli~~~~~~~-~~s~~lpl~~i~~~e~~~~~f-g~s~ki~l~l~~~-~~~~~~gp~~~s~~~~~KLsFk~G  111 (129)
T d2hthb1          35 AGTLLLSTHRLIWRDQKNH-ECCMAILLSQIVFIEEQAAGI-GKSAKIVVHLHPA-PPNKEPGPFQSSKNSYIKLSFKEH  111 (129)
T ss_dssp             CEEEEEESSEEEEEETTCC-SCCEEEEGGGEEEEEEECCTT-SSCCEEEEEECCC-CCCSSSCCCSTTSCCEEEEEETTS
T ss_pred             ceEEEEEeceEEEecCCCC-ceEEEEEhHHceeeeEEcccc-cCCceEEEEEccC-CcCCcCCCcCcCCceEEEEEECCC
Confidence            3999999999999866544 578999999999999887753 444333332 110 011111   122333355556663


Q ss_pred             cchHHHHHHHHHHHHh
Q 021238          268 WNRNHALRQLQRTAKN  283 (315)
Q Consensus       268 ~~rd~~~~~l~~~~~~  283 (315)
                      - -++.++.|.+.+++
T Consensus       112 G-~~eF~~~l~~al~~  126 (129)
T d2hthb1         112 G-QIEFYRRLSEEMTQ  126 (129)
T ss_dssp             C-HHHHHHHHHHHHHH
T ss_pred             C-HHHHHHHHHHHHHh
Confidence            3 36677777777665

>d2caya1 b.55.1.12 (A:1-99,A:252-282) Vacuolar protein sorting protein 36, VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: VPS36 N-terminal domain-like
domain: Vacuolar protein sorting protein 36, VPS36
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.24  Score=36.99  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=52.1

Q ss_pred             ceeEEeecceeeeeecCCCceeEEEEecCceeEEEeeccccccCcEEEEEecCCCCCCCCCCCCCCCceEEEEeeecchH
Q 021238          192 HGRMYVSAWHICFHSNAFSRQMKVIIPIGDIDEIQRSQHAFINPAITIILRMGAGGHGVPPLGSPDGRVRYKFASFWNRN  271 (315)
Q Consensus       192 ~G~lyis~~~~cF~s~~~g~~~~~~i~~~~i~~i~k~~~~~~~~~i~i~~~~g~~~~~~~~~~~~~~~~~~~F~sf~~rd  271 (315)
                      .|++|+|.+.++|-.........+.+|+..|..++-+.. ++..+..|+++-.      ++- .++.-.++.|-.-- -.
T Consensus        44 ~G~l~LTshRiI~v~~~~~~~~S~slpL~~i~~~e~~~~-~~~ss~KI~l~l~------~~~-~~~~~vklsFr~gg-~~  114 (130)
T d2caya1          44 RGRIFLTSQRIIYIDDAKPTQNSLGLELDDLAYVNYSSG-FLTRSPRLILFFK------DPS-SSTEFVQLSFRKSD-GV  114 (130)
T ss_dssp             SEEEEEESSEEEEEESSCHHHHCEEEEGGGEEEEEEECS-SSSSSCEEEEEES------SCS-STTCCEEEEESSSC-CH
T ss_pred             CceEEEEeeEEEEecCCCCceeEEEeEhhheeEeEEEcc-ccCCCCeEEEEeC------CCC-CCCCEEEEEEcCCC-hH
Confidence            499999999999986543335579999999999997765 3455666666432      221 11222344443322 23


Q ss_pred             HHHHHHHHHHHh
Q 021238          272 HALRQLQRTAKN  283 (315)
Q Consensus       272 ~~~~~l~~~~~~  283 (315)
                      +.++.|.+.+++
T Consensus       115 ~F~~~~~~~~~~  126 (130)
T d2caya1         115 LFSQATERALEN  126 (130)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            456666666654