Citrus Sinensis ID: 021245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHccccccEEEEEccccccEEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEcccccccccHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEEEEEcccccHHHHHHHHHHcccEEEEEEEEEEccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHccccEEEEEcccccccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEccccEEEEEEEEEcccccEcccHHHHHHHHHHHcccHccccccccccccEcccccccccEEEEEEccccccHHHHHHHHHHHccccEEEEEEEEcccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccEEEEEEEEccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEc
Coil and Loop (DISEMBL)
manaywpyfdpeyeslslrinpprasvdnsscpectvvkvdsvnkpgILLEVVQVLSDLDLIITKayissdggwfmDVFHVIDQqgkkitdgkTIDYIEkalgpkghitagaktwpskqvgvhsvgdhtaieligrdrpgLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVnddttcravgdQTRLSLMEEQLKNILrgcddedsekVARTSFSMGFTHVDRRLHQMFfadrdyegggvttadqvdhtpsfkpeitverledkgysvvnvkCRDRAKLMFDIVCTLTDMQYVVFHAAissdgphasqvrvle
Flexible Loop (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIlrgcddedseKVARTSfsmgfthvDRRLHQMFFADRDYEGGGvttadqvdhtpsfkpeitverledkgysvvnvkcrdRAKLMFDIVCTLTDMQYVVFHAAISsdgphasqvrvle
Low Complexity Region (SEG)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE
Disordered region (IsUnstruct)
***AYWPYFDPEYESLSLRI**********SCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC********ARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAI**************
Disordered Region (DISOPRED)
**NAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGK**********************************VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG**********************RRLHQMFFADR******************FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE
Disordered Region (DISEMBL)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS************
Disordered Region (DISPRO)
*ANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC****************************FADRDY****************FKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q98C27	933	[Protein-PII] uridylyltra	yes	no	0.231	0.078	0.370	2e-08
Q5FPT6	949	[Protein-PII] uridylyltra	yes	no	0.295	0.097	0.350	5e-08
Q53245	948	[Protein-PII] uridylyltra	N/A	no	0.253	0.084	0.382	6e-08
Q9RAE4	944	[Protein-PII] uridylyltra	N/A	no	0.215	0.072	0.405	9e-08
Q8RQD1	933	[Protein-PII] uridylyltra	yes	no	0.165	0.055	0.358	1e-07
Q8G312	934	[Protein-PII] uridylyltra	yes	no	0.288	0.097	0.326	2e-07
C0RGK0	934	[Protein-PII] uridylyltra	yes	no	0.288	0.097	0.326	2e-07
Q8YES3	934	[Protein-PII] uridylyltra	yes	no	0.288	0.097	0.326	2e-07
Q57FN0	934	[Protein-PII] uridylyltra	yes	no	0.288	0.097	0.326	2e-07
Q2YNZ1	934	[Protein-PII] uridylyltra	yes	no	0.288	0.097	0.326	2e-07

>sp|Q98C27|GLND_RHILO [Protein-PII] uridylyltransferase OS=Rhizobium loti (strain MAFF303099) GN=glnD PE=3 SV=1

 Score = 60.1 bits (144), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 47/81 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPRA + N+     +V++V+ +++PG+L E+   LSDL L I  A+I++ G   +D F+V
Sbjct: 833 PPRAEIRNTLSNRFSVIEVEGLDRPGLLSEITGTLSDLSLDIASAHITTFGEKVIDTFYV 892

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI     I  I   L
Sbjct: 893 TDLTGQKIDSPARIATIRNRL 913

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.
Rhizobium loti (strain MAFF303099) (taxid: 266835)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 5EC: 9

>sp|Q5FPT6|GLND_GLUOX [Protein-PII] uridylyltransferase OS=Gluconobacter oxydans (strain 621H) GN=glnD PE=3 SV=1

 Score = 58.9 bits (141), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 4/97 (4%)

Query: 10  DPEYESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITK 65
           D  + S S R+     PPR  +DN++    TV++V+  ++PG+L +V   LS   L I+ 
Sbjct: 839 DASHHSTSRRMRAIHVPPRVVIDNTASDRHTVIEVNGRDRPGLLHDVTSALSSASLQISS 898

Query: 66  AYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           A+I++ G   +DVF+V D  G KITD   +  + + L
Sbjct: 899 AHITTYGMRAVDVFYVRDLLGMKITDPVRLARLRETL 935

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Gluconobacter oxydans (strain 621H) (taxid: 290633)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q53245|GLND_RHITR [Protein-PII] uridylyltransferase OS=Rhizobium tropici GN=glnD PE=3 SV=2

 Score = 58.5 bits (140), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP   + NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 825 PPSVIITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 884

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G+KI++     YI   L
Sbjct: 885 ADLVGQKISNENRRAYITARL 905

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium tropici (taxid: 398)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q9RAE4|GLND_RHILV [Protein-PII] uridylyltransferase OS=Rhizobium leguminosarum bv. viciae GN=glnD PE=3 SV=2

 Score = 58.2 bits (139), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 45/69 (65%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PP  ++ NS   + TV++V+ +++PG+L E+  VLSDL L I  A I++ G   +D F+V
Sbjct: 824 PPSVNITNSLSNKFTVIEVECLDRPGLLSEITAVLSDLSLDIQSARITTFGEKVIDTFYV 883

Query: 82  IDQQGKKIT 90
            D  G+KI+
Sbjct: 884 TDLVGQKIS 892

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Rhizobium leguminosarum bv. viciae (taxid: 387)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8RQD1|GLND_AZOBR [Protein-PII] uridylyltransferase OS=Azospirillum brasilense GN=glnD PE=3 SV=1

 Score = 57.4 bits (137), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 50/81 (61%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR  +DN++    TV++V+  ++PG+L ++ + L++L L I+ A IS+ G   +DVF+V
Sbjct: 844 PPRVLIDNNASTTHTVIEVNGRDRPGLLYDLTRALTNLTLQISSAKISTYGEKAIDVFYV 903

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G K+T    +  I + L
Sbjct: 904 KDVFGLKVTHENKLAQIRERL 924

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Azospirillum brasilense (taxid: 192)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8G312|GLND_BRUSU [Protein-PII] uridylyltransferase OS=Brucella suis biovar 1 (strain 1330) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella suis biovar 1 (strain 1330) (taxid: 204722)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|C0RGK0|GLND_BRUMB [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q8YES3|GLND_BRUME [Protein-PII] uridylyltransferase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q57FN0|GLND_BRUAB [Protein-PII] uridylyltransferase OS=Brucella abortus biovar 1 (strain 9-941) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella abortus biovar 1 (strain 9-941) (taxid: 262698)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

>sp|Q2YNZ1|GLND_BRUA2 [Protein-PII] uridylyltransferase OS=Brucella abortus (strain 2308) GN=glnD PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 54/92 (58%)

Query: 23  PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
           PR  ++N+   + TV++V+ +++PG+L E+  ++SDL L I  A+I++ G   +D F+V 
Sbjct: 834 PRVEINNTLSNKFTVIEVEGLDRPGLLSELTGLISDLSLDIASAHITTFGEKVIDSFYVT 893

Query: 83  DQQGKKITDGKTIDYIEKALGPKGHITAGAKT 114
           D  G KI++      I++ L        GA+T
Sbjct: 894 DLVGHKISNATRQGNIKRKLLALLGAENGART 925

Modifies, by uridylylation or deuridylylation the PII (GlnB) regulatory protein.

Brucella abortus (strain 2308) (taxid: 359391)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 5

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
302142726	466	unnamed protein product [Vitis vinifera]	0.971	0.656	0.803	1e-148
359492290	465	PREDICTED: uncharacterized protein LOC10	0.971	0.658	0.803	1e-148
225457853	447	PREDICTED: uncharacterized protein LOC10	0.971	0.684	0.803	1e-148
255558468	447	amino acid binding protein, putative [Ri	0.971	0.684	0.806	1e-146
224066763	444	predicted protein [Populus trichocarpa]	0.961	0.682	0.803	1e-142
224082380	445	predicted protein [Populus trichocarpa]	0.965	0.683	0.803	1e-141
356509344	445	PREDICTED: uncharacterized protein LOC10	0.965	0.683	0.787	1e-141
356515959	445	PREDICTED: uncharacterized protein LOC10	0.965	0.683	0.777	1e-138
356552731	448	PREDICTED: uncharacterized protein LOC10	0.971	0.683	0.764	1e-138
356546978	449	PREDICTED: uncharacterized protein LOC10	0.971	0.681	0.761	1e-137

>gi|302142726|emb|CBI19929.3| unnamed protein product [Vitis vinifera]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/310 (80%), Positives = 276/310 (89%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 20  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 79

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 80  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 139

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 140 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 199

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 200 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 257

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 258 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 315

Query: 301 ISSDGPHASQ 310
           ISSDGP+ASQ
Sbjct: 316 ISSDGPYASQ 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492290|ref|XP_003634395.1| PREDICTED: uncharacterized protein LOC100250578 isoform 2 [Vitis vinifera]

 Score =  530 bits (1366), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/310 (80%), Positives = 276/310 (89%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 19  MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 78

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 79  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 138

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 139 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 198

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 199 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 256

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 257 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 314

Query: 301 ISSDGPHASQ 310
           ISSDGP+ASQ
Sbjct: 315 ISSDGPYASQ 324

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457853|ref|XP_002268570.1| PREDICTED: uncharacterized protein LOC100250578 isoform 1 [Vitis vinifera] gi|147789965|emb|CAN73861.1| hypothetical protein VITISV_007291 [Vitis vinifera]

 Score =  530 bits (1365), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 249/310 (80%), Positives = 276/310 (89%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS+RINPPR SVDN SC +CT++KVDS+NKPGILLEVVQ+L+D+D
Sbjct: 1   MAKVCWPYFDPEYENLSMRINPPRVSVDNLSCSDCTLIKVDSMNKPGILLEVVQILTDID 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           L+ITKAYISSDGGWFMDVFHV DQQG KITDGK IDYIEKALGPKG    G KTWP K+V
Sbjct: 61  LLITKAYISSDGGWFMDVFHVTDQQGNKITDGKIIDYIEKALGPKGDTIDGVKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIG+DRPGLLSEISAVLA+L FNV  AEVWTHNRRIACV+YVNDD TC
Sbjct: 121 GVHSVGDHTAIELIGKDRPGLLSEISAVLADLHFNVVGAEVWTHNRRIACVVYVNDDATC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+MEEQLKN+LRGC+D+D  KVARTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 181 RAVDDPTRLSVMEEQLKNVLRGCEDDD--KVARTSFSMGFTHVDRRLHQMLFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G T   + D+ PSFKP+IT++R EDKGYS V+V C+DR KLMFDIVCTLTDMQYVVFHA+
Sbjct: 239 GTTI--EADYPPSFKPKITIDRCEDKGYSAVSVMCKDRPKLMFDIVCTLTDMQYVVFHAS 296

Query: 301 ISSDGPHASQ 310
           ISSDGP+ASQ
Sbjct: 297 ISSDGPYASQ 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558468|ref|XP_002520259.1| amino acid binding protein, putative [Ricinus communis] gi|223540478|gb|EEF42045.1| amino acid binding protein, putative [Ricinus communis]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/310 (80%), Positives = 276/310 (89%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC ECT++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCNECTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMD+FHV DQQGKKI D KTIDYIEKALGPK +     KTWP K+V
Sbjct: 61  FIITKAYISSDGGWFMDIFHVTDQQGKKIIDSKTIDYIEKALGPKEYNKDELKTWPGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEI+AVLANL FNVAAAEVWTHNRRIACV+YVND TTC
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEITAVLANLHFNVAAAEVWTHNRRIACVVYVNDYTTC 180

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           R V D TRLS+MEEQLKNILRGC  ED EK +RTSFSMGFTH+DRRLHQMFFADRDYEGG
Sbjct: 181 RPVDDPTRLSVMEEQLKNILRGC--EDDEKASRTSFSMGFTHIDRRLHQMFFADRDYEGG 238

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVT  ++V++  SFKP+ITVER  +KGYSVV+V C+DRAKL+FDIVCTLTDMQYVVFHA 
Sbjct: 239 GVT--NEVEYPSSFKPKITVERCGEKGYSVVSVCCKDRAKLLFDIVCTLTDMQYVVFHAT 296

Query: 301 ISSDGPHASQ 310
           ISSDGP+ASQ
Sbjct: 297 ISSDGPYASQ 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066763|ref|XP_002302203.1| predicted protein [Populus trichocarpa] gi|222843929|gb|EEE81476.1| predicted protein [Populus trichocarpa]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/310 (80%), Positives = 271/310 (87%), Gaps = 7/310 (2%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA+  WPYFDPEYE+LS RINPPR SVDN+SC + T+VKVDS+NKPGILLEVVQVL+DLD
Sbjct: 1   MASVCWPYFDPEYENLSTRINPPRVSVDNTSCNDSTLVKVDSMNKPGILLEVVQVLTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKITD KTIDYIEKALGPK        TW  K+V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKITDIKTIDYIEKALGPKSQ--EEVTTWADKRV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVG HTAIELIG+DRPGLLSEISAVLANL FNV AAEVWTHN RIACV+YVNDDTT 
Sbjct: 119 GVHSVGGHTAIELIGKDRPGLLSEISAVLANLHFNVVAAEVWTHNSRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS+ME+QLKNILRGC+++++    RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVADPTRLSIMEDQLKNILRGCENDEA---GRTSFSMGFTHVDRRLHQMLFADRDYEGG 235

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  +VD+ PS KP+ITVER EDKGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 236 IVAT--EVDYPPSIKPKITVERCEDKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 293

Query: 301 ISSDGPHASQ 310
           ISSDGPHASQ
Sbjct: 294 ISSDGPHASQ 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082380|ref|XP_002306671.1| predicted protein [Populus trichocarpa] gi|222856120|gb|EEE93667.1| predicted protein [Populus trichocarpa]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 249/310 (80%), Positives = 266/310 (85%), Gaps = 6/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+LS RINPPR SVDN+SC + T++KVDS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENLSTRINPPRVSVDNTSCSDSTLIKVDSMNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
           LIITKAYISSDGGWFMDVFHV DQQGKKI D KTIDYIEKALGPKG       TW  K V
Sbjct: 61  LIITKAYISSDGGWFMDVFHVTDQQGKKIADLKTIDYIEKALGPKGQ--EEVTTWSGKPV 118

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIEL GRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACV+YVNDDTT 
Sbjct: 119 GVHSVGDHTAIELTGRDRPGLLSEISAVLANLHFNVVAAEVWTHNRRIACVVYVNDDTTS 178

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           RAV D TRLS ME+QLKNILRGCDD+  EK  RTSFSMGFTHVDRRLHQM FADRDYEGG
Sbjct: 179 RAVDDPTRLSAMEDQLKNILRGCDDD--EKEGRTSFSMGFTHVDRRLHQMLFADRDYEGG 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V T  ++   PSFKP+ITVE  E+KGYSVV V+C+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 IVAT--EIHDPPSFKPKITVEHCEEKGYSVVTVRCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQ 310
           ISSD PHASQ
Sbjct: 295 ISSDAPHASQ 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509344|ref|XP_003523410.1| PREDICTED: uncharacterized protein LOC100789173 [Glycine max]

 Score =  505 bits (1301), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 244/310 (78%), Positives = 267/310 (86%), Gaps = 6/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR S+DN+SC +CT++KVDSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSMDNASCHDCTLIKVDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEKALGPK   T G K WPSK+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKALGPKSQSTEGVKNWPSKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGDHTAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +AV +  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAVDEANRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P+IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPKITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQ 310
           +SSDGP+A Q
Sbjct: 295 VSSDGPYALQ 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515959|ref|XP_003526664.1| PREDICTED: uncharacterized protein LOC100797293 [Glycine max]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/310 (77%), Positives = 262/310 (84%), Gaps = 6/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S R+NPPR SVDN+SC +CT++K+DSVNKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRMNPPRVSVDNASCHDCTLIKIDSVNKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            +ITKAYISSDGGWFMDVFHV DQQGKKITD KTID IEKALGPK   T G K WPSK V
Sbjct: 61  FVITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDLIEKALGPKSKSTEGVKNWPSKHV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHSVGD+TAIELIGRDRPGLLSEISAVLANL FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSVGDYTAIELIGRDRPGLLSEISAVLANLHFNVFAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +   D  RLSLMEEQL NILRGC   D EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QVADDPKRLSLMEEQLNNILRGC---DGEKVARTSFSMGSTHMDRRLHQMLFADRDYESY 236

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
            V  A +VD  PS +P IT+ER E+KGYSVV+VKC+DRAKLMFDIVCTLTDMQYVVFHA 
Sbjct: 237 AV--AREVDSPPSLRPRITIERCEEKGYSVVSVKCKDRAKLMFDIVCTLTDMQYVVFHAT 294

Query: 301 ISSDGPHASQ 310
           +SSDGP+A Q
Sbjct: 295 VSSDGPYALQ 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552731|ref|XP_003544716.1| PREDICTED: uncharacterized protein LOC100789044 [Glycine max]

 Score =  495 bits (1275), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 267/310 (86%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           MA   WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MAKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G   W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVNCWQGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHTAIELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTAIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS+MEEQL +ILRGC  ED EKVARTSF+MGFTH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIMEEQLNHILRGC--EDDEKVARTSFTMGFTHMDRRLHQMLFADRDYESV 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           G+TT D VD  PSF+P+I +ER+ +KGYSVV+V+C+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GLTTTD-VDCPPSFRPKIRIERIVEKGYSVVSVRCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQ 310
           ISS+G +ASQ
Sbjct: 297 ISSEGQYASQ 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546978|ref|XP_003541896.1| PREDICTED: uncharacterized protein LOC100797658 [Glycine max]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 236/310 (76%), Positives = 264/310 (85%), Gaps = 4/310 (1%)

Query: 1   MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
           M    WPYFDPEYE+ S RINPPR SVDN SC +CT++K DS+NKPGILLEVVQ+L+DLD
Sbjct: 1   MTKVCWPYFDPEYENFSNRINPPRVSVDNDSCHDCTLIKFDSINKPGILLEVVQILTDLD 60

Query: 61  LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
            IITKAYISSDGGWFMDVFHV DQQGKKITD KTID+IEK LGPKG  T G K+W  K+V
Sbjct: 61  FIITKAYISSDGGWFMDVFHVTDQQGKKITDSKTIDFIEKTLGPKGQSTEGVKSWKGKRV 120

Query: 121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
           GVHS+GDHT IELIGRDRPGLLSEISAVLA+L+FNV AAEVWTHNRRIACVLYVND T  
Sbjct: 121 GVHSIGDHTVIELIGRDRPGLLSEISAVLASLQFNVIAAEVWTHNRRIACVLYVNDATN- 179

Query: 181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
           +A+ D  RLS++EEQL +ILRGC  ED EKVARTSFSMG TH+DRRLHQM FADRDYE  
Sbjct: 180 QAMDDSKRLSIIEEQLNHILRGC--EDDEKVARTSFSMGITHMDRRLHQMLFADRDYESA 237

Query: 241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
           GVTT D VD  P F+P I +ER+ +KGYSVV+VKC+DRAKLMFDIVCTLTDM+YVVFHA 
Sbjct: 238 GVTTTD-VDCPPCFRPNIRIERIVEKGYSVVSVKCKDRAKLMFDIVCTLTDMEYVVFHAT 296

Query: 301 ISSDGPHASQ 310
           ISS+G +ASQ
Sbjct: 297 ISSEGQYASQ 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2025317	453	ACR3 "ACT domain repeat 3" [Ar	0.971	0.675	0.751	1.3e-125
TAIR|locus:2033223	455	ACR4 "ACT domain repeat 4" [Ar	0.926	0.641	0.524	1.3e-77
TAIR|locus:2078678	433	ACR6 "ACT domain repeat 6" [Ar	0.911	0.662	0.513	2.5e-72
TAIR|locus:2044289	456	ACR5 "ACT domain repeat 5" [Ar	0.946	0.653	0.491	7.7e-71
TAIR|locus:2145482	500	AT5G25320 [Arabidopsis thalian	0.660	0.416	0.495	1.6e-69
TAIR|locus:2152094	477	ACR1 "ACT domain repeat 1" [Ar	0.977	0.645	0.453	2.6e-63
TAIR|locus:2132609	449	ACR7 "ACT domain repeat 7" [Ar	0.904	0.634	0.413	1.8e-48
TAIR|locus:2034630	441	ACR8 "AT1G12420" [Arabidopsis	0.685	0.489	0.456	1.1e-46
TAIR|locus:2175458	301	ACR12 "ACT domain repeats 12"	0.241	0.252	0.272	6.5e-05
TAIR|locus:2057936	410	ACR10 "ACT domain repeats 10"	0.771	0.592	0.220	0.00045

TAIR|locus:2025317 ACR3 "ACT domain repeat 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1234 (439.4 bits), Expect = 1.3e-125, P = 1.3e-125
 Identities = 233/310 (75%), Positives = 259/310 (83%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             MA  YWPYFDPEYE+LS RINPP  S+DN+SC ECT+VKVDS+NKPGILLEVVQVL+DLD
Sbjct:     1 MAKVYWPYFDPEYENLSSRINPPSVSIDNTSCKECTLVKVDSMNKPGILLEVVQVLTDLD 60

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV 120
             L ITKAYISSDGGWFMDVFHV DQQG K+TD KTIDYIEK LGPKGH +A   TWP K+V
Sbjct:    61 LTITKAYISSDGGWFMDVFHVTDQQGNKVTDSKTIDYIEKVLGPKGHASASQNTWPGKRV 120

Query:   121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTC 180
             GVHS+GDHT+IE+I RDRPGLLSE+SAVLA+L  NV AAE WTHNRRIACVLYVND+ T 
Sbjct:   121 GVHSLGDHTSIEIIARDRPGLLSEVSAVLADLNINVVAAEAWTHNRRIACVLYVNDNATS 180

Query:   181 RAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGG 240
             RAV D  RLS MEEQL N+LRGC+++D EK ARTS S+G THVDRRLHQMFFADRDYE  
Sbjct:   181 RAVDDPERLSSMEEQLNNVLRGCEEQD-EKFARTSLSIGSTHVDRRLHQMFFADRDYEA- 238

Query:   241 GVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAA 300
              VT  D    +  F+P+ITVE  E+KGYSV+NV C DR KLMFDIVCTLTDMQY+VFHA 
Sbjct:   239 -VTKLDD-SASCGFEPKITVEHCEEKGYSVINVSCEDRPKLMFDIVCTLTDMQYIVFHAT 296

Query:   301 ISSDGPHASQ 310
             ISS G HASQ
Sbjct:   297 ISSSGSHASQ 306

GO:0006807 "nitrogen compound metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008773 "[protein-PII

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=TAS

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

TAIR|locus:2033223 ACR4 "ACT domain repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 781 (280.0 bits), Expect = 1.3e-77, P = 1.3e-77
 Identities = 158/301 (52%), Positives = 204/301 (67%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EYE L  R+NPPR  +DN SC + TV++VDS N+ GILLEVVQ+L+DL+L ITKAYIS
Sbjct:    12 DNEYEKLIRRMNPPRVVIDNDSCKKATVIRVDSANEYGILLEVVQILTDLNLTITKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   +DYI+K+LGP+   +   ++     VGV    D T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEVVLDYIQKSLGPEACFSTSMRS-----VGVIPSTDST 126

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              IEL G DRPGLLSE+SAVL +L+ +V  AE+WTHN R A V+ V DD T   + D  RL
Sbjct:   127 VIELTGCDRPGLLSELSAVLTHLKCSVLNAEIWTHNTRAAAVMQVTDDLTGCGISDPERL 186

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVD 249
             S ++  L+N+L+G    ++ + A+T  S G  H DRRLHQM F DRDYE   V     + 
Sbjct:   187 SRIKNLLRNVLKG---SNTPREAKTVVSHGEVHTDRRLHQMMFEDRDYEHRLVDDDSSIQ 243

Query:   250 HTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHAS 309
                  +P++ V+   DK YSVV V+C+DR KL+FD VCTLTDMQYVVFH ++ ++G  A 
Sbjct:   244 DERQ-RPDVCVDNWLDKDYSVVTVRCKDRPKLLFDTVCTLTDMQYVVFHGSVDTEGTEAF 302

Query:   310 Q 310
             Q
Sbjct:   303 Q 303

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=ISS

GO:0009735 "response to cytokinin stimulus" evidence=IEP

TAIR|locus:2078678 ACR6 "ACT domain repeat 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 155/302 (51%), Positives = 204/302 (67%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D EY  L  R+NPPR  +DN++  + TV++VDSVNK G LLEVVQVL+D++L+I KAYIS
Sbjct:     3 DDEYAKLIRRMNPPRVVIDNNASDDATVIQVDSVNKHGTLLEVVQVLTDMNLVIKKAYIS 62

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQ-VGVHSVGDH 128
             SDGGWFMDVF VIDQ G KI D + +DYI+K +       AG    P +  VGV    ++
Sbjct:    63 SDGGWFMDVFKVIDQDGNKIRDTQVLDYIQKRI----ESNAGWFIPPLRSSVGVMPTDEY 118

Query:   129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             T+IEL G DRPGLLSE+SAVL +L  NV  AE+WTHN R A V++V D++T  A+ D  R
Sbjct:   119 TSIELAGTDRPGLLSEVSAVLTDLHCNVVNAEIWTHNTRAAAVIHVTDNSTHSAITDPIR 178

Query:   189 LSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQV 248
             LS ++E L N++R        + A+T FS   TH +RRLHQ+ F DRDYEG  V  A   
Sbjct:   179 LSTIKELLCNVVR---TNSGSRAAKTVFSCSDTHRERRLHQIMFDDRDYEG--VKRA--- 230

Query:   249 DHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHA 308
               T + +P +T+  +E K Y+VV ++ +DR KL+FD+VCTLTDMQYVVFH  +S++   A
Sbjct:   231 -RTSASRPSVTLMNIE-KDYTVVTMRSKDRPKLVFDVVCTLTDMQYVVFHGMVSTEPVEA 288

Query:   309 SQ 310
              Q
Sbjct:   289 YQ 290

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2044289 ACR5 "ACT domain repeat 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
 Identities = 149/303 (49%), Positives = 192/303 (63%)

Query:    10 DPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS 69
             D E      R+NPPR  +DN  C + TV+KVDS NK GILLEVVQVL++L+L I KAYIS
Sbjct:    12 DDEIAKFIRRVNPPRVVIDNEVCKDVTVIKVDSANKHGILLEVVQVLTELNLTIKKAYIS 71

Query:    70 SDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHT 129
             SDGGWFMDVF+V DQ G K+TD   ++YI K+LGP    +  + +  S  +GV    D+T
Sbjct:    72 SDGGWFMDVFNVTDQDGNKVTDEIVLEYIRKSLGPD-ESSCFSPSMRST-IGVKQSVDYT 129

Query:   130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRL 189
              +EL G DRPGLLSE+ AVL +L+ NV  AE+WTH  + A VL V D+ TC A+ D  RL
Sbjct:   130 VVELTGTDRPGLLSELCAVLMDLQCNVVNAEIWTHRAKAAAVLQVTDEETCSAITDPERL 189

Query:   190 SLMEEQLKNILRGCDDEDSEKVARTSFSMGF--THVDRRLHQMFFADRDYEGGGVTTADQ 247
             S + + L  +L G       +  +T+ S     TH DR+LHQ+ FADRDY+       D 
Sbjct:   190 SKIRKLLGYVLTGGSSGRRFREPKTTVSSALNETHTDRKLHQLMFADRDYDEWE-NNVDD 248

Query:   248 VDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPH 307
              D      P++ V  L D  YS+V +KC+DR KL+FD V TLTDM YVV HA+I ++GP 
Sbjct:   249 EDKCGRVIPDVDVSNLHDLDYSIVMIKCKDRPKLLFDTVFTLTDMNYVVSHASIDAEGPQ 308

Query:   308 ASQ 310
             A Q
Sbjct:   309 AYQ 311

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016597 "amino acid binding" evidence=IEA;ISS

TAIR|locus:2145482 AT5G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 1.6e-69, Sum P(2) = 1.6e-69
 Identities = 106/214 (49%), Positives = 141/214 (65%)

Query:     1 MANAYWPYFDPEYESLSLRI-NPP-RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSD 58
             M    WPYFDP++++L  RI  PP R  +DN S  +CTVVKV+S NK G+LLEVVQ+L+D
Sbjct:     1 MQKVCWPYFDPDFDNLGERIYGPPCRVYIDNDSIQDCTVVKVNSENKQGLLLEVVQILTD 60

Query:    59 LDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH----ITAGAKT 114
             ++LIITK+YISSDGGWFMDVFHV D+ G K+TD   I++I+ A+G        I A    
Sbjct:    61 MNLIITKSYISSDGGWFMDVFHVKDEHGNKLTDKSVINHIKHAIGTSRRESDFIKASEAN 120

Query:   115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV 174
               S +  +   G+HTAIE+ G DRPGL SEI A  A+L  NV  A  W+HN R+AC+ YV
Sbjct:   121 NNSLEPQLADHGEHTAIEMTGTDRPGLFSEIFAAFADLHCNVMEAHAWSHNARLACIAYV 180

Query:   175 NDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDS 208
             +DD T   + D +RL+ +E+ L  ++R   D  S
Sbjct:   181 SDDNTHTPIDDPSRLASIEDHLSTVIRATADPAS 214

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

TAIR|locus:2152094 ACR1 "ACT domain repeat 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 2.6e-63, P = 2.6e-63
 Identities = 147/324 (45%), Positives = 197/324 (60%)

Query:     1 MANAYWPYFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLD 60
             M  AY P  D E ESL  RINPPR  VDN S PECT++KVDS NK GILL++VQVL+DLD
Sbjct:     2 MEIAYQPRIDSEIESLVERINPPRVCVDNDSDPECTLIKVDSANKYGILLDMVQVLADLD 61

Query:    61 LIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL--GPKGHITAGAKTWPSK 118
             L+I+K YISSDG WFMDVFHV DQ G K+TD   I YI++A+     G IT   ++   +
Sbjct:    62 LVISKCYISSDGEWFMDVFHVTDQLGNKLTDRSLILYIQQAICSSRTGGITKEMQSNLKR 121

Query:   119 QVGVHSVG-DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDD 177
             +V    V  +HTA E+ G +RPGLLSEISAVL+++  +V AA  WTH+ R A V+Y+ D 
Sbjct:   122 EVQQRHVSTEHTAFEITGINRPGLLSEISAVLSDIGCHVTAAVAWTHHERAAMVIYLEDG 181

Query:   178 TTCRAVGDQTRLSLMEEQLKNILRGCD--DEDSEKVART----SFSMGFTHVDRRLHQMF 231
                  + D  R + +++ L  ++       + S  V R        +G+ H +RRLH++ 
Sbjct:   182 FNGGPIIDPIRKAQVKDHLDTVMEAHHIVGDVSHVVVRVVEAKGVPVGWAHTERRLHELM 241

Query:   232 FADRDYEG--GGVTTADQVDHTPSFKPE---ITVERLEDKGYSVVNVKCRDRAKLMFDIV 286
             + + DYE         D+ D     + E   +T+E     GYS+VNVKCRDR KL+FD V
Sbjct:   242 YGEGDYENCFDCDCFGDRCDALWRGRCERIHVTIEACN--GYSMVNVKCRDRPKLLFDTV 299

Query:   287 CTLTDMQYVVFHAAISSDGPHASQ 310
             C L ++Q+VVFHA   + G  A Q
Sbjct:   300 CALKELQFVVFHAVAGAKGSTAEQ 323

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

TAIR|locus:2132609 ACR7 "ACT domain repeat 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 127/307 (41%), Positives = 176/307 (57%)

Query:    12 EYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD 71
             EYE L +R+N PR  +DN  CP  TVVK+DS   PGILLE VQ+L+D++L I KAYISSD
Sbjct:     9 EYEKLVVRMNMPRVVIDNGVCPNSTVVKIDSARSPGILLESVQLLTDMNLWIKKAYISSD 68

Query:    72 GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAI 131
             G W MDVFHV D  G K+TD   I YIEK++    H     KT      G+      TA+
Sbjct:    69 GKWNMDVFHVSDLNGDKLTDENLIRYIEKSI-ETSHY---CKT--EGYTGL------TAL 116

Query:   132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAV-GDQTRLS 190
             EL G DR GLLSE+ AVLA+L  +V  A+ WTHN RIA ++YV D  +   + GD  R+ 
Sbjct:   117 ELTGTDRVGLLSEVFAVLADLECDVVEAKAWTHNGRIASMIYVKDGNSGTPIDGDSDRVQ 176

Query:   191 LMEEQLKNILRGCDDEDSEKVARTSFSMGF-THVDRRLHQMFFADRDYEGG-GVTTAD-- 246
              +E QL+N+L+   D+  +   RT  S G  TH++RRLHQ  F DRDYE    +  +   
Sbjct:   177 RVEGQLRNLLKA--DDGYQNDTRTCVSYGGNTHMERRLHQRMFMDRDYEKKFDIEKSPIV 234

Query:   247 QVDHTPSFKPEITVERLEDKGYSVVNVKCR--DRAKLMFDI-VCTLTDMQYVVFHAAISS 303
              V + P     +   + +D+   + +V C   D A ++F   + T+ +  ++ F+   S 
Sbjct:   235 SVQNLPKRGYSVVNLQCKDRMKLLFDVVCTLTDMAYIVFHAAIRTVGETAFLEFYVRHSD 294

Query:   304 DGPHASQ 310
               P +S+
Sbjct:   295 GHPVSSE 301

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2034630 ACR8 "AT1G12420" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 106/232 (45%), Positives = 146/232 (62%)

Query:     8 YFDPEYESLSLRINPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAY 67
             Y D EYE L +R+N PR  +DN  C   T+VKVDS  + GILLE VQ+L+DL+L I KAY
Sbjct:     6 YLD-EYEKLVIRMNTPRVVIDNGVCSSATIVKVDSSRRNGILLEAVQILTDLNLSIKKAY 64

Query:    68 ISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQVGVHSVGD 127
             ISSDG W MDVFHV D  G K+ D   + YIE+++            +  + + V+ +  
Sbjct:    65 ISSDGTWNMDVFHVTDLNGNKLNDQSVLRYIEQSI---------ETVYYGENIEVNGL-- 113

Query:   128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT 187
              TA+EL G DR GLLSE+ AVL++L  +V  A++WTHN R+A V+Y+ D  +   + D  
Sbjct:   114 -TALELTGTDRIGLLSEMFAVLSDLNCDVVDAKLWTHNGRVASVIYLKDCISGAPILDSH 172

Query:   188 RLSLMEEQLKNILRGCDDEDSEKVARTSFSM-GFTHVDRRLHQMFFADRDYE 238
             R+S +E +LKN+L G  D D    A+T  ++    H++RRLHQ+ F DRDYE
Sbjct:   173 RISKIEGRLKNVLNG--DNDVNSAAKTCVTVDSMMHIERRLHQLMFEDRDYE 222

GO:0005575 "cellular_component" evidence=ND

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA;ISS

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

TAIR|locus:2175458 ACR12 "ACT domain repeats 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 101 (40.6 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
 Identities = 21/77 (27%), Positives = 41/77 (53%)

Query:    23 PRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI 82
             P   +D  + PE T+V++   N+ G L++ ++ L DL L + K  +S++G      F + 
Sbjct:    95 PMVMIDQDADPEATIVQLSFGNRLGALIDTMRALKDLGLDVIKGTVSTEGSIKQTKFSIT 154

Query:    83 DQQ-GKKITDGKTIDYI 98
              +  G+K+ D   ++ I
Sbjct:   155 KRDTGRKVEDPDLLEQI 171

GO:0008152 "metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016597 "amino acid binding" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0019408 "dolichol biosynthetic process" evidence=RCA

TAIR|locus:2057936 ACR10 "ACT domain repeats 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 0.00045, P = 0.00045
 Identities = 57/259 (22%), Positives = 112/259 (43%)

Query:    36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
             +V+ ++  +K G+  ++ ++L    L I +  +S+DG W   VF VI   GK  T    +
Sbjct:    21 SVITINCPDKTGLGCDLCRILLFFGLNIVRGDVSTDGKWCYLVFWVI---GKPNTRWNLL 77

Query:    96 DYIEKALGPKGHITAG-AKTWPS-KQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLR 153
                     P      G ++ + S  +     + D   ++L   DR GLL +++ VL  L 
Sbjct:    78 KMRLVEASPSFSWAFGISRCYLSDSESQPPKLPDLFLLKLACSDRTGLLYDVTEVLYKLE 137

Query:   154 FNVAAAEV-WTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVA 212
              N+   ++  T + ++  + +V D  T   +G   R + + E L++ + G D   S  + 
Sbjct:   138 INIEKVKISTTPDGKVMDLFFVTD--TRELLGTVKRRNEVYEYLRDAI-G-DSMISYDIE 193

Query:   213 RTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVN 272
                  +        + +  F+  D  G   +      HT S    I V+      +++++
Sbjct:   194 LVGPEITACSTSSSVAETLFSS-DVSGEHSSGL----HTSS-NVSIAVDNSLSSAHTLIH 247

Query:   273 VKCRDRAKLMFDIVCTLTD 291
             + C+D   L++DI+ T  D
Sbjct:   248 ITCQDHKGLLYDIMRTFKD 266


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.406    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      315       315   0.00082  116 3  11 22  0.39    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  614 (65 KB)
  Total size of DFA:  225 KB (2124 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  24.08u 0.10s 24.18t   Elapsed:  00:00:01
  Total cpu time:  24.08u 0.10s 24.18t   Elapsed:  00:00:01
  Start:  Sat May 11 08:46:23 2013   End:  Sat May 11 08:46:24 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd04895	72	cd04895, ACT_ACR_1, ACT domain-containing protein	5e-39
cd04925	74	cd04925, ACT_ACR_2, ACT domain-containing protein	1e-31
cd04897	75	cd04897, ACT_ACR_3, ACT domain-containing protein	1e-23
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	2e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	5e-16
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	9e-12
PRK05092	931	PRK05092, PRK05092, PII uridylyl-transferase; Prov	2e-10
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	8e-10
cd04899	70	cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domain	9e-09
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	5e-08
cd04873	70	cd04873, ACT_UUR-ACR-like, ACT domains of the bact	2e-07
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	3e-07
cd04926	72	cd04926, ACT_ACR_4, C-terminal ACT domain, of a no	3e-07
pfam01842	66	pfam01842, ACT, ACT domain	1e-06
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	5e-06
cd04900	73	cd04900, ACT_UUR-like_1, ACT domain family, ACT_UU	8e-06
COG2844	867	COG2844, GlnD, UTP:GlnB (protein PII) uridylyltran	2e-05
PRK00275	895	PRK00275, glnD, PII uridylyl-transferase; Provisio	3e-05
pfam01842	66	pfam01842, ACT, ACT domain	4e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	6e-05
cd02116	60	cd02116, ACT, ACT domains are commonly involved in	8e-05
cd04876	71	cd04876, ACT_RelA-SpoT, ACT domain found C-termina	4e-04
PRK03059	856	PRK03059, PRK03059, PII uridylyl-transferase; Prov	7e-04
TIGR01693	850	TIGR01693, UTase_glnD, [Protein-PII] uridylyltrans	0.002
PRK01759	854	PRK01759, glnD, PII uridylyl-transferase; Provisio	0.002
pfam13291	77	pfam13291, ACT_4, ACT domain	0.002
PRK05007	884	PRK05007, PRK05007, PII uridylyl-transferase; Prov	0.002
cd04927	76	cd04927, ACT_ACR-like_2, Second ACT domain, of a n	0.002
PRK03381	774	PRK03381, PRK03381, PII uridylyl-transferase; Prov	0.004

>gnl|CDD|153167 cd04895, ACT_ACR_1, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  131 bits (332), Expect = 5e-39
 Identities = 54/72 (75%), Positives = 58/72 (80%)

Query: 35  CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKT 94
           CT+VKVDS  KPGILLE VQVL+DLDL ITKAYISSDGGWFMDVFHV DQ G K+TD   
Sbjct: 1   CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTDQLGNKLTDDSL 60

Query: 95  IDYIEKALGPKG 106
           I YIEK+LG   
Sbjct: 61  IAYIEKSLGTSR 72

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|153197 cd04925, ACT_ACR_2, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score =  112 bits (282), Expect = 1e-31
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           TAIEL G DRPGLLSE+ AVLA+L  NV  A  WTHN R+ACV+YV D+ T   + D  R
Sbjct: 1   TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIR 60

Query: 189 LSLMEEQLKNILRG 202
           L+ +E++L N+LRG
Sbjct: 61  LASIEDRLDNVLRG 74

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 74

>gnl|CDD|153169 cd04897, ACT_ACR_3, ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 91.7 bits (228), Expect = 1e-23
 Identities = 31/43 (72%), Positives = 35/43 (81%)

Query: 268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQ 310
           YSVV V+CRDR KL+FD+VCTLTDM YVVFHA I +DG  A Q
Sbjct: 1   YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQ 43

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 72.1 bits (178), Expect = 2e-16
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +EL   DRPGLL++++ VLA L  N+ +A++ T   R   V YV D        D  R
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
              +   L   L
Sbjct: 59  QEALRAALGEAL 70

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 71.0 bits (175), Expect = 5e-16
 Identities = 28/67 (41%), Positives = 45/67 (67%), Gaps = 1/67 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TVV+V + ++PG+L ++ +VL+DL L I  A IS+ G   +DVF+V D  G+ + D + I
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL-DPERI 59

Query: 96  DYIEKAL 102
             +E+AL
Sbjct: 60  ARLEEAL 66

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 61.0 bits (149), Expect = 2e-12
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 2/72 (2%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL++I+ VLA+L  N+  A + T   R   V YV D        D  R
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRPL--DPER 58

Query: 189 LSLMEEQLKNIL 200
           ++ +EE L++ L
Sbjct: 59  IARLEEALEDAL 70

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 65.3 bits (160), Expect = 9e-12
 Identities = 32/81 (39%), Positives = 52/81 (64%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++DN +    TV++V+  ++PG+L ++ + LSDL+L I  A+I++ G   +DVF+V
Sbjct: 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYV 889

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
            D  G KIT+      I +AL
Sbjct: 890 TDLFGLKITNEARQAAIRRAL 910

Length = 931

>gnl|CDD|235342 PRK05092, PRK05092, PII uridylyl-transferase; Provisional

 Score = 61.0 bits (149), Expect = 2e-10
 Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 23/166 (13%)

Query: 67  YISSDGGWFMDVFHVIDQQGKKITDGKTI----DYIEKALGPKGHITA----GAKTWPSK 118
           + ++DG   +D F + D  G+   + + +      IE AL   G +        +T P K
Sbjct: 766 FTTTDG-RALDTFWIQDAFGRDEDEPRRLARLAKAIEDAL--SGEVRLPEALAKRTKPKK 822

Query: 119 QVGVHSV-----------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR 167
           +     V              T IE+ GRDRPGLL +++  L++L  N+A+A + T+  R
Sbjct: 823 RARAFHVPPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGER 882

Query: 168 IACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVAR 213
              V YV  D     + ++ R + +   L   L   + E       
Sbjct: 883 AVDVFYVT-DLFGLKITNEARQAAIRRALLAALAEGEAEARAARPP 927

Length = 931

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 30/149 (20%), Positives = 56/149 (37%), Gaps = 18/149 (12%)

Query: 46  PGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKT----IDYIEK 100
           PG+  +V   L+ L L +  A + ++  G  +D F V D  G      +     +  +  
Sbjct: 679 PGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGLVD 738

Query: 101 ALGPKGHITAGAKTWPSKQVGV-------------HSVGDHTAIELIGRDRPGLLSEISA 147
            L              +++  +              +    T +E+   DRPGLL+ +  
Sbjct: 739 VLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRALDRPGLLARVGR 798

Query: 148 VLANLRFNVAAAEVWTHNRRIACVLYVND 176
            L  L  ++ +A++ T   +   V YV D
Sbjct: 799 TLEELGLSIQSAKITTFGEKAEDVFYVTD 827

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153171 cd04899, ACT_ACR-UUR-like_2, C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 50.9 bits (123), Expect = 9e-09
 Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 1/68 (1%)

Query: 36  TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTI 95
           TV+++ ++++PG+L +V +VL++L L I  A I++ G    DVF+V D  G+   D +  
Sbjct: 1   TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQ 59

Query: 96  DYIEKALG 103
           + +  ALG
Sbjct: 60  EALRAALG 67

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 54.0 bits (130), Expect = 5e-08
 Identities = 26/71 (36%), Positives = 45/71 (63%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++ N++  + T+++V ++++PG+L  V + L +L L I  A I++ G    DVF+V
Sbjct: 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYV 825

Query: 82  IDQQGKKITDG 92
            D  G K+TD 
Sbjct: 826 TDLFGLKLTDE 836

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|153145 cd04873, ACT_UUR-ACR-like, ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQV 311
           +VV V   DR  L+ DI   L D+   +  A IS+ G  A  V
Sbjct: 1   TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDV 43

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 70

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 1/75 (1%)

Query: 126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGD 185
            D T +E+   DRPGLL+ ++ V A+L  ++ +A++ T   R+  V  V  D   +A+  
Sbjct: 789 NDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV-TDADGQALNA 847

Query: 186 QTRLSLMEEQLKNIL 200
           + R SL++  L+ +L
Sbjct: 848 ELRQSLLQRLLEALL 862

Length = 867

>gnl|CDD|153198 cd04926, ACT_ACR_4, C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG 103
           ++ G+L +V +V  +  L +T+A IS+ G   ++VF+V D  G  + D KTI+ + + +G
Sbjct: 10  DRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIG 68

Query: 104 P 104
           P
Sbjct: 69  P 69

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 72

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
           T +E+   DRPGLL+E+   LA+   N+ +    T   +               V D+  
Sbjct: 1   TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKA-------GIVFIVVVVDEED 53

Query: 189 LSLMEEQLKNILR 201
           L    E LK +L 
Sbjct: 54  LEAALEALKKLLG 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 17/142 (11%)

Query: 52  VVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKI-TDGKTIDYIEKALG-----P 104
            V  +  L+L I  A I +S   + +D + V+D  G+ I  +   I+ I + L      P
Sbjct: 721 TVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNP 780

Query: 105 KGHITAGAKTWPSK--------QVGVHS--VGDHTAIELIGRDRPGLLSEISAVLANLRF 154
             + T   +  P +        QV + +      T +E+I  DRPGLL+ I  +      
Sbjct: 781 DDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDL 840

Query: 155 NVAAAEVWTHNRRIACVLYVND 176
           ++  A++ T   R+  V ++ D
Sbjct: 841 SLQNAKIATLGERVEDVFFITD 862

Length = 895

>gnl|CDD|153172 cd04900, ACT_UUR-like_1, ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++PG+   +   L  L L I  A I ++  G+ +D F V+D  G+ I + + +  I +AL
Sbjct: 10  DRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREAL 69

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73

>gnl|CDD|225400 COG2844, GlnD, UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR ++  ++  + TV++V ++++PG+L  +  V +DL L +  A I++ G    DVF V
Sbjct: 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIV 837

Query: 82  IDQQGKKITD 91
            D  G+ +  
Sbjct: 838 TDADGQALNA 847

Length = 867

>gnl|CDD|234709 PRK00275, glnD, PII uridylyl-transferase; Provisional

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 17/70 (24%), Positives = 39/70 (55%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           P + ++ N +    TV+++ + ++PG+L  + ++  + DL +  A I++ G    DVF +
Sbjct: 801 PTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFI 860

Query: 82  IDQQGKKITD 91
            D   + ++D
Sbjct: 861 TDADNQPLSD 870

Length = 895

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG--GWFMDVFHVIDQQG 86
          TV++V   ++PG+L EV   L+D  + I     S+ G     + +  V+D++ 
Sbjct: 1  TVLEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEED 53

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQG 86
          + V   ++PG+L +V+ VL++  + IT     + G G   D+F V+D  G
Sbjct: 1  LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDG 50

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

 Score = 39.6 bits (93), Expect = 8e-05
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR 166
           + + G DRPGLL+++ +VLA    N+ + E  T   
Sbjct: 1   LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGD 36

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60

>gnl|CDD|153148 cd04876, ACT_RelA-SpoT, ACT domain found C-terminal of the RelA/SpoT domains

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA 169
           I +   DRPGLL++I+ V+A  + N+ +    T +  +A
Sbjct: 1   IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLA 39

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes in E. coli, a bifunctional Rel/Spo protein has been discovered in most gram-positive organisms studied so far. These bifunctional Rel/Spo homologs (rsh) appear to modulate (p)ppGpp levels through two distinct active sites that are controlled by a reciprocal regulatory mechanism ensuring inverse coupling of opposing activities. In studies with the Streptococcus equisimilis Rel/Spo homolog, the C-terminal domain appears to be involved in this reciprocal regulation of the two opposing catalytic activities present in the N-terminal domain, ensuring that both synthesis and degradation activities are not coinduced. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71

>gnl|CDD|235101 PRK03059, PRK03059, PII uridylyl-transferase; Provisional

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 16/106 (15%)

Query: 73  GWFMDVFHVIDQQGKKITDGKTIDYIE----KALGPKGHITAGAKTWPSKQVGVHSV--- 125
           G+ +D F V+D   + +     I+ +E    + L  +  +   +K   S+QV    +   
Sbjct: 717 GYALDTFQVLDP-EEDVHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPR 775

Query: 126 --------GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT 163
                   G +  + +   DRPGLL  I+ VLA  R +V  A++ T
Sbjct: 776 VDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINT 821

Length = 856

>gnl|CDD|233534 TIGR01693, UTase_glnD, [Protein-PII] uridylyltransferase

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 29/175 (16%)

Query: 137 DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL 196
           D+PGL ++++  LA L  +V  A+V T    +A   +V  D        +     + + L
Sbjct: 677 DQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLFGSPPAAERVFQELLQGL 736

Query: 197 KNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKP 256
            ++L G   +     AR +                               ++ H  +  P
Sbjct: 737 VDVLAGLAKDPDTISARRA----------------------------RRRRLQHF-AVPP 767

Query: 257 EITVERLEDKGYSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQV 311
            +T+     +  +++ V+  DR  L+  +  TL ++   +  A I++ G  A  V
Sbjct: 768 RVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDV 822

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, Protein interactions]. Length = 850

>gnl|CDD|234980 PRK01759, glnD, PII uridylyl-transferase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 33/139 (23%), Positives = 55/139 (39%), Gaps = 25/139 (17%)

Query: 44  NKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL 102
           ++  + L+VV  +    L I  A I +S  G+ +D F V +  GK +   +    +E+AL
Sbjct: 686 DQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTELNGKLLEFDRR-RQLEQAL 744

Query: 103 GPKGHITAGAKTWPSKQVGVH------------------SVGDHTAIELIGRDRPGLLSE 144
                  A       K                          + T +EL   DR GLL++
Sbjct: 745 -----TKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGLLAQ 799

Query: 145 ISAVLANLRFNVAAAEVWT 163
           +S V + L  N+  A++ T
Sbjct: 800 VSQVFSELNLNLLNAKITT 818

Length = 854

>gnl|CDD|222030 pfam13291, ACT_4, ACT domain

 Score = 36.3 bits (85), Expect = 0.002
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACV---LYVND 176
             +E+   DRPGLL++I+ V++N + N+ +    + +  IA +   L V D
Sbjct: 5   ADLEIEAIDRPGLLADITTVISNEKANILSVNAESKDNGIATINLTLEVKD 55

ACT domains bind to amino acids and regulate associated enzyme domains. These ACT domains are found at the C-terminus of the RelA protein. Length = 77

>gnl|CDD|235329 PRK05007, PRK05007, PII uridylyl-transferase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 33/137 (24%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 42  SVNKPGILLEVVQVLSDLDLIITKAYI-SSDGGWFMDVFHVIDQQGKKITDGK---TIDY 97
           S ++P +   V   L   +L +  A I +S  G  MD F V++  G  ++  +       
Sbjct: 708 SPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLEPDGSPLSQDRHQVIRKA 767

Query: 98  IEKALGPKGHITAGAKTWPSK--------QVG---VHSVGDHTAIELIGRDRPGLLSEIS 146
           +E+AL          +  P+K        +V     H+    + +ELI  D+PGLL+ + 
Sbjct: 768 LEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDR-RSYMELIALDQPGLLARVG 826

Query: 147 AVLANLRFNVAAAEVWT 163
            + A+L  ++  A + T
Sbjct: 827 KIFADLGISLHGARITT 843

Length = 884

>gnl|CDD|153199 cd04927, ACT_ACR-like_2, Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQ---GKKITDG 92
           ++K+   ++ G+L +V +VL +L+L I +  +S+   G  +D+F + D +     K    
Sbjct: 2   LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDARELLHTKKRRE 61

Query: 93  KTIDYIEKALGPKG 106
           +T DY+   LG   
Sbjct: 62  ETYDYLRAVLGDSM 75

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 76

>gnl|CDD|235123 PRK03381, PRK03381, PII uridylyl-transferase; Provisional

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 22  PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV 81
           PPR    + + P+ TV++V + ++PG+L  + + L    + +  A +++ G   +DVF+V
Sbjct: 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYV 753

Query: 82  IDQQGKKITDGKTIDYIEKAL 102
               G  + D +    +E+A+
Sbjct: 754 TGAAGGPLADAR--AAVEQAV 772

Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
PRK01759	854	glnD PII uridylyl-transferase; Provisional	100.0
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK00275	895	glnD PII uridylyl-transferase; Provisional	100.0
PRK05007	884	PII uridylyl-transferase; Provisional	100.0
PRK04374	869	PII uridylyl-transferase; Provisional	99.97
PRK03059	856	PII uridylyl-transferase; Provisional	99.97
PRK05092	931	PII uridylyl-transferase; Provisional	99.97
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.97
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.96
TIGR01693	850	UTase_glnD [Protein-PII] uridylyltransferase. This	99.96
PRK00275	895	glnD PII uridylyl-transferase; Provisional	99.95
PRK04374	869	PII uridylyl-transferase; Provisional	99.95
PRK03059	856	PII uridylyl-transferase; Provisional	99.95
COG2844	867	GlnD UTP:GlnB (protein PII) uridylyltransferase [P	99.95
PRK03381	774	PII uridylyl-transferase; Provisional	99.95
PRK05092	931	PII uridylyl-transferase; Provisional	99.95
PRK03381	774	PII uridylyl-transferase; Provisional	99.94
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.83
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.79
cd04897	75	ACT_ACR_3 ACT domain-containing protein which is c	99.77
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.75
cd04895	72	ACT_ACR_1 ACT domain-containing protein which is c	99.73
cd04896	75	ACT_ACR-like_3 ACT domain-containing protein which	99.7
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.68
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.66
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.62
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.59
cd04900	73	ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1,	99.58
cd04925	74	ACT_ACR_2 ACT domain-containing protein which is c	99.54
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.52
PRK11589	190	gcvR glycine cleavage system transcriptional repre	99.51
cd04927	76	ACT_ACR-like_2 Second ACT domain, of a novel type	99.5
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.48
cd04928	68	ACT_TyrKc Uncharacterized, N-terminal ACT domain o	99.45
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.4
cd04926	72	ACT_ACR_4 C-terminal ACT domain, of a novel type o	99.37
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.33
PRK00227	693	glnD PII uridylyl-transferase; Provisional	99.33
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.28
cd04899	70	ACT_ACR-UUR-like_2 C-terminal ACT domains of the b	99.17
COG2716	176	GcvR Glycine cleavage system regulatory protein [A	99.15
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	99.03
cd04873	70	ACT_UUR-ACR-like ACT domains of the bacterial sign	98.87
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.73
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	98.68
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	98.64
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.53
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.5
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.47
COG4747	142	ACT domain-containing protein [General function pr	98.46
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	98.42
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	98.37
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	98.34
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.18
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.1
PRK00194	90	hypothetical protein; Validated	98.08
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	98.05
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	98.05
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	98.03
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	98.02
PRK00194	90	hypothetical protein; Validated	98.01
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	97.98
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.97
cd04894	69	ACT_ACR-like_1 ACT domain-containing protein which	97.85
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.82
PF13291	80	ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.	97.76
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.72
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.69
COG4747	142	ACT domain-containing protein [General function pr	97.68
COG3830	90	ACT domain-containing protein [Signal transduction	97.67
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.59
cd04887	74	ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te	97.55
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	97.54
PRK06027	286	purU formyltetrahydrofolate deformylase; Reviewed	97.49
COG3830	90	ACT domain-containing protein [Signal transduction	97.45
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	97.37
TIGR00655	280	PurU formyltetrahydrofolate deformylase. This mode	97.35
PRK13011	286	formyltetrahydrofolate deformylase; Reviewed	97.31
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.28
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	97.28
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.22
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	97.1
PRK07431	587	aspartate kinase; Provisional	97.04
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	97.03
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	97.02
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	97.01
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	97.0
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	96.99
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.98
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.95
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.92
PRK07431	587	aspartate kinase; Provisional	96.87
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	96.85
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	96.83
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.8
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.79
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.75
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.74
COG0788	287	PurU Formyltetrahydrofolate hydrolase [Nucleotide	96.71
cd04879	71	ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te	96.7
cd04877	74	ACT_TyrR N-terminal ACT domain of the TyrR protein	96.67
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.64
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	96.59
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.59
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	96.58
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	96.57
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.56
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	96.55
cd04874	72	ACT_Af1403 N-terminal ACT domain of the yet unchar	96.54
cd04901	69	ACT_3PGDH C-terminal ACT (regulatory) domain of D-	96.49
PRK08577	136	hypothetical protein; Provisional	96.47
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.41
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	96.36
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	96.34
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.28
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	96.27
cd04881	79	ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin	96.26
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	96.23
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.22
PRK04435	147	hypothetical protein; Provisional	96.22
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	96.19
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	96.18
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	96.17
cd04878	72	ACT_AHAS N-terminal ACT domain of the Escherichia	96.13
cd04884	72	ACT_CBS C-terminal ACT domain of the cystathionine	96.11
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	96.1
PRK08577	136	hypothetical protein; Provisional	96.09
cd04902	73	ACT_3PGDH-xct C-terminal ACT (regulatory) domain o	96.05
PRK04435	147	hypothetical protein; Provisional	95.76
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	95.72
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	95.71
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	95.71
cd02116	60	ACT ACT domains are commonly involved in specifica	95.67
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.64
cd04876	71	ACT_RelA-SpoT ACT domain found C-terminal of the R	95.53
cd04905	80	ACT_CM-PDT C-terminal ACT domain of the bifunction	95.5
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	95.49
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	95.47
PRK07334	403	threonine dehydratase; Provisional	95.47
cd02116	60	ACT ACT domains are commonly involved in specifica	95.38
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	95.22
PRK06635	404	aspartate kinase; Reviewed	95.14
PRK07334	403	threonine dehydratase; Provisional	95.12
cd04898	77	ACT_ACR-like_4 ACT domain-containing protein which	95.03
PRK08210	403	aspartate kinase I; Reviewed	95.02
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	94.9
PRK06635	404	aspartate kinase; Reviewed	94.81
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	94.62
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	94.43
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.3
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.24
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	94.19
cd04885	68	ACT_ThrD-I Tandem C-terminal ACT domains of threon	94.12
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	94.1
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	94.07
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.89
PRK06291	465	aspartate kinase; Provisional	93.75
PF13710	63	ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.	93.65
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	93.47
COG1707	218	ACT domain-containing protein [General function pr	93.38
cd04931	90	ACT_PAH ACT domain of the nonheme iron-dependent a	93.25
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	93.15
PRK09034	454	aspartate kinase; Reviewed	93.14
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	92.99
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.98
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	92.8
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	92.79
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	92.62
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	92.58
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	92.52
PRK06291	465	aspartate kinase; Provisional	92.49
cd04871	84	ACT_PSP_2 ACT domains found N-terminal of phosphos	92.08
COG1707	218	ACT domain-containing protein [General function pr	92.0
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	91.89
PRK08210	403	aspartate kinase I; Reviewed	91.84
PRK06382	406	threonine dehydratase; Provisional	91.75
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	91.57
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	90.67
PRK09084	448	aspartate kinase III; Validated	90.61
PRK06545	359	prephenate dehydrogenase; Validated	90.24
PRK11899	279	prephenate dehydratase; Provisional	90.15
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	90.01
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	89.82
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	89.76
PRK09181	475	aspartate kinase; Validated	89.68
cd04906	85	ACT_ThrD-I_1 First of two tandem C-terminal ACT do	89.6
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	89.57
TIGR00719	208	sda_beta L-serine dehydratase, iron-sulfur-depende	89.32
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	89.16
PLN02551	521	aspartokinase	88.89
PF05088	1528	Bac_GDH: Bacterial NAD-glutamate dehydrogenase	88.85
cd04904	74	ACT_AAAH ACT domain of the nonheme iron-dependent,	88.79
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	88.67
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	88.63
PRK09034	454	aspartate kinase; Reviewed	88.59
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	88.1
PRK06382	406	threonine dehydratase; Provisional	88.09
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	88.04
PRK11899	279	prephenate dehydratase; Provisional	88.01
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	87.91
PRK08198	404	threonine dehydratase; Provisional	87.69
cd04929	74	ACT_TPH ACT domain of the nonheme iron-dependent a	87.45
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	86.84
PRK08818	370	prephenate dehydrogenase; Provisional	86.42
COG0077	279	PheA Prephenate dehydratase [Amino acid transport	86.42
PRK06545	359	prephenate dehydrogenase; Validated	86.39
PRK12483	521	threonine dehydratase; Reviewed	86.32
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	86.27
PRK08198	404	threonine dehydratase; Provisional	86.21
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	86.05
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	86.02
PLN02551	521	aspartokinase	85.78
PRK06349	426	homoserine dehydrogenase; Provisional	85.4
PRK09084	448	aspartate kinase III; Validated	85.21
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	85.04
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	83.41
PRK08818	370	prephenate dehydrogenase; Provisional	83.23
KOG2663	309	consensus Acetolactate synthase, small subunit [Am	83.02
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	82.55
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	82.07
cd04930	115	ACT_TH ACT domain of the nonheme iron-dependent ar	82.07
PRK09181	475	aspartate kinase; Validated	81.0
COG2150	167	Predicted regulator of amino acid metabolism, cont	80.82
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	80.11

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=1.2e-31  Score=278.87  Aligned_cols=198  Identities=20%  Similarity=0.274  Sum_probs=169.7

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC-CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCE
Q 021245            1 MANAYWPYFDPE----YESLSLRIN-PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGW   74 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~-~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~   74 (315)
                      |+++||.+++++    |++++.... +|.|.+++....++++|+|+++||||||++|+++|+.+|+||++|+|+| .+|+
T Consensus       638 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~  717 (854)
T PRK01759        638 CPEDYFLRNTPKQIAWHALLLLDFRGDLLVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGY  717 (854)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcCCCCEEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCE
Confidence            689999999999    999997764 6788899999999999999999999999999999999999999999998 8999


Q ss_pred             EEEEEEEEcCCCCCCCChhHH----HHHHHHHCCCCCCCC---------CcccCCceeeeecCCCceEEEEEEeCCcccH
Q 021245           75 FMDVFHVIDQQGKKITDGKTI----DYIEKALGPKGHITA---------GAKTWPSKQVGVHSVGDHTAIELIGRDRPGL  141 (315)
Q Consensus        75 ~~d~f~v~~~~g~~~~~~~~~----~~l~~~L~~~~~~~~---------~~~~~~~~~v~~~~~~~~t~i~i~~~DrpgL  141 (315)
                      ++|+|+|.+.+|.+++ ++.+    +.|+++|.+......         .+..++++.++++.+..+|+|+|.++|||||
T Consensus       718 alD~F~V~d~~g~~~~-~~~~~~l~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~V~~dn~~s~~~T~iev~a~DrpGL  796 (854)
T PRK01759        718 VLDSFIVTELNGKLLE-FDRRRQLEQALTKALNTNKLKKLNLEENHKLQHFHVKTEVRFLNEEKQEQTEMELFALDRAGL  796 (854)
T ss_pred             EEEEEEEeCCCCCCCC-HHHHHHHHHHHHHHHcCCCCcchhccccccccCCCCCCEEEEccCCCCCeEEEEEEeCCchHH
Confidence            9999999999998875 3344    444455544332111         0123456677788889999999999999999


Q ss_pred             HHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          142 LSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       142 l~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      |++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++ +.|+++|.++|+
T Consensus       797 L~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~-~~g~~l~~~~~-~~l~~~L~~~l~  854 (854)
T PRK01759        797 LAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN-QQGQALDEEER-KALKSRLLSNLS  854 (854)
T ss_pred             HHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhC
Confidence            99999999999999999999999999999999999 89999887655 899999988763

>PRK01759 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=5e-32  Score=281.66  Aligned_cols=164  Identities=15%  Similarity=0.201  Sum_probs=143.3

Q ss_pred             ceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHH
Q 021245          117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQ  195 (315)
Q Consensus       117 ~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~  195 (315)
                      .+.++++++.++|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|.++|+|+|++ .+|.++. ++++++|++.
T Consensus       666 ~V~i~~~~~~~~t~V~V~~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d-~~g~~~~-~~~~~~l~~~  743 (854)
T PRK01759        666 LVKISNRFSRGGTEIFIYCQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE-LNGKLLE-FDRRRQLEQA  743 (854)
T ss_pred             EEEEEecCCCCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC-CCCCCCC-HHHHHHHHHH
Confidence            34566788889999999999999999999999999999999999998 5799999999999 8898875 5788999999


Q ss_pred             HHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe
Q 021245          196 LKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC  275 (315)
Q Consensus       196 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a  275 (315)
                      |.++|+++..   .              ..++.+   . +  .          .++|.+||+|.|+|+.|.+||+|||.|
T Consensus       744 L~~aL~~~~~---~--------------~~~~~~---~-~--~----------~~~~~~~~~V~~dn~~s~~~T~iev~a  790 (854)
T PRK01759        744 LTKALNTNKL---K--------------KLNLEE---N-H--K----------LQHFHVKTEVRFLNEEKQEQTEMELFA  790 (854)
T ss_pred             HHHHHcCCCC---c--------------chhccc---c-c--c----------ccCCCCCCEEEEccCCCCCeEEEEEEe
Confidence            9999987653   0              100100   0 0  0          167889999999999999999999999


Q ss_pred             CCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       276 ~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      .|||||||+|+++|.++|++|++|||+|.|++|+|+|||+
T Consensus       791 ~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~  830 (854)
T PRK01759        791 LDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILT  830 (854)
T ss_pred             CCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEE
Confidence            9999999999999999999999999999999999999994

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=2.2e-31  Score=277.74  Aligned_cols=200  Identities=19%  Similarity=0.264  Sum_probs=171.7

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~--~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (315)
                      |+++||.+++++    |++++.++  .+|.|.+++....++++|+|+++||||||++||++|+.+|+||++|+|+| .+|
T Consensus       661 ~~~~yf~~~~~~~I~~h~~~~~~~~~~~p~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg  740 (884)
T PRK05007        661 CRADYFLRHTPNQLAWHARHLLQHDLDKPLVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDG  740 (884)
T ss_pred             CChHHhcCCCHHHHHHHHHHHHhccCCCCeEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCC
Confidence            689999999999    99999886  36788899999999999999999999999999999999999999999997 678


Q ss_pred             EEEEEEEEEcCCCCCCCCh---hHHHHHHHHHCCCCCCCC-C---------cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245           74 WFMDVFHVIDQQGKKITDG---KTIDYIEKALGPKGHITA-G---------AKTWPSKQVGVHSVGDHTAIELIGRDRPG  140 (315)
Q Consensus        74 ~~~d~f~v~~~~g~~~~~~---~~~~~l~~~L~~~~~~~~-~---------~~~~~~~~v~~~~~~~~t~i~i~~~Drpg  140 (315)
                      +++|+|+|++.+|.+++++   ++.+.|+++|.+...... .         +..++.+.++++.++.+|+|+|.|+||||
T Consensus       741 ~alD~F~V~d~~g~~~~~~~~~~I~~~L~~aL~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~TvlEV~a~DRpG  820 (884)
T PRK05007        741 MAMDTFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQPPKPRRLPAKLRHFNVPTEVSFLPTHTDRRSYMELIALDQPG  820 (884)
T ss_pred             eEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCcccccccccccCCCCCCCEEEEccCCCCCeEEEEEEeCCchH
Confidence            9999999999999887532   245555556654421110 0         12345566778889999999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      ||++|+++|.++|++|+.|+|.|.|+++.|+|||++ .+|.+++ +++.+.|+++|.++|+.
T Consensus       821 LL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~-~~g~~l~-~~~~~~l~~~L~~~l~~  880 (884)
T PRK05007        821 LLARVGKIFADLGISLHGARITTIGERVEDLFILAT-ADRRALN-EELQQELRQRLTEALNP  880 (884)
T ss_pred             HHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc-CCCCcCC-HHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999 8888887 67889999999999864

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=100.00  E-value=4.3e-31  Score=275.64  Aligned_cols=203  Identities=18%  Similarity=0.290  Sum_probs=170.0

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCC---CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245            1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSC---PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~---~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      |+++||.+|+++    |++++.++.   .|.+.+.+...   .+.++|+|+++|+||||++||++|+.+|+||++|+|+|
T Consensus       660 ~~~~Y~l~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~T  739 (895)
T PRK00275        660 LGDDYFLRHTAGDIAWHTEAILQHPDDGGPLVLIKETTQREFEGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIIT  739 (895)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhcccCCCCeEEEEecCccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEE
Confidence            689999999999    999998863   56666777665   58999999999999999999999999999999999986


Q ss_pred             -eCCEEEEEEEEEcCCCCCCCC-hhHHH----HHHHHHCCCCCCCCC-----------cccCCceeeeecCCCceEEEEE
Q 021245           71 -DGGWFMDVFHVIDQQGKKITD-GKTID----YIEKALGPKGHITAG-----------AKTWPSKQVGVHSVGDHTAIEL  133 (315)
Q Consensus        71 -~~g~~~d~f~v~~~~g~~~~~-~~~~~----~l~~~L~~~~~~~~~-----------~~~~~~~~v~~~~~~~~t~i~i  133 (315)
                       .+|+++|+|+|.+++|.++.. ++.++    .|+++|.+....+..           +..++.+.++++.+.++|+|+|
T Consensus       740 t~dg~alD~F~V~d~~g~~~~~~~~r~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~T~i~V  819 (895)
T PRK00275        740 SSSQFTLDTYIVLDDDGEPIGDNPARIEQIREGLTEALRNPDDYPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEI  819 (895)
T ss_pred             cCCCeEEEEEEEeCCCCCCccchHHHHHHHHHHHHHHHcCCCccchhhhhhhhhhccCCCCCCEEEEEECCCCCeEEEEE
Confidence             789999999999999987543 33444    455555544321110           1223445566788889999999


Q ss_pred             EeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245          134 IGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (315)
Q Consensus       134 ~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  204 (315)
                      +++||||||++|+++|+.+|+||++|+|+|.++++.|+|+|++ .+|.++.+++++++|+++|.++|.+..
T Consensus       820 ~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d-~~g~~l~~~~~~~~l~~~L~~~L~~~~  889 (895)
T PRK00275        820 IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD-ADNQPLSDPQLCSRLQDAICEQLDARN  889 (895)
T ss_pred             EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC-CCCCCCCCHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999 899998877889999999999996543

>PRK05007 PII uridylyl-transferase; Provisional

Probab=100.00  E-value=8.7e-32  Score=280.71  Aligned_cols=165  Identities=17%  Similarity=0.200  Sum_probs=143.2

Q ss_pred             ceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHH
Q 021245          117 SKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQ  195 (315)
Q Consensus       117 ~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~  195 (315)
                      .+.++++++.++++|+|+++||||||++|+++|+.+|+||++|+|+|.+ |.+.|+|+|++ .+|.++. ++++++|++.
T Consensus       690 ~V~i~~~~~~~~t~V~V~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d-~~g~~~~-~~~~~~I~~~  767 (884)
T PRK05007        690 LVLLSKQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE-PDGSPLS-QDRHQVIRKA  767 (884)
T ss_pred             eEEEEecCCCCeEEEEEEecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC-CCCCCCC-HHHHHHHHHH
Confidence            3456677888999999999999999999999999999999999999986 69999999999 8888874 5788999999


Q ss_pred             HHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe
Q 021245          196 LKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC  275 (315)
Q Consensus       196 L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a  275 (315)
                      |.++|.+...   ..           ...++..      +  .          .+++.+||+|.|+|+.|+.||+|||.|
T Consensus       768 L~~aL~~~~~---~~-----------~~~~~~~------~--~----------~~~~~~~~~V~~d~~~s~~~TvlEV~a  815 (884)
T PRK05007        768 LEQALTQSSP---QP-----------PKPRRLP------A--K----------LRHFNVPTEVSFLPTHTDRRSYMELIA  815 (884)
T ss_pred             HHHHHcCCCC---Cc-----------ccccccc------c--c----------cCCCCCCCEEEEccCCCCCeEEEEEEe
Confidence            9999987653   00           0111110      0  0          167889999999999999999999999


Q ss_pred             CCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          276 RDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       276 ~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      .|||||||+|+++|.++|++|++|||+|.|++|+|+|||+
T Consensus       816 ~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~  855 (884)
T PRK05007        816 LDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA  855 (884)
T ss_pred             CCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE
Confidence            9999999999999999999999999999999999999994

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=1.2e-29  Score=263.34  Aligned_cols=199  Identities=20%  Similarity=0.261  Sum_probs=165.2

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC--CCeEEEec-CCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eC
Q 021245            1 MANAYWPYFDPE----YESLSLRIN--PPRASVDN-SSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~--~~~v~i~~-~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~   72 (315)
                      |+++||.+++++    |++++.++.  .|.+.+.. ....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus       649 l~~~Y~~~~~~~~I~~h~~~~~~~~~~~~~v~~~~~~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~  728 (869)
T PRK04374        649 MPDENFLRFRPEQLAWQAASLIEVEIGQTLVKARRAVPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPH  728 (869)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcCCCCCeEEEeeeccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCC
Confidence            789999999999    999998753  45555444 67779999999999999999999999999999999999997 89


Q ss_pred             CEEEEEEEEEcCCCCCCC-ChhHHHHHHHHHCCCCCCCC------C-----cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245           73 GWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHITA------G-----AKTWPSKQVGVHSVGDHTAIELIGRDRPG  140 (315)
Q Consensus        73 g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~~~~------~-----~~~~~~~~v~~~~~~~~t~i~i~~~Drpg  140 (315)
                      |+++|+|+|.+++|.... ...+.+.|+++|.+......      .     +..++.+.++++.+.+.|+|+|++.||||
T Consensus       729 g~~ld~f~V~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpG  808 (869)
T PRK04374        729 DAIFDVFEVLPQDTYADGDPQRLAAALRQVLAGDLQKVRPARRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVAPDRPG  808 (869)
T ss_pred             CEEEEEEEEeCCCCCChHHHHHHHHHHHHHHcCCCCccccccccCcccccCCCCCCeEEEeecCCCCeEEEEEEeCCcCc
Confidence            999999999998876321 12356666777766432111      0     12334455667788899999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      ||++|+++|+.+|+||++|+|+|.++++.|+|+|++ ++|.++.++++ +.|+++|.++|+
T Consensus       809 LLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d-~~g~~~~~~~~-~~l~~~L~~~l~  867 (869)
T PRK04374        809 LLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD-EHDRPLSESAR-QALRDALCACLD  867 (869)
T ss_pred             HHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcCChHHH-HHHHHHHHHHhc
Confidence            999999999999999999999999999999999999 88888766655 899999998874

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=2e-29  Score=262.15  Aligned_cols=196  Identities=19%  Similarity=0.279  Sum_probs=161.9

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eC
Q 021245            1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DG   72 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~   72 (315)
                      |+++||.+++++    |++++.++.   .|.|.+......+.++|+|+++|+||||++||++|+.+|+||++|+|+| .+
T Consensus       637 ~~~~Yf~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~  716 (856)
T PRK03059        637 LDVGYFLRHDAADIAWHTRHLYRHVDTDTPIVRARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRH  716 (856)
T ss_pred             CChHHhccCCHHHHHHHHHHHHhcccCCCCeEEEEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCC
Confidence            689999999999    999998863   5766688888889999999999999999999999999999999999986 89


Q ss_pred             CEEEEEEEEEcCCCCCCCChh----HHHHHHHHHCCCCCCCCC-----------cccCCceeeeecCCCceEEEEEEeCC
Q 021245           73 GWFMDVFHVIDQQGKKITDGK----TIDYIEKALGPKGHITAG-----------AKTWPSKQVGVHSVGDHTAIELIGRD  137 (315)
Q Consensus        73 g~~~d~f~v~~~~g~~~~~~~----~~~~l~~~L~~~~~~~~~-----------~~~~~~~~v~~~~~~~~t~i~i~~~D  137 (315)
                      |+++|+|+|.+++|. ...++    +.+.|+++|.+....+..           +..++.+.++++.+.++|+|+|+++|
T Consensus       717 g~~ld~f~V~~~~~~-~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~T~i~V~a~D  795 (856)
T PRK03059        717 GYALDTFQVLDPEED-VHYRDIINLVEHELAERLAEQAPLPEPSKGRLSRQVKHFPITPRVDLRPDERGQYYILSVSAND  795 (856)
T ss_pred             CeEEEEEEEeCCCCC-CChHHHHHHHHHHHHHHHcCCCCcchhhcccccccccCCCCCceEEEEEcCCCCEEEEEEEeCC
Confidence            999999999998777 33333    444555566554321110           11223345566777899999999999


Q ss_pred             cccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          138 RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       138 rpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      |||||++|+++|+.+|+||++|+|+|.++++.|+|+|++ ++   +.+++++++|++.|.++|+
T Consensus       796 rpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~~-~~---~~~~~~~~~l~~~L~~~L~  855 (856)
T PRK03059        796 RPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLIDG-SG---LSDNRLQIQLETELLDALA  855 (856)
T ss_pred             cchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEcC-CC---CCCHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999976 33   4467789999999988774

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.97  E-value=5.1e-29  Score=262.02  Aligned_cols=203  Identities=24%  Similarity=0.349  Sum_probs=172.6

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC----CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e
Q 021245            1 MANAYWPYFDPE----YESLSLRIN----PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D   71 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~----~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~   71 (315)
                      |+++||.+|+++    |++++.++.    ++.|.+.+....+.++|+|+++|+||||++||++|+.+|+||++|+|+| .
T Consensus       690 ~~~~yf~~~~~~~i~~h~~~~~~~~~~~~~~~v~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~  769 (931)
T PRK05092        690 HYPAYWLAVDLDTQARHARFIRDADDAGRPLATEVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTT  769 (931)
T ss_pred             CCcHHhcCCCHHHHHHHHHHHHhccccCCCcEEEEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEec
Confidence            689999999999    999998863    3588889888889999999999999999999999999999999999998 8


Q ss_pred             CCEEEEEEEEEcCCCCCCCChhHHHHHHH----HHCCCCCCCC-------C------cccCCceeeeecCCCceEEEEEE
Q 021245           72 GGWFMDVFHVIDQQGKKITDGKTIDYIEK----ALGPKGHITA-------G------AKTWPSKQVGVHSVGDHTAIELI  134 (315)
Q Consensus        72 ~g~~~d~f~v~~~~g~~~~~~~~~~~l~~----~L~~~~~~~~-------~------~~~~~~~~v~~~~~~~~t~i~i~  134 (315)
                      +|+++|+|+|++++|.+..+++..++|++    +|.+....+.       .      +..++.+.++++.+.++|+|+|+
T Consensus       770 dg~alD~F~V~~~~g~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~~~V~~~~~~s~~~t~i~I~  849 (931)
T PRK05092        770 DGRALDTFWIQDAFGRDEDEPRRLARLAKAIEDALSGEVRLPEALAKRTKPKKRARAFHVPPRVTIDNEASNRFTVIEVN  849 (931)
T ss_pred             CCeEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHcCCCCCccccccccCccccccCCCCCCEEEEeeCCCCCeEEEEEE
Confidence            99999999999988877655544555544    4433221111       0      12234556777888899999999


Q ss_pred             eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245          135 GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (315)
Q Consensus       135 ~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  204 (315)
                      ++||||||++|+++|+++|+||.+|+|.|.++++.|+|+|++ .+|.++.++++++.|+++|.++|.+..
T Consensus       850 ~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d-~~g~~i~~~~~~~~l~~~L~~~L~~~~  918 (931)
T PRK05092        850 GRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD-LFGLKITNEARQAAIRRALLAALAEGE  918 (931)
T ss_pred             ECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC-CCCCcCCCHHHHHHHHHHHHHHhcCcc
Confidence            999999999999999999999999999999999999999999 889998888888999999999997654

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.97  E-value=4e-29  Score=261.10  Aligned_cols=198  Identities=21%  Similarity=0.256  Sum_probs=169.3

Q ss_pred             CCCCCCCCCChH----HHHHHhhcC---CCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-eeC
Q 021245            1 MANAYWPYFDPE----YESLSLRIN---PPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SDG   72 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~~   72 (315)
                      |+++||.+|+++    |++++.++.   .|.|.+.+....+.++|+|+++||||||++||++|+.+|+||++|+|+ |.+
T Consensus       627 ~~~~y~~~~~~~~I~~h~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~  706 (850)
T TIGR01693       627 AYDDYFLRFTHKEIAWHAESLRRALSSGGPLALIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKD  706 (850)
T ss_pred             CCchhhcCCCHHHHHHHHHHHHhcccCCCCEEEEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecC
Confidence            689999999999    999999863   578888886668999999999999999999999999999999999999 589


Q ss_pred             CEEEEEEEEEcCCCCCCCChhHHH----HHHHHHCCCCCCCCC-------------cccCCceeeeecCCCceEEEEEEe
Q 021245           73 GWFMDVFHVIDQQGKKITDGKTID----YIEKALGPKGHITAG-------------AKTWPSKQVGVHSVGDHTAIELIG  135 (315)
Q Consensus        73 g~~~d~f~v~~~~g~~~~~~~~~~----~l~~~L~~~~~~~~~-------------~~~~~~~~v~~~~~~~~t~i~i~~  135 (315)
                      |+++|+|+|++.+|.++.+++..+    .|+++|.+....+..             +..++.+.++++.++.+|.|+|.|
T Consensus       707 g~~lD~F~V~~~~g~~~~~~~~~~~i~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~d~~~s~~~t~~~v~~  786 (850)
T TIGR01693       707 GVALDTFVVQDLFGSPPAAERVFQELLQGLVDVLAGLAKDPDTISARRARRRRLQHFAVPPRVTILNTASRKATIMEVRA  786 (850)
T ss_pred             CEEEEEEEEECCCCCCCCcHHHHHHHHHHHHHHHcCCCccccccccccCCcccccCCCCCCeEEEccCCCCCeEEEEEEE
Confidence            999999999999998887665444    445555543321110             123345667788889999999999


Q ss_pred             CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          136 RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       136 ~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      .|||||+++|+++|+++|+||.+|+|.|.++++.|+|+|++ ..|.|+.+ ++++.|+++|.++|
T Consensus       787 ~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~-~~g~~~~~-~~~~~l~~~L~~~l  849 (850)
T TIGR01693       787 LDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD-LFGLKLTD-EEEQRLLEVLAASV  849 (850)
T ss_pred             CCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC-CCCCCCCH-HHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999 88889876 68889999998776

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=7.7e-29  Score=246.46  Aligned_cols=161  Identities=18%  Similarity=0.262  Sum_probs=138.7

Q ss_pred             eecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          121 GVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       121 ~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ...+..+.++|+|+++|+|.||+.+++.++..|.||++|+|+|. +|+++|+|+|++ ++|.++. +.+...++..|.++
T Consensus       677 ~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~-~~g~~~~-~dr~~~~~~~l~~~  754 (867)
T COG2844         677 SVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE-PDGFPVE-EDRRAALRGELIEA  754 (867)
T ss_pred             eecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec-CCCCccc-hhHHHHHHHHHHHH
Confidence            34455588999999999999999999999999999999999987 588999999999 8998876 66778888888888


Q ss_pred             HcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCC
Q 021245          200 LRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRA  279 (315)
Q Consensus       200 L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRp  279 (315)
                      +.....   .           ....+|.+++                  .++|.++|+|+|.|+.+..+|++||+|.|||
T Consensus       755 l~s~~~---~-----------~~~~~r~~r~------------------~~~f~i~p~v~i~~t~~~~~t~lEv~alDRp  802 (867)
T COG2844         755 LLSGKA---Q-----------PPRRRRIPRK------------------LRHFPIPPRVTILPTASNDKTVLEVRALDRP  802 (867)
T ss_pred             HhcCCC---C-----------CccccccCcc------------------cceeccCCceeeccccCCCceEEEEEeCCcc
Confidence            865443   0           0112222111                  2789999999999999999999999999999


Q ss_pred             chHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          280 KLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       280 GLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      |||++++.+|++++++|++|||+|+||+|+|+|||.
T Consensus       803 GLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt  838 (867)
T COG2844         803 GLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVT  838 (867)
T ss_pred             cHHHHHHHHHHhcccceeeeeeccccccceeEEEEe
Confidence            999999999999999999999999999999999984

>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase

Probab=99.96  E-value=2.8e-28  Score=254.77  Aligned_cols=167  Identities=19%  Similarity=0.241  Sum_probs=141.5

Q ss_pred             eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .+++....+.|+|+|+++||||||++|+++|+.+|+||++|+|+| .+|+++|+|+|++ .+|.++.+++++++|++.|.
T Consensus       659 ~~~~~~~~~~t~i~V~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~-~~g~~~~~~~~~~~i~~~L~  737 (850)
T TIGR01693       659 LIDGTRPSGGTEVFIYAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQD-LFGSPPAAERVFQELLQGLV  737 (850)
T ss_pred             EEeccCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEEC-CCCCCCCcHHHHHHHHHHHH
Confidence            344545579999999999999999999999999999999999995 4799999999999 88888877778999999999


Q ss_pred             HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC
Q 021245          198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD  277 (315)
Q Consensus       198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D  277 (315)
                      ++|.+...   .              +..+.++....+  .          .+++.+||+|.|+|+.|++||+++|.|.|
T Consensus       738 ~~L~~~~~---~--------------~~~~~~~~~~~~--~----------~~~~~~~~~V~~d~~~s~~~t~~~v~~~D  788 (850)
T TIGR01693       738 DVLAGLAK---D--------------PDTISARRARRR--R----------LQHFAVPPRVTILNTASRKATIMEVRALD  788 (850)
T ss_pred             HHHcCCCc---c--------------ccccccccCCcc--c----------ccCCCCCCeEEEccCCCCCeEEEEEEECC
Confidence            99987653   0              000100000000  0          15788999999999999999999999999


Q ss_pred             CCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       278 RpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||||||+|+++|.++|++|++|||+|.|++++|+|||+
T Consensus       789 rpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~  826 (850)
T TIGR01693       789 RPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVT  826 (850)
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEE
Confidence            99999999999999999999999999999999999984

This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.

>PRK00275 glnD PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.5e-27  Score=247.46  Aligned_cols=158  Identities=19%  Similarity=0.261  Sum_probs=136.8

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCC-ChHHHHHHHHHHHHHHcCC
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVG-DQTRLSLMEEQLKNILRGC  203 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~-~~~~~~~l~~~L~~~L~~~  203 (315)
                      .+.++|+|+++||||||++|+++|+.+|+||.+|+|+|++ |.++|+|+|++ ++|.++. +++++++|++.|.++|.++
T Consensus       702 ~~~t~V~V~~~DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d-~~g~~~~~~~~r~~~i~~~L~~~L~~~  780 (895)
T PRK00275        702 EGGTQIFIYAPDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD-DDGEPIGDNPARIEQIREGLTEALRNP  780 (895)
T ss_pred             CCeEEEEEEeCCCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC-CCCCCccchHHHHHHHHHHHHHHHcCC
Confidence            5899999999999999999999999999999999999874 89999999999 8888854 4578999999999999886


Q ss_pred             CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHH
Q 021245          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMF  283 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~  283 (315)
                      ..   .              +..+..+..  +.            .+++.++|.|.|+++.+.++|+|+|+|.||||||+
T Consensus       781 ~~---~--------------~~~~~~~~~--~~------------~~~~~~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa  829 (895)
T PRK00275        781 DD---Y--------------PTIIQRRVP--RQ------------LKHFAFPTQVTISNDAQRPVTVLEIIAPDRPGLLA  829 (895)
T ss_pred             Cc---c--------------chhhhhhhh--hh------------ccCCCCCCEEEEEECCCCCeEEEEEEECCCCCHHH
Confidence            53   0              111111100  00            15678899999999999999999999999999999


Q ss_pred             HHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          284 DIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       284 ~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      +|+++|..+|++|+.|||+|.|++|+|+|||+
T Consensus       830 ~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~  861 (895)
T PRK00275        830 RIGRIFLEFDLSLQNAKIATLGERVEDVFFIT  861 (895)
T ss_pred             HHHHHHHHCCCEEEEeEEEecCCEEEEEEEEE
Confidence            99999999999999999999999999999994

>PRK04374 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.8e-27  Score=247.18  Aligned_cols=158  Identities=19%  Similarity=0.187  Sum_probs=135.8

Q ss_pred             cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          123 HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       123 ~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      .+..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.++|+|+|++ +.|.+   .+++.++++.|.++|.
T Consensus       685 ~~~~~~~~v~v~~~d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~-~~~~~---~~~~~~i~~~l~~~l~  760 (869)
T PRK04374        685 VPDNDALEVFVYSPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP-QDTYA---DGDPQRLAAALRQVLA  760 (869)
T ss_pred             ccCCCeEEEEEEeCCCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC-CCCCC---hHHHHHHHHHHHHHHc
Confidence            556689999999999999999999999999999999999996 599999999999 77764   3568889999999998


Q ss_pred             CCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCch
Q 021245          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKL  281 (315)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGL  281 (315)
                      ++..   .              .. +.++.   ....          .++|.+||+|.|+|+.+.++|+|+|.|.|||||
T Consensus       761 ~~~~---~--------------~~-~~~~~---~~~~----------~~~~~~~~~V~~~~~~~~~~t~leI~a~DrpGL  809 (869)
T PRK04374        761 GDLQ---K--------------VR-PARRA---VPRQ----------LRHFRFAPRVEFSESAGGRRTRISLVAPDRPGL  809 (869)
T ss_pred             CCCC---c--------------cc-ccccc---Cccc----------ccCCCCCCeEEEeecCCCCeEEEEEEeCCcCcH
Confidence            8653   0              00 10000   0000          167889999999999999999999999999999


Q ss_pred             HHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          282 MFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       282 L~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||+|+.+|+++|++|++|||+|.|++|+|+|||+
T Consensus       810 La~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~  843 (869)
T PRK04374        810 LADVAHVLRMQHLRVHDARIATFGERAEDQFQIT  843 (869)
T ss_pred             HHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEE
Confidence            9999999999999999999999999999999994

>PRK03059 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=5.9e-27  Score=243.70  Aligned_cols=163  Identities=18%  Similarity=0.263  Sum_probs=139.1

Q ss_pred             eeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          120 VGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       120 v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      +...+..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.++|+|+|.+ +.|. ...++++++|++.|.+
T Consensus       670 ~~~~~~~~~~~v~i~~~d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~-~~~~-~~~~~~~~~i~~~l~~  747 (856)
T PRK03059        670 ARLSPAGEGLQVMVYTPDQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD-PEED-VHYRDIINLVEHELAE  747 (856)
T ss_pred             EEecCCCCeEEEEEEecCCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC-CCCC-CChHHHHHHHHHHHHH
Confidence            445667789999999999999999999999999999999999986 589999999999 7766 4456789999999999


Q ss_pred             HHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCC
Q 021245          199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR  278 (315)
Q Consensus       199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DR  278 (315)
                      +|.++..   .              ..++.++.  .+  .          .++|.++++|.|+++.+.++|+|+|.|+||
T Consensus       748 ~l~~~~~---~--------------~~~~~~~~--~~--~----------~~~~~~~~~V~~~~~~~~~~T~i~V~a~Dr  796 (856)
T PRK03059        748 RLAEQAP---L--------------PEPSKGRL--SR--Q----------VKHFPITPRVDLRPDERGQYYILSVSANDR  796 (856)
T ss_pred             HHcCCCC---c--------------chhhcccc--cc--c----------ccCCCCCceEEEEEcCCCCEEEEEEEeCCc
Confidence            9998754   0              11111100  00  0          267889999999999999999999999999


Q ss_pred             CchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       279 pGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||||++|+.+|+.+|++|++|||+|.|++|+|+|||.
T Consensus       797 pGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V~  833 (856)
T PRK03059        797 PGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLID  833 (856)
T ss_pred             chHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEc
Confidence            9999999999999999999999999999999999983

>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.2e-26  Score=230.92  Aligned_cols=200  Identities=22%  Similarity=0.263  Sum_probs=164.3

Q ss_pred             CCCCCCCCCChH----HHHHHhhc--CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245            1 MANAYWPYFDPE----YESLSLRI--NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (315)
Q Consensus         1 ~~~~Y~~~~~~~----h~~~~~~~--~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (315)
                      +..+||.++++.    |++++.++  ++|.|.+......+.++|+|+++|+|+||+.+|+.+...|+||++|.|+| .+|
T Consensus       644 ~~~~yflr~~~~~iawH~~~l~~~~~~~~Lv~~~~r~~~~~teV~V~a~d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG  723 (867)
T COG2844         644 CYANYFLRHSARDIAWHARHLVRHDLGKPLVLISVRPHSGGTEVFVYAPDRPRLFAVVCAALSRRGLSIVDAQIFTTRDG  723 (867)
T ss_pred             ccccceeecCHHHHhHHHHHHHhhhccCcceeeeecccCCceEEEEEcCCCccHHHHHHHHHccCCCceeeeEEEEccCC
Confidence            467999999999    99999998  36888888877789999999999999999999999999999999999997 899


Q ss_pred             EEEEEEEEEcCCCCCCCChh---HHHHHHHHHCCCCCCCCC----------cccCCceeeeecCCCceEEEEEEeCCccc
Q 021245           74 WFMDVFHVIDQQGKKITDGK---TIDYIEKALGPKGHITAG----------AKTWPSKQVGVHSVGDHTAIELIGRDRPG  140 (315)
Q Consensus        74 ~~~d~f~v~~~~g~~~~~~~---~~~~l~~~L~~~~~~~~~----------~~~~~~~~v~~~~~~~~t~i~i~~~Drpg  140 (315)
                      +++|+|+|.+++|.++..+.   +...+.+++.+.-..|+.          |..+|++.+.+..+...++++|.+.||||
T Consensus       724 ~alDtfiv~~~~g~~~~~dr~~~~~~~l~~~l~s~~~~~~~~~r~~r~~~~f~i~p~v~i~~t~~~~~t~lEv~alDRpG  803 (867)
T COG2844         724 YALDTFIVLEPDGFPVEEDRRAALRGELIEALLSGKAQPPRRRRIPRKLRHFPIPPRVTILPTASNDKTVLEVRALDRPG  803 (867)
T ss_pred             ceeeeEEEecCCCCccchhHHHHHHHHHHHHHhcCCCCCccccccCcccceeccCCceeeccccCCCceEEEEEeCCccc
Confidence            99999999999998887432   223333333322212221          23445666677777889999999999999


Q ss_pred             HHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          141 LLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       141 Ll~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      ||++++++|++++++|++|+|.|.|+++.|+|+|++ ..|.++. ++..+.+.+.|.+.+..
T Consensus       804 LLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~-~~~~~l~-~~~~q~l~~~ll~al~~  863 (867)
T COG2844         804 LLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD-ADGQALN-AELRQSLLQRLLEALLP  863 (867)
T ss_pred             HHHHHHHHHHhcccceeeeeeccccccceeEEEEec-cccccCC-HHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999 8888885 44556666666666653

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=1.3e-26  Score=239.11  Aligned_cols=164  Identities=22%  Similarity=0.237  Sum_probs=136.2

Q ss_pred             eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .+..++ .+.++|+|+|+||||||++|+++|+.+|+||++|+|+|.+|.+.|+|+|++ +.|.+.    .++++++.|.+
T Consensus       591 ~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~-~~~~~~----~~~~l~~~L~~  664 (774)
T PRK03381        591 EIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP-RFGSPP----DAALLRQDLRR  664 (774)
T ss_pred             EEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC-CCCCcc----hHHHHHHHHHH
Confidence            344556 799999999999999999999999999999999999998899999999999 777652    35889999999


Q ss_pred             HHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCC
Q 021245          199 ILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDR  278 (315)
Q Consensus       199 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DR  278 (315)
                      +|.+...                 ...++.++........          .++|..+++|.++|+.+.++|+|+|.|+||
T Consensus       665 ~L~~~~~-----------------~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~~~~~~~~~t~i~V~a~Dr  717 (774)
T PRK03381        665 ALDGDLD-----------------VLARLAAREAAAAAVP----------VRRPAAPPRVLWLDGASPDATVLEVRAADR  717 (774)
T ss_pred             HHcCCCc-----------------hhhhhhcccccccccc----------cccCCCCcEEEEEECCCCCeEEEEEEeCCc
Confidence            9988543                 0111111000000000          257889999999999999999999999999


Q ss_pred             CchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          279 AKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       279 pGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||||++|+++|+++|++|++|+|+|.|++|+|+|||+
T Consensus       718 pGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~  754 (774)
T PRK03381        718 PGLLARLARALERAGVDVRWARVATLGADVVDVFYVT  754 (774)
T ss_pred             hhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEE
Confidence            9999999999999999999999999999999999994

>PRK05092 PII uridylyl-transferase; Provisional

Probab=99.95  E-value=2.4e-26  Score=241.82  Aligned_cols=167  Identities=22%  Similarity=0.364  Sum_probs=141.7

Q ss_pred             eeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          119 QVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       119 ~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .+.+++..+.++|+|+++||||||++|+++|+.+|+||.+|+|+|+ +|.+.|+|+|++ ++|.+..+++++++|++.|.
T Consensus       723 ~~~~~~~~~~t~v~I~~~Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~-~~g~~~~~~~~~~~l~~~L~  801 (931)
T PRK05092        723 EVRPDPARGVTEVTVLAADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD-AFGRDEDEPRRLARLAKAIE  801 (931)
T ss_pred             EEEecCCCCeEEEEEEeCCCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHHH
Confidence            3555667789999999999999999999999999999999999996 689999999999 78887767789999999999


Q ss_pred             HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC
Q 021245          198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD  277 (315)
Q Consensus       198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D  277 (315)
                      .++.+...   .              +..+.+..   .....         .++|.++|+|.|+|+.+.++|+|+|.|.|
T Consensus       802 ~~l~~~~~---~--------------~~~~~~r~---~~~~~---------~~~~~~~~~V~~~~~~s~~~t~i~I~~~D  852 (931)
T PRK05092        802 DALSGEVR---L--------------PEALAKRT---KPKKR---------ARAFHVPPRVTIDNEASNRFTVIEVNGRD  852 (931)
T ss_pred             HHHcCCCC---C--------------cccccccc---Ccccc---------ccCCCCCCEEEEeeCCCCCeEEEEEEECC
Confidence            99987643   0              00111100   00000         15788999999999999999999999999


Q ss_pred             CCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          278 RAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       278 RpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      |||||++|+++|+++|++|++|+|+|.|++|+|+|||+
T Consensus       853 rpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~  890 (931)
T PRK05092        853 RPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVT  890 (931)
T ss_pred             cCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEe
Confidence            99999999999999999999999999999999999984

>PRK03381 PII uridylyl-transferase; Provisional

Probab=99.94  E-value=1e-25  Score=232.41  Aligned_cols=173  Identities=21%  Similarity=0.228  Sum_probs=146.7

Q ss_pred             CCCeEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245           21 NPPRASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (315)
Q Consensus        21 ~~~~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (315)
                      ..|.|.+.+.. .+.++|+|+++||||||++||++|+.+||||++|+|+|.+|+++|+|+|.++.|.+...+++.+.|++
T Consensus       586 ~~~~v~~~~~~-~~~~~V~V~~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~~~~~~~~~~~l~~~L~~  664 (774)
T PRK03381        586 GGVHVEIAPAD-PHMVEVTVVAPDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSPRFGSPPDAALLRQDLRR  664 (774)
T ss_pred             CCCEEEEeeCC-CCeEEEEEEecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECCCCCcchHHHHHHHHHH
Confidence            56788888888 89999999999999999999999999999999999999999999999999988876555667888888


Q ss_pred             HHCCCCCCCC---C------------cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245          101 ALGPKGHITA---G------------AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (315)
Q Consensus       101 ~L~~~~~~~~---~------------~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~  165 (315)
                      +|.+......   .            +..++.+.++++.+.++|+|+|+++||||||++|+++|+++|+||++|+|+|.+
T Consensus       665 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g  744 (774)
T PRK03381        665 ALDGDLDVLARLAAREAAAAAVPVRRPAAPPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLG  744 (774)
T ss_pred             HHcCCCchhhhhhcccccccccccccCCCCcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecC
Confidence            8887532100   0            111223345567777899999999999999999999999999999999999999


Q ss_pred             CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          166 RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       166 ~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      +++.|+|+|++ ++|.++.++  ++.|+++|.
T Consensus       745 ~~a~D~F~V~d-~~g~~~~~~--~~~l~~~L~  773 (774)
T PRK03381        745 ADVVDVFYVTG-AAGGPLADA--RAAVEQAVL  773 (774)
T ss_pred             CeEEEEEEEEC-CCCCcCchH--HHHHHHHhh
Confidence            99999999999 899998754  677777764

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.83  E-value=1.1e-20  Score=138.69  Aligned_cols=48  Identities=65%  Similarity=1.093  Sum_probs=47.0

Q ss_pred             eeEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       268 ~tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||+|||.|+|||||||+|+++|.++|++|++|||+|.||+|+|+|||+
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~   48 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIR   48 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEE
Confidence            799999999999999999999999999999999999999999999995

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.79  E-value=1.2e-19  Score=132.16  Aligned_cols=48  Identities=27%  Similarity=0.373  Sum_probs=46.9

Q ss_pred             eeEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       268 ~tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      ||+|||.|+|||||||+|+++|+++|++|++|||+|.|++|+|+|||+
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~   48 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVT   48 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEE
Confidence            689999999999999999999999999999999999999999999994

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.77  E-value=5.7e-18  Score=124.26  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=70.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      +|+|+|.|+||||||++|+++|+++|++|..|+|.|.|+++.|+|||++ .+|.++.++++.+.|++.|.++|..
T Consensus         1 ~TvveV~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d-~~g~kl~~~~~~~~l~~~L~~al~~   74 (75)
T cd04897           1 YSVVTVQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH-KDGRTLSTEGERQRVIKCLEAAIER   74 (75)
T ss_pred             CEEEEEEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc-CCCCccCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999999999999999999999999999999999999999 8999999998999999999998864

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.75  E-value=1.7e-18  Score=127.00  Aligned_cols=46  Identities=20%  Similarity=0.414  Sum_probs=45.3

Q ss_pred             eEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEE--ecCCeeEEEEee
Q 021245          269 SVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAIS--SDGPHASQVRVL  314 (315)
Q Consensus       269 tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~--T~g~~a~D~F~v  314 (315)
                      |++||+|+|||||||+|+++|+++|++|++|||+  |.|++|+|+|||
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv   48 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV   48 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE
Confidence            6899999999999999999999999999999999  999999999998

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.73  E-value=2.8e-17  Score=119.74  Aligned_cols=69  Identities=22%  Similarity=0.325  Sum_probs=65.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      +|+|+|.++||||||++|+++|+++|++|+.|+|.|.|+++.|+|||++ .+|.++.++++++.|+++|.
T Consensus         1 ~Tviev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d-~~g~kl~d~~~~~~l~~~L~   69 (72)
T cd04895           1 CTLVKVDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD-QLGNKLTDDSLIAYIEKSLG   69 (72)
T ss_pred             CEEEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC-CCCCCCCCHHHHHHHHHHhc
Confidence            4889999999999999999999999999999999999999999999999 89999988888888988874

This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.70  E-value=1.7e-16  Score=116.51  Aligned_cols=72  Identities=14%  Similarity=0.196  Sum_probs=67.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~--t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      |.++|.++||||||++|+++|+++|++|+.|+|.  |.|+++.|+||| + .+|.++.++++.+.|+++|.++|..
T Consensus         1 Tvlev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv-~-~~g~kl~d~~~~~~L~~~L~~~l~~   74 (75)
T cd04896           1 TLLQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIV-Q-SDGKKIMDPKKQAALCARLREEMVC   74 (75)
T ss_pred             CEEEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEE-e-CCCCccCCHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999999999  999999999999 7 7888898888999999999988753

This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.68  E-value=4.8e-16  Score=114.68  Aligned_cols=73  Identities=58%  Similarity=0.945  Sum_probs=67.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCC-CCcCCChHHHHHHHHHHHHHHcC
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTT-CRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~-g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      |+|+|+++||||||++|+++|+++|+||++|+++|.++++.|+|+|++ ++ +.++.+++++++|++.|.++|.+
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d-~~~~~~~~~~~~~~~i~~~L~~~l~g   74 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD-EETGAPIDDPIRLASIEDRLDNVLRG   74 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc-CcCCCCCCCHHHHHHHHHHHHHHhcC
Confidence            579999999999999999999999999999999999999999999999 76 77777788999999999988864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.66  E-value=9.9e-16  Score=112.69  Aligned_cols=71  Identities=28%  Similarity=0.482  Sum_probs=65.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ++|+|+++||||||++++++|+.+|+||++|+|+|+ ++++.|+|+|++ +++.++.++++++++++.|.++|
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~-~~~~~~~~~~~~~~l~~~L~~~l   73 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD-PDGEPIGERERLARIREALEDAL   73 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC-CCCCCCChHHHHHHHHHHHHhhC
Confidence            689999999999999999999999999999999998 599999999999 88888777788999999997754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.62  E-value=5.5e-15  Score=109.59  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=64.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe-eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT-HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      .++|+++||||||++++++|+++|+||++|+|+| .++++.|+|+|++ +++. ..+++++++++++|.++|..
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d-~~~~-~~~~~~~~~l~~~L~~~L~~   73 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD-AREL-LHTKKRREETYDYLRAVLGD   73 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC-CCCC-CCCHHHHHHHHHHHHHHHch
Confidence            6899999999999999999999999999999997 5799999999999 7666 45567899999999998864

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.59  E-value=4e-14  Score=122.59  Aligned_cols=150  Identities=16%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (315)
Q Consensus        32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (315)
                      ...+.+|++.|+||||+++.++++|+++||||.+.++...+|.|.-.+.|.   +.+    .....|+..|........ 
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs---~~~----~~~~~le~~L~~l~~~~~-   76 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS---GSW----NAITLIESTLPLKGAELD-   76 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe---CCh----hHHHHHHHHHHhhhhhcC-
Confidence            447889999999999999999999999999999999999999888777773   332    246677777765432111 


Q ss_pred             cccCCceeee------ecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--e----EEEEEEEEeCCC
Q 021245          112 AKTWPSKQVG------VHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--R----IACVLYVNDDTT  179 (315)
Q Consensus       112 ~~~~~~~~v~------~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~----~~d~F~V~~~~~  179 (315)
                          ....+.      .......+.++|++.||||++++++++|+++|+||.+.+..|.+.  .    ..-.|.+.- |.
T Consensus        77 ----L~i~v~~~~~~~~~~~~~~~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~l-P~  151 (190)
T PRK11589         77 ----LLIVMKRTTARPRPAMPATVWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHS-PA  151 (190)
T ss_pred             ----eEEEEEeccccccccCCceEEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEc-CC
Confidence                011110      011112489999999999999999999999999999988887653  2    333444444 32


Q ss_pred             CCcCCChHHHHHHHHHHHHHH
Q 021245          180 CRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       180 g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      +.      .++.|+++|.+..
T Consensus       152 ~~------~~~~L~~~l~~l~  166 (190)
T PRK11589        152 SQ------DAANIEQAFKALC  166 (190)
T ss_pred             CC------CHHHHHHHHHHHH
Confidence            22      2467777775433

>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.58  E-value=1.5e-14  Score=106.41  Aligned_cols=69  Identities=29%  Similarity=0.483  Sum_probs=62.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      ++|.|+++||||||++++++|+.+|+||++|+|+|. +|+++|+|+|++++|.++.+++.+++|++.|..
T Consensus         2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~~~~~~~~~~~~~~l~~~L~~   71 (73)
T cd04900           2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDPDGEPIGERERLARIREALED   71 (73)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECCCCCCCChHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999985 799999999999888887777778888887754

This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.54  E-value=6.3e-14  Score=103.34  Aligned_cols=69  Identities=30%  Similarity=0.447  Sum_probs=61.7

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC-CCCCCChhHHHHHHHHHCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ-GKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~-g~~~~~~~~~~~l~~~L~~  104 (315)
                      +.|.|+++||||||++|+++|+.+||||++|+|+|.+|+++|+|+|.+++ |.++.+++.+++|++.|..
T Consensus         1 t~~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~~L~~   70 (74)
T cd04925           1 TAIELTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDEETGAPIDDPIRLASIEDRLDN   70 (74)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcCcCCCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999987 7777676677777777654

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.52  E-value=2e-13  Score=138.77  Aligned_cols=127  Identities=15%  Similarity=0.097  Sum_probs=108.3

Q ss_pred             EEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCc
Q 021245          129 TAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED  207 (315)
Q Consensus       129 t~i~i~~-~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  207 (315)
                      -.++|.. +|++|+|.+++++|+.+|++|.+|++.+ +|.....|.|.. ..|.+. ++   ..+++.+..++.+..+  
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~-~~~~~~-~~---~~~~~~~~~~~~~~~~--  618 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRA-NGPQDF-DP---QEFLQAYKSGVYSELP--  618 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEec-CCCCCC-Ch---HHHHHHHHHhhcCCCC--
Confidence            5777777 9999999999999999999999999999 888899999998 777763 34   6788888888887765  


Q ss_pred             cccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHh
Q 021245          208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC  287 (315)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~  287 (315)
                                     .   +                        ...||+|.+..      +++||++.||||||+.|++
T Consensus       619 ---------------~---~------------------------~~~~~~~~~~~------~~~e~r~~dr~g~l~~~~~  650 (693)
T PRK00227        619 ---------------D---P------------------------APGITATFWHG------NILEVRTEDRRGALGALLG  650 (693)
T ss_pred             ---------------c---c------------------------cCCCCceEeeC------cEEEEEeCccccHHHHHHH
Confidence                           0   0                        01246677764      7999999999999999999


Q ss_pred             hhcCCceEEEEEEEEecCCeeEEEEeeC
Q 021245          288 TLTDMQYVVFHAAISSDGPHASQVRVLE  315 (315)
Q Consensus       288 ~l~~~~i~I~~AkI~T~g~~a~D~F~v~  315 (315)
                      +|.    +|.+|+++|.|..+.|+||+.
T Consensus       651 ~l~----~~~~~~~~~~g~~~~~~~~~~  674 (693)
T PRK00227        651 VLP----DLLWITASTPGATMIVQAALK  674 (693)
T ss_pred             Hhh----hhhhHhhcCCCcceEEEEEec
Confidence            999    899999999999999999984

>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional

Probab=99.51  E-value=1.8e-13  Score=118.50  Aligned_cols=137  Identities=13%  Similarity=0.179  Sum_probs=100.2

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCC
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCD  204 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~  204 (315)
                      ...+.+|+++|+||||+.+.|+++|+++||||.+.+....++....++.|+.    .+    ..++.|+..|.. +....
T Consensus         5 m~~~lviTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~----~~----~~~~~le~~L~~-l~~~~   75 (190)
T PRK11589          5 SQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSG----SW----NAITLIESTLPL-KGAEL   75 (190)
T ss_pred             cccEEEEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeC----Ch----hHHHHHHHHHHh-hhhhc
Confidence            3477899999999999999999999999999999999999999999999976    22    356788887743 33222


Q ss_pred             CCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHH
Q 021245          205 DEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFD  284 (315)
Q Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~  284 (315)
                      .                     |...+.+...             ..   +.      ..... ..++|.+.||||++++
T Consensus        76 ~---------------------L~i~v~~~~~-------------~~---~~------~~~~~-~~v~v~G~DrPGIV~~  111 (190)
T PRK11589         76 D---------------------LLIVMKRTTA-------------RP---RP------AMPAT-VWVQVEVADSPHLIER  111 (190)
T ss_pred             C---------------------eEEEEEeccc-------------cc---cc------cCCce-EEEEEEECCCCCHHHH
Confidence            2                     0000000000             00   00      00012 4567999999999999


Q ss_pred             HHhhhcCCceEEEEEEEEecCC--eeEEEEee
Q 021245          285 IVCTLTDMQYVVFHAAISSDGP--HASQVRVL  314 (315)
Q Consensus       285 I~~~l~~~~i~I~~AkI~T~g~--~a~D~F~v  314 (315)
                      |+++|+++|+||..-+-.|.+.  ...+.|..
T Consensus       112 vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~  143 (190)
T PRK11589        112 FTALFDSHHMNIAELVSRTQPAEGERPAQLHI  143 (190)
T ss_pred             HHHHHHHcCCChhheEEeeecCCCCCcccEEE
Confidence            9999999999999999999984  66666643

>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.50  E-value=2.5e-13  Score=100.64  Aligned_cols=68  Identities=24%  Similarity=0.400  Sum_probs=58.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      .+.|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+++|. ..+++.+++|++.|...
T Consensus         2 ~~ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~~~~-~~~~~~~~~l~~~L~~~   70 (76)
T cd04927           2 LLKLFCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDAREL-LHTKKRREETYDYLRAV   70 (76)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCCCCC-CCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999997 89999999999998776 44455666677666543

This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.48  E-value=3.5e-13  Score=96.97  Aligned_cols=65  Identities=25%  Similarity=0.342  Sum_probs=54.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (315)
                      .+|+|+++||||||++++++|+.+|+||++|+|+| .+|+++|+|+|.+.+|..  +..+.+.++++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~~~~--~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWKRGE--TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCCccc--hHHHHHHHHHhh
Confidence            57999999999999999999999999999999996 799999999999987763  123445555544

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains

Probab=99.45  E-value=8.2e-13  Score=95.07  Aligned_cols=65  Identities=22%  Similarity=0.356  Sum_probs=55.5

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      .+|+|+++||||||++++++|+.+|+||++|+|+|+ +|.++|+|+|.+ .+|.-      -+.++++|.++|
T Consensus         2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d-~~~~~------~~~~~~~~~~~~   67 (68)
T cd04928           2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG-WKRGE------TAALGHALQKEI   67 (68)
T ss_pred             EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec-CCccc------hHHHHHHHHHhh
Confidence            579999999999999999999999999999999987 589999999999 65532      245666666655

This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.40  E-value=3.1e-12  Score=93.79  Aligned_cols=67  Identities=28%  Similarity=0.444  Sum_probs=60.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      +.++|+++||||+|++|+++|+++|+||.+|+++|.++.+.|+|+|++ +++.++ ++++++++++.|-
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~-~~~~~~-~~~~~~~l~~~l~   68 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD-ANGNPV-DPKTIEAVRQEIG   68 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC-CCCCcC-CHHHHHHHHHHhc
Confidence            689999999999999999999999999999999998889999999999 788876 5678888887774

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=99.37  E-value=6.7e-12  Score=91.99  Aligned_cols=69  Identities=30%  Similarity=0.567  Sum_probs=62.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      +.|+|.++|+||+|++|+++|+++|+||++|.++|.+++++|+|+|.+.++.+. +++.+++|++.|...
T Consensus         2 tri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~~~~~~-~~~~~~~l~~~l~~~   70 (72)
T cd04926           2 VRLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDANGNPV-DPKTIEAVRQEIGPA   70 (72)
T ss_pred             eEEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECCCCCcC-CHHHHHHHHHHhccc
Confidence            689999999999999999999999999999999998889999999999888876 566888899988753

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.33  E-value=1.5e-11  Score=89.10  Aligned_cols=70  Identities=36%  Similarity=0.536  Sum_probs=63.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      |.+.|+++|+||+|++|+++|+++|+||.++++.+.++.+.|+|++++ +++.+ .+.+++++|++.|.+++
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~-~~~~~-~~~~~~~~i~~~l~~~~   70 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD-ADGQP-LDPERQEALRAALGEAL   70 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC-CCCCc-CCHHHHHHHHHHHHhhC
Confidence            578999999999999999999999999999999998889999999999 88888 45678899999987653

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00227 glnD PII uridylyl-transferase; Provisional

Probab=99.33  E-value=3e-11  Score=123.00  Aligned_cols=145  Identities=14%  Similarity=0.110  Sum_probs=121.4

Q ss_pred             EEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245           36 TVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (315)
Q Consensus        36 ~~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~  114 (315)
                      ..++|.. +|++|++.+++++|+.+|++|++|++.+ +|.++..|.|....|.++.+..+.+.++.++.+.+..+.   .
T Consensus       547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  622 (693)
T PRK00227        547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVRANGPQDFDPQEFLQAYKSGVYSELPDPA---P  622 (693)
T ss_pred             CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEecCCCCCCChHHHHHHHHHhhcCCCCccc---C
Confidence            5778887 9999999999999999999999999999 888889999999999988888899999999988876431   2


Q ss_pred             CCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHH
Q 021245          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEE  194 (315)
Q Consensus       115 ~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~  194 (315)
                      .++..+.+.     ++++|.+.||+|+|+.++++|.    .|..|++.|.|..+.|.|++.+ .   .     ....++.
T Consensus       623 ~~~~~~~~~-----~~~e~r~~dr~g~l~~~~~~l~----~~~~~~~~~~g~~~~~~~~~~~-~---~-----~r~~~~~  684 (693)
T PRK00227        623 GITATFWHG-----NILEVRTEDRRGALGALLGVLP----DLLWITASTPGATMIVQAALKP-G---F-----DRATVER  684 (693)
T ss_pred             CCCceEeeC-----cEEEEEeCccccHHHHHHHHhh----hhhhHhhcCCCcceEEEEEecC-c---c-----cHHHHHH
Confidence            233333332     7999999999999999999998    8899999999999999999986 1   1     2356777


Q ss_pred             HHHHHHcC
Q 021245          195 QLKNILRG  202 (315)
Q Consensus       195 ~L~~~L~~  202 (315)
                      .+..+|.+
T Consensus       685 ~~~~~~~~  692 (693)
T PRK00227        685 DVTRVLAG  692 (693)
T ss_pred             HHHHHHhc
Confidence            77777654

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.28  E-value=4e-11  Score=99.97  Aligned_cols=154  Identities=14%  Similarity=0.172  Sum_probs=113.4

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC-
Q 021245           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG-  111 (315)
Q Consensus        33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~-  111 (315)
                      ..+.+|++++.||||+...+++...++||||.++++...|+.+.-+..+.   |.|    +-..++|..|......... 
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lis---gs~----dav~~le~~l~~l~~~~~L~   75 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLIS---GSW----DAVTLLEATLPLLGAELDLL   75 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEe---eCH----HHHHHHHHHhhcccccCCeE
Confidence            35689999999999999999999999999999999999998887666665   443    4678888888765431110 


Q ss_pred             ---cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCCh
Q 021245          112 ---AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQ  186 (315)
Q Consensus       112 ---~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~  186 (315)
                         .+..++..   ......+.+.|.+.||||++.+++.+|..+|+||.+....|..  +.-...|..+- .-+-|..  
T Consensus        76 v~m~rt~~~~~---~a~~~~v~v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~a~~s~~~lfha~i-t~~lPa~--  149 (176)
T COG2716          76 VVMKRTGAHPT---PANPAPVWVYVDANDRPGIVEEFTALFDGHGINIENLVSRTYPAPGSSAPLFHAQI-TARLPAN--  149 (176)
T ss_pred             EEEeecCCCcc---CCCCceEEEEEEecCCccHHHHHHHHHHhcCCchhhceeeeeecCCCCccceehhh-hccCCCc--
Confidence               01111110   2344668899999999999999999999999999988887753  44555666665 4344532  


Q ss_pred             HHHHHHHHHHHHH
Q 021245          187 TRLSLMEEQLKNI  199 (315)
Q Consensus       187 ~~~~~l~~~L~~~  199 (315)
                      -.+..|++++.+.
T Consensus       150 ~~i~~l~~~f~al  162 (176)
T COG2716         150 LSISALRDAFEAL  162 (176)
T ss_pred             CcHHHHHHHHHHH
Confidence            2457788888543

>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains

Probab=99.17  E-value=2.8e-10  Score=82.39  Aligned_cols=68  Identities=35%  Similarity=0.561  Sum_probs=60.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      +.|.|.++|+||+|++|+++|+++|++|.++++.+.++++++.|++.+.+|.+ .+++.+++|++.|..
T Consensus         1 ~~l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~~~~-~~~~~~~~i~~~l~~   68 (70)
T cd04899           1 TVLELTALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDADGQP-LDPERQEALRAALGE   68 (70)
T ss_pred             CEEEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999778999999999988887 345678888888754

This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]

Probab=99.15  E-value=8.7e-11  Score=97.97  Aligned_cols=126  Identities=17%  Similarity=0.191  Sum_probs=94.1

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCC
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDD  205 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~  205 (315)
                      .++.+|++++.||||+...|++...++|||+.++|+...|+.+.-+..++.    .|    +...+|+..| ..+..+.+
T Consensus         3 ~~~LvItavg~d~pgl~~~lar~v~s~Gcn~leSRla~~g~~~a~i~lisg----s~----dav~~le~~l-~~l~~~~~   73 (176)
T COG2716           3 EHYLVITAVGADRPGLVNTLARAVASSGCNWLESRLAMLGEEFAGIMLISG----SW----DAVTLLEATL-PLLGAELD   73 (176)
T ss_pred             ccEEEEEEecCCCcHHHHHHHHHHHhcCCcchHHHHHHhhcceeEEEEEee----CH----HHHHHHHHHh-hcccccCC
Confidence            467899999999999999999999999999999999999999988888887    23    5667888888 44554443


Q ss_pred             CccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHH
Q 021245          206 EDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDI  285 (315)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I  285 (315)
                                           |.-.|.+....                    ++  . ...--..++|.+.||||++.++
T Consensus        74 ---------------------L~v~m~rt~~~--------------------~~--~-a~~~~v~v~v~a~DrpgIv~~~  109 (176)
T COG2716          74 ---------------------LLVVMKRTGAH--------------------PT--P-ANPAPVWVYVDANDRPGIVEEF  109 (176)
T ss_pred             ---------------------eEEEEeecCCC--------------------cc--C-CCCceEEEEEEecCCccHHHHH
Confidence                                 11122111110                    00  0 1112234668999999999999


Q ss_pred             HhhhcCCceEEEEEEEEec
Q 021245          286 VCTLTDMQYVVFHAAISSD  304 (315)
Q Consensus       286 ~~~l~~~~i~I~~AkI~T~  304 (315)
                      ++.|.++|++|.+..-.|.
T Consensus       110 T~lf~~~~inie~L~~~~~  128 (176)
T COG2716         110 TALFDGHGINIENLVSRTY  128 (176)
T ss_pred             HHHHHhcCCchhhceeeee
Confidence            9999999999988766654

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=99.03  E-value=3.2e-09  Score=76.40  Aligned_cols=69  Identities=39%  Similarity=0.615  Sum_probs=60.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      +.+.|.++|+||+|++|+++|+++|++|.++.+.+.++...+.|.+.+ +++.. .+++++++|++.|...
T Consensus         1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~-~~~~~-~~~~~~~~l~~~l~~~   69 (70)
T cd04873           1 TVVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD-SDGRP-LDPERIARLEEALEDA   69 (70)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC-CCCCc-CCHHHHHHHHHHHHhh
Confidence            368899999999999999999999999999999998778999999998 66665 3457888999988654

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD

Probab=98.87  E-value=2.3e-08  Score=71.90  Aligned_cols=67  Identities=40%  Similarity=0.612  Sum_probs=57.8

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      .|.|.++|+||+|++++++|+++|++|.++.+++.+++..+.|++..+++.. .+++..++|++.|..
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~l~~~l~~   68 (70)
T cd04873           2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSDGRP-LDPERIARLEEALED   68 (70)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCCCCc-CCHHHHHHHHHHHHh
Confidence            6889999999999999999999999999999998666999999999877665 344677888887754

This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.73  E-value=1.5e-07  Score=69.53  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=54.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      +..|++.|+||||+++.++++|+++|+||.+.+..+.++....++.|.. +       ++..++++++|.+.
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~l   65 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI-P-------EDSLERLESALEEL   65 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE-S-------HHHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe-C-------cccHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999999999999988 3       34668888888654

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=98.68  E-value=7.9e-08  Score=66.62  Aligned_cols=49  Identities=27%  Similarity=0.544  Sum_probs=46.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~   84 (315)
                      ++|+|.|||+.||-+++|+++.++|++|..+++.|+|.|.+-.|+|...
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~~   49 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVPR   49 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEecC
Confidence            4799999999999999999999999999999999999999999999864

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=98.64  E-value=3.4e-07  Score=67.65  Aligned_cols=63  Identities=25%  Similarity=0.330  Sum_probs=50.0

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      ...|++.|+||||+++.++++|+++|+||.+.++.+.+|.+.-.+.|.-+       ++..++|++.|..
T Consensus         2 ~~vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~-------~~~~~~l~~~L~~   64 (76)
T PF13740_consen    2 QLVITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP-------EDSLERLESALEE   64 (76)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES-------HHHHHHHHHHHHH
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC-------cccHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999888888643       2345666666644

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.53  E-value=6.7e-07  Score=66.23  Aligned_cols=47  Identities=23%  Similarity=0.268  Sum_probs=42.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ..|++.|+||||+.+.+++.|+++|+||.+.+.+..+|++.-.+.+.
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~   48 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVE   48 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEE
Confidence            67899999999999999999999999999999999888886656555

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.50  E-value=1.7e-06  Score=61.23  Aligned_cols=61  Identities=25%  Similarity=0.449  Sum_probs=46.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      +.|.+.++||||+|++++++|+++|+||..+...+.++  .....+...+         ....+.+.++|++
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~   63 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD---------EEDLEKLLEELEA   63 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE---------GHGHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC---------CCCHHHHHHHHHc
Confidence            57889999999999999999999999999999999875  3344444443         1234555566644

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.47  E-value=8.9e-07  Score=65.14  Aligned_cols=64  Identities=22%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      .++|.|+||||+.++++++|+++|+||.+.+..+.++.....+.+.- +.+.      ..+.++++|....
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~-p~~~------~~~~l~~~l~~l~   64 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQI-PDSA------DSEALLKDLLFKA   64 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEc-CCCC------CHHHHHHHHHHHH
Confidence            37899999999999999999999999999998888888888888877 4331      2367777775433

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=98.46  E-value=2.2e-06  Score=67.28  Aligned_cols=114  Identities=22%  Similarity=0.268  Sum_probs=84.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW  115 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  115 (315)
                      -+|.|+..|+||-|+..+.+|.+.|+||..-.|.-.+.+-+-.+.|..+       +    .-.++|.+...        
T Consensus         4 KQISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~-------d----~A~~~Lee~gF--------   64 (142)
T COG4747           4 KQISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRP-------D----EAHSVLEEAGF--------   64 (142)
T ss_pred             eEEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCCh-------H----HHHHHHHHCCc--------
Confidence            3688999999999999999999999999988777555544445555322       1    11334544321        


Q ss_pred             CceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       116 ~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                       .+.       ..-++-|..+|+||-|++|+.+|.++++|+.++..+++. ..++-+|.+.+
T Consensus        65 -~Vr-------~~dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed  118 (142)
T COG4747          65 -TVR-------ETDVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVED  118 (142)
T ss_pred             -EEE-------eeeEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhH
Confidence             111       224778899999999999999999999999999999875 56666666554

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.42  E-value=2.2e-06  Score=63.49  Aligned_cols=62  Identities=21%  Similarity=0.382  Sum_probs=50.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      +.+++.|+||||+.++|+++|+++|+||.+.+.++.++.......+.. +   +    ...+.|++.|.+
T Consensus         2 ~iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~-~---~----~~~~~l~~~l~~   63 (77)
T cd04893           2 LVISALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEG-S---W----DAIAKLEAALPG   63 (77)
T ss_pred             EEEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEe-c---c----ccHHHHHHHHHH
Confidence            678999999999999999999999999999999998888776666665 2   1    123677777754

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=98.37  E-value=3e-06  Score=59.94  Aligned_cols=48  Identities=31%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCC--EEEEEEEEEc
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGG--WFMDVFHVID   83 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g--~~~d~f~v~~   83 (315)
                      +.|.|.++||||+|++++++|+++|+||..+.+.+.++  +.+..+...+
T Consensus         1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~   50 (66)
T PF01842_consen    1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVD   50 (66)
T ss_dssp             EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECC
Confidence            46889999999999999999999999999999998544  4544444443

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=98.34  E-value=2.7e-06  Score=62.60  Aligned_cols=50  Identities=16%  Similarity=0.157  Sum_probs=43.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQG   86 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g   86 (315)
                      .|+|.|+||||+.++++++|+++|+||.+.+..+.++.+.-.+.+.-+.+
T Consensus         1 ~vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~   50 (75)
T cd04870           1 LITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDS   50 (75)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCC
Confidence            37899999999999999999999999999998888888777787775544

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.18  E-value=6.9e-06  Score=62.29  Aligned_cols=66  Identities=20%  Similarity=0.368  Sum_probs=52.1

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+++.|+||||++++|+++|+++|+||.+.+-.+.++.....+.+.. +. ..    ...+.|++.|....
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~-~~-~~----~~~~~L~~~l~~l~   67 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDI-SE-SN----LDFAELQEELEELG   67 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEe-CC-CC----CCHHHHHHHHHHHH
Confidence            478999999999999999999999999999999988777777777776 32 01    12467777775533

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.10  E-value=2.5e-05  Score=57.93  Aligned_cols=62  Identities=24%  Similarity=0.394  Sum_probs=47.0

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC------CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN------RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~------~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ++++.|+|+||++++|+++|+++|+||.+.+..+.+      +.....+.+.- +.+      .....+++.|..
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~-p~~------~~~~~l~~~l~~   68 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLAL-PAG------TDLDALREELEE   68 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEec-CCC------CCHHHHHHHHHH
Confidence            378999999999999999999999999999999876      44444555554 321      124677777754

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>PRK00194 hypothetical protein; Validated

Probab=98.08  E-value=1.7e-05  Score=60.27  Aligned_cols=65  Identities=22%  Similarity=0.405  Sum_probs=50.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .+.+++.|+||||++++++++|+++|+||.+.+-.+.++...-.+.+.- +. .+.    ..+.+++.|.+
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~-~~-~~~----~~~~l~~~l~~   67 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDI-SE-SKK----DFAELKEELEE   67 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEe-cC-CCC----CHHHHHHHHHH
Confidence            5789999999999999999999999999999998887777666666655 31 111    23667777754

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=98.05  E-value=3.3e-05  Score=57.22  Aligned_cols=48  Identities=25%  Similarity=0.288  Sum_probs=40.2

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC------CEEEEEEEEEcC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG------GWFMDVFHVIDQ   84 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~------g~~~d~f~v~~~   84 (315)
                      +|+|.|+|+||++++|++.|+++|+||.+.+..+.+      +.+.-.+.+.-+
T Consensus         1 ~l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p   54 (81)
T cd04869           1 VVEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALP   54 (81)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecC
Confidence            378999999999999999999999999999998855      556555666544

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=98.05  E-value=1.6e-05  Score=60.20  Aligned_cols=49  Identities=22%  Similarity=0.285  Sum_probs=42.5

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~   84 (315)
                      ..|++.|+|+||+++.++++|+++|+||.+.+.++.++.+.-.+.+.-+
T Consensus         2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~   50 (88)
T cd04872           2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS   50 (88)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence            4789999999999999999999999999999998877777666666533

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=98.03  E-value=3.9e-05  Score=56.04  Aligned_cols=63  Identities=17%  Similarity=0.232  Sum_probs=43.9

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .|++.|+||||++++|+++|+++|+||.+.+..+..  +.....+.+.. +.+ .    -..+.|+++|..
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~   65 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFEL-EGF-D----LSREALEAAFAP   65 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEe-CCC-C----CCHHHHHHHHHH
Confidence            378999999999999999999999999999998742  33222233333 111 0    124677777754

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=98.02  E-value=0.0002  Score=66.09  Aligned_cols=115  Identities=11%  Similarity=0.141  Sum_probs=67.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~  114 (315)
                      .|+|.|+|+||+.+.+++.|+++|+||.+.+.+..  +|++.-.+.+.-+ +...+.+.+.+.++.++...+..      
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~-~~~~~~~~l~~~l~~~~~~~~~l------   74 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLE-GFRLEESSLLAAFKSALAEKFEM------   74 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeC-CCCCCHHHHHHHHHHHHHHHhCC------
Confidence            58999999999999999999999999999999984  4777655555533 22222233444444423332221      


Q ss_pred             CCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245          115 WPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW  162 (315)
Q Consensus       115 ~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~  162 (315)
                        ..++....  ....|-|.+--+--=|..|........++..=+-+.
T Consensus        75 --~i~l~~~~--~~~ki~vl~Sg~g~nl~~l~~~~~~g~l~~~i~~vi  118 (280)
T TIGR00655        75 --TWELILAD--KLKRVAILVSKEDHCLGDLLWRWYSGELDAEIALVI  118 (280)
T ss_pred             --EEEEecCC--CCcEEEEEEcCCChhHHHHHHHHHcCCCCcEEEEEE
Confidence              11222211  122333333334445666666666555554333333

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK00194 hypothetical protein; Validated

Probab=98.01  E-value=2.6e-05  Score=59.22  Aligned_cols=48  Identities=25%  Similarity=0.335  Sum_probs=41.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ...|++.|+|+||+++++++.|+++|+||.+.+..+.++.+.-.+.+.
T Consensus         3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~   50 (90)
T PRK00194          3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEE
Confidence            578999999999999999999999999999988888777776555554

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=97.98  E-value=5.9e-05  Score=55.13  Aligned_cols=34  Identities=18%  Similarity=0.270  Sum_probs=32.3

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      .|+|.|+||||++++|++.|+++|+||.+.+.++
T Consensus         1 ii~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~   34 (74)
T cd04875           1 ILTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFV   34 (74)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeee
Confidence            3789999999999999999999999999999986

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.97  E-value=0.00017  Score=66.71  Aligned_cols=49  Identities=18%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE--eeCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS--SDGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~--t~~g~~~d~f~v~   82 (315)
                      ....|+|.|+||||+.+.+++.|+++|+||.+.+.+  +..+.++-.+.+.
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~   58 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH   58 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence            456899999999999999999999999999999997  3334443333333

>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=97.85  E-value=6.6e-05  Score=52.27  Aligned_cols=67  Identities=18%  Similarity=0.341  Sum_probs=57.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ++|+|.++|+.||=.++++++-+.|++|..+.+.|.|....-+|.|.. .. ..+  +-+|..|+++|.++
T Consensus         1 tvitvnCPDktGLgcdlcr~il~fGl~i~rgd~sTDGkWCyiv~wVv~-~~-~~~--~~rW~lLK~RL~~~   67 (69)
T cd04894           1 SVITINCPDKTGLGCDLCRIILEFGLNITRGDDSTDGRWCYIVFWVVP-RP-PSI--KVRWDLLKNRLMSA   67 (69)
T ss_pred             CEEEEeCCCccCcccHHHHHHHHhceEEEecccccCCcEEEEEEEEec-CC-CCC--cccHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999999987 32 222  35899999988653

This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.82  E-value=0.00028  Score=52.26  Aligned_cols=64  Identities=19%  Similarity=0.289  Sum_probs=49.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      .+.|.|.+.||||+|++|+.++++.|+||.+.++.+  .++.+.-.|.+.-      .+.+.++.|.+.|..
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V------~d~~~L~~ii~~L~~   71 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV------KDLEHLNQIIRKLRQ   71 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE------SSHHHHHHHHHHHCT
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE------CCHHHHHHHHHHHHC
Confidence            357899999999999999999999999999999987  4778777777753      223456777777765

>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A

Probab=97.76  E-value=0.0003  Score=52.09  Aligned_cols=62  Identities=24%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL  196 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L  196 (315)
                      .+.|.|.+.||||+|++|+.++++.|+||.+..+.+.  ++.+.-.|.+.-       .+.+.++.+-+.|
T Consensus         6 ~~~l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V-------~d~~~L~~ii~~L   69 (80)
T PF13291_consen    6 PVRLRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEV-------KDLEHLNQIIRKL   69 (80)
T ss_dssp             EEEEEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEE-------SSHHHHHHHHHHH
T ss_pred             EEEEEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEE-------CCHHHHHHHHHHH
Confidence            4688999999999999999999999999999999985  466766676655       1245665555555

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.72  E-value=0.0009  Score=61.96  Aligned_cols=49  Identities=20%  Similarity=0.224  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      ....|+|.|+||||+.+.++++|+++|+||.+.+.++  .+|.+.-.+.+.
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~   55 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFE   55 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEE
Confidence            4678999999999999999999999999999999998  777655444543

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.69  E-value=0.0016  Score=60.19  Aligned_cols=51  Identities=18%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcC
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQ   84 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~   84 (315)
                      ....|+|.|+||||+.+++++.|+++|+||.+.+.++  .++.+.-.+.+..+
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p   58 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSE   58 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecC
Confidence            3568999999999999999999999999999999885  45566545555433

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=97.68  E-value=0.00086  Score=52.92  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=68.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCccc
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSE  209 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~  209 (315)
                      +|.|...++||-|+..+..|+++|+||..-.|.-.++.-.--..|..     |   ...    .+.|.+           
T Consensus         5 QISvFlENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~-----~---d~A----~~~Lee-----------   61 (142)
T COG4747           5 QISVFLENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDR-----P---DEA----HSVLEE-----------   61 (142)
T ss_pred             EEEEEecCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCC-----h---HHH----HHHHHH-----------
Confidence            67889999999999999999999999988777665554443344433     1   111    122211           


Q ss_pred             cccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHhhh
Q 021245          210 KVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVCTL  289 (315)
Q Consensus       210 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~~l  289 (315)
                                                              ++|.    |.+.+       |+-|...|+||=|..|+.+|
T Consensus        62 ----------------------------------------~gF~----Vr~~d-------VlaVEmeD~PG~l~~I~~vl   90 (142)
T COG4747          62 ----------------------------------------AGFT----VRETD-------VLAVEMEDVPGGLSRIAEVL   90 (142)
T ss_pred             ----------------------------------------CCcE----EEeee-------EEEEEecCCCCcHHHHHHHH
Confidence                                                    1111    22232       77788999999999999999


Q ss_pred             cCCceEEEEEE
Q 021245          290 TDMQYVVFHAA  300 (315)
Q Consensus       290 ~~~~i~I~~Ak  300 (315)
                      .+.++|+.++-
T Consensus        91 ~d~diNldYiY  101 (142)
T COG4747          91 GDADINLDYIY  101 (142)
T ss_pred             hhcCcCceeee
Confidence            99999987753

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.67  E-value=6.6e-05  Score=56.48  Aligned_cols=67  Identities=19%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+|+|.|+||||+.+.++++|+++|+||.+-.=.-..+..-..+.|.- +..     ......++.+|.+..
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~-~~~-----~~d~~~lr~~l~~~~   69 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI-SKE-----VVDFAALRDELAAEG   69 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC-ChH-----hccHHHHHHHHHHHH
Confidence            4689999999999999999999999999998654444566666777765 211     123466777775544

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.59  E-value=0.00081  Score=48.70  Aligned_cols=62  Identities=15%  Similarity=0.176  Sum_probs=47.2

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      |.|.++|+||+|++|+.++++.|.||.+....+ .+|.+...|.+.-.      +...++.+.+.|...
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~------~~~~l~~i~~~L~~i   64 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP------SEEHAETIVAAVRAL   64 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC------CHHHHHHHHHHHhcC
Confidence            678999999999999999999999999888766 35776666666422      234566777776553

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains

Probab=97.55  E-value=0.0011  Score=48.06  Aligned_cols=60  Identities=12%  Similarity=0.241  Sum_probs=45.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      +.|.+.||||+|++|+.++++.|+||.+....+.. +.+...|.+.-       .+.++++.+.+.|+
T Consensus         2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev-------~~~~~l~~i~~~L~   62 (74)
T cd04887           2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDA-------PSEEHAETIVAAVR   62 (74)
T ss_pred             EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEc-------CCHHHHHHHHHHHh
Confidence            67899999999999999999999999998887654 56655666654       12346666666663

The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=97.54  E-value=0.00032  Score=63.03  Aligned_cols=49  Identities=16%  Similarity=0.269  Sum_probs=41.3

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      ....+++.|+|++|+.+.|++.|++.||||.+++.++  .+|+++-.....
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~   56 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFE   56 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEe
Confidence            5679999999999999999999999999999999997  357765443333

>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.49  E-value=0.00082  Score=62.21  Aligned_cols=66  Identities=17%  Similarity=0.237  Sum_probs=50.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe--eCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT--HNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t--~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ....|++.|+||||+.+.|+++|+++|+||.+.+..+  .++.....+.+.-  +..+    ..++.|+++|.+
T Consensus         5 ~~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~--~~~~----~~~~~L~~~L~~   72 (286)
T PRK06027          5 QRYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG--DGLI----FNLETLRADFAA   72 (286)
T ss_pred             ceEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe--CCCC----CCHHHHHHHHHH
Confidence            5678999999999999999999999999999999998  6665444444433  1112    235778887754

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=97.45  E-value=9.2e-05  Score=55.70  Aligned_cols=48  Identities=23%  Similarity=0.294  Sum_probs=40.1

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ...|||.+.||||+.+.++++|+++|.||++-+.+-.+|++--.+.|.
T Consensus         3 ~avITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~   50 (90)
T COG3830           3 RAVITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVD   50 (90)
T ss_pred             eEEEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEc
Confidence            468999999999999999999999999999666655777776555554

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=97.37  E-value=0.00073  Score=62.58  Aligned_cols=67  Identities=12%  Similarity=0.238  Sum_probs=46.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE--eeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW--THNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~--t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+.+-+  +..+.....+.+.+ .....+    ..+.|+++|.+
T Consensus         8 ~~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~~-~~~~~~----~~~~l~~~l~~   76 (289)
T PRK13010          8 PSYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFHA-QSAEAA----SVDTFRQEFQP   76 (289)
T ss_pred             cCEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEEc-CCCCCC----CHHHHHHHHHH
Confidence            356899999999999999999999999999999987  33344444433443 111111    23566776654

>TIGR00655 PurU formyltetrahydrofolate deformylase

Probab=97.35  E-value=0.0011  Score=61.18  Aligned_cols=63  Identities=17%  Similarity=0.159  Sum_probs=48.2

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .|++.|+||||+.+.|+++|+++|+||.+.+-++.  ++.....+.+.. +. ..+    ..+.|+++|.+
T Consensus         2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~-~~-~~~----~~~~l~~~l~~   66 (280)
T TIGR00655         2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQL-EG-FRL----EESSLLAAFKS   66 (280)
T ss_pred             EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEe-CC-CCC----CHHHHHHHHHH
Confidence            58999999999999999999999999999998885  366666666665 32 121    23566766655

This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.

>PRK13011 formyltetrahydrofolate deformylase; Reviewed

Probab=97.31  E-value=0.0015  Score=60.56  Aligned_cols=66  Identities=11%  Similarity=0.151  Sum_probs=48.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ....++|.|+||||+.++++++|+++|+||.+.+..+..  +.....+.+.. +.+.      ..+.|+++|.+.
T Consensus         6 ~~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~-p~~~------~~~~L~~~L~~l   73 (286)
T PRK13011          6 DTFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHS-EEGL------DEDALRAGFAPI   73 (286)
T ss_pred             ceEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEec-CCCC------CHHHHHHHHHHH
Confidence            357899999999999999999999999999999988542  44444555554 2221      246677777553

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.28  E-value=0.0031  Score=44.72  Aligned_cols=60  Identities=18%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-----CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-----NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-----~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      +.|.++|+||+|++|+.+|+++|+||.+......     .+...-.|.+..       .+.+.++.+.+.|.
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~-------~~~~~l~~l~~~l~   65 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLET-------RGAEHIEEIIAALR   65 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEe-------CCHHHHHHHHHHHH
Confidence            3578899999999999999999999998776543     233444444443       12345555655553

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=97.28  E-value=0.0019  Score=47.04  Aligned_cols=35  Identities=20%  Similarity=0.360  Sum_probs=32.5

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      .+.|.+.||+|++++|+.++++.|+||.+..+.+.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~   36 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK   36 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC
Confidence            47899999999999999999999999999998775

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.22  E-value=0.0013  Score=45.03  Aligned_cols=46  Identities=22%  Similarity=0.345  Sum_probs=39.0

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      +.+..+|+||.+++++..|.++|+||.+..+...+ +...-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            35789999999999999999999999999988765 66766776654

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=97.10  E-value=0.004  Score=44.18  Aligned_cols=61  Identities=18%  Similarity=0.229  Sum_probs=41.8

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      +.|.++|+||+|++++.+|++.|+||.+......     .+.....|.+...      +....+.+.+.|..
T Consensus         1 ~~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~l~~   66 (73)
T cd04886           1 LRVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR------GAEHIEEIIAALRE   66 (73)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC------CHHHHHHHHHHHHH
Confidence            3578899999999999999999999997776542     3555444444321      12334566666544

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK07431 aspartate kinase; Provisional

Probab=97.04  E-value=0.14  Score=52.15  Aligned_cols=193  Identities=13%  Similarity=0.125  Sum_probs=114.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC-
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT-  109 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~-  109 (315)
                      +...|.|.+.   +.+|+.+++..+|.+.|++|....  + .+.. -.|.|...+.     ++..+.|.+.+....... 
T Consensus       347 ~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s-Se~~-Is~vv~~~d~-----~~av~~Lh~~f~~~~~~~~  417 (587)
T PRK07431        347 NVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T-SEVK-VSCVIDAEDG-----DKALRAVCEAFELEDSQIE  417 (587)
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c-CCCE-EEEEEcHHHH-----HHHHHHHHHHhccCCcccc
Confidence            6778888886   899999999999999999997444  3 2222 2455543211     245666776664433211 


Q ss_pred             --C-CcccCCceeee-ecCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEe-eCC--eEEEEEEEEeCCCCC
Q 021245          110 --A-GAKTWPSKQVG-VHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWT-HNR--RIACVLYVNDDTTCR  181 (315)
Q Consensus       110 --~-~~~~~~~~~v~-~~~~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t-~~~--~~~d~F~V~~~~~g~  181 (315)
                        + .....-. .+. .....+...|++. .++++|+++++.+.|+++|++|..-.... .++  ..--.|.+..     
T Consensus       418 ~~~~~~~~~~~-~v~gIa~~~~~~~i~l~~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~-----  491 (587)
T PRK07431        418 INPTASGQDEP-EVRGVALDRNQAQLAIRNVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPK-----  491 (587)
T ss_pred             cCccccCCCCC-cEEEEEccCCEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcH-----
Confidence              1 0010000 111 1223345555554 56889999999999999999998543221 121  2223344432     


Q ss_pred             cCCChHHHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEe
Q 021245          182 AVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVE  261 (315)
Q Consensus       182 ~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~  261 (315)
                           ....+..+.+.+ |....+                                                 ...+.+.
T Consensus       492 -----~~~~~~~~~l~~-l~~~~~-------------------------------------------------~~~i~~~  516 (587)
T PRK07431        492 -----EDREAAQKVLRE-LAKQLP-------------------------------------------------GAEVEDG  516 (587)
T ss_pred             -----HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceEEEe
Confidence                 122222222221 221111                                                 0123333


Q ss_pred             ecCCCCeeEEEEEeC---CCCchHHHHHhhhcCCceEEEEEE
Q 021245          262 RLEDKGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       262 ~~~~~~~tvieV~a~---DRpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                          .+++++.|.+.   .+||++.++.++|.+.|++|+...
T Consensus       517 ----~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~  554 (587)
T PRK07431        517 ----PAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA  554 (587)
T ss_pred             ----CCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee
Confidence                35788888876   889999999999999999997655

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=97.03  E-value=0.0031  Score=44.80  Aligned_cols=45  Identities=16%  Similarity=0.324  Sum_probs=37.2

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN  175 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~  175 (315)
                      ..+.|..+|+||.|++++..|+++|+||.+..++..++.  .++.+.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~   46 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLI   46 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEE
Confidence            467889999999999999999999999999988776553  444443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=97.02  E-value=0.0043  Score=46.41  Aligned_cols=63  Identities=21%  Similarity=0.286  Sum_probs=46.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      -.+.+...|+||+|++|++.|+..|+||.+-.+....  +-...++.+..   |    ++..++++.+.|.+
T Consensus         3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~---~----d~~~ieqI~kQL~K   67 (84)
T PRK13562          3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDI---Q----DDTSLHILIKKLKQ   67 (84)
T ss_pred             EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeC---C----CHHHHHHHHHHHhC
Confidence            3688999999999999999999999999998887543  34445555541   1    23466777777744

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=97.01  E-value=0.0027  Score=43.47  Aligned_cols=46  Identities=26%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEc
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVID   83 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~   83 (315)
                      |.+..+|+||.+++++..|.+.|+||....++..+ +..+-.|.+.+
T Consensus         1 ~~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~   47 (56)
T cd04889           1 LSVFVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD   47 (56)
T ss_pred             CEEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence            45789999999999999999999999999887644 66766666643

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=97.00  E-value=0.008  Score=42.84  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      ..+.+..+|+||.|+++++.|+++|+||.+......
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            467889999999999999999999999998877665

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=96.99  E-value=0.0059  Score=52.23  Aligned_cols=64  Identities=17%  Similarity=0.298  Sum_probs=46.7

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+.+.+.|+||+|++|+++|+.+|+||.+-.+...  .+....++.+..   +     +..+++|++.|.+..
T Consensus         3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~---~-----~~~ieqL~kQL~KLi   68 (174)
T CHL00100          3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPG---D-----DRTIEQLTKQLYKLV   68 (174)
T ss_pred             EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEEC---C-----HHHHHHHHHHHHHHh
Confidence            468999999999999999999999999999998753  244444444433   1     223567777775544

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.98  E-value=0.0077  Score=43.61  Aligned_cols=61  Identities=21%  Similarity=0.340  Sum_probs=44.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChH-HHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQT-RLSLMEEQLK  197 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~-~~~~l~~~L~  197 (315)
                      .+.+.+.|+||++++|++.|+++|+||......+.. +.+.-.|.+.. .      +.+ .++++-+.|+
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v-~------~~~~~l~~l~~~L~   64 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDT-S------TMNGDIDELLEELR   64 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEc-C------chHHHHHHHHHHHh
Confidence            578999999999999999999999999988765543 55555566654 1      123 5566666663

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.95  E-value=0.0064  Score=46.66  Aligned_cols=64  Identities=30%  Similarity=0.445  Sum_probs=45.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .....|.+...|+||+|++|++.|+..|.||.+-.+.-..  +....++.+.+         ++.++++.+.|.+
T Consensus         6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~---------~~~i~Qi~kQL~K   71 (96)
T PRK08178          6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND---------DQRLEQMISQIEK   71 (96)
T ss_pred             CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC---------chHHHHHHHHHhC
Confidence            3456789999999999999999999999999998876543  22333333321         2356777777744

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.92  E-value=0.0069  Score=44.61  Aligned_cols=62  Identities=18%  Similarity=0.258  Sum_probs=44.9

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+.+...|+||+|++++++|+..|.||.+..+.-..  +....++.+.+        ++..+++|.+.|.+
T Consensus         3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~--------~~~~i~qi~kQL~K   66 (76)
T PRK06737          3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVC--------TENEATLLVSQLKK   66 (76)
T ss_pred             EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            4688999999999999999999999999988876433  33344444433        13456677777643

>PRK07431 aspartate kinase; Provisional

Probab=96.87  E-value=0.11  Score=53.00  Aligned_cols=191  Identities=15%  Similarity=0.163  Sum_probs=109.2

Q ss_pred             ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccCCceee
Q 021245           42 SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTWPSKQV  120 (315)
Q Consensus        42 ~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~v  120 (315)
                      ..+.+|++++|...|++.|+||.-..... .++..--.|.+...+-     +...+.|++ +...+..         ..+
T Consensus       278 ~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~-----~~~~~~l~~-l~~~~~~---------~~i  342 (587)
T PRK07431        278 VPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL-----KKAEAVAEA-IAPALGG---------AEV  342 (587)
T ss_pred             CCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH-----HHHHHHHHH-HHHHcCC---------CcE
Confidence            46889999999999999999999554433 2332333577643211     111122222 2211110         011


Q ss_pred             eecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          121 GVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       121 ~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .  ...+...|.+.+.   ++||+++++.++|++.|++|....  +  ....-.|.|..          +..++.-+.|+
T Consensus       343 ~--~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--s--Se~~Is~vv~~----------~d~~~av~~Lh  406 (587)
T PRK07431        343 L--VETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--T--SEVKVSCVIDA----------EDGDKALRAVC  406 (587)
T ss_pred             E--EeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--c--CCCEEEEEEcH----------HHHHHHHHHHH
Confidence            1  1235677888875   799999999999999999996443  2  22333444443          12344445566


Q ss_pred             HHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEE-eC
Q 021245          198 NILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVK-CR  276 (315)
Q Consensus       198 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~-a~  276 (315)
                      +.+.....                  ...+...+.+ ..               -..=+-|..    ..+...+.|. ..
T Consensus       407 ~~f~~~~~------------------~~~~~~~~~~-~~---------------~~~v~gIa~----~~~~~~i~l~~~~  448 (587)
T PRK07431        407 EAFELEDS------------------QIEINPTASG-QD---------------EPEVRGVAL----DRNQAQLAIRNVP  448 (587)
T ss_pred             HHhccCCc------------------ccccCccccC-CC---------------CCcEEEEEc----cCCEEEEEECCCC
Confidence            66543322                  0001111000 00               000011222    2456677665 56


Q ss_pred             CCCchHHHHHhhhcCCceEEEEEEE
Q 021245          277 DRAKLMFDIVCTLTDMQYVVFHAAI  301 (315)
Q Consensus       277 DRpGLL~~I~~~l~~~~i~I~~AkI  301 (315)
                      +.||++++|...|+++|++|.+-.-
T Consensus       449 ~~~g~~a~if~~l~~~~i~id~i~~  473 (587)
T PRK07431        449 DRPGMAASIFGALAEANISVDMIVQ  473 (587)
T ss_pred             CCccHHHHHHHHHHHcCCeEEEEEe
Confidence            8899999999999999999998754

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=96.85  E-value=0.0052  Score=43.65  Aligned_cols=39  Identities=28%  Similarity=0.361  Sum_probs=34.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW   74 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~   74 (315)
                      ..++|..+|+||.|++++..|.+.|+||....++..++.
T Consensus         2 ~ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~   40 (66)
T cd04908           2 KQLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSEF   40 (66)
T ss_pred             EEEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence            367899999999999999999999999998888765443

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=96.83  E-value=0.012  Score=42.58  Aligned_cols=63  Identities=13%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      .+.|.++|+||++++|+..|+++|.||......+ .+|.+--.|.+...+.     +..+++|.+.|..
T Consensus         2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~-----~~~l~~l~~~L~~   65 (76)
T cd04888           2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM-----NGDIDELLEELRE   65 (76)
T ss_pred             EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch-----HHHHHHHHHHHhc
Confidence            5789999999999999999999999999777655 3465555566643211     1245666666655

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.80  E-value=0.016  Score=40.88  Aligned_cols=60  Identities=22%  Similarity=0.373  Sum_probs=42.4

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .+.+.+.|+||++++|+.+|+++|++|.+....+. + +.+.-.|.+..       .+ ..++.+.+.|.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~l~~~l~   63 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG-------DD-DVIEQIVKQLN   63 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC-------CH-HHHHHHHHHHh
Confidence            36788999999999999999999999999988765 3 33433444432       12 34555555553

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.79  E-value=0.011  Score=41.56  Aligned_cols=44  Identities=20%  Similarity=0.339  Sum_probs=37.4

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHV   81 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v   81 (315)
                      +.|.++|++|++++++.+|++.|+||.+..+...  ++...-.|.+
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v   47 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV   47 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence            5789999999999999999999999999888764  3666656666

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.75  E-value=0.014  Score=42.00  Aligned_cols=35  Identities=23%  Similarity=0.426  Sum_probs=31.3

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      .+.+.+.|+||++++++++|+++|+||......+.
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~   36 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEA   36 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEccc
Confidence            46788999999999999999999999998887654

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.74  E-value=0.012  Score=49.55  Aligned_cols=64  Identities=19%  Similarity=0.360  Sum_probs=48.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+.|...|+||.|++|++.|+++|+||.+.-+...+  +...-++.|..        ++..++++.+.|.+..
T Consensus         2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~--------d~~~i~qi~kQl~Kli   67 (157)
T TIGR00119         2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG--------DDKVLEQITKQLNKLV   67 (157)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhcCc
Confidence            3688999999999999999999999999988877554  44555566543        1346677777775544

acetohydroxyacid synthase is a synonym.

>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]

Probab=96.71  E-value=0.0083  Score=54.12  Aligned_cols=37  Identities=24%  Similarity=0.454  Sum_probs=34.8

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t  163 (315)
                      ..+++++.|+|+||+.+.|++.|+++|+||.++.=++
T Consensus         6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~   42 (287)
T COG0788           6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFD   42 (287)
T ss_pred             cceEEEEecCCCCCcHHHHHHHHHHcCCceeeccccc
Confidence            5689999999999999999999999999999999885

>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.70  E-value=0.0061  Score=42.86  Aligned_cols=45  Identities=24%  Similarity=0.426  Sum_probs=38.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEE
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVN  175 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~  175 (315)
                      +.+.+.|+||++++|+++|+++|+||.+......+  +...-.|.+.
T Consensus         2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~   48 (71)
T cd04879           2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVD   48 (71)
T ss_pred             EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcC
Confidence            57889999999999999999999999999988754  5565666663

ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active

>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein

Probab=96.67  E-value=0.0075  Score=43.89  Aligned_cols=37  Identities=19%  Similarity=0.339  Sum_probs=33.3

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW   74 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~   74 (315)
                      .|.|.+.||+|++++|+.++++.|.||....+.+. +.
T Consensus         2 ~l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~   38 (74)
T cd04877           2 RLEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GR   38 (74)
T ss_pred             EEEEEEEccchHHHHHHHHHHHCCCceEEEEEecC-Ce
Confidence            47899999999999999999999999999988765 44

ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.64  E-value=0.017  Score=40.79  Aligned_cols=47  Identities=19%  Similarity=0.427  Sum_probs=37.1

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      ++.+.++|+||.|++++..|+++++||.+....+.+ +...-.|.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~   49 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEG   49 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEec
Confidence            578899999999999999999999999988877653 44444444443

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=96.59  E-value=0.02  Score=48.43  Aligned_cols=64  Identities=14%  Similarity=0.357  Sum_probs=48.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+.|...|+||.|++|++.|+.+|+||.+..+....  +...-++.+..        ++..++++.+.|.+..
T Consensus         3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~--------~~~~i~qi~kQl~KLi   68 (161)
T PRK11895          3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG--------DEQVIEQITKQLNKLI   68 (161)
T ss_pred             EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC--------CHHHHHHHHHHHhccc
Confidence            4688999999999999999999999999988776543  44555565543        1345677777775543

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.59  E-value=0.017  Score=40.59  Aligned_cols=46  Identities=24%  Similarity=0.474  Sum_probs=35.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~-~~~~d~F~V~~  176 (315)
                      +.+.++|+||.+++++..|+++|++|.+...... + +...-.+.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~   49 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQ   49 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCC
Confidence            5688999999999999999999999998887663 2 44443444433

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=96.58  E-value=0.015  Score=42.84  Aligned_cols=61  Identities=21%  Similarity=0.355  Sum_probs=45.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+.+...|+||.|++++++|+..|.||.+..+.-..  +...-++.+.+         +..++.|.+.|.+
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~---------~~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVAS---------ERPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECC---------CchHHHHHHHHhc
Confidence            5789999999999999999999999999999887542  44444555532         1244666666643

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=96.57  E-value=0.018  Score=40.46  Aligned_cols=44  Identities=30%  Similarity=0.409  Sum_probs=34.6

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHV   81 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v   81 (315)
                      +.+.++|+||.+++++..|+++|++|....... . ++...-.+.+
T Consensus         2 l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v   47 (71)
T cd04903           2 LIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEV   47 (71)
T ss_pred             EEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEe
Confidence            578899999999999999999999999887765 2 3554433333

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.56  E-value=0.0028  Score=45.07  Aligned_cols=44  Identities=20%  Similarity=0.348  Sum_probs=35.4

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHV   81 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v   81 (315)
                      +++.+.|+||++++++.+|++.|+||......+.+|.+.-.|.+
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~   45 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDI   45 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEc
Confidence            67899999999999999999999999876655555666544544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=96.55  E-value=0.016  Score=43.30  Aligned_cols=64  Identities=13%  Similarity=0.131  Sum_probs=45.3

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG  106 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~  106 (315)
                      .+.+...|+||.|++++++|+..|+||.+-.+..  ..|..--++.+.  .|.    +...++|.+.|....
T Consensus         4 ~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~--~~d----~~~ieqI~kQL~Kli   69 (84)
T PRK13562          4 ILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD--IQD----DTSLHILIKKLKQQI   69 (84)
T ss_pred             EEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe--CCC----HHHHHHHHHHHhCCc
Confidence            5889999999999999999999999999877763  334443233332  122    345677777776543

>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a

Probab=96.54  E-value=0.017  Score=40.87  Aligned_cols=45  Identities=18%  Similarity=0.196  Sum_probs=36.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHV   81 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v   81 (315)
                      ++.+.++|+||.+++++..|+++|++|.+....+. ++...-.+.+
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~   47 (72)
T cd04874           2 ALSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYMEL   47 (72)
T ss_pred             eEEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEE
Confidence            57899999999999999999999999998887764 3444323333

a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria

Probab=96.49  E-value=0.0035  Score=44.55  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=36.4

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      +.+.+.|+||++++++.+|++.|+||.+....+.++.+.-.|.+..
T Consensus         2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~   47 (69)
T cd04901           2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS   47 (69)
T ss_pred             EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence            5678999999999999999999999988765554455555555544

The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-

>PRK08577 hypothetical protein; Provisional

Probab=96.47  E-value=0.035  Score=45.48  Aligned_cols=52  Identities=31%  Similarity=0.486  Sum_probs=41.3

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEE
Q 021245          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVN  175 (315)
Q Consensus       124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~  175 (315)
                      +....+.+.|.+.|+||+|++|+++|+++|+||.+....+..  +.+.-.|.+.
T Consensus        52 ~~k~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         52 PGKKLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             CCccEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            445688999999999999999999999999999998887653  3333444443

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.41  E-value=0.012  Score=41.11  Aligned_cols=44  Identities=32%  Similarity=0.503  Sum_probs=34.6

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHV   81 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v   81 (315)
                      +.|..+|+||-+++++++|+++|+||.+...+..  .|...-.|.+
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v   47 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT   47 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence            6788999999999999999999999997777653  3554433444

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=96.36  E-value=0.022  Score=40.48  Aligned_cols=36  Identities=31%  Similarity=0.409  Sum_probs=32.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD   71 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~   71 (315)
                      ..+.+..+|+||.|+++++.|+++|+||.....+..
T Consensus         2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~   37 (69)
T cd04909           2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEI   37 (69)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence            468899999999999999999999999998877653

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=96.34  E-value=0.033  Score=42.79  Aligned_cols=64  Identities=9%  Similarity=0.203  Sum_probs=44.7

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      +...|.++..|+||.|++|++.|+..|+||.+-.+. | ..+..-  +.+.-. +     +...++|.+.|...
T Consensus         7 ~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSR--mtivv~-~-----~~~i~Qi~kQL~KL   72 (96)
T PRK08178          7 DNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSR--IWLLVN-D-----DQRLEQMISQIEKL   72 (96)
T ss_pred             CCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceE--EEEEEc-C-----chHHHHHHHHHhCC
Confidence            445689999999999999999999999999977775 3 333332  233221 2     13566777776554

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.28  E-value=0.035  Score=39.99  Aligned_cols=34  Identities=15%  Similarity=0.260  Sum_probs=30.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      +.+..+|+||-|+++++.|+++|+||.+......
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~   35 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFE   35 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence            5788999999999999999999999998866544

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=96.27  E-value=0.067  Score=39.40  Aligned_cols=48  Identities=21%  Similarity=0.314  Sum_probs=38.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      +.+.+..+|+||.|+++...|+++|+||.+-...... +...-.|+|..
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~   50 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDF   50 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEE
Confidence            4567788999999999999999999999988766553 34556777765

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains

Probab=96.26  E-value=0.014  Score=41.91  Aligned_cols=45  Identities=18%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-C-CEEEEEEEE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-G-GWFMDVFHV   81 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~-g~~~d~f~v   81 (315)
                      -|.+.+.|+||++++++.+|+++|+||......+. + +.+.-.+.+
T Consensus         2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~   48 (79)
T cd04881           2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVT   48 (79)
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEE
Confidence            36788999999999999999999999998877653 3 544433333

The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=96.23  E-value=0.04  Score=40.54  Aligned_cols=62  Identities=11%  Similarity=0.151  Sum_probs=43.7

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      .+.+...|+||.|++++++++..|+||.+-.+. | ..|..--++.+.   |.    ++..++|.+.|...
T Consensus         4 tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~---~~----~~~i~qi~kQL~KL   67 (76)
T PRK06737          4 TFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV---CT----ENEATLLVSQLKKL   67 (76)
T ss_pred             EEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE---CC----HHHHHHHHHHHhCC
Confidence            588999999999999999999999999977776 3 334443233332   22    23456666666554

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.22  E-value=0.023  Score=40.59  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=35.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      +.+..+|+||.++++++.|+++|+||.+...+.  .++...-.|.+.
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~   48 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVD   48 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeC
Confidence            467899999999999999999999999877654  356665455553

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=96.22  E-value=0.054  Score=45.13  Aligned_cols=76  Identities=14%  Similarity=0.037  Sum_probs=54.3

Q ss_pred             eEEEecCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245           24 RASVDNSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (315)
Q Consensus        24 ~v~i~~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (315)
                      +.-+.....+....|.+.+.|+||+|++|+.+|+++|+||...+... .+|.+--.|.+...+.     ...++.|...|
T Consensus        58 vf~~~~~~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~-----~~~L~~Li~~L  132 (147)
T PRK04435         58 VFPFDEMVKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM-----EGDIDELLEKL  132 (147)
T ss_pred             eECccccCCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh-----HHHHHHHHHHH
Confidence            55555555668889999999999999999999999999999877655 4566655566653211     12455555555


Q ss_pred             CC
Q 021245          103 GP  104 (315)
Q Consensus       103 ~~  104 (315)
                      ..
T Consensus       133 ~~  134 (147)
T PRK04435        133 RN  134 (147)
T ss_pred             Hc
Confidence            44

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=96.19  E-value=0.0011  Score=47.93  Aligned_cols=34  Identities=24%  Similarity=0.505  Sum_probs=31.8

Q ss_pred             EEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEe
Q 021245          270 VVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (315)
Q Consensus       270 vieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T  303 (315)
                      .+|+++.-||-.+||++-||+.+++.|++|.|.-
T Consensus         2 PVElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR   35 (77)
T cd04898           2 PVELSGKGRPRVFYDITLALKKLGICIFSAEIGR   35 (77)
T ss_pred             cccccCCCCcceeeehHHHHHHhccEEEehhhhh
Confidence            4789999999999999999999999999999964

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=96.18  E-value=0.28  Score=41.33  Aligned_cols=105  Identities=17%  Similarity=0.193  Sum_probs=66.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~  114 (315)
                      .+.|...|+||.|++++++|+..|+||.+-.+.. . .|...-++.+.   +    ++...++|.+.|....+.      
T Consensus         3 ~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~---~----d~~~i~qi~kQl~Kli~V------   69 (157)
T TIGR00119         3 ILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVV---G----DDKVLEQITKQLNKLVDV------   69 (157)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEE---C----CHHHHHHHHHHHhcCccE------
Confidence            5788999999999999999999999999888875 3 46665555554   2    134567777777664431      


Q ss_pred             CCceeeee-----cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245          115 WPSKQVGV-----HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       115 ~~~~~v~~-----~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                         .++..     .-......+.|.+...  --.+|.+.....+..|.+.
T Consensus        70 ---~~V~~~~~~~~v~rEl~LiKv~~~~~--~r~~i~~i~~~f~a~ivdv  114 (157)
T TIGR00119        70 ---IKVSDLTESAIVERELCLVKVSAPGE--GRDEIIRLTNIFRGRIVDV  114 (157)
T ss_pred             ---EEEEecCCCcceeeEEEEEEEECCcc--CHHHHHHHHHHhCCEEEEe
Confidence               11111     1112445556666422  2345556666666666654

acetohydroxyacid synthase is a synonym.

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=96.17  E-value=0.014  Score=40.77  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      +.+..+|+||-|++++++|+++|+||.+...+..
T Consensus         2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~   35 (65)
T cd04882           2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVE   35 (65)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEcc
Confidence            6788999999999999999999999988876554

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS)

Probab=96.13  E-value=0.028  Score=39.50  Aligned_cols=46  Identities=17%  Similarity=0.178  Sum_probs=36.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI   82 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~   82 (315)
                      .+.+.+.|+||++++++..|+++|.+|......+.  ++.+.-.|.+.
T Consensus         2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   49 (72)
T cd04878           2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVE   49 (72)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEE
Confidence            36788999999999999999999999998888764  45554344444

ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of

>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria

Probab=96.11  E-value=0.046  Score=39.33  Aligned_cols=62  Identities=19%  Similarity=0.191  Sum_probs=41.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      +.+..+|+||-|++++..|+++|.||.+...+..   .+.-.-.+.+.- +.     +...+.|.+.|.+.
T Consensus         2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~-e~-----~~~~~~i~~~L~~~   66 (72)
T cd04884           2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTP-MD-----RSKENELIEELKAK   66 (72)
T ss_pred             EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEE-ec-----chHHHHHHHHHhCc
Confidence            6788999999999999999999999997765542   233322334332 11     12356777777554

This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=96.10  E-value=0.069  Score=36.47  Aligned_cols=46  Identities=28%  Similarity=0.437  Sum_probs=36.2

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      +.+.+.|+||.+.+++..|++++++|.+..+...+ +...-.|.+..
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~   47 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV   47 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence            35779999999999999999999999999887665 44444454443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>PRK08577 hypothetical protein; Provisional

Probab=96.09  E-value=0.087  Score=43.16  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=39.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~   82 (315)
                      ....|.|.+.|+||+|++++++|+++|.||.+....+.  ++.+.-.|.+.
T Consensus        55 ~~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~ve  105 (136)
T PRK08577         55 KLVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVD  105 (136)
T ss_pred             cEEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEE
Confidence            47789999999999999999999999999998887663  45444444443

>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH)

Probab=96.05  E-value=0.017  Score=41.25  Aligned_cols=46  Identities=24%  Similarity=0.456  Sum_probs=37.1

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      +.+..+|+||.++++++.|+++|+||.+......  ++...-+|.+..
T Consensus         2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~   49 (73)
T cd04902           2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE   49 (73)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence            4578999999999999999999999998877653  356666666644

The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden

>PRK04435 hypothetical protein; Provisional

Probab=95.76  E-value=0.11  Score=43.26  Aligned_cols=67  Identities=19%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQL  196 (315)
Q Consensus       124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L  196 (315)
                      .......+.+.+.|+||+|++|+++|+++|+||......+. ++.+.-.|.+.. .+  .   ...++.|-+.|
T Consensus        65 ~~~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVev-s~--~---~~~L~~Li~~L  132 (147)
T PRK04435         65 VKGKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDT-SS--M---EGDIDELLEKL  132 (147)
T ss_pred             CCCcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEe-CC--h---HHHHHHHHHHH
Confidence            34577899999999999999999999999999998876543 355555666654 11  1   12555555555

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=95.72  E-value=0.06  Score=39.64  Aligned_cols=61  Identities=15%  Similarity=0.248  Sum_probs=43.9

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      ..+.+...|+||.|+++++++...|+||.+-.+-.  .++..--++.+  .+.      ...++|.+.|..
T Consensus         4 ~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v--~~~------~~i~ql~kQL~K   66 (76)
T PRK11152          4 HQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV--ASE------RPIDLLSSQLNK   66 (76)
T ss_pred             EEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE--CCC------chHHHHHHHHhc
Confidence            46889999999999999999999999999888864  44544434444  222      235566666554

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=95.71  E-value=0.031  Score=47.81  Aligned_cols=34  Identities=12%  Similarity=0.231  Sum_probs=31.7

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      .+.|.+.|+||++++++++|+..|+||.+-....
T Consensus         4 ~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~   37 (174)
T CHL00100          4 TLSVLVEDESGVLTRIAGLFARRGFNIESLAVGP   37 (174)
T ss_pred             EEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeE
Confidence            6889999999999999999999999999888864

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=95.71  E-value=0.11  Score=43.87  Aligned_cols=105  Identities=18%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCccc
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKT  114 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~  114 (315)
                      .+.|..+|+||.|++|+++|+..|+||.+-.+.. . .|...-++.+.   |.    +...++|.+.|....+.      
T Consensus         4 ~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~---~~----~~~i~qi~kQl~KLidV------   70 (161)
T PRK11895          4 TLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTS---GD----EQVIEQITKQLNKLIDV------   70 (161)
T ss_pred             EEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEE---CC----HHHHHHHHHHHhccccE------
Confidence            5789999999999999999999999999888764 3 46665455553   21    34566777776654321      


Q ss_pred             CCceeeee-----cCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245          115 WPSKQVGV-----HSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       115 ~~~~~v~~-----~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                         .+|..     .-......+.|.+..  .--.++.......+.+|.+.
T Consensus        71 ---~~V~~~~~~~~v~rEl~LiKv~~~~--~~r~~i~~i~~~f~a~ivdv  115 (161)
T PRK11895         71 ---LKVVDLTEEAHVERELALVKVRASG--ENRAEILRLADIFRAKIVDV  115 (161)
T ss_pred             ---EEEEecCCcchhheEEEEEEEECCc--ccHHHHHHHHHHhCCEEEEe
Confidence               11111     011234455555532  11346666666667777654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.67  E-value=0.05  Score=35.29  Aligned_cols=35  Identities=37%  Similarity=0.619  Sum_probs=31.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~  165 (315)
                      |.+.++|+||++++++++|+++|++|.........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~   35 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSG   35 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence            46789999999999999999999999999887653

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.64  E-value=0.064  Score=38.25  Aligned_cols=47  Identities=19%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      +.+.+..+|+||.+++++..|+++|+||.+....-  .++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            57889999999999999999999999999776543  234554445543

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains

Probab=95.53  E-value=0.14  Score=34.79  Aligned_cols=45  Identities=18%  Similarity=0.440  Sum_probs=35.4

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVI   82 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~   82 (315)
                      |.+.++|+||.+..++..|.+.+++|.+..+...+ +...-.|.+.
T Consensus         1 l~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~   46 (71)
T cd04876           1 IRVEAIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLE   46 (71)
T ss_pred             CEEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEE
Confidence            35779999999999999999999999988887654 5443344443

ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i

>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme

Probab=95.50  E-value=0.13  Score=37.80  Aligned_cols=47  Identities=30%  Similarity=0.443  Sum_probs=34.6

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEE
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVI   82 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~   82 (315)
                      +.+.+..+|+||.|+++...|+++|+||.+-.... .++...-.|+|.
T Consensus         2 ~sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd   49 (80)
T cd04905           2 TSIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFID   49 (80)
T ss_pred             EEEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEE
Confidence            35667789999999999999999999999776554 222222346664

The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=95.49  E-value=0.071  Score=38.02  Aligned_cols=47  Identities=28%  Similarity=0.442  Sum_probs=36.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEE
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVN  175 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~  175 (315)
                      +.+.+..+|+||.+.+++++|+++|+||.+....-.  ++...-.|.+.
T Consensus         2 ~~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~   50 (72)
T cd04883           2 SQIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQ   50 (72)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEe
Confidence            578899999999999999999999999998765433  23444455554

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=95.47  E-value=0.53  Score=45.57  Aligned_cols=106  Identities=17%  Similarity=0.269  Sum_probs=66.6

Q ss_pred             CeEEEEEE---ecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVD---SVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~---~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +...|+|.   ..+++|.++++..+|.+.|++|........+ .. -.|.|...+.     ++..+.|.+.+... ..  
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~-~~-Is~~V~~~d~-----~~a~~~L~~~~~~~-~~--  328 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSE-TS-ISLTVDETDA-----DEAVRALKDQSGAA-GL--  328 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCC-ce-EEEEEeHHHH-----HHHHHHHHHHHHhc-CC--
Confidence            45567777   5688999999999999999999833322122 11 2456632110     12333444333111 00  


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~  158 (315)
                             ..+  ....+...|.+.+.   ++||+++++..+|++.|+||..
T Consensus       329 -------~~i--~~~~~~a~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       329 -------DRV--EVEEGLAKVSIVGAGMVGAPGVASEIFSALEEKNINILM  370 (401)
T ss_pred             -------ceE--EEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEE
Confidence                   011  12236677778775   7999999999999999999984

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK07334 threonine dehydratase; Provisional

Probab=95.47  E-value=0.11  Score=50.44  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=48.4

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee----C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH----N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~----~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      -.+.|.|.+.||||+|++|+.+|++.++||.+....+.    . +.+.-.|.|.-       .+.++++.+.+.|+.
T Consensus       325 y~v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V-------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        325 RLARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET-------RDAAHLQEVIAALRA  394 (403)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe-------CCHHHHHHHHHHHHH
Confidence            34799999999999999999999999999999998764    3 44444444433       124566677666654

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=95.38  E-value=0.066  Score=34.67  Aligned_cols=34  Identities=26%  Similarity=0.479  Sum_probs=30.8

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEee
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD   71 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~   71 (315)
                      |.+.++|++|+++++++.|...|++|........
T Consensus         1 i~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~   34 (60)
T cd02116           1 LTVSGPDRPGLLAKVLSVLAEAGINITSIEQRTS   34 (60)
T ss_pred             CEEEecCCCchHHHHHHHHHHCCCcEEEEEeEEc
Confidence            4688999999999999999999999999888764

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=95.22  E-value=0.09  Score=37.14  Aligned_cols=54  Identities=20%  Similarity=0.343  Sum_probs=37.5

Q ss_pred             CcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          137 DRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       137 DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      |+||.|.+|+++|...|.||.+..+....  +...-++.+.+  +.      ...+.|.+.|.+
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~--~~------~~i~~l~~Ql~K   56 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG--DD------REIEQLVKQLEK   56 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES---C------CHHHHHHHHHHC
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee--Cc------hhHHHHHHHHhc
Confidence            78999999999999999999999998743  55555555554  11      244556666643

>PRK06635 aspartate kinase; Reviewed

Probab=95.14  E-value=0.67  Score=44.92  Aligned_cols=107  Identities=20%  Similarity=0.284  Sum_probs=66.2

Q ss_pred             EEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245           36 TVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (315)
Q Consensus        36 ~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~  113 (315)
                      ..|+|. ..++||.++++..+|++.|+||.....+... |..--.|.+...+.     +...+.|++ +......     
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~-----~~a~~~L~~-~~~~~~~-----  331 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDL-----EKALELLEE-VKDEIGA-----  331 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHH-----HHHHHHHHH-HHHHcCc-----
Confidence            334444 4688999999999999999999955443222 23434566643111     112233333 1111110     


Q ss_pred             cCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245          114 TWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       114 ~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                          ..+  ....+...+.|.+   +++||.++++.++|+++|+||...
T Consensus       332 ----~~i--~~~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i  374 (404)
T PRK06635        332 ----ESV--TYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMI  374 (404)
T ss_pred             ----ceE--EEcCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEE
Confidence                011  1223566777766   699999999999999999999764

>PRK07334 threonine dehydratase; Provisional

Probab=95.12  E-value=0.12  Score=50.21  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=47.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      ..|.|.+.||+|+|++|+.+|++.+.||.+.+..+.     ++.+.-.|.+.-      .+.+.++++.+.|..
T Consensus       327 v~l~I~~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V------~d~~~L~~vi~~Lr~  394 (403)
T PRK07334        327 ARLRVDIRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIET------RDAAHLQEVIAALRA  394 (403)
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEe------CCHHHHHHHHHHHHH
Confidence            689999999999999999999999999999888764     466554555542      222445666666654

>cd04898 ACT_ACR-like_4 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein)

Probab=95.03  E-value=0.056  Score=39.29  Aligned_cols=68  Identities=24%  Similarity=0.311  Sum_probs=47.3

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEE--EEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACV--LYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~--F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      |++.++-||-.|+++|-+|+.+|+-|.+|+|.-+  +++-..+  |.+.+ . +..+.......++...+...|
T Consensus         3 VElsGkGRPrVfyDvTlALK~L~i~IFsaeIgR~~~~~r~wEvyR~LL~e-~-~~~~~~~~~r~~i~drv~~~l   74 (77)
T cd04898           3 VELSGKGRPRVFYDITLALKKLGICIFSAEIGRHSTGDRQWEVYRVLLLE-H-DRLKLGGRQRSKVVDRVTKTL   74 (77)
T ss_pred             ccccCCCCcceeeehHHHHHHhccEEEehhhhhhhcCCeeEEEEEEeecC-C-CccccchHHHHHHHHHHHHHH
Confidence            6788999999999999999999999999999754  4554444  33333 2 333443334455666555544

This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08210 aspartate kinase I; Reviewed

Probab=95.02  E-value=1.5  Score=42.60  Aligned_cols=99  Identities=19%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             CeEEEEEEecCC-ccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245           34 ECTVVKVDSVNK-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (315)
Q Consensus        34 ~~~~v~V~~~Dr-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (315)
                      +...|+|.+.+. ||.+++|...|++.|+||.-...+..  .  -.|.+...         ..++.++.|....      
T Consensus       270 ~i~~isv~~~~~~~g~la~If~~L~~~~I~i~~i~~~~~--~--is~~v~~~---------~~~~a~~~l~~~~------  330 (403)
T PRK08210        270 NVTQIKVKAKENAYDLQQEVFKALAEAGISVDFINIFPT--E--VVFTVSDE---------DSEKAKEILENLG------  330 (403)
T ss_pred             CcEEEEEecCCCcchHHHHHHHHHHHcCCeEEEEEecCc--e--EEEEEcHH---------HHHHHHHHHHHhC------
Confidence            445667766554 99999999999999999996644322  1  24555421         1223333333311      


Q ss_pred             ccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245          113 KTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       113 ~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~  158 (315)
                         ....+    ..+...|.|.+.   ++||+++++..+|++.|+||..
T Consensus       331 ---~~v~~----~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        331 ---LKPSV----RENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             ---CcEEE----eCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence               01111    235566667664   8999999999999999999974

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=94.90  E-value=0.025  Score=42.40  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             EEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEee---------CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          130 AIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTH---------NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       130 ~i~i~~~D-rpgLl~~i~~~l~~~~l~I~~A~i~t~---------~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .|+|.|+| +.|++++++++|+++|+||.+-+-.+.         .......|.|+. +   + .   ..+.+++.|.+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~~l~~~~~~~~~~~~~~~~~e~~v~~-~---~-~---~~~~lr~~L~~   71 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRG-Q---P-A---DLEALRAALLE   71 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHHHhhccccccccCCCCcEEEEEEEeC-C---C-C---CHHHHHHHHHH
Confidence            37899999 999999999999999999965443211         124566788876 2   2 1   23667777753

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>PRK06635 aspartate kinase; Reviewed

Probab=94.81  E-value=0.36  Score=46.79  Aligned_cols=107  Identities=16%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             EEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245          129 TAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (315)
Q Consensus       129 t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  206 (315)
                      ..|++. ..++||+++++.++|+++|+||......... +...-.|.|..          +..++..+.|.+ +..... 
T Consensus       263 ~~Isv~g~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~----------~~~~~a~~~L~~-~~~~~~-  330 (404)
T PRK06635        263 AKVTVVGVPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPR----------DDLEKALELLEE-VKDEIG-  330 (404)
T ss_pred             EEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcH----------HHHHHHHHHHHH-HHHHcC-
Confidence            334433 4678999999999999999999954322111 23444555543          122223333322 110000 


Q ss_pred             ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe---CCCCchHH
Q 021245          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RDRAKLMF  283 (315)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a---~DRpGLL~  283 (315)
                                                                      ...|++.    .+.+++.|.+   .|+||.++
T Consensus       331 ------------------------------------------------~~~i~~~----~~ia~isvvG~~~~~~~g~~a  358 (404)
T PRK06635        331 ------------------------------------------------AESVTYD----DDIAKVSVVGVGMRSHPGVAA  358 (404)
T ss_pred             ------------------------------------------------cceEEEc----CCeEEEEEECCCCCCCchHHH
Confidence                                                            0223333    3567888876   59999999


Q ss_pred             HHHhhhcCCceEEEEE
Q 021245          284 DIVCTLTDMQYVVFHA  299 (315)
Q Consensus       284 ~I~~~l~~~~i~I~~A  299 (315)
                      +|.++|++.|++|...
T Consensus       359 ~i~~~La~~~Ini~~i  374 (404)
T PRK06635        359 KMFEALAEEGINIQMI  374 (404)
T ss_pred             HHHHHHHHCCCCEEEE
Confidence            9999999999999885

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=94.62  E-value=0.48  Score=34.21  Aligned_cols=46  Identities=17%  Similarity=0.273  Sum_probs=34.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~  176 (315)
                      +.+..+|+||-|+++..+|+++|+||.+-...-..+ ...=.|+|.-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~   48 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDF   48 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            345568999999999999999999999875554333 4445666665

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=94.43  E-value=0.93  Score=43.86  Aligned_cols=106  Identities=18%  Similarity=0.198  Sum_probs=67.1

Q ss_pred             ceEEEEEE---eCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245          127 DHTAIELI---GRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (315)
Q Consensus       127 ~~t~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  203 (315)
                      +...|.|.   ..++||+++++...|+++|++|......  .....-.|.|..          +..++..+.|.+.+...
T Consensus       259 ~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~--~s~~~Is~~V~~----------~d~~~a~~~L~~~~~~~  326 (401)
T TIGR00656       259 NVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQT--PSETSISLTVDE----------TDADEAVRALKDQSGAA  326 (401)
T ss_pred             CEEEEEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcC--CCCceEEEEEeH----------HHHHHHHHHHHHHHHhc
Confidence            45567777   5688999999999999999999743211  111222344532          12223333333322100


Q ss_pred             CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK  280 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG  280 (315)
                       .                                                 ...|.++    .++++|.|.+.   ++||
T Consensus       327 -~-------------------------------------------------~~~i~~~----~~~a~IsvVG~~~~~~~g  352 (401)
T TIGR00656       327 -G-------------------------------------------------LDRVEVE----EGLAKVSIVGAGMVGAPG  352 (401)
T ss_pred             -C-------------------------------------------------CceEEEe----CCeEEEEEECCCcccCcc
Confidence             0                                                 0223333    35778888875   7999


Q ss_pred             hHHHHHhhhcCCceEEEE
Q 021245          281 LMFDIVCTLTDMQYVVFH  298 (315)
Q Consensus       281 LL~~I~~~l~~~~i~I~~  298 (315)
                      +++++.++|.+.|++|..
T Consensus       353 ~~a~i~~~L~~~gIni~~  370 (401)
T TIGR00656       353 VASEIFSALEEKNINILM  370 (401)
T ss_pred             HHHHHHHHHHHCCCcEEE
Confidence            999999999999999985

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.30  E-value=0.37  Score=34.27  Aligned_cols=60  Identities=22%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             EEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          132 ELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       132 ~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      .|.-+||||-|.+++++++. |.||....=...+.....++..-. .     .+++..+.+.+.|.+
T Consensus         2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie-~-----~~~~~~~~i~~~L~~   61 (68)
T cd04885           2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQ-V-----PDREDLAELKERLEA   61 (68)
T ss_pred             EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEE-e-----CCHHHHHHHHHHHHH
Confidence            57789999999999999999 999987654433211222222222 1     123466667766643

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.24  E-value=0.36  Score=50.37  Aligned_cols=75  Identities=15%  Similarity=0.119  Sum_probs=53.2

Q ss_pred             eEEEecCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245           24 RASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (315)
Q Consensus        24 ~v~i~~~~~-~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (315)
                      .+.+..... .-...|.|.+.||+|+|++|+.++++.++||.+.++.+.  ++.+...|.+.-      .+-..+.+|..
T Consensus       654 ~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV------~~~~~L~~l~~  727 (743)
T PRK10872        654 DAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI------YNLQVLGRVLG  727 (743)
T ss_pred             EeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE------CCHHHHHHHHH
Confidence            455654322 234588999999999999999999999999999998763  577665666642      22245566666


Q ss_pred             HHCC
Q 021245          101 ALGP  104 (315)
Q Consensus       101 ~L~~  104 (315)
                      .|..
T Consensus       728 ~L~~  731 (743)
T PRK10872        728 KLNQ  731 (743)
T ss_pred             HHhc
Confidence            6654

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=94.19  E-value=0.67  Score=35.20  Aligned_cols=70  Identities=11%  Similarity=0.182  Sum_probs=46.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      ..+.+.+..+|+||-|+++...|+.+|+|+..-...-.. ....=.|+|.-  +|.  .+ ..++.+-+.|...|.
T Consensus        13 ~ktslif~l~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDi--eg~--~~-~~~~~~l~~L~~~~~   83 (90)
T cd04931          13 GVISLIFSLKEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINL--DKK--SA-PALDPIIKSLRNDIG   83 (90)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE--EcC--CC-HHHHHHHHHHHHHhC
Confidence            446777777999999999999999999999876655443 33445777865  343  22 244444444544443

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=94.12  E-value=0.21  Score=35.56  Aligned_cols=62  Identities=19%  Similarity=0.209  Sum_probs=39.5

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      +.|.-+|+||-|.+++.+++. |.||...+-...+-.....+......+     ++..+.|.+.|...
T Consensus         1 ~~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~-----~~~~~~i~~~L~~~   62 (68)
T cd04885           1 FAVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPD-----REDLAELKERLEAL   62 (68)
T ss_pred             CEEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCC-----HHHHHHHHHHHHHc
Confidence            357889999999999999999 999997655432211122233332222     24566777777553

This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=94.10  E-value=0.31  Score=50.78  Aligned_cols=63  Identities=21%  Similarity=0.288  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      ...|.|.+.||+|||++|+.++++.++||.+..+.+..  +.+...|.|.-       .+.+.+.++-..|.
T Consensus       666 ~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV-------~~~~~L~~l~~~L~  730 (743)
T PRK10872        666 SLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEI-------YNLQVLGRVLGKLN  730 (743)
T ss_pred             EEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            45888999999999999999999999999999987753  55555555543       22346666666663

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=94.07  E-value=0.29  Score=43.18  Aligned_cols=53  Identities=21%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             CCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       124 ~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      ..+....+.+.-.|+||....++..|.++|+||...++...  ++.++.+..+..
T Consensus       144 ~~~~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~  198 (208)
T TIGR00719       144 FRGEHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEIDK  198 (208)
T ss_pred             ecCCccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCC
Confidence            34455677788899999999999999999999999999875  466777776654

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.89  E-value=0.48  Score=49.26  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             EEEecCCCC-CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245           25 ASVDNSSCP-ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (315)
Q Consensus        25 v~i~~~~~~-~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (315)
                      +.+...... -...|.|.+.||+|+|++|+.+++..++||.+.+..+. ++.+...|.+.-      .+-+.+.+|-..|
T Consensus       615 v~W~~~~~~~~~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~i~~~L  688 (702)
T PRK11092        615 VEWDKETEQEFIAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA------RDRVHLANIMRKI  688 (702)
T ss_pred             eEECCCCCceeEEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE------CCHHHHHHHHHHH
Confidence            556543222 34478899999999999999999999999999998774 455554555542      2224566666666


Q ss_pred             CCC
Q 021245          103 GPK  105 (315)
Q Consensus       103 ~~~  105 (315)
                      ...
T Consensus       689 r~i  691 (702)
T PRK11092        689 RVM  691 (702)
T ss_pred             hCC
Confidence            543

>PRK06291 aspartate kinase; Provisional

Probab=93.75  E-value=2.6  Score=41.73  Aligned_cols=105  Identities=13%  Similarity=0.206  Sum_probs=67.9

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +...|+|.+.   +.+|+++++..+|++.|++|.-....+....  -.|.|...+-     +...+.|.+.+.....   
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~s--Isf~V~~~d~-----~~av~~L~~~~~~~~~---  389 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESN--ISLVVDEADL-----EKALKALRREFGEGLV---  389 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCce--EEEEEeHHHH-----HHHHHHHHHHHHHhcC---
Confidence            4556777764   7899999999999999999985443332211  2455543111     1234445544432110   


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVA  157 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~  157 (315)
                           ..+.    ...+...|.|.|.   +++|+.+++..+|++.|+||.
T Consensus       390 -----~~i~----~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~  430 (465)
T PRK06291        390 -----RDVT----FDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIK  430 (465)
T ss_pred             -----cceE----EeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEE
Confidence                 0111    1235567778775   799999999999999999997

>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B

Probab=93.65  E-value=0.26  Score=34.79  Aligned_cols=39  Identities=23%  Similarity=0.284  Sum_probs=30.3

Q ss_pred             CCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           44 NKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        44 DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      |+||.|.+|++++...|+||.+..+..  .++..--++.+.
T Consensus         1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~   41 (63)
T PF13710_consen    1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS   41 (63)
T ss_dssp             SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred             CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence            789999999999999999999999876  556554444443

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=93.47  E-value=0.4  Score=49.84  Aligned_cols=63  Identities=13%  Similarity=0.230  Sum_probs=47.6

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .+.|.|.+.||+|+|++|+.+++..++||.++.+.+.+ +.+...|.+.-       .+.+.+..|-..|.
T Consensus       626 ~v~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~i~~~Lr  689 (702)
T PRK11092        626 IAEIKVEMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTA-------RDRVHLANIMRKIR  689 (702)
T ss_pred             EEEEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            45888999999999999999999999999999987765 44444555543       12356666666663

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=93.38  E-value=0.37  Score=40.65  Aligned_cols=47  Identities=15%  Similarity=0.408  Sum_probs=38.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC--eEEEEEEEEe
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR--RIACVLYVND  176 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~--~~~d~F~V~~  176 (315)
                      -+.+.+.++||.|.+++++++++|.||..|+-+..++  ...-.|.+.+
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEg   52 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEG   52 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeC
Confidence            4678899999999999999999999999999998653  4555555544

>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH)

Probab=93.25  E-value=1.1  Score=34.08  Aligned_cols=40  Identities=23%  Similarity=0.276  Sum_probs=32.5

Q ss_pred             cCCCCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           29 NSSCPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        29 ~~~~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      .....+.+.|.+..+|+||-|+++...|+..|+|+.  +|.+
T Consensus         8 ~~~~~~ktslif~l~~~pGsL~~vL~~Fa~~~INLt--~IeS   47 (90)
T cd04931           8 NSNKNGVISLIFSLKEEVGALAKVLRLFEEKDINLT--HIES   47 (90)
T ss_pred             ccCCCCcEEEEEEcCCCCcHHHHHHHHHHHCCCCEE--EEEe
Confidence            333445577777789999999999999999999999  5544

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=93.15  E-value=0.19  Score=49.01  Aligned_cols=50  Identities=26%  Similarity=0.332  Sum_probs=44.5

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      ....|.+.-+|+||.++.|+.+|+++|+||...+..+.++.+..++.+..
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~D~  386 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDVDA  386 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEeCC
Confidence            56788889999999999999999999999999999888888888886654

>PRK09034 aspartate kinase; Reviewed

Probab=93.14  E-value=3.2  Score=41.06  Aligned_cols=107  Identities=19%  Similarity=0.181  Sum_probs=65.7

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|++.+   .+.+|+++++...|++.|++|.-.   +.+... -.|.+...+-.   . ..+..+...|...+..  
T Consensus       307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i---~ss~~s-is~~v~~~~~~---~-a~~~~l~~el~~~~~~--  376 (454)
T PRK09034        307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHM---PSGIDD-LSIIIRERQLT---P-KKEDEILAEIKQELNP--  376 (454)
T ss_pred             CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEE---cCCCcE-EEEEEeHHHhh---H-HHHHHHHHHHHHhhCC--
Confidence            345566664   578999999999999999999854   222222 35777542111   0 0112333233221110  


Q ss_pred             CcccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                             ..+.  ...+...|.+.+   .++||+++++..+|+++|+||.-.
T Consensus       377 -------~~I~--~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mI  419 (454)
T PRK09034        377 -------DELE--IEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMI  419 (454)
T ss_pred             -------ceEE--EeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEE
Confidence                   0111  223567788865   478999999999999999999754

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.99  E-value=0.47  Score=34.26  Aligned_cols=29  Identities=28%  Similarity=0.455  Sum_probs=25.5

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEE
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKA   66 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A   66 (315)
                      +.+..+|+||-|+++...|+.+|+||..-
T Consensus         2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I   30 (75)
T cd04880           2 LVFSLKNKPGALAKALKVFAERGINLTKI   30 (75)
T ss_pred             EEEEeCCcCCHHHHHHHHHHHCCCCEEEE
Confidence            34556899999999999999999999955

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.98  E-value=0.81  Score=47.55  Aligned_cols=75  Identities=13%  Similarity=0.063  Sum_probs=52.0

Q ss_pred             eEEEecCCC-CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245           24 RASVDNSSC-PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKA  101 (315)
Q Consensus        24 ~v~i~~~~~-~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~  101 (315)
                      .+.+..... .-.+.|.|.+.||+|+|++|+.+++..+.||.+.++.+. ++.+.-.|.+.-      .+-..+..|...
T Consensus       598 ~v~W~~~~~~~f~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV------~~~~~L~~ii~~  671 (683)
T TIGR00691       598 EVEWNASKPRRFIVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI------KNYKHLLKIMLK  671 (683)
T ss_pred             EEEecCCCCceeEEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE------CCHHHHHHHHHH
Confidence            355654322 234588899999999999999999999999999998775 466554555542      222445666666


Q ss_pred             HCC
Q 021245          102 LGP  104 (315)
Q Consensus       102 L~~  104 (315)
                      |..
T Consensus       672 L~~  674 (683)
T TIGR00691       672 IKT  674 (683)
T ss_pred             HhC
Confidence            654

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=92.80  E-value=0.76  Score=33.30  Aligned_cols=46  Identities=11%  Similarity=0.174  Sum_probs=34.7

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      +.+..+|+||-|+++...|+.+|+|+..-...-.. ....=.|+|.-
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~   49 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDC   49 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEE
Confidence            44556899999999999999999999876655443 33445677765

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=92.79  E-value=0.068  Score=37.93  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=30.5

Q ss_pred             CCeeEEEEEeC----CCCchHHHHHhhhcCCceEEEEEE
Q 021245          266 KGYSVVNVKCR----DRAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       266 ~~~tvieV~a~----DRpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      .++..|.|.+.    |.||+++.+..+|++.||+|+...
T Consensus         4 ~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is   42 (65)
T PF13840_consen    4 EDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS   42 (65)
T ss_dssp             SEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred             CCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE
Confidence            46788888887    899999999999999999998876

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=92.62  E-value=0.57  Score=48.35  Aligned_cols=64  Identities=27%  Similarity=0.339  Sum_probs=46.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEE-EEEEEEeCCCCCcCCChHHHHHHHHHH
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA-CVLYVNDDTTCRAVGDQTRLSLMEEQL  196 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~-d~F~V~~~~~g~~~~~~~~~~~l~~~L  196 (315)
                      .-...|.|.+.||+|+|++|+.+|+..++||.+....+..+... -.|.+.-       .+...+..|-..|
T Consensus       625 ~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v-------~n~~~L~~i~~~l  689 (701)
T COG0317         625 VYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV-------KNLNHLGRVLARL  689 (701)
T ss_pred             ceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE-------CcHHHHHHHHHHH
Confidence            34568999999999999999999999999999999887644433 3343333       2234566665555

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=92.58  E-value=0.79  Score=47.66  Aligned_cols=63  Identities=19%  Similarity=0.223  Sum_probs=47.1

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      .+.|.|.+.||+|+|++|+.+|+..++||.+.++.+.. +.+.-.|.|.-       .+...+..|-..|.
T Consensus       610 ~v~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV-------~~~~~L~~ii~~L~  673 (683)
T TIGR00691       610 IVDINIEAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEI-------KNYKHLLKIMLKIK  673 (683)
T ss_pred             EEEEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEE-------CCHHHHHHHHHHHh
Confidence            45888999999999999999999999999999998764 44444444443       22356666665553

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=92.52  E-value=1  Score=32.89  Aligned_cols=46  Identities=17%  Similarity=0.227  Sum_probs=35.5

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      +.+..+|+||-|+++...|+.+|+|+..-...... ....=.|+|.-
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~   49 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDC   49 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEE
Confidence            44556899999999999999999999876665543 33455777765

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06291 aspartate kinase; Provisional

Probab=92.49  E-value=3.1  Score=41.25  Aligned_cols=108  Identities=19%  Similarity=0.158  Sum_probs=68.7

Q ss_pred             ceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245          127 DHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (315)
Q Consensus       127 ~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  203 (315)
                      +...|.|.+.   +.||+++++.++|+++|++|.-..-.+  ...--.|.|..          +...+..+.|.+.+...
T Consensus       320 ~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~s--se~sIsf~V~~----------~d~~~av~~L~~~~~~~  387 (465)
T PRK06291        320 NVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS--SESNISLVVDE----------ADLEKALKALRREFGEG  387 (465)
T ss_pred             CEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecC--CCceEEEEEeH----------HHHHHHHHHHHHHHHHh
Confidence            4567777754   789999999999999999987532222  22223444433          11222233343333210


Q ss_pred             CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK  280 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG  280 (315)
                      .                                                  ...|++.    .+.++|.|.+.   ++||
T Consensus       388 ~--------------------------------------------------~~~i~~~----~~~a~IsvvG~gm~~~~g  413 (465)
T PRK06291        388 L--------------------------------------------------VRDVTFD----KDVCVVAVVGAGMAGTPG  413 (465)
T ss_pred             c--------------------------------------------------CcceEEe----CCEEEEEEEcCCccCCcC
Confidence            0                                                  0124443    35678888876   7999


Q ss_pred             hHHHHHhhhcCCceEEEEEE
Q 021245          281 LMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       281 LL~~I~~~l~~~~i~I~~Ak  300 (315)
                      ++.++..+|.+.|++|..-.
T Consensus       414 v~~rif~aL~~~~I~v~~is  433 (465)
T PRK06291        414 VAGRIFSALGESGINIKMIS  433 (465)
T ss_pred             hHHHHHHHHHHCCCCEEEEE
Confidence            99999999999999997544

>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=92.08  E-value=0.11  Score=38.98  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=28.0

Q ss_pred             EEEEEecC-CccHHHHHHHHHHhCCceEEEEE
Q 021245           37 VVKVDSVN-KPGILLEVVQVLSDLDLIITKAY   67 (315)
Q Consensus        37 ~v~V~~~D-rpGLl~~i~~~L~~~glnI~~A~   67 (315)
                      .|||.++| ..|+++.++++|+++|+||.+-+
T Consensus         1 ivtvlg~~~~a~~ia~Vs~~lA~~~~NI~~I~   32 (84)
T cd04871           1 IVTLLGRPLTAEQLAAVTRVVADQGLNIDRIR   32 (84)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHHcCCCHHHHH
Confidence            37999999 99999999999999999998443

The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains

>COG1707 ACT domain-containing protein [General function prediction only]

Probab=92.00  E-value=0.57  Score=39.56  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGG   73 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g   73 (315)
                      -+.+.+.|+||.|.++++.+++.|.||..+..|. .+|
T Consensus         4 ~lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g   41 (218)
T COG1707           4 GLSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDG   41 (218)
T ss_pred             eeEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccC
Confidence            4678899999999999999999999999999997 455

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=91.89  E-value=0.74  Score=32.55  Aligned_cols=45  Identities=27%  Similarity=0.483  Sum_probs=34.4

Q ss_pred             ceEEEEEEeC----CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          127 DHTAIELIGR----DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~----DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      +...|+|.++    |.||+++++++.|+++|+||....  |   ..-+.+.|..
T Consensus         5 ~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is--S---~~~~~ilV~~   53 (65)
T PF13840_consen    5 DWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS--S---EISISILVKE   53 (65)
T ss_dssp             EEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE--E---SSEEEEEEEG
T ss_pred             CEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE--E---eeeEEEEEeH
Confidence            4567788877    799999999999999999997655  2   3456666655

>PRK08210 aspartate kinase I; Reviewed

Probab=91.84  E-value=3.4  Score=40.03  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             CCeeEEEEEeC---CCCchHHHHHhhhcCCceEEEE
Q 021245          266 KGYSVVNVKCR---DRAKLMFDIVCTLTDMQYVVFH  298 (315)
Q Consensus       266 ~~~tvieV~a~---DRpGLL~~I~~~l~~~~i~I~~  298 (315)
                      .+++++.|.+.   ++||++.++..+|.+.|++|.+
T Consensus       337 ~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~  372 (403)
T PRK08210        337 ENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQ  372 (403)
T ss_pred             CCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEE
Confidence            35678888875   8999999999999999999985

>PRK06382 threonine dehydratase; Provisional

Probab=91.75  E-value=1.4  Score=42.86  Aligned_cols=67  Identities=28%  Similarity=0.247  Sum_probs=48.0

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE----ee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW----TH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~----t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ....+.+.|..+|+||-|++++.+|.++|+||.+....    .. .+...-+|.|.. .      +++..+.|.+.|.+
T Consensus       327 ~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet-~------~~~~~~~v~~~L~~  398 (406)
T PRK06382        327 LGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNV-R------GQDHLDRILNALRE  398 (406)
T ss_pred             cCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEe-C------CHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999877654    12 245555666655 1      12344466666643

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=91.57  E-value=1.2  Score=46.11  Aligned_cols=75  Identities=15%  Similarity=0.158  Sum_probs=51.6

Q ss_pred             eEEEecCC-CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeC-CEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245           24 RASVDNSS-CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDG-GWFMDVFHVIDQQGKKITDGKTIDYIEKA  101 (315)
Q Consensus        24 ~v~i~~~~-~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~-g~~~d~f~v~~~~g~~~~~~~~~~~l~~~  101 (315)
                      .|.+.... ..-...|.|.+.||+|+|++|+.+|+..+.||......+.+ +.+.-.|.+.      +.+-..+.+|-..
T Consensus       615 ~v~W~~~~~~~f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~------v~n~~~L~~i~~~  688 (701)
T COG0317         615 DVSWGPEYGQVYPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIE------VKNLNHLGRVLAR  688 (701)
T ss_pred             EEEecCCCCcceEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEE------ECcHHHHHHHHHH
Confidence            55666653 34556899999999999999999999999999988887644 4443333333      1222345666666


Q ss_pred             HCC
Q 021245          102 LGP  104 (315)
Q Consensus       102 L~~  104 (315)
                      |..
T Consensus       689 l~~  691 (701)
T COG0317         689 LKQ  691 (701)
T ss_pred             Hhc
Confidence            554

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=90.67  E-value=2.7  Score=31.27  Aligned_cols=61  Identities=15%  Similarity=0.204  Sum_probs=36.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ++.+.-+|+||=|++++.+|+  +.||....-... .+.+.-.+.+.. +++     ++..+.+.+.|.+
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~-~~~-----~~~~~~i~~~L~~   64 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSV-ANG-----AEELAELLEDLKS   64 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEe-CCc-----HHHHHHHHHHHHH
Confidence            467889999999999999999  556654333222 233333333333 111     3456677777644

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09084 aspartate kinase III; Validated

Probab=90.61  E-value=17  Score=35.95  Aligned_cols=104  Identities=15%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +...|+|.+.   +.+|.++++...|++.|++|.-..  +..  .--+|.+...+-..-......+++.+.|...     
T Consensus       305 ~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--sse--~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~-----  375 (448)
T PRK09084        305 NQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TSE--VSVSLTLDTTGSTSTGDTLLTQALLTELSQL-----  375 (448)
T ss_pred             CEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--ccC--cEEEEEEechhhhhhhhHHHHHHHHHHHhcC-----
Confidence            4556777654   689999999999999999998443  322  1235666542211100011223444344321     


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCce
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFN  155 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~  155 (315)
                           .+..+    ..+...|.+.|.   ++||+++++..+|++.++.
T Consensus       376 -----~~i~~----~~~va~IsvvG~gm~~~~gv~arif~aL~~~nI~  414 (448)
T PRK09084        376 -----CRVEV----EEGLALVALIGNNLSKACGVAKRVFGVLEPFNIR  414 (448)
T ss_pred             -----CeEEE----ECCeEEEEEECCCcccCcChHHHHHHHHHhCCeE
Confidence                 01122    236677888876   7999999999999875443

>PRK06545 prephenate dehydrogenase; Validated

Probab=90.24  E-value=1.2  Score=42.43  Aligned_cols=52  Identities=15%  Similarity=0.277  Sum_probs=41.9

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      -+.++.|.|.-+|+||-+++|+..|...|+||.+.+|.-..+...-++.+.-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~~~~  338 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQISF  338 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEEEEe
Confidence            3577899999999999999999999999999999999654444444444443

>PRK11899 prephenate dehydratase; Provisional

Probab=90.15  E-value=1.7  Score=40.14  Aligned_cols=49  Identities=18%  Similarity=0.139  Sum_probs=38.4

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      .|.+.+..+|+||.|+++.++|+.+|+|+..-...-.+ +...=.|+|.-
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~  243 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADI  243 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEE
Confidence            47777777999999999999999999999876665444 33444788865

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=90.01  E-value=19  Score=35.61  Aligned_cols=120  Identities=14%  Similarity=0.185  Sum_probs=73.8

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (315)
Q Consensus        33 ~~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (315)
                      .+...|+|.+.   ..+|.++++...|++.|+||.-.........  -.|.+...+.     +...+.+++...+...  
T Consensus       305 ~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~--i~~~v~~~~~-----~~a~~~l~~~~~~~~~--  375 (447)
T COG0527         305 DNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVS--ISFTVPESDA-----PRALRALLEEKLELLA--  375 (447)
T ss_pred             CCeEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCe--EEEEEchhhH-----HHHHHHHHHHHhhhcc--
Confidence            46667777755   3459999999999999999983322222222  3566653211     2334445444433221  


Q ss_pred             CCcccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          110 AGAKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                             ++.    -..+...|.+.+   +..||..+++..+|++.++||....    ....--.|.|.+
T Consensus       376 -------~v~----~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is----sSe~~Is~vV~~  430 (447)
T COG0527         376 -------EVE----VEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS----SSEISISFVVDE  430 (447)
T ss_pred             -------eEE----eeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE----cCCceEEEEEcc
Confidence                   111    122445566664   4779999999999999999998655    223445566654

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=89.82  E-value=0.46  Score=42.68  Aligned_cols=50  Identities=26%  Similarity=0.394  Sum_probs=38.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEE--EEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA--CVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~--d~F~V~~  176 (315)
                      ..-+|.+...|.||++++|+++|+..|.||.+.-+.-.....+  .+..+.+
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~G  127 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQG  127 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEec
Confidence            4567889999999999999999999999999877654333322  2555555

>TIGR00657 asp_kinases aspartate kinase

Probab=89.76  E-value=17  Score=35.68  Aligned_cols=108  Identities=21%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             CeEEEEEEecC-C-ccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245           34 ECTVVKVDSVN-K-PGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (315)
Q Consensus        34 ~~~~v~V~~~D-r-pGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (315)
                      +...|+|.+.+ . +|.++++...|.+.|++|......+.. .. -.|.+...+-     ++..+.|.... ....    
T Consensus       301 ~v~~Isv~g~~~~~~g~la~if~~L~~~~I~I~~i~q~~se-~s-Is~~I~~~~~-----~~a~~~L~~~~-~~~~----  368 (441)
T TIGR00657       301 NQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSE-TS-ISFTVDKEDA-----DQAKTLLKSEL-NLSA----  368 (441)
T ss_pred             CEEEEEEECCCCCCccHHHHHHHHHHHcCCeEEEEEecCCC-ce-EEEEEEHHHH-----HHHHHHHHHHH-HhcC----
Confidence            45556776543 3 799999999999999999855432322 11 2455543211     11222222111 1100    


Q ss_pred             cccCCceeeeecCCCceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245          112 AKTWPSKQVGVHSVGDHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE  160 (315)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~  160 (315)
                           ...+  ....+...|.+.+   .++||+++++.+.|+++|+||....
T Consensus       369 -----~~~I--~~~~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       369 -----LSSV--EVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             -----cceE--EEcCCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence                 0011  1234667788865   4789999999999999999997554

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK09181 aspartate kinase; Validated

Probab=89.68  E-value=23  Score=35.30  Aligned_cols=102  Identities=19%  Similarity=0.212  Sum_probs=65.5

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|+|.+.   +.+|+.+++...|++.|++|.  .+.+..  .--.|.+...  .     ...+++.+.|...+..  
T Consensus       328 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~--~i~ss~--~sis~~v~~~--~-----~~~~~~~~~L~~~~~~--  394 (475)
T PRK09181        328 KVFALEVFDQDMVGEDGYDLEILEILTRHKVSYI--SKATNA--NTITHYLWGS--L-----KTLKRVIAELEKRYPN--  394 (475)
T ss_pred             CEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEE--EEEecC--cEEEEEEcCC--h-----HHHHHHHHHHHHhcCC--
Confidence            4556677544   789999999999999999998  344322  1234666432  1     1123333333322210  


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeCC--cccHHHHHHHHHHhCCceEEE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGRD--RPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~D--rpgLl~~i~~~l~~~~l~I~~  158 (315)
                             ..+.  . .+...|.+.|..  +||+.+++.++|++.|+||..
T Consensus       395 -------~~i~--~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~  434 (475)
T PRK09181        395 -------AEVT--V-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLA  434 (475)
T ss_pred             -------ceEE--E-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEE
Confidence                   0122  1 456778887754  899999999999999999864

>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase)

Probab=89.60  E-value=2  Score=31.98  Aligned_cols=62  Identities=13%  Similarity=0.080  Sum_probs=38.0

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      .+.|.-+|+||-|++++.+|+  +.||.+..-.. ..+..--.+.+.-. +.    ++..+.+.+.|.+.
T Consensus         3 vl~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~-~~----~~~~~~i~~~L~~~   65 (85)
T cd04906           3 LLAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVA-NG----AEELAELLEDLKSA   65 (85)
T ss_pred             EEEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeC-Cc----HHHHHHHHHHHHHC
Confidence            477889999999999999999  67777444332 22332222323222 21    24566777777654

This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=89.57  E-value=0.62  Score=45.41  Aligned_cols=61  Identities=20%  Similarity=0.331  Sum_probs=47.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHH
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIE   99 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~   99 (315)
                      +...|.+.-+|+||.+++|+..|+++|+||...+.+..++.++-.+-+   ++. + +++..++|+
T Consensus       337 ~~~rlii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~~~~A~~iie~---D~~-~-~~~~~~~i~  397 (409)
T PRK11790        337 GGHRLLHIHENRPGVLAAINQIFAEQGINIAAQYLQTDGEIGYVVIDV---DAD-Y-AEEALDALK  397 (409)
T ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccCCCEEEEEEEe---CCC-C-cHHHHHHHH
Confidence            567888999999999999999999999999988888888877644443   332 2 234555655

>TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit

Probab=89.32  E-value=1.7  Score=38.22  Aligned_cols=48  Identities=15%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v   81 (315)
                      ....+.+.-.|+||.+.+++..|.+.|+||-..++.-  .+|.++-...+
T Consensus       147 ~g~~L~~~~~D~PG~Ig~vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~v  196 (208)
T TIGR00719       147 EHPAILLEHNDKFGTIAGVANLLAGFEINIEHLETAKKDIGNIALLTIEI  196 (208)
T ss_pred             CccEEEEEeCCCCChHHHHHHHHHhCCccEEEEEEEecCCCCEEEEEEEe
Confidence            4445667779999999999999999999999999975  56777644444

This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases.

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=89.16  E-value=2.5  Score=33.60  Aligned_cols=49  Identities=12%  Similarity=0.071  Sum_probs=37.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEe
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IACVLYVND  176 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~-~~d~F~V~~  176 (315)
                      .+.+.+..+|+||-|+++...|+.+|+|+..-......+. ..=.|+|.-
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdi   90 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRC   90 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEE
Confidence            4666677799999999999999999999987665554332 334666754

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PLN02551 aspartokinase

Probab=88.89  E-value=25  Score=35.49  Aligned_cols=123  Identities=17%  Similarity=0.198  Sum_probs=70.7

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|+|.+.   +.+|.++++...|+++|++|.-.  .+..  .--.|.+...+-..  .+.+.+.+++.+.+ +... 
T Consensus       365 ~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~~~~~~--~~~i~~~l~~l~~e-l~~~-  436 (521)
T PLN02551        365 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDPSKLWS--RELIQQELDHLVEE-LEKI-  436 (521)
T ss_pred             CeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEehhHhhh--hhhHHHHHHHHHHH-hhcC-
Confidence            4567777655   68999999999999999999844  3322  11246665422110  01111122222111 1100 


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                           ..  +.  ...+...|.|.|.  .+||+++++.++|+.+|+||.-..   .+ ....-.|.|.+
T Consensus       437 -----~~--V~--v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIs---qgaSeinIS~vV~~  493 (521)
T PLN02551        437 -----AV--VN--LLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMIS---QGASKVNISLIVND  493 (521)
T ss_pred             -----Ce--EE--EeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEE---ecCCCcEEEEEEeH
Confidence                 01  11  1235566776654  689999999999999999986432   23 23334455554

>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase

Probab=88.85  E-value=2.9  Score=47.07  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=73.4

Q ss_pred             CCCCCCCCChH----HHHHHhhcC---CCeEEEecCC--CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--
Q 021245            2 ANAYWPYFDPE----YESLSLRIN---PPRASVDNSS--CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--   70 (315)
Q Consensus         2 ~~~Y~~~~~~~----h~~~~~~~~---~~~v~i~~~~--~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--   70 (315)
                      +.+|=..|+++    +.+++.++.   +..+.+....  .++...+.++.+.++..|++++-+|..+|+.|.+.+-+.  
T Consensus       447 p~~Yre~f~p~~Av~Di~~le~l~~~~~~~~~l~~~~~~~~~~~~lkiy~~~~~~~Ls~vlPilenlGl~V~~e~~~~i~  526 (1528)
T PF05088_consen  447 PASYREDFSPEEAVRDIERLESLSGEGPLAVDLYRPAGAGPGRLRLKIYHPGEPLPLSDVLPILENLGLRVIDERPYEIR  526 (1528)
T ss_pred             CHHHHhhCCchhHHHHHHHHHhhcCCCCceEEEeccCCCCCCeEEEEEEcCCCCcCHHHHHHHHHhCCCEEEEEecceee
Confidence            34677788888    667776664   2355554332  346789999999999999999999999999999998875  


Q ss_pred             e-C--CEEEEEEEEEcCCCCCCCChhHHHHHHHHHC
Q 021245           71 D-G--GWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (315)
Q Consensus        71 ~-~--g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~  103 (315)
                      . +  ..++..|.+....+.........+.+++++.
T Consensus       527 ~~~~~~~~i~~F~l~~~~~~~~~~~~~~~~~~~a~~  562 (1528)
T PF05088_consen  527 RADGRRVWIHDFGLQYPDGDALDLDDIRERFEEAFE  562 (1528)
T ss_pred             cCCCceEEEEEEEEecCCCccccHHHHHHHHHHHHH
Confidence            2 2  3577788888776665444455555555554

>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=88.79  E-value=1.7  Score=31.49  Aligned_cols=31  Identities=16%  Similarity=0.286  Sum_probs=26.7

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      +.+..+|+||-|+++...|+..|+|+.  +|.+
T Consensus         3 l~f~l~~~pG~L~~vL~~f~~~~iNlt--~IeS   33 (74)
T cd04904           3 LIFSLKEEVGALARALKLFEEFGVNLT--HIES   33 (74)
T ss_pred             EEEEeCCCCcHHHHHHHHHHHCCCcEE--EEEC
Confidence            445568999999999999999999999  6654

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=88.67  E-value=17  Score=38.78  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=69.6

Q ss_pred             CCeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245           33 PECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (315)
Q Consensus        33 ~~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (315)
                      .+.+.|+|.+.   .+||+++++...|++.|++|.-....+ +..- -.|.|...+.     ++..+.|.+.+...+.. 
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss-Se~s-Isf~V~~~d~-----~~av~~L~~~f~~el~~-  384 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS-SEYS-ISFCVPQSDA-----AKAKRALEEEFALELKE-  384 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC-CCce-EEEEEeHHHH-----HHHHHHHHHHHHHHhcc-
Confidence            35667888765   689999999999999999997544333 2222 2466653211     12333444433221110 


Q ss_pred             CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEE
Q 021245          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                         .....+.    ...+...|.|.+.   ++||+++++.++|++.|+||.-.
T Consensus       385 ---~~~~~i~----~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~I  430 (819)
T PRK09436        385 ---GLLEPLE----VEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAI  430 (819)
T ss_pred             ---CCcceEE----EeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEE
Confidence               0000111    2236677888776   78999999999999999999743

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=88.63  E-value=2.5  Score=38.96  Aligned_cols=50  Identities=16%  Similarity=0.238  Sum_probs=39.4

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      ..|.+.+..+|+||-|+++.++|+.+|+|+..-...-.. +...=.|+|.-
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~  243 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDI  243 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEE
Confidence            478888888899999999999999999999866655444 34455677765

>PRK09034 aspartate kinase; Reviewed

Probab=88.59  E-value=9.7  Score=37.65  Aligned_cols=37  Identities=14%  Similarity=0.125  Sum_probs=30.1

Q ss_pred             CeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEEEEe
Q 021245          267 GYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAAISS  303 (315)
Q Consensus       267 ~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~AkI~T  303 (315)
                      +.++|.|.+   .++||++.++-.+|++.|++|....-++
T Consensus       384 ~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~  423 (454)
T PRK09034        384 DLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGS  423 (454)
T ss_pred             CEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecC
Confidence            467787864   3899999999999999999998775433

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=88.10  E-value=1.3  Score=44.59  Aligned_cols=52  Identities=23%  Similarity=0.413  Sum_probs=41.6

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      .+....+.+...|+||.++.++..|+++++||...++...  ++.++.++.+..
T Consensus       449 ~~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~  502 (526)
T PRK13581        449 KPEGHMLIIRNRDRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDD  502 (526)
T ss_pred             eCCceEEEEEeCCcCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCC
Confidence            3455666677799999999999999999999999998764  466777776644

>PRK06382 threonine dehydratase; Provisional

Probab=88.09  E-value=2.9  Score=40.60  Aligned_cols=67  Identities=19%  Similarity=0.244  Sum_probs=46.6

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE----e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS----S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~----t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      ...+.+.|.-+|+||-|++++..|.++|.||.+....    . ..+...-.|.|... +     ++..+.|.+.|.+.
T Consensus       328 ~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~-~-----~~~~~~v~~~L~~~  399 (406)
T PRK06382        328 GQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR-G-----QDHLDRILNALREM  399 (406)
T ss_pred             CCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC-C-----HHHHHHHHHHHHHC
Confidence            3567899999999999999999999999999977654    1 23444444555321 1     23445666676553

>TIGR00657 asp_kinases aspartate kinase

Probab=88.04  E-value=14  Score=36.34  Aligned_cols=35  Identities=14%  Similarity=0.112  Sum_probs=29.5

Q ss_pred             CCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEE
Q 021245          266 KGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       266 ~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      .+.+++.|.+   .++||++++|..+|++.|++|....
T Consensus       376 ~~~a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~  413 (441)
T TIGR00657       376 KGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMIS  413 (441)
T ss_pred             CCeEEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEE
Confidence            3567888864   4889999999999999999998764

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK11899 prephenate dehydratase; Provisional

Probab=88.01  E-value=3.3  Score=38.20  Aligned_cols=52  Identities=17%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCC
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGK   87 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~   87 (315)
                      .+.+.+..+|+||.|+++.+.|+..|+|+.+-.-.. .++..--.|++. -+|.
T Consensus       194 ktsl~~~~~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id-~eg~  246 (279)
T PRK11899        194 VTTFVFRVRNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYAD-IEGH  246 (279)
T ss_pred             eEEEEEEeCCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEE-EECC
Confidence            566777779999999999999999999999433332 333232356664 4554

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=87.91  E-value=9.4  Score=40.69  Aligned_cols=113  Identities=12%  Similarity=0.134  Sum_probs=71.0

Q ss_pred             CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      .+.+.|.|.+.   .+||+++++...|+++|++|.-..-.+  ....-.|.|..          +...+..+.|.+.+..
T Consensus       313 ~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqss--Se~sIsf~V~~----------~d~~~av~~L~~~f~~  380 (819)
T PRK09436        313 NNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSS--SEYSISFCVPQ----------SDAAKAKRALEEEFAL  380 (819)
T ss_pred             CCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCC--CCceEEEEEeH----------HHHHHHHHHHHHHHHH
Confidence            46677888754   689999999999999999996443222  22223455543          1122222333332211


Q ss_pred             CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA  279 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp  279 (315)
                      ...                       .                       .....|++.    .+.++|.|.+.   ++|
T Consensus       381 el~-----------------------~-----------------------~~~~~i~~~----~~valIsvvG~gm~~~~  410 (819)
T PRK09436        381 ELK-----------------------E-----------------------GLLEPLEVE----ENLAIISVVGDGMRTHP  410 (819)
T ss_pred             Hhc-----------------------c-----------------------CCcceEEEe----CCEEEEEEEccCcccCc
Confidence            100                       0                       000224444    35788888876   789


Q ss_pred             chHHHHHhhhcCCceEEEEEE
Q 021245          280 KLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       280 GLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      |++.++-.+|.+.|++|+.-.
T Consensus       411 gv~arif~aL~~~~InI~~Is  431 (819)
T PRK09436        411 GIAAKFFSALGRANINIVAIA  431 (819)
T ss_pred             CHHHHHHHHHHHCCCCEEEEE
Confidence            999999999999999998654

>PRK08198 threonine dehydratase; Provisional

Probab=87.69  E-value=5.1  Score=38.78  Aligned_cols=38  Identities=26%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW  162 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~  162 (315)
                      ......+.|.-+|+||-|+++...+++.|.||.+....
T Consensus       324 ~gr~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        324 AGRYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             cCCEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            34556899999999999999999999999999987754

>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes

Probab=87.45  E-value=1.8  Score=31.58  Aligned_cols=48  Identities=13%  Similarity=0.070  Sum_probs=32.9

Q ss_pred             EEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCC
Q 021245           38 VKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGK   87 (315)
Q Consensus        38 v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~   87 (315)
                      +.+..+|+||-|+++...|+..|+|+..-.-..  ...+-. .|+|. -+|.
T Consensus         3 l~~~l~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y-~F~id-~e~~   52 (74)
T cd04929           3 VIFSLKNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEF-EIFVD-CECD   52 (74)
T ss_pred             EEEEcCCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceE-EEEEE-EEcC
Confidence            445568999999999999999999999433332  233433 35554 3344

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=86.84  E-value=22  Score=38.19  Aligned_cols=103  Identities=16%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|+|.+   .+.+|.++++...|++.|++|.-  |.+..  .--+|.+.+.+.  ....+.++.+.+.|....    
T Consensus       321 ~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~--I~sse--~sis~~i~~~~~--~~~~~~~~~l~~~l~~~~----  390 (861)
T PRK08961        321 GIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDL--ISSSE--TNVTVSLDPSEN--LVNTDVLAALSADLSQIC----  390 (861)
T ss_pred             CEEEEEEecCCccccccHHHHHHHHHHHcCCeEEE--EEcCC--CEEEEEEccccc--cchHHHHHHHHHHHhhcC----
Confidence            455667753   46899999999999999999973  33322  112455543221  101123444444443211    


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNV  156 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I  156 (315)
                            ...+    ..+...|.|.+.   .+||+.+++..+|++.|+++
T Consensus       391 ------~i~~----~~~va~ISvVG~gm~~~~gv~arif~aL~~~~I~~  429 (861)
T PRK08961        391 ------RVKI----IVPCAAVSLVGRGMRSLLHKLGPAWATFGAERVHL  429 (861)
T ss_pred             ------cEEE----eCCeEEEEEeCCCcccCcChHHHHHHHHhhcCeEE
Confidence                  1111    135577888875   88999999999999987655

>PRK08818 prephenate dehydrogenase; Provisional

Probab=86.42  E-value=1.8  Score=41.59  Aligned_cols=49  Identities=14%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~-DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      ..+.+.+.-+ |+||.|++++.+|+.+|+||.+-++.-......- |+|.-
T Consensus       294 ~~~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies~~~r~~~y~-f~i~~  343 (370)
T PRK08818        294 EPLTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHSSRTPAGELH-FRIGF  343 (370)
T ss_pred             cceEEEEECCCCCCChHHHHHHHHHHcCcccceEEEecccCceEE-EEEEE
Confidence            4677777786 9999999999999999999999888322222222 77765

>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]

Probab=86.42  E-value=3.8  Score=37.76  Aligned_cols=51  Identities=27%  Similarity=0.335  Sum_probs=38.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe---eCCEEEEEEEEEcCCCC
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGK   87 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~~d~f~v~~~~g~   87 (315)
                      ..+.+.+..+|+||-|+++.+.|+..|+|..  +|.+   ..+..--.|+|. -+|.
T Consensus       193 ~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlT--kIESRP~k~~~~~Y~F~iD-~eg~  246 (279)
T COG0077         193 EKTSLIFSVPNKPGALYKALGVFAKRGINLT--KIESRPLKTGLGEYLFFID-IEGH  246 (279)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCccee--eEeecccCCCCeeEEEEEE-EecC
Confidence            4778888888999999999999999999999  5654   333333346664 4555

>PRK06545 prephenate dehydrogenase; Validated

Probab=86.39  E-value=1.6  Score=41.61  Aligned_cols=39  Identities=23%  Similarity=0.380  Sum_probs=36.0

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      -+.+..|.|.-+|+||-+++++..|...|+||.+-+|.-
T Consensus       287 ~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~  325 (359)
T PRK06545        287 IPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILE  325 (359)
T ss_pred             CCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeee
Confidence            357889999999999999999999999999999999964

>PRK12483 threonine dehydratase; Reviewed

Probab=86.32  E-value=27  Score=35.28  Aligned_cols=119  Identities=17%  Similarity=0.182  Sum_probs=67.8

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC-CC--
Q 021245           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG-HI--  108 (315)
Q Consensus        33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~-~~--  108 (315)
                      .....+.|.-+||||-|.+++..|...  ||.+..-... .+. ...+....-.+.    +...+.|.+.|.+.. ..  
T Consensus       343 ~r~~~~~v~~~d~pG~l~~~~~~l~~~--ni~~~~~~~~~~~~-~~v~v~ie~~~~----~~~~~~i~~~l~~~g~~~~d  415 (521)
T PRK12483        343 QREAIIAVTIPEQPGSFKAFCAALGKR--QITEFNYRYADARE-AHLFVGVQTHPR----HDPRAQLLASLRAQGFPVLD  415 (521)
T ss_pred             CCEEEEEEEeCCCCCHHHHHHHHhhhc--CeEEEEEEecCCCe-eEEEEEEEeCCh----hhhHHHHHHHHHHCCCCeEE
Confidence            355678899999999999999999988  8886555432 233 333444332221    122367777775432 11  


Q ss_pred             -CCC--cccCCceeeeec--CCCceEEEEEEeCCcccHHHHHHHHHHh-CCceEEE
Q 021245          109 -TAG--AKTWPSKQVGVH--SVGDHTAIELIGRDRPGLLSEISAVLAN-LRFNVAA  158 (315)
Q Consensus       109 -~~~--~~~~~~~~v~~~--~~~~~t~i~i~~~DrpgLl~~i~~~l~~-~~l~I~~  158 (315)
                       ...  .+...+.-+--.  ....--.+.+.-|.|||-|.+.+..|.. .++.-.+
T Consensus       416 lsdne~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~~~~niTeF~  471 (521)
T PRK12483        416 LTDDELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLGPRWNISLFH  471 (521)
T ss_pred             CCCCHHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhCCCcceeeee
Confidence             100  000000000000  1122345677889999999999999985 3554433

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=86.27  E-value=2.7  Score=35.47  Aligned_cols=64  Identities=19%  Similarity=0.373  Sum_probs=45.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      -.+.+.-.|.||.|+++++.|+..|.||.+--+.-..  +....++.+.+        ++..++++.+.|....
T Consensus         5 rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g--------~~~~~EQi~kQL~kLi   70 (163)
T COG0440           5 RILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSG--------DEQVLEQIIKQLNKLI   70 (163)
T ss_pred             EEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcC--------CcchHHHHHHHHHhhc
Confidence            4677888999999999999999999999988876543  33334444433        1235566777665544

>PRK08198 threonine dehydratase; Provisional

Probab=86.21  E-value=5  Score=38.89  Aligned_cols=36  Identities=14%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS   69 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~   69 (315)
                      ....+.|.-+|+||-|++++..+++.|.||.+....
T Consensus       326 r~~~l~v~l~D~PG~L~~ll~~i~~~g~NI~~i~~~  361 (404)
T PRK08198        326 RYLKLRVRLPDRPGQLAKLLSIIAELGANVIDVDHD  361 (404)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhhCCCceEEEEEE
Confidence            445789999999999999999999999999987765

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=86.05  E-value=7  Score=37.47  Aligned_cols=64  Identities=19%  Similarity=0.219  Sum_probs=44.2

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe---e-C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT---H-N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t---~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      ....+.|.-+|+||.|+++++.++++|.||.+..-..   . + +.+.-.+.+.. .      +++..+.|.+.|.
T Consensus       304 r~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet-~------~~~~~~~i~~~L~  372 (380)
T TIGR01127       304 RKVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLET-R------GKEHLDEILKILR  372 (380)
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEe-C------CHHHHHHHHHHHH
Confidence            4458899999999999999999999999998875431   1 1 34444455543 1      1345556666664

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=86.02  E-value=1.4  Score=44.41  Aligned_cols=51  Identities=14%  Similarity=0.350  Sum_probs=40.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      +.+..+.+...|+||.+..++..|.++++||...++...  ++.++.++.+..
T Consensus       449 ~~~~~li~~~~D~pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~  501 (525)
T TIGR01327       449 PEGIMLIILHLDKPGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQ  501 (525)
T ss_pred             cCccEEEEEecCcCCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCC
Confidence            445556667799999999999999999999999988764  466777776654

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN02551 aspartokinase

Probab=85.78  E-value=16  Score=36.85  Aligned_cols=114  Identities=12%  Similarity=0.241  Sum_probs=69.9

Q ss_pred             CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      .+.+.|+|.+.   +++|+++++.+.|+++|++|.-.  .+..  .--.|.+.. .   .+.   ..+.+++.+...+..
T Consensus       364 ~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~I--ssSe--~sIs~~v~~-~---~~~---~~~~i~~~l~~l~~e  432 (521)
T PLN02551        364 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE--VSISLTLDP-S---KLW---SRELIQQELDHLVEE  432 (521)
T ss_pred             CCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEE--eccC--CEEEEEEeh-h---Hhh---hhhhHHHHHHHHHHH
Confidence            34567777655   68999999999999999999865  2221  223455544 1   111   122333333221110


Q ss_pred             CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC--CCCc
Q 021245          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR--DRAK  280 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~--DRpG  280 (315)
                                              +.+                         ...|.+.    .+.++|.|.+.  .+||
T Consensus       433 ------------------------l~~-------------------------~~~V~v~----~~vAiISvVG~~~~~~g  459 (521)
T PLN02551        433 ------------------------LEK-------------------------IAVVNLL----QGRSIISLIGNVQRSSL  459 (521)
T ss_pred             ------------------------hhc-------------------------CCeEEEe----CCEEEEEEEccCCCCcc
Confidence                                    100                         0124443    35677777754  6899


Q ss_pred             hHHHHHhhhcCCceEEEEEEEEe
Q 021245          281 LMFDIVCTLTDMQYVVFHAAISS  303 (315)
Q Consensus       281 LL~~I~~~l~~~~i~I~~AkI~T  303 (315)
                      ++.++-.+|.+.||+|..-..++
T Consensus       460 vaariF~aLa~~gInV~mIsqga  482 (521)
T PLN02551        460 ILEKVFRVLRTNGVNVQMISQGA  482 (521)
T ss_pred             HHHHHHHHHHHCCCCeEEEEecC
Confidence            99999999999999997766433

>PRK06349 homoserine dehydrogenase; Provisional

Probab=85.40  E-value=4.6  Score=39.55  Aligned_cols=51  Identities=20%  Similarity=0.281  Sum_probs=40.2

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      ...+.|.+...|+||.|++|+++|.++++||.+..-....+....++.+++
T Consensus       346 ~~~yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~~~~~~ivivT~  396 (426)
T PRK06349        346 ESKYYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTH  396 (426)
T ss_pred             ceeEEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCCCCceeEEEEEE
Confidence            455788899999999999999999999999997654433344556667776

>PRK09084 aspartate kinase III; Validated

Probab=85.21  E-value=25  Score=34.70  Aligned_cols=106  Identities=19%  Similarity=0.246  Sum_probs=65.9

Q ss_pred             CceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          126 GDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       126 ~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      .+...|+|.+.   +.+|+++++...|+++|+||.-..  +.  ..--+|.|.. .+  . . ......+.+.+.+.|..
T Consensus       304 ~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~--ss--e~sIs~~i~~-~~--~-~-~~~~~~~~~~l~~el~~  374 (448)
T PRK09084        304 RNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLIT--TS--EVSVSLTLDT-TG--S-T-STGDTLLTQALLTELSQ  374 (448)
T ss_pred             CCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEe--cc--CcEEEEEEec-hh--h-h-hhhhHHHHHHHHHHHhc
Confidence            45567777654   689999999999999999998653  21  1233566654 21  1 0 11112232333222221


Q ss_pred             CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA  279 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp  279 (315)
                       .                                                   ..|.+.    .+.++|.|.+.   ++|
T Consensus       375 -~---------------------------------------------------~~i~~~----~~va~IsvvG~gm~~~~  398 (448)
T PRK09084        375 -L---------------------------------------------------CRVEVE----EGLALVALIGNNLSKAC  398 (448)
T ss_pred             -C---------------------------------------------------CeEEEE----CCeEEEEEECCCcccCc
Confidence             0                                                   124443    35788888876   799


Q ss_pred             chHHHHHhhhcCCceEE
Q 021245          280 KLMFDIVCTLTDMQYVV  296 (315)
Q Consensus       280 GLL~~I~~~l~~~~i~I  296 (315)
                      |++.++..+|.+.++.+
T Consensus       399 gv~arif~aL~~~nI~~  415 (448)
T PRK09084        399 GVAKRVFGVLEPFNIRM  415 (448)
T ss_pred             ChHHHHHHHHHhCCeEE
Confidence            99999999999865554

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=85.04  E-value=13  Score=31.38  Aligned_cols=64  Identities=20%  Similarity=0.229  Sum_probs=43.8

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGH  107 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~  107 (315)
                      .+.+.-.|.||.|+++++.++..|+||.+-.+- | .++..--++.+.   |.    +...++|.+.|....+
T Consensus         6 ilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~---g~----~~~~EQi~kQL~kLid   71 (163)
T COG0440           6 ILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVS---GD----EQVLEQIIKQLNKLID   71 (163)
T ss_pred             EEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEc---CC----cchHHHHHHHHHhhcc
Confidence            567888999999999999999999999977775 3 334333333332   21    2346677776655443

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=83.41  E-value=6.1  Score=38.24  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=38.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      ..|.+.+..+|+||.|+++.+.|+.+|+|+..-...-.+ +...=.|+|.-
T Consensus       296 ~ktsl~~~~~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~  346 (386)
T PRK10622        296 AKTTLLMATGQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDV  346 (386)
T ss_pred             CcEEEEEEcCCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEE
Confidence            356676777899999999999999999999876665444 33455677765

>PRK08818 prephenate dehydrogenase; Provisional

Probab=83.23  E-value=1.9  Score=41.49  Aligned_cols=45  Identities=11%  Similarity=0.031  Sum_probs=34.0

Q ss_pred             eEEEEEeC-CCCchHHHHHhhhcCCceEEEEEEEEecCCeeEEEEee
Q 021245          269 SVVNVKCR-DRAKLMFDIVCTLTDMQYVVFHAAISSDGPHASQVRVL  314 (315)
Q Consensus       269 tvieV~a~-DRpGLL~~I~~~l~~~~i~I~~AkI~T~g~~a~D~F~v  314 (315)
                      +-+-+.-+ |+||-|++|+..|++.||||.+-.+ .....-+-.|||
T Consensus       296 ~~l~~~v~~d~pG~L~~vl~~la~~~INit~Ies-~~~r~~~y~f~i  341 (370)
T PRK08818        296 LTLSVYLPEDRPGSLRTLLHVFEQHGVNLSSIHS-SRTPAGELHFRI  341 (370)
T ss_pred             eEEEEECCCCCCChHHHHHHHHHHcCcccceEEE-ecccCceEEEEE
Confidence            33436665 9999999999999999999999988 333333333776

>KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism]

Probab=83.02  E-value=1.6  Score=39.35  Aligned_cols=37  Identities=22%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      ..-.|.+...|.||.+++|+++|+..|+||.+--+--
T Consensus        76 krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~  112 (309)
T KOG2663|consen   76 KRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCL  112 (309)
T ss_pred             cceeEEEEecCCchHHHHHHHHHHhccCCchheeeec
Confidence            3456888899999999999999999999999776643

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=82.55  E-value=9  Score=36.74  Aligned_cols=64  Identities=19%  Similarity=0.243  Sum_probs=43.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE---e--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCC
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS---S--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGP  104 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~---t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~  104 (315)
                      ...+.|.-+|+||.|++++..+++.|.||.+-.-.   .  ..+.+.-.+.+. ..+     ++..+.|.+.|.+
T Consensus       305 ~~~l~v~l~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~ve-t~~-----~~~~~~i~~~L~~  373 (380)
T TIGR01127       305 KVRIETVLPDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLE-TRG-----KEHLDEILKILRD  373 (380)
T ss_pred             EEEEEEEeCCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEE-eCC-----HHHHHHHHHHHHH
Confidence            34788999999999999999999999999976543   1  234443333332 212     2345566666654

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=82.07  E-value=76  Score=33.91  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=64.8

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|+|.+.   +.+|.++++..+|++.|++|.-.... .++.. -.|.+...         ....+.+.|.... .. 
T Consensus       316 ~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~-~s~~s-is~~i~~~---------~~~~~~~~l~~~~-~~-  382 (810)
T PRK09466        316 DVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVH-PDRQL-LQLAYTSE---------VADSALKLLDDAA-LP-  382 (810)
T ss_pred             CEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEec-CCCcE-EEEEEeHH---------HHHHHHHHHHhhc-CC-
Confidence            4556777765   77899999999999999999744322 22222 23444421         1122233333221 10 


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~  158 (315)
                           .+..    -..+...|.+.+.   .++|+.+++..+|++.|+++..
T Consensus       383 -----~~i~----v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~ii~  424 (810)
T PRK09466        383 -----GELK----LREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEFIW  424 (810)
T ss_pred             -----CcEE----EeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcEEE
Confidence                 1111    1236677888874   6899999999999999999853

>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH)

Probab=82.07  E-value=5.4  Score=31.70  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=29.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      .+.+.+..+|+||-|+++...|+.+|+|+.  +|.+
T Consensus        41 ktSlifsl~~~pGsL~~iL~~Fa~~gINLt--~IES   74 (115)
T cd04930          41 KATLLFSLKEGFSSLSRILKVFETFEAKIH--HLES   74 (115)
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHCCCCEE--EEEC
Confidence            466667779999999999999999999999  6654

ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK09181 aspartate kinase; Validated

Probab=81.00  E-value=19  Score=35.94  Aligned_cols=35  Identities=11%  Similarity=0.127  Sum_probs=28.6

Q ss_pred             CCeeEEEEEeCC--CCchHHHHHhhhcCCceEEEEEE
Q 021245          266 KGYSVVNVKCRD--RAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       266 ~~~tvieV~a~D--RpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      .+.++|.|.+..  +||+..++-.+|.+.||+|..-.
T Consensus       400 ~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~  436 (475)
T PRK09181        400 RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALH  436 (475)
T ss_pred             CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEE
Confidence            356778787654  89999999999999999996544

>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]

Probab=80.82  E-value=3.1  Score=34.97  Aligned_cols=35  Identities=17%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYI   68 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I   68 (315)
                      +..++.....+.||+++.+++.++..|++|.++-.
T Consensus        94 gViei~~~~~~~pgi~A~V~~~iak~gi~Irqi~~  128 (167)
T COG2150          94 GVIEIYPEDARYPGILAGVASLIAKRGISIRQIIS  128 (167)
T ss_pred             eEEEEEeccCCCccHHHHHHHHHHHcCceEEEEec
Confidence            34445555678999999999999999999995433

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=80.11  E-value=17  Score=25.12  Aligned_cols=28  Identities=21%  Similarity=0.531  Sum_probs=24.2

Q ss_pred             EEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245          130 AIELIGR---DRPGLLSEISAVLANLRFNVA  157 (315)
Q Consensus       130 ~i~i~~~---DrpgLl~~i~~~l~~~~l~I~  157 (315)
                      .|.+.+.   +.||+++++..+|++.|++|.
T Consensus         3 ~isvvG~~~~~~~gi~~~if~aL~~~~I~v~   33 (64)
T cd04937           3 KVTIIGSRIRGVPGVMAKIVGALSKEGIEIL   33 (64)
T ss_pred             EEEEECCCccCCcCHHHHHHHHHHHCCCCEE
Confidence            4566664   889999999999999999995

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1u8s_A	192	Glycine cleavage system transcriptional repressor,	4e-09
2nyi_A	195	Unknown protein; protein structure initiative, PSI	8e-07
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Length = 192

 Score = 54.7 bits (131), Expect = 4e-09
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 8/132 (6%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           V+     ++PGI  EVV++++     I  + I+  G  F  +  +             I 
Sbjct: 8   VITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS-------GSPSNIT 60

Query: 97  YIEKALGPKGHITAGAKTW-PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFN 155
            +E  L   G           +      +      + +   D+ GL  + +   A  +  
Sbjct: 61  RVETTLPLLGQQHDLITMMKRTSPHDHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIG 120

Query: 156 VAAAEVWTHNRR 167
           +A+    T ++ 
Sbjct: 121 MASLSAQTISKD 132

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Length = 195

 Score = 47.8 bits (113), Expect = 8e-07
 Identities = 20/128 (15%), Positives = 41/128 (32%), Gaps = 5/128 (3%)

Query: 37  VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTID 96
           VV V   ++ GI+ +    L ++   +  + ++  GG F  +  V             ++
Sbjct: 7   VVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKLIQSALE 66

Query: 97  YIEKALGPKGHITAGAKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNV 156
                        +                    + + G D  G++  ++AVLA    N+
Sbjct: 67  SALPGFQISTRRASSVAERHVSPDTREYE-----LYVEGPDSEGIVEAVTAVLAKKGANI 121

Query: 157 AAAEVWTH 164
              E  T 
Sbjct: 122 VELETETL 129

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Length = 88

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 7/71 (9%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTR 188
             I ++G D+ G+ ++I+ V++    N+    +   +    C L +        V +  +
Sbjct: 6   AGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIF-------VKNTDK 58

Query: 189 LSLMEEQLKNI 199
           L+ + ++L+ +
Sbjct: 59  LTTLMDKLRKV 69

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 4e-04
 Identities = 24/150 (16%), Positives = 49/150 (32%), Gaps = 25/150 (16%)

Query: 164 HNRRIACVLYVN--DDTTCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFT 221
             + I  V      D+  C+ V D  +  L +E++ +I+   D           F     
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG---TLRLFWT-LL 72

Query: 222 HVDRRLHQMFFAD---RDYEGGGVTTADQV-DHTPSFKPEITVERLEDKGYSVV------ 271
                + Q F  +    +Y    + +  +     PS    + +E+  D+ Y+        
Sbjct: 73  SKQEEMVQKFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQR-DRLYNDNQVFAKY 129

Query: 272 NVKCRDRAKLMFDI---VCTLTDMQYVVFH 298
           NV    R +    +   +  L   + V+  
Sbjct: 130 NVS---RLQPYLKLRQALLELRPAKNVLID 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.78
2nyi_A	195	Unknown protein; protein structure initiative, PSI	99.77
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.72
1u8s_A	192	Glycine cleavage system transcriptional repressor,	99.69
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.93
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.58
2f06_A	144	Conserved hypothetical protein; structural genomic	98.58
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.25
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	98.22
2f06_A	144	Conserved hypothetical protein; structural genomic	98.18
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.96
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	97.77
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.74
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.7
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.68
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.68
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.62
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	97.59
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.59
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.51
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	97.41
3o1l_A	302	Formyltetrahydrofolate deformylase; structural gen	97.38
3obi_A	288	Formyltetrahydrofolate deformylase; structural gen	97.37
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.34
3lou_A	292	Formyltetrahydrofolate deformylase; structural gen	97.25
3n0v_A	286	Formyltetrahydrofolate deformylase; formyl transfe	97.24
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	97.14
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	97.13
3nrb_A	287	Formyltetrahydrofolate deformylase; N-terminal ACT	97.11
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	97.05
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.94
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.78
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.68
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	96.58
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	96.58
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	96.37
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	96.37
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	96.3
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	96.21
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	96.13
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	96.1
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	96.02
1y7p_A	223	Hypothetical protein AF1403; structural genomics,	95.98
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	95.54
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	95.26
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	95.04
2jhe_A	190	Transcription regulator TYRR; aromatic hydrocarbon	94.9
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	93.53
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	93.11
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	92.71
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	92.25
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	91.27
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	90.26
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	89.95
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	89.4
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	88.27
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	88.23
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	87.71
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	86.86
3luy_A	329	Probable chorismate mutase; structural genomics, A	86.26
3mwb_A	313	Prephenate dehydratase; L-Phe, PSI, MCSG, structur	85.24
3luy_A	329	Probable chorismate mutase; structural genomics, A	83.83
2qmx_A	283	Prephenate dehydratase; APC86053, L-Phe inhibition	81.72
2qmw_A	267	PDT, prephenate dehydratase; APC85812, prephenate	80.48

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.78  E-value=6.7e-18  Score=146.34  Aligned_cols=157  Identities=17%  Similarity=0.110  Sum_probs=114.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC-Cc
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA-GA  112 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~-~~  112 (315)
                      ...+|+|+|+|||||++.|+++|+++|+||++|++++..|.+.-.|.+..+. .  ..+...+.|++.|........ .+
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~-~--~~~~~~~~l~~~L~~~~~~~~~~~   80 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNA-K--DGKLIQSALESALPGFQISTRRAS   80 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS-S--SSHHHHHHHHHHSTTCEEEEEECC
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecC-c--cchhHHHHHHHHHHHHHHhcCCeE
Confidence            4578999999999999999999999999999999998666555477776432 1  222356788888876542110 01


Q ss_pred             ccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHH
Q 021245          113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLS  190 (315)
Q Consensus       113 ~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~  190 (315)
                      ..... . . ......+.|+|.|+||||++++|+++|+++|+||.+++.+|.+  .+..+.|++.. ..+.+  +... +
T Consensus        81 ~~~~~-~-~-~~~~~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~-~~~~~--~~~~-~  153 (195)
T 2nyi_A           81 SVAER-H-V-SPDTREYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGS-RVAFP--FPLY-Q  153 (195)
T ss_dssp             CC------C-CTTEEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEE-EEEEE--GGGH-H
T ss_pred             EEEeC-C-c-CCCCcEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEE-EEEcC--CCcc-H
Confidence            11010 0 1 3344678999999999999999999999999999999999976  55667888776 33323  2335 7


Q ss_pred             HHHHHHHHHH
Q 021245          191 LMEEQLKNIL  200 (315)
Q Consensus       191 ~l~~~L~~~L  200 (315)
                      .|++.|....
T Consensus       154 ~l~~~l~~~a  163 (195)
T 2nyi_A          154 EVVTALSRVE  163 (195)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7888886544

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=99.77  E-value=3e-18  Score=148.50  Aligned_cols=137  Identities=13%  Similarity=0.106  Sum_probs=104.1

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  206 (315)
                      ..++|+|+|+|||||++.|+++|+++|+||.+|++++..+.....|.|.. +..   ....+++.|++.|...+.+..  
T Consensus         4 ~~~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~-~~~---~~~~~~~~l~~~L~~~~~~~~--   77 (195)
T 2nyi_A            4 QSFVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSL-NAK---DGKLIQSALESALPGFQISTR--   77 (195)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSS---SSHHHHHHHHHHSTTCEEEEE--
T ss_pred             eEEEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEe-cCc---cchhHHHHHHHHHHHHHHhcC--
Confidence            45799999999999999999999999999999999998877666888876 321   223356666666643322100  


Q ss_pred             ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHH
Q 021245          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV  286 (315)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~  286 (315)
                                      ..-++                      +.   ++    . ..+...++|+|.|+|||||+++|+
T Consensus        78 ----------------~~~~~----------------------~~---~~----~-~~~~~~~iltv~g~DrpGiva~Vt  111 (195)
T 2nyi_A           78 ----------------RASSV----------------------AE---RH----V-SPDTREYELYVEGPDSEGIVEAVT  111 (195)
T ss_dssp             ----------------ECCCC---------------------------------C-CTTEEEEEEEEEEECCTTHHHHHH
T ss_pred             ----------------CeEEE----------------------Ee---CC----c-CCCCcEEEEEEEeCCCcCHHHHHH
Confidence                            00001                      00   11    1 234567899999999999999999


Q ss_pred             hhhcCCceEEEEEEEEecC--CeeEEEEeeC
Q 021245          287 CTLTDMQYVVFHAAISSDG--PHASQVRVLE  315 (315)
Q Consensus       287 ~~l~~~~i~I~~AkI~T~g--~~a~D~F~v~  315 (315)
                      .+|+++|+||..+++.|.+  ++++|.||++
T Consensus       112 ~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~  142 (195)
T 2nyi_A          112 AVLAKKGANIVELETETLPAPFAGFTLFRMG  142 (195)
T ss_dssp             HHHHHTTCEEEEEEEEEEECSSTTCEEEEEE
T ss_pred             HHHHHcCCCEEEceeeecccccCCCCeEEEE
Confidence            9999999999999999999  8899999984

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.72  E-value=5.3e-17  Score=140.16  Aligned_cols=136  Identities=13%  Similarity=0.182  Sum_probs=103.1

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  206 (315)
                      ..++|+|+|+||||++++|+++|+++|+||.++++++.++.....+.|.. +       ...++.|++.|.+.+. +.. 
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~-~-------~~~~~~l~~~L~~~~~-~~~-   74 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPLLGQ-QHD-   74 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHHHHH-HHT-
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec-C-------CCCHHHHHHHHHHHHH-hcC-
Confidence            35789999999999999999999999999999999998887777888876 2       1366788888876552 211 


Q ss_pred             ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHH
Q 021245          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIV  286 (315)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~  286 (315)
                                      ..-++..     .  .           +    ++     +..+...++++|.|+||||+|++|+
T Consensus        75 ----------------~~~~~~~-----~--~-----------~----~~-----~~~~~~~~~l~v~~~D~~Gil~~v~  111 (192)
T 1u8s_A           75 ----------------LITMMKR-----T--S-----------P----HD-----HQTHAYTVEVYVESDDKLGLTEKFT  111 (192)
T ss_dssp             ----------------CEEEEEE-----E--C-----------C----CC-----CCCCSEEEEEEEEESCCTTHHHHHH
T ss_pred             ----------------CEEEEEe-----C--C-----------C----CC-----CccCCceEEEEEEeCCCccHHHHHH
Confidence                            0000100     0  0           0    01     2344567899999999999999999


Q ss_pred             hhhcCCceEEEEEEEEecCC----eeEEEEeeC
Q 021245          287 CTLTDMQYVVFHAAISSDGP----HASQVRVLE  315 (315)
Q Consensus       287 ~~l~~~~i~I~~AkI~T~g~----~a~D~F~v~  315 (315)
                      ++|+++|++|..++..|.++    +++|.||++
T Consensus       112 ~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~  144 (192)
T 1u8s_A          112 QFFAQRQIGMASLSAQTISKDKLHSEQNQFHIA  144 (192)
T ss_dssp             HHHHHTTCCEEEEEEEEEC--------CEEEEE
T ss_pred             HHHHHcCCcHHHhhhhcccCCccCCCCCEEEEE
Confidence            99999999999999999995    799999974

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=99.69  E-value=3.1e-16  Score=135.36  Aligned_cols=155  Identities=17%  Similarity=0.207  Sum_probs=106.7

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCC---CCCC
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKG---HITA  110 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~---~~~~  110 (315)
                      ....|+|+|+||||++++++++|+++|+||.++++++.+|.+.-.+.+..+.       ...+.|++.|....   ....
T Consensus         5 ~~~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-------~~~~~l~~~L~~~~~~~~~~~   77 (192)
T 1u8s_A            5 QHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-------SNITRVETTLPLLGQQHDLIT   77 (192)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-------HHHHHHHHHHHHHHHHHTCEE
T ss_pred             cEEEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-------CCHHHHHHHHHHHHHhcCCEE
Confidence            3578999999999999999999999999999999998777776677776431       23445555543211   1000


Q ss_pred             Ccc-cCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC----eEEEEEEEEeCCCCCcCCC
Q 021245          111 GAK-TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR----RIACVLYVNDDTTCRAVGD  185 (315)
Q Consensus       111 ~~~-~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~----~~~d~F~V~~~~~g~~~~~  185 (315)
                      ..+ ...+   .+......+.|+|.|+||||++++|+++|+++|+||.+++..|.+.    +..+.|++.. ..+.+  +
T Consensus        78 ~~~~~~~~---~~~~~~~~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~-~~~~~--~  151 (192)
T 1u8s_A           78 MMKRTSPH---DHQTHAYTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAI-SARVD--S  151 (192)
T ss_dssp             EEEEECCC---CCCCCSEEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEE-EEEEC--T
T ss_pred             EEEeCCCC---CCccCCceEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEE-EEeCC--C
Confidence            000 0000   0133446789999999999999999999999999999999999863    4667777766 32222  1


Q ss_pred             hHHHHHHHHHHHHHHc
Q 021245          186 QTRLSLMEEQLKNILR  201 (315)
Q Consensus       186 ~~~~~~l~~~L~~~L~  201 (315)
                      ....+.|++.|.+...
T Consensus       152 ~~~~~~l~~~l~~~~~  167 (192)
T 1u8s_A          152 GCNLMQLQEEFDALCT  167 (192)
T ss_dssp             TSCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            2245778888865443

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.93  E-value=5.5e-08  Score=92.90  Aligned_cols=138  Identities=14%  Similarity=0.080  Sum_probs=91.6

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~  113 (315)
                      ....|+|.|+||||+.+.+++.|+++|+||.+.+.+..+|++.-...+.-+.+. .+.+.+.+.++.. ...+...-..+
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~-~~~~~l~~~l~~~-~~~~~~~~~~~   88 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADV-ADGPALRHDVEAA-IRKVGLDVSIE   88 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHH-HTSHHHHHHHHHH-HHHTTCEEEEE
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCc-CCHHHHHHHHHHH-HHHcCeEEEEE
Confidence            457899999999999999999999999999999999988887655555422111 1112333333322 11111100000


Q ss_pred             -cCCceeeeecCCCceEEEEEEeCC-cccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          114 -TWPSKQVGVHSVGDHTAIELIGRD-RPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       114 -~~~~~~v~~~~~~~~t~i~i~~~D-rpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                       .....   ......+..+++.+++ ++|++.+|+.+|+++|+||.+.+..+......-.|.+..
T Consensus        89 ~~~~~~---~~~~~~~~~~~llg~~~~~~~~~~i~~~l~~~~~Ni~~l~~~~~~~~~~~~~~v~~  150 (415)
T 3p96_A           89 RSDDVP---IIREPSTHTIFVLGRPITAAAFGAVAREVAALGVNIDLIRGVSDYPVIGLELRVSV  150 (415)
T ss_dssp             ECSSSC---SSCCCCSEEEEEEESSCCHHHHHHHHHHHHHTTCEEEEEEEEESSSSEEEEEEEEC
T ss_pred             ECCccc---ccCCCCcEEEEEEeCCCCHHHHHHHHHHHHHcCCCccceeeccCCCceEEEEEeeC
Confidence             00000   0123467889999999 999999999999999999998887774333333466655

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.58  E-value=9.8e-07  Score=84.13  Aligned_cols=126  Identities=13%  Similarity=0.070  Sum_probs=87.7

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCC
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDE  206 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~  206 (315)
                      ...+|+|.|+||||+.+.|+++|+++|+||.+.+-++.++.......+.- +.. .    ...+.|++.|.. +..+.. 
T Consensus        11 ~~~~lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~-~~~-~----~~~~~l~~~l~~-~~~~~~-   82 (415)
T 3p96_A           11 VSVLITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCC-PAD-V----ADGPALRHDVEA-AIRKVG-   82 (415)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEE-CHH-H----HTSHHHHHHHHH-HHHHTT-
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEe-cCC-c----CCHHHHHHHHHH-HHHHcC-
Confidence            46789999999999999999999999999999999888887666666654 211 0    022567777744 333222 


Q ss_pred             ccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC-CCchHHHH
Q 021245          207 DSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD-RAKLMFDI  285 (315)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D-RpGLL~~I  285 (315)
                                      .+-+++.     ..             ..  .+.       ......++++.++| +||++.+|
T Consensus        83 ----------------~~~~~~~-----~~-------------~~--~~~-------~~~~~~~~~llg~~~~~~~~~~i  119 (415)
T 3p96_A           83 ----------------LDVSIER-----SD-------------DV--PII-------REPSTHTIFVLGRPITAAAFGAV  119 (415)
T ss_dssp             ----------------CEEEEEE-----CS-------------SS--CSS-------CCCCSEEEEEEESSCCHHHHHHH
T ss_pred             ----------------eEEEEEE-----CC-------------cc--ccc-------CCCCcEEEEEEeCCCCHHHHHHH
Confidence                            0000100     00             00  000       12345677799999 99999999


Q ss_pred             HhhhcCCceEEEEEEEEe
Q 021245          286 VCTLTDMQYVVFHAAISS  303 (315)
Q Consensus       286 ~~~l~~~~i~I~~AkI~T  303 (315)
                      +..|++.|+||...+.-+
T Consensus       120 ~~~l~~~~~Ni~~l~~~~  137 (415)
T 3p96_A          120 AREVAALGVNIDLIRGVS  137 (415)
T ss_dssp             HHHHHHTTCEEEEEEEEE
T ss_pred             HHHHHHcCCCccceeecc
Confidence            999999999998887766

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.58  E-value=1.8e-06  Score=70.22  Aligned_cols=110  Identities=19%  Similarity=0.177  Sum_probs=72.7

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcccC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAKTW  115 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~~~  115 (315)
                      ..|+|..+|+||.++++++.|++.|+||..-.+....+.-+-.|.+.        +.   ++.++.|....     +   
T Consensus         7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~--------d~---~~a~~~L~~~G-----~---   67 (144)
T 2f06_A            7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS--------DP---DKAYKALKDNH-----F---   67 (144)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES--------CH---HHHHHHHHHTT-----C---
T ss_pred             EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC--------CH---HHHHHHHHHcC-----C---
Confidence            57889999999999999999999999999777653222111123321        11   22233333211     0   


Q ss_pred             CceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEE
Q 021245          116 PSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVL  172 (315)
Q Consensus       116 ~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F  172 (315)
                       ...       ....+.+..+|+||.+++++++|+++|+||.....+..++...-.|
T Consensus        68 -~v~-------~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i  116 (144)
T 2f06_A           68 -AVN-------ITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVI  116 (144)
T ss_dssp             -CEE-------EEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEE
T ss_pred             -eEe-------eeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEE
Confidence             000       1246777899999999999999999999998766653344444444

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.25  E-value=7.7e-06  Score=60.89  Aligned_cols=65  Identities=14%  Similarity=0.339  Sum_probs=51.3

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ....|.|.++||||++++|+++|+++|+||.+....+.++.....+.+.- ++  .    ..++.|.+.|.+
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~-~~--~----~~l~~l~~~L~~   68 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DE--K----QDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SS--C----CCHHHHHHHHHH
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEe-CC--C----CCHHHHHHHHHH
Confidence            45789999999999999999999999999999999887777666676654 22  1    234667777754

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=98.22  E-value=1.3e-05  Score=59.60  Aligned_cols=49  Identities=20%  Similarity=0.214  Sum_probs=43.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ....|+|.++||||++++++++|++.|+||.+.+..+.+|.+.-.+.+.
T Consensus         4 ~~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~   52 (91)
T 1zpv_A            4 MKAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVS   52 (91)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             ceEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEE
Confidence            4568999999999999999999999999999999988778777666664

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.18  E-value=4.1e-05  Score=62.09  Aligned_cols=101  Identities=16%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCCCCCc
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGCDDED  207 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~~~~~  207 (315)
                      ...++|..+|+||.++++++.|+++|+||..-.+....+...-.|.+.         ++   ++.++.|.+.  +. .  
T Consensus         6 ~~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~---------d~---~~a~~~L~~~--G~-~--   68 (144)
T 2f06_A            6 AKQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS---------DP---DKAYKALKDN--HF-A--   68 (144)
T ss_dssp             EEEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES---------CH---HHHHHHHHHT--TC-C--
T ss_pred             EEEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeC---------CH---HHHHHHHHHc--CC-e--
Confidence            357888999999999999999999999999876654332211223221         12   2233333220  10 0  


Q ss_pred             cccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCCCCchHHHHHh
Q 021245          208 SEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRDRAKLMFDIVC  287 (315)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~DRpGLL~~I~~  287 (315)
                                                                        +.       .++++-+.-+|+||.++++++
T Consensus        69 --------------------------------------------------v~-------~~svv~v~~~d~pGvla~i~~   91 (144)
T 2f06_A           69 --------------------------------------------------VN-------ITDVVGISCPNVPGALAKVLG   91 (144)
T ss_dssp             --------------------------------------------------EE-------EEEEEEEEEESSTTHHHHHHH
T ss_pred             --------------------------------------------------Ee-------eeeEEEEEeCCCCcHHHHHHH
Confidence                                                              00       124676788999999999999


Q ss_pred             hhcCCceEEEEEEEE
Q 021245          288 TLTDMQYVVFHAAIS  302 (315)
Q Consensus       288 ~l~~~~i~I~~AkI~  302 (315)
                      +|++.|++|.+....
T Consensus        92 ~L~~~~InI~~~~~~  106 (144)
T 2f06_A           92 FLSAEGVFIEYMYSF  106 (144)
T ss_dssp             HHHHTTCCEEEEEEE
T ss_pred             HHHHCCCCEEEEEEE
Confidence            999999999765543

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.96  E-value=5.2e-05  Score=55.68  Aligned_cols=49  Identities=18%  Similarity=0.419  Sum_probs=40.9

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      .+.|.|.++||||+|++|+++|++.|+||.+..+.+.++.+...|.+..
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~   53 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV   53 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence            4678899999999999999999999999999999876564555555544

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=97.77  E-value=0.0002  Score=52.41  Aligned_cols=65  Identities=14%  Similarity=0.236  Sum_probs=48.2

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      .+.|.|.++|+||++++|+++|++.|+||.+..+.+.++.+...|.+.-.      +....+.+.+.|...
T Consensus         5 ~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~------~~~~l~~l~~~L~~~   69 (88)
T 2ko1_A            5 LAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVK------NTDKLTTLMDKLRKV   69 (88)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEES------SHHHHHHHHHHHTTC
T ss_pred             EEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEEC------CHHHHHHHHHHHhcC
Confidence            45788999999999999999999999999999988755555444444321      223456677777653

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.74  E-value=0.0012  Score=59.88  Aligned_cols=117  Identities=13%  Similarity=0.093  Sum_probs=68.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (315)
                      ...|+|.|+||||+.+.+++.|+++|+||.+.+.++  .+|++.-...+.-+.+ ..+    .+.|++.|.....     
T Consensus         6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~~-~~~----~~~L~~~f~~la~-----   75 (288)
T 3obi_A            6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAAK-VIP----LASLRTGFGVIAA-----   75 (288)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESSC-CCC----HHHHHHHHHHHHH-----
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCCC-CCC----HHHHHHHHHHHHH-----
Confidence            468999999999999999999999999999999985  4677765555543322 122    2344444322110     


Q ss_pred             ccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245          113 KTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (315)
Q Consensus       113 ~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t  163 (315)
                      ......++.....  ...|-|..--+---|.+|......-.+++.=+-+.+
T Consensus        76 ~~~m~~~l~~~~~--~~ri~vl~Sg~g~nl~~ll~~~~~g~l~~~i~~Vis  124 (288)
T 3obi_A           76 KFTMGWHMRDRET--RRKVMLLVSQSDHCLADILYRWRVGDLHMIPTAIVS  124 (288)
T ss_dssp             HTTCEEEEEETTS--CEEEEEEECSCCHHHHHHHHHHHTTSSCEEEEEEEE
T ss_pred             HcCCEEEeeccCC--CcEEEEEEcCCCCCHHHHHHHHHCCCCCeEEEEEEc
Confidence            0111222332222  233434333344466777777766666544344444

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.70  E-value=0.00076  Score=61.58  Aligned_cols=49  Identities=24%  Similarity=0.367  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee--CCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD--GGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~--~g~~~d~f~v~   82 (315)
                      ....|+|.|+||||+.+.+++.|+++|+||.+++.+++  +|+|.-...+.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~   71 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR   71 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence            45689999999999999999999999999999999974  68776555554

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.68  E-value=0.0014  Score=59.30  Aligned_cols=49  Identities=14%  Similarity=0.114  Sum_probs=41.4

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~   82 (315)
                      ....|+|.|+||||+.+.+++.|+++|+||.+.+.++  .+|++.-...+.
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~   57 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFR   57 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEe
Confidence            3468999999999999999999999999999999996  467776444443

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.68  E-value=0.001  Score=55.29  Aligned_cols=108  Identities=15%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (315)
Q Consensus        34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (315)
                      +...|+|. .+|+||.++++...|++.|+||....... .+|...-.|.|...+.     ++..+.|++ +...+..   
T Consensus        24 ~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~l~~---   94 (167)
T 2re1_A           24 NQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDY-----KQTLEILSE-RQDSIGA---   94 (167)
T ss_dssp             CCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGH-----HHHHHHHHH-SSTTTTC---
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHH-----HHHHHHHHH-HHHHcCC---
Confidence            67788888 49999999999999999999998555432 3454445677753111     122333333 2222211   


Q ss_pred             cccCCceeeeecCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEEE
Q 021245          112 AKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~i~~~D---rpgLl~~i~~~l~~~~l~I~~  158 (315)
                          ..  +.  ...+...+.|.+.+   +||+++++..+|+++|+||..
T Consensus        95 ----~~--i~--~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~  136 (167)
T 2re1_A           95 ----AS--ID--GDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQM  136 (167)
T ss_dssp             ----SE--EE--EESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCE
T ss_pred             ----ce--EE--ecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEE
Confidence                01  11  12467889999887   999999999999999999987

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.62  E-value=0.0019  Score=58.49  Aligned_cols=116  Identities=15%  Similarity=0.008  Sum_probs=68.1

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCC
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAG  111 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~  111 (315)
                      ....|+|.|+||||+.+.+++.|+++|+||.+.+.++  .+|+|.-...+..+ +.  ..+.+.+.++.. ...+     
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~-~~--~~~~L~~~f~~l-a~~~-----   76 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP-VA--GVNDFNSAFGKV-VEKY-----   76 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC-C-----CHHHHHHHHH-HGGG-----
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC-CC--CHHHHHHHHHHH-HHHc-----
Confidence            4578999999999999999999999999999999985  46777644444322 21  112334444322 1211     


Q ss_pred             cccCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEe
Q 021245          112 AKTWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWT  163 (315)
Q Consensus       112 ~~~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t  163 (315)
                         .....+.....+....|.+.+..  --|.+|......-.+++.=+-+.+
T Consensus        77 ---~m~~~l~~~~~~~ri~vl~Sg~g--~nl~~ll~~~~~g~l~~~i~~Vis  123 (287)
T 3nrb_A           77 ---NAEWWFRPRTDRKKVVIMVSKFD--HCLGDLLYRHRLGELDMEVVGIIS  123 (287)
T ss_dssp             ---TCEEEEEETTCCCEEEEEECSCC--HHHHHHHHHHHHTSSCCEEEEEEE
T ss_pred             ---CCeeEeeccCCCcEEEEEEeCCC--cCHHHHHHHHHCCCCCeEEEEEEe
Confidence               12223333222334444444443  456666666666555543334444

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=97.59  E-value=0.0005  Score=57.17  Aligned_cols=110  Identities=15%  Similarity=0.080  Sum_probs=73.7

Q ss_pred             CceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee-CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245          126 GDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH-NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (315)
Q Consensus       126 ~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  203 (315)
                      .+.+.|+|. .+|+||.+++|.+.|+++|+||..-..... +|...-.|.|.. .      +.   ++..+.|.+ +..+
T Consensus        23 ~~~~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~-~------~~---~~a~~~l~~-~~~~   91 (167)
T 2re1_A           23 KNQARINVRGVPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPR-G------DY---KQTLEILSE-RQDS   91 (167)
T ss_dssp             CCCEEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECG-G------GH---HHHHHHHHH-SSTT
T ss_pred             CCEEEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEec-h------HH---HHHHHHHHH-HHHH
Confidence            466788888 499999999999999999999976543322 233334566643 1      11   223333432 2111


Q ss_pred             CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC---CCc
Q 021245          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD---RAK  280 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D---RpG  280 (315)
                      ..                                                . ..|.+.    .+.+++.|.+.+   +||
T Consensus        92 l~------------------------------------------------~-~~i~~~----~~~a~vsvvG~~m~~~~G  118 (167)
T 2re1_A           92 IG------------------------------------------------A-ASIDGD----DTVCKVSAVGLGMRSHVG  118 (167)
T ss_dssp             TT------------------------------------------------C-SEEEEE----SSEEEEEEECSSCTTCCC
T ss_pred             cC------------------------------------------------C-ceEEec----CCEEEEEEECCCcCCCcC
Confidence            11                                                0 234443    468899999987   999


Q ss_pred             hHHHHHhhhcCCceEEEEE
Q 021245          281 LMFDIVCTLTDMQYVVFHA  299 (315)
Q Consensus       281 LL~~I~~~l~~~~i~I~~A  299 (315)
                      .++++..+|.+.|++|.+-
T Consensus       119 v~a~i~~aL~~~~InI~~i  137 (167)
T 2re1_A          119 VAAKIFRTLAEEGINIQMI  137 (167)
T ss_dssp             HHHHHHHHHHHTTCCCCEE
T ss_pred             HHHHHHHHHHHCCCcEEEE
Confidence            9999999999999999883

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.59  E-value=0.0015  Score=59.35  Aligned_cols=48  Identities=13%  Similarity=0.096  Sum_probs=41.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHV   81 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v   81 (315)
                      ....|++.|+||||+.+.+++.|+++|+||.+.+.++  .+|+|.-...+
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   58 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVF   58 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEE
Confidence            4578999999999999999999999999999999996  46777644444

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.51  E-value=0.00084  Score=56.43  Aligned_cols=110  Identities=12%  Similarity=0.135  Sum_probs=73.2

Q ss_pred             CceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHc
Q 021245          126 GDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILR  201 (315)
Q Consensus       126 ~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~  201 (315)
                      .+.+.|+|. .+|+||.+++|.+.|+++|+||.-....+.   ++...-.|.+..          +..++..+.|.+ +.
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~----------~d~~~a~~~l~~-~~   81 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPR----------SDGRRAMEILKK-LQ   81 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEH----------HHHHHHHHHHHT-TT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEcc----------ccHHHHHHHHHH-HH
Confidence            466777774 689999999999999999999886544433   123333455543          122333333322 11


Q ss_pred             CCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CC
Q 021245          202 GCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DR  278 (315)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DR  278 (315)
                      ....                                                . ..|.+.    .+.+++.|.+.   ++
T Consensus        82 ~~~~------------------------------------------------~-~~v~~~----~~~a~VsvVG~gm~~~  108 (178)
T 2dtj_A           82 VQGN------------------------------------------------W-TNVLYD----DQVGKVSLVGAGMKSH  108 (178)
T ss_dssp             TTTT------------------------------------------------C-SEEEEE----SCEEEEEEEEECCTTC
T ss_pred             HhcC------------------------------------------------C-CeEEEe----CCeEEEEEEcCCcccC
Confidence            1110                                                0 235544    46788999987   89


Q ss_pred             CchHHHHHhhhcCCceEEEEE
Q 021245          279 AKLMFDIVCTLTDMQYVVFHA  299 (315)
Q Consensus       279 pGLL~~I~~~l~~~~i~I~~A  299 (315)
                      ||.++++.++|++.||+|.+-
T Consensus       109 ~Gv~arif~aLa~~~InI~~i  129 (178)
T 2dtj_A          109 PGVTAEFMEALRDVNVNIELI  129 (178)
T ss_dssp             HHHHHHHHHHHHHTTCCCCEE
T ss_pred             ccHHHHHHHHHHHCCCCEEEE
Confidence            999999999999999999884

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=97.41  E-value=0.006  Score=51.12  Aligned_cols=109  Identities=18%  Similarity=0.150  Sum_probs=71.5

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (315)
Q Consensus        33 ~~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (315)
                      .+.+.|+|. .+|+||.++++...|++.|+||.-....+.   +|..--.|.+...         -..+.++.|......
T Consensus        13 ~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~---------d~~~a~~~l~~~~~~   83 (178)
T 2dtj_A           13 KSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRS---------DGRRAMEILKKLQVQ   83 (178)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHH---------HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccc---------cHHHHHHHHHHHHHh
Confidence            367888884 699999999999999999999985554432   3333334666531         112223334331110


Q ss_pred             CCCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEE
Q 021245          109 TAGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAA  158 (315)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~  158 (315)
                           .... .+..  ..+...|.|.|.   ++||+++++.++|++.|+||..
T Consensus        84 -----~~~~-~v~~--~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~  128 (178)
T 2dtj_A           84 -----GNWT-NVLY--DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIEL  128 (178)
T ss_dssp             -----TTCS-EEEE--ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCE
T ss_pred             -----cCCC-eEEE--eCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEE
Confidence                 0011 1221  236677788776   8999999999999999999987

>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}

Probab=97.38  E-value=0.00075  Score=61.58  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=47.7

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      ....+++.|+||||+.+.|+++|+++|+||.++.-++.  .+.......+.. +.+ ..    ..+.|+++|.
T Consensus        21 ~~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~-~~~-~~----~~~~L~~~l~   87 (302)
T 3o1l_A           21 RTFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA-DTL-PF----DLDGFREAFT   87 (302)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG-GGS-SS----CHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec-CCC-CC----CHHHHHHHHH
Confidence            45789999999999999999999999999999998875  355555444443 211 11    2356666664

>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}

Probab=97.37  E-value=0.00094  Score=60.58  Aligned_cols=66  Identities=17%  Similarity=0.229  Sum_probs=48.2

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+.+++.|+||||+.+.|+++|+++|+||.+.+-++.  .+.......+.- +.+ ..    ..+.|++.|..
T Consensus         5 ~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~~-~~----~~~~L~~~f~~   72 (288)
T 3obi_A            5 HQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA-AAK-VI----PLASLRTGFGV   72 (288)
T ss_dssp             CEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE-SSC-CC----CHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc-CCC-CC----CHHHHHHHHHH
Confidence            44789999999999999999999999999999998753  355555554544 222 11    23567777743

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.34  E-value=0.0018  Score=53.65  Aligned_cols=107  Identities=13%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             CCeEEEEEEe-cCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245           33 PECTVVKVDS-VNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (315)
Q Consensus        33 ~~~~~v~V~~-~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (315)
                      ++.+.|+|.+ +|+||.++++...|++.|+||.-......   .|..--.|.|...+..+.  .+.+.+++..+.     
T Consensus        14 ~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a--~~~L~~~~~~~~-----   86 (167)
T 2dt9_A           14 LDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEA--LEALEPVLAEIG-----   86 (167)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHH--HHHHHHHHHHHC-----
T ss_pred             CCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHH--HHHHHHHHHHhC-----
Confidence            4778888876 89999999999999999999985433321   344445677754211100  012222222232     


Q ss_pred             CCCcccCCceeeeecCCCceEEEEEEeCC---cccHHHHHHHHHHhCCceEE
Q 021245          109 TAGAKTWPSKQVGVHSVGDHTAIELIGRD---RPGLLSEISAVLANLRFNVA  157 (315)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~t~i~i~~~D---rpgLl~~i~~~l~~~~l~I~  157 (315)
                             .  .+..  ..+...+.|.|.+   +||+++++.++|++.|+||.
T Consensus        87 -------~--~v~~--~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~  127 (167)
T 2dt9_A           87 -------G--EAIL--RPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIE  127 (167)
T ss_dssp             -------C--EEEE--ECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCC
T ss_pred             -------C--cEEE--eCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEE
Confidence                   1  1111  2467788898876   99999999999999999994

>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}

Probab=97.25  E-value=0.00098  Score=60.55  Aligned_cols=50  Identities=14%  Similarity=0.188  Sum_probs=40.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      ..+++++.|+||||+.++|+++|+++|+||.+++-++.  .+.......+..
T Consensus         9 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~   60 (292)
T 3lou_A            9 HQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHA   60 (292)
T ss_dssp             CEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEc
Confidence            45789999999999999999999999999999998863  355554444443

>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}

Probab=97.24  E-value=0.0013  Score=59.61  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=48.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..++++|.|+||||+.+.|+++|+++|+||.+.+-++.  .+.......+.. +.  ..    ..+.|+++|.+
T Consensus         7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~-~~--~~----~~~~L~~~f~~   73 (286)
T 3n0v_A            7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ-PD--DF----DEAGFRAGLAE   73 (286)
T ss_dssp             CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC-CS--SC----CHHHHHHHHHH
T ss_pred             CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec-CC--CC----CHHHHHHHHHH
Confidence            34789999999999999999999999999999998863  355544444433 22  11    24677777754

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=97.14  E-value=0.056  Score=53.82  Aligned_cols=191  Identities=16%  Similarity=0.139  Sum_probs=118.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +...|.|.+.   .+||..+++..+|++.|+||.-..  +.. .- ..|.|...+.     ++..+.|.+.+.... .+.
T Consensus       354 ~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tSe-~~-Is~vI~~~d~-----~~Av~aLh~~f~~~~-t~~  423 (600)
T 3l76_A          354 GIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSE-VK-VSCVIDQRDA-----DRAIAALSNAFGVTL-SPP  423 (600)
T ss_dssp             SEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--ECS-SE-EEEEEEGGGH-----HHHHHHHHHHTTCCB-CCC
T ss_pred             CeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cCC-CE-EEEEEcHHHH-----HHHHHHHHHhhcccC-CCc
Confidence            6788999976   799999999999999999998444  332 22 2466653211     234556666654321 110


Q ss_pred             Ccc-----cCCceeeeecCCCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee----CC--eEEEEEEEEeCC
Q 021245          111 GAK-----TWPSKQVGVHSVGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH----NR--RIACVLYVNDDT  178 (315)
Q Consensus       111 ~~~-----~~~~~~v~~~~~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~----~~--~~~d~F~V~~~~  178 (315)
                      ...     .++-.-|.  .+.+...|+|. .+|+||+.++|.+.|+++|+||.--.-...    .|  ...-.|.|..  
T Consensus       424 ~~~~~~~~~~~v~Gia--~~~~~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~--  499 (600)
T 3l76_A          424 KNQTDTSHLPAVRGVA--LDQDQAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAE--  499 (600)
T ss_dssp             CCCCC---CCSCCEEE--EECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEH--
T ss_pred             cccccccccCceEEEE--eeCCEEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeH--
Confidence            000     00011122  23456677664 589999999999999999999952222211    13  2334566654  


Q ss_pred             CCCcCCChHHHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEE
Q 021245          179 TCRAVGDQTRLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEI  258 (315)
Q Consensus       179 ~g~~~~~~~~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V  258 (315)
                              +..++..+.|.+ +.....                                                 +.+|
T Consensus       500 --------~d~~~a~~~l~~-~~~~~~-------------------------------------------------~~~v  521 (600)
T 3l76_A          500 --------GDSSQAEAILQP-LIKDWL-------------------------------------------------DAAI  521 (600)
T ss_dssp             --------HHHHHHHHHHHH-HTTTST-------------------------------------------------TCEE
T ss_pred             --------HHHHHHHHHHHH-HHHhcC-------------------------------------------------CceE
Confidence                    233333333422 221111                                                 1335


Q ss_pred             EEeecCCCCeeEEEEEe---CCCCchHHHHHhhhcCCceEEEEEE
Q 021245          259 TVERLEDKGYSVVNVKC---RDRAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       259 ~i~~~~~~~~tvieV~a---~DRpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      .++    .+++.+.|.+   ..+||.-+++-++|++.||+|.+-.
T Consensus       522 ~~~----~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis  562 (600)
T 3l76_A          522 VVN----KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA  562 (600)
T ss_dssp             EEE----CCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE
T ss_pred             EEe----CCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE
Confidence            555    4688999986   5999999999999999999998755

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=97.13  E-value=0.0016  Score=54.04  Aligned_cols=63  Identities=14%  Similarity=0.261  Sum_probs=50.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ..|.|.+.|+||+|++|+++|++.|+||.+..+.+..  +...-+|.+..    .    ...+++|.+.|.+.
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~----d----~~~leqI~kqL~Kl   68 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG----D----EKVLEQIEKQLHKL   68 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES----C----HHHHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEec----c----HHHHHHHHHHHcCC
Confidence            5788999999999999999999999999999987543  55666777754    1    35677888888653

>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}

Probab=97.11  E-value=0.0022  Score=58.15  Aligned_cols=48  Identities=27%  Similarity=0.416  Sum_probs=39.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYV  174 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V  174 (315)
                      ..+.|++.|+||||+.+.|+++|+++|+||.++.-++.  .+.......+
T Consensus         6 ~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~   55 (287)
T 3nrb_A            6 NQYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV   55 (287)
T ss_dssp             TEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE
Confidence            45789999999999999999999999999999998853  3555444444

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=97.05  E-value=0.0029  Score=52.46  Aligned_cols=110  Identities=17%  Similarity=0.132  Sum_probs=72.3

Q ss_pred             CCceEEEEEEe-CCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          125 VGDHTAIELIG-RDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       125 ~~~~t~i~i~~-~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+.+.|+|.+ +|+||.++++.++|+++|+||.-......   .|...-.|.|.. .      +.   ++..+.|.+..
T Consensus        13 ~~~~a~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~-~------d~---~~a~~~L~~~~   82 (167)
T 2dt9_A           13 DLDHAQIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKK-D------FA---QEALEALEPVL   82 (167)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEG-G------GH---HHHHHHHHHHH
T ss_pred             eCCEEEEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEeh-H------HH---HHHHHHHHHHH
Confidence            34667777776 89999999999999999999875332211   123444576654 1      11   22223332211


Q ss_pred             cCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeCC---
Q 021245          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCRD---  277 (315)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~D---  277 (315)
                      . +                       +                       .  .  .|.++    .+.+++.|.+.+   
T Consensus        83 ~-~-----------------------~-----------------------~--~--~v~~~----~~~a~vsvVG~gm~~  107 (167)
T 2dt9_A           83 A-E-----------------------I-----------------------G--G--EAILR----PDIAKVSIVGVGLAS  107 (167)
T ss_dssp             H-H-----------------------H-----------------------C--C--EEEEE----CSEEEEEEEESSGGG
T ss_pred             H-H-----------------------h-----------------------C--C--cEEEe----CCEEEEEEECCCccc
Confidence            0 0                       1                       0  1  34443    467899999986   


Q ss_pred             CCchHHHHHhhhcCCceEEEEE
Q 021245          278 RAKLMFDIVCTLTDMQYVVFHA  299 (315)
Q Consensus       278 RpGLL~~I~~~l~~~~i~I~~A  299 (315)
                      +||.++++.++|.+.||+|..-
T Consensus       108 ~~Gv~a~~f~aL~~~~InI~~i  129 (167)
T 2dt9_A          108 TPEVPAKMFQAVASTGANIEMI  129 (167)
T ss_dssp             STHHHHHHHHHHHHTTCCCCEE
T ss_pred             CcCHHHHHHHHHHHCCCCEEEE
Confidence            9999999999999999999654

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.94  E-value=0.0029  Score=52.58  Aligned_cols=64  Identities=17%  Similarity=0.292  Sum_probs=51.3

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ...+.|...|+||+|++|+++|++.|+||.+..+....  +...-+|.|.. .       ...+++|.+.|.+.
T Consensus         4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~-d-------~~~leql~kQL~Kl   69 (165)
T 2pc6_A            4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG-P-------DEIVEQITKQLNKL   69 (165)
T ss_dssp             EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE-C-------HHHHHHHHHHHHHS
T ss_pred             EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEec-c-------HHHHHHHHHHhcCC
Confidence            35788999999999999999999999999999987543  56667777765 1       35677888888654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.78  E-value=0.019  Score=48.32  Aligned_cols=110  Identities=18%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (315)
Q Consensus        34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (315)
                      +.+.|+|. .+|+||.+++|...|++.|+||.--.....   +|..--.|.+...+...  ..+.++.++..+..     
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~--a~~~L~~~~~el~~-----   87 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPA--AVEKLDSLRNEIGF-----   87 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHH--HHHHHHHTHHHHCC-----
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHH--HHHHHHHHHHhcCc-----
Confidence            56666664 679999999999999999999974433222   56655577776422110  01122222222210     


Q ss_pred             CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEE
Q 021245          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAE  160 (315)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~  160 (315)
                            .++.+    ..+...|.|.|.   ++||+.+++.++|++.|+||....
T Consensus        88 ------~~v~~----~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A           88 ------SQLLY----DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             ------SEEEE----ESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             ------ceEEE----eCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE
Confidence                  01122    235677777765   899999999999999999998655

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.68  E-value=0.078  Score=44.87  Aligned_cols=106  Identities=21%  Similarity=0.201  Sum_probs=71.7

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-ee-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCc
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-SD-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGA  112 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~  112 (315)
                      ...|.|...|+||.|++|+++|+..|+||.+-.+. |. .|..--++.|...       +...++|++.|....+.    
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~-------e~~ieqL~kQL~KLidV----   97 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD-------DKTIEQIEKQAYKLVEV----   97 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC-------TTHHHHHHHHHTTSTTE----
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC-------HHHHHHHHHHhcCcCce----
Confidence            45789999999999999999999999999988886 43 3665545566422       24678888888764431    


Q ss_pred             ccCCceeeee-cC------CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245          113 KTWPSKQVGV-HS------VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       113 ~~~~~~~v~~-~~------~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                           .+|.. ..      ......+.|.+...   -.+|.+.....+.+|.+.
T Consensus        98 -----ikV~dl~~~~~~~v~REl~LiKV~~~~~---r~ei~~i~~~fra~ivDv  143 (193)
T 2fgc_A           98 -----VKVTPIDPLPENRVEREMALIKVRFDED---KQEIFQLVEIFRGKIIDV  143 (193)
T ss_dssp             -----EEEEECCSSGGGEEEEEEEEEEEECSSC---HHHHHHHHHHTTCEEEEE
T ss_pred             -----EEEEEecCCCCccceeEEEEEEEeCCcC---HHHHHHHHHHcCCEEEEE
Confidence                 11221 11      11334556665442   677777777778777764

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=96.58  E-value=0.0082  Score=49.75  Aligned_cols=111  Identities=15%  Similarity=0.127  Sum_probs=67.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~  113 (315)
                      ..|.|.+.|+||+|++++++|+..|+||.+..+.+ . .|...-+|.+.   +.    +..+++|.+.|....+.-...+
T Consensus         4 ~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~---~d----~~~leqI~kqL~Kl~dV~~V~r   76 (164)
T 2f1f_A            4 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV---GD----EKVLEQIEKQLHKLVDVLRVSE   76 (164)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE---SC----HHHHHHHHHHHHHSTTEEEEEE
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe---cc----HHHHHHHHHHHcCCCCEEEEEE
Confidence            47889999999999999999999999999988875 4 36666556664   22    3466777777755332110000


Q ss_pred             cCCceeeeecCCCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245          114 TWPSKQVGVHSVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       114 ~~~~~~v~~~~~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                      ......+    ......+.|.+..  .--.++.+.....+.+|.+.
T Consensus        77 ~~~~~~v----~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv  116 (164)
T 2f1f_A           77 LGQGAHV----EREIMLVKIQASG--YGRDEVKRNTEIFRGQIIDV  116 (164)
T ss_dssp             GGGSCEE----EEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCcccc----eeEEEEEEEECCc--ccHHHHHHHHHHcCCEEEEE
Confidence            0000001    1133455555532  23356666666667777653

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=96.58  E-value=0.039  Score=54.95  Aligned_cols=203  Identities=14%  Similarity=0.174  Sum_probs=114.2

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC-CC
Q 021245           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI-TA  110 (315)
Q Consensus        34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~-~~  110 (315)
                      +.+.|++. .++.||.+++|...|++.|++|.-..... .+|..--.|.|...+-     +...+.+++ +...+.. ++
T Consensus       269 ~~~~i~i~~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~-----~~a~~~l~~-~~~el~~~~~  342 (600)
T 3l76_A          269 DQAKVALLRVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLL-----NTAEAVTSA-IAPALRSYPE  342 (600)
T ss_dssp             CCEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGH-----HHHHHHHHH-HGGGGSSSTT
T ss_pred             CEEEEEEeCCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHH-----HHHHHHHHH-HHHHhhcccc
Confidence            33445554 47999999999999999999996322222 4565555677754211     111222222 2222210 00


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChH
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQT  187 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~  187 (315)
                         ......+..  ..+...|.|.+.   .+||+.+++..+|+++|+||.-..  |.  ...-.|.|..          +
T Consensus       343 ---~~~~~~v~~--~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~is--tS--e~~Is~vI~~----------~  403 (600)
T 3l76_A          343 ---ADQEAEIIV--EKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TS--EVKVSCVIDQ----------R  403 (600)
T ss_dssp             ---CSSSSEEEE--ECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEE--EC--SSEEEEEEEG----------G
T ss_pred             ---ccCcceeEe--cCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEe--cC--CCEEEEEEcH----------H
Confidence               000011221  236788888876   799999999999999999996543  22  2334455554          1


Q ss_pred             HHHHHHHHHHHHHcCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCC
Q 021245          188 RLSLMEEQLKNILRGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKG  267 (315)
Q Consensus       188 ~~~~l~~~L~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~  267 (315)
                      ..++.-+.|++.+.....   ..            .+.        +...            ... .=+-|..+    .+
T Consensus       404 d~~~Av~aLh~~f~~~~t---~~------------~~~--------~~~~------------~~~-~v~Gia~~----~~  443 (600)
T 3l76_A          404 DADRAIAALSNAFGVTLS---PP------------KNQ--------TDTS------------HLP-AVRGVALD----QD  443 (600)
T ss_dssp             GHHHHHHHHHHHTTCCBC---CC------------CCC--------CC---------------CC-SCCEEEEE----CS
T ss_pred             HHHHHHHHHHHhhcccCC---Cc------------ccc--------cccc------------ccC-ceEEEEee----CC
Confidence            223344456555543211   00            000        0000            000 11335544    34


Q ss_pred             eeEEEEE-eCCCCchHHHHHhhhcCCceEEEEEEE
Q 021245          268 YSVVNVK-CRDRAKLMFDIVCTLTDMQYVVFHAAI  301 (315)
Q Consensus       268 ~tvieV~-a~DRpGLL~~I~~~l~~~~i~I~~AkI  301 (315)
                      .+.|.|. -+|+||+.++|-..|++.||+|-.-.-
T Consensus       444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q  478 (600)
T 3l76_A          444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQ  478 (600)
T ss_dssp             EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred             EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEe
Confidence            5666664 589999999999999999999954433

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=96.37  E-value=0.011  Score=49.04  Aligned_cols=106  Identities=13%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-e-CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCCCcc
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-D-GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITAGAK  113 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~-~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~~~~  113 (315)
                      ..|.|...|+||+|++++++|+..|+||.+..+.. . .|...-++.+.   +.    +...++|.+.|....+.     
T Consensus         5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~---~d----~~~leql~kQL~Kl~dV-----   72 (165)
T 2pc6_A            5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP----DEIVEQITKQLNKLIEV-----   72 (165)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC----HHHHHHHHHHHHHSTTE-----
T ss_pred             EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe---cc----HHHHHHHHHHhcCCCCE-----
Confidence            47889999999999999999999999999988874 3 47666566664   22    34677777777653321     


Q ss_pred             cCCceeeee-cC----CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEE
Q 021245          114 TWPSKQVGV-HS----VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       114 ~~~~~~v~~-~~----~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                          .++.. ..    ......+.|.+..  .--.++.+.....+.+|.+.
T Consensus        73 ----~~V~~~~~~~~v~rEl~liKv~~~~--~~r~~i~~~~~~fra~ivdv  117 (165)
T 2pc6_A           73 ----VKLIDLSSEGYVERELMLVKVRAVG--KDREEMKRLADIFRGNIIDV  117 (165)
T ss_dssp             ----EEEEEGGGSCEEEEEEEEEEEECCT--HHHHHHHHHHHHTTCEEEEE
T ss_pred             ----EEEEEcCCcceeeeEEEEEEEeCCc--ccHHHHHHHHHHcCCEEEEE
Confidence                11111 10    1133455555532  23356666666777777764

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=96.37  E-value=0.016  Score=49.13  Aligned_cols=64  Identities=16%  Similarity=0.364  Sum_probs=50.5

Q ss_pred             eEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEE-eeC-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHH
Q 021245          128 HTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVW-THN-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNI  199 (315)
Q Consensus       128 ~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~-t~~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~  199 (315)
                      ...|.|...|+||.|++|+++|+..|+||.+..+. |.+ +...-++.|.+ .       +..+++|.+.|.+.
T Consensus        29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g-~-------e~~ieqL~kQL~KL   94 (193)
T 2fgc_A           29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D-------DKTIEQIEKQAYKL   94 (193)
T ss_dssp             EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C-------TTHHHHHHHHHTTS
T ss_pred             EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEEC-C-------HHHHHHHHHHhcCc
Confidence            46889999999999999999999999999998886 444 55666777766 2       23567788877653

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=96.30  E-value=0.02  Score=47.07  Aligned_cols=35  Identities=23%  Similarity=0.291  Sum_probs=32.6

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH  164 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~  164 (315)
                      .|.|.|.||+|++++|+.+|+.+++||..+.+.+.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~   36 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI   36 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence            57899999999999999999999999999999665

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=96.21  E-value=0.016  Score=49.61  Aligned_cols=110  Identities=17%  Similarity=0.141  Sum_probs=68.6

Q ss_pred             CCeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEe---eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCC
Q 021245           33 PECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISS---DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHI  108 (315)
Q Consensus        33 ~~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t---~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~  108 (315)
                      ++...|+|. .+|+||+.++|.+.|++.|+||---....   .++..-..|.+...+         ..+..+.|..... 
T Consensus        33 ~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d---------~~~~~~~l~~~~~-  102 (200)
T 4go7_X           33 RSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDV---------GPAAVEKLDSLRN-  102 (200)
T ss_dssp             CSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGG---------HHHHHHHHHTTHH-
T ss_pred             CCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhh---------HHHHHHHHHHHHh-
Confidence            467788886 58999999999999999999998433322   234555567765321         1222222222110 


Q ss_pred             CCCcccCCceeeeecCCCceEEEEEE---eCCcccHHHHHHHHHHhCCceEEEE
Q 021245          109 TAGAKTWPSKQVGVHSVGDHTAIELI---GRDRPGLLSEISAVLANLRFNVAAA  159 (315)
Q Consensus       109 ~~~~~~~~~~~v~~~~~~~~t~i~i~---~~DrpgLl~~i~~~l~~~~l~I~~A  159 (315)
                          .... ..+..  ..+...|.|.   .+.+||+.+++.++|++.|+||.--
T Consensus       103 ----~~~~-~~v~~--~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mI  149 (200)
T 4go7_X          103 ----EIGF-SQLLY--DDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELI  149 (200)
T ss_dssp             ----HHCC-SEEEE--ECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEE
T ss_pred             ----hhce-eeEEE--ecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEE
Confidence                0000 01111  1244455554   5689999999999999999999754

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=96.13  E-value=0.011  Score=50.95  Aligned_cols=50  Identities=12%  Similarity=0.266  Sum_probs=36.5

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-----CeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-----RRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-----~~~~d~F~V~~  176 (315)
                      ....|.|.+.||||+|++|+++|+++++||...+..+..     +.+.-.+.+.+
T Consensus         3 ~~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d   57 (223)
T 1y7p_A            3 MLRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG   57 (223)
T ss_dssp             -CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECS
T ss_pred             ceEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECC
Confidence            346889999999999999999999999999999998853     34555555544

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=96.10  E-value=0.03  Score=46.97  Aligned_cols=110  Identities=10%  Similarity=0.106  Sum_probs=71.1

Q ss_pred             ceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEE-ee--CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          127 DHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVW-TH--NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       127 ~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~-t~--~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      +.+.|+|. .+|+||++++|...|+++|+||.--.-. +.  .+...-.|.|.. .      +.   ++..+.|.+ +..
T Consensus        15 ~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~-~------~~---~~a~~~L~~-~~~   83 (181)
T 3s1t_A           15 SEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-D------VG---PAAVEKLDS-LRN   83 (181)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEET-T------TH---HHHHHHHHH-THH
T ss_pred             CEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEeh-h------HH---HHHHHHHHH-HHH
Confidence            44555553 6799999999999999999999643221 12  244555677765 1      11   122222221 110


Q ss_pred             CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA  279 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp  279 (315)
                      +                       +                          ...+|.++    .+.+++.|.+.   ++|
T Consensus        84 e-----------------------l--------------------------~~~~v~~~----~~va~VsvVG~gm~~~~  110 (181)
T 3s1t_A           84 E-----------------------I--------------------------GFSQLLYD----DHIGKVSLIGAGMRSHP  110 (181)
T ss_dssp             H-----------------------H--------------------------CCSEEEEE----SCEEEEEEEEECCTTCH
T ss_pred             h-----------------------c--------------------------CcceEEEe----CCEEEEEEEecccccCc
Confidence            0                       0                          00235544    35788888876   899


Q ss_pred             chHHHHHhhhcCCceEEEEEE
Q 021245          280 KLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       280 GLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      |+.+++.++|++.||+|.+..
T Consensus       111 Gvaa~~f~aLa~~~InI~~Is  131 (181)
T 3s1t_A          111 GVTATFCEALAAVGVNIELIS  131 (181)
T ss_dssp             HHHHHHHHHHHHTTCCCCEEE
T ss_pred             hHHHHHHHHHHHCCCcEEEEE
Confidence            999999999999999998865

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=96.02  E-value=0.2  Score=47.49  Aligned_cols=107  Identities=21%  Similarity=0.299  Sum_probs=71.6

Q ss_pred             CeEEEEEE-ecCCccHHHHHHHHHHhCCceEEEEEEEee---CCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCC
Q 021245           34 ECTVVKVD-SVNKPGILLEVVQVLSDLDLIITKAYISSD---GGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHIT  109 (315)
Q Consensus        34 ~~~~v~V~-~~DrpGLl~~i~~~L~~~glnI~~A~I~t~---~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~  109 (315)
                      +.+.|+|. .+|+||.++++...|++.|+||.--...+.   +|...-.|.|...+.     ++..+.|++ +...+.. 
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~-----~~a~~~l~~-~~~~~~~-  335 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDG-----RRAMEILKK-LQVQGNW-  335 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTH-----HHHHHHHHH-HHTTTTC-
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhH-----HHHHHHHHH-HHHHcCC-
Confidence            44567777 589999999999999999999985544332   454445677763211     122333433 2222211 


Q ss_pred             CCcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEE
Q 021245          110 AGAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVA  157 (315)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~  157 (315)
                            .++.+    ..+...+.|.+.   ++||.++++..+|++.|+||.
T Consensus       336 ------~~v~~----~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~  376 (421)
T 3ab4_A          336 ------TNVLY----DDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIE  376 (421)
T ss_dssp             ------SEEEE----ECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCC
T ss_pred             ------ceEEE----eCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEE
Confidence                  01122    236677888875   899999999999999999998

>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12

Probab=95.98  E-value=0.014  Score=50.26  Aligned_cols=48  Identities=19%  Similarity=0.131  Sum_probs=35.8

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEee-----CCEEEEEEEEE
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSD-----GGWFMDVFHVI   82 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~-----~g~~~d~f~v~   82 (315)
                      ...|.|.+.||||+|++|+.+|++++.||...+.++.     +|.+.-.+.+.
T Consensus         4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~   56 (223)
T 1y7p_A            4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIE   56 (223)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEEC
T ss_pred             eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEEC
Confidence            4578899999999999999999999999999999874     56665444443

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=95.54  E-value=0.16  Score=48.12  Aligned_cols=109  Identities=13%  Similarity=0.165  Sum_probs=72.3

Q ss_pred             ceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcC
Q 021245          127 DHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRG  202 (315)
Q Consensus       127 ~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~  202 (315)
                      +.+.|+|. .+|+||.+++|.+.|+++|+||.--...|.   .+...-.|.|.. .      +.   ++..+.|.+ +..
T Consensus       263 ~~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~-~------~~---~~a~~~l~~-~~~  331 (421)
T 3ab4_A          263 SEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPR-S------DG---RRAMEILKK-LQV  331 (421)
T ss_dssp             SEEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEET-T------TH---HHHHHHHHH-HHT
T ss_pred             CEEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEec-h------hH---HHHHHHHHH-HHH
Confidence            45567777 689999999999999999999885543333   233444566654 1      12   122233322 211


Q ss_pred             CCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCC
Q 021245          203 CDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRA  279 (315)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRp  279 (315)
                      +..                                                . ..|.++    .+.+++.|.+.   ++|
T Consensus       332 ~~~------------------------------------------------~-~~v~~~----~~~a~vsvVG~gm~~~~  358 (421)
T 3ab4_A          332 QGN------------------------------------------------W-TNVLYD----DQVGKVSLVGAGMKSHP  358 (421)
T ss_dssp             TTT------------------------------------------------C-SEEEEE----CCEEEEEEECGGGTSCT
T ss_pred             HcC------------------------------------------------C-ceEEEe----CCeEEEEEEccCcccCc
Confidence            111                                                0 235554    46788999986   899


Q ss_pred             chHHHHHhhhcCCceEEEEE
Q 021245          280 KLMFDIVCTLTDMQYVVFHA  299 (315)
Q Consensus       280 GLL~~I~~~l~~~~i~I~~A  299 (315)
                      |.+.++..+|.+.||+|..-
T Consensus       359 Gv~a~~f~aL~~~~InI~~i  378 (421)
T 3ab4_A          359 GVTAEFMEALRDVNVNIELI  378 (421)
T ss_dssp             THHHHHHHHHHHTTCCCCEE
T ss_pred             cHHHHHHHHHHHCCCCEEEE
Confidence            99999999999999999844

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=95.04  E-value=0.07  Score=45.54  Aligned_cols=112  Identities=9%  Similarity=0.077  Sum_probs=69.7

Q ss_pred             CCceEEEEEE-eCCcccHHHHHHHHHHhCCceEEEEEEEee---CCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHH
Q 021245          125 VGDHTAIELI-GRDRPGLLSEISAVLANLRFNVAAAEVWTH---NRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNIL  200 (315)
Q Consensus       125 ~~~~t~i~i~-~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~---~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L  200 (315)
                      ..+...|+|. .+|+||+.++|.+.|+++|+||.----...   .+.....|.+.. .         ..++..+.|.+..
T Consensus        32 ~~~~a~Iti~g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~-~---------d~~~~~~~l~~~~  101 (200)
T 4go7_X           32 DRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR-D---------VGPAAVEKLDSLR  101 (200)
T ss_dssp             ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG-G---------GHHHHHHHHHTTH
T ss_pred             cCCEEEEEEecCCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch-h---------hHHHHHHHHHHHH
Confidence            3466777776 589999999999999999999864321111   234444566654 1         1122222221110


Q ss_pred             cCCCCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEe---CC
Q 021245          201 RGCDDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKC---RD  277 (315)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a---~D  277 (315)
                      .                        .+                          ....|.++.    +.+.+.|.+   +.
T Consensus       102 ~------------------------~~--------------------------~~~~v~~~~----~iakVSvVG~GM~~  127 (200)
T 4go7_X          102 N------------------------EI--------------------------GFSQLLYDD----HIGKVSLIGAGMRS  127 (200)
T ss_dssp             H------------------------HH--------------------------CCSEEEEEC----CEEEEEEEEESCTT
T ss_pred             h------------------------hh--------------------------ceeeEEEec----Ceeeeeeecccccc
Confidence            0                        01                          002344443    455666664   58


Q ss_pred             CCchHHHHHhhhcCCceEEEEEE
Q 021245          278 RAKLMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       278 RpGLL~~I~~~l~~~~i~I~~Ak  300 (315)
                      +||+..++-++|++.||+|..-.
T Consensus       128 ~~GVaak~F~aLa~~~INI~mIs  150 (200)
T 4go7_X          128 HPGVTATFCEALAAVGVNIELIS  150 (200)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCEEE
T ss_pred             CCCcHHHHHHHHHHCCCCEEEEE
Confidence            99999999999999999998764

>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}

Probab=94.90  E-value=0.052  Score=44.46  Aligned_cols=37  Identities=16%  Similarity=0.151  Sum_probs=33.4

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW   74 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~   74 (315)
                      .|.|.|.||+|++++|+.+|+..++||....+.+. |.
T Consensus         2 ~~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g~   38 (190)
T 2jhe_A            2 RLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-GR   38 (190)
T ss_dssp             EEEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-TE
T ss_pred             EEEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-CE
Confidence            57899999999999999999999999999988666 43

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=93.53  E-value=0.4  Score=45.84  Aligned_cols=120  Identities=16%  Similarity=0.237  Sum_probs=73.8

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +.+.|+|.+   ++.||.+++|...|++.|++|.-  |.+....  -+|.|...+-.. ....+.+.+++.+..      
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~--i~~~~~~--is~~V~~~d~~~-~~~~~~~el~~~~~~------  365 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEH--MPSGVDS--VSLVIEDCKLDG-KCDKIIEEIKKQCNP------  365 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEE--BCEETTE--EEEEEEHHHHTT-THHHHHHHHHHHSCC------
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEE--EecCCCE--EEEEEecchHHH-HHHHHHHHHHHhcCC------
Confidence            344577775   68999999999999999999973  3332221  347775432111 011233344433321      


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                           -++.+.    .+...|.|.|.   .+||+.+++.++|++.|+||.-.   +.| ...--.|.|..
T Consensus       366 -----~~v~v~----~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mI---sqgtSei~Is~vV~~  423 (446)
T 3tvi_A          366 -----DSIEIH----PNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMI---DQGSSEINVIVGVET  423 (446)
T ss_dssp             -----SEEEEE----EEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEE---EECSCTTEEEEEEEG
T ss_pred             -----CcEEEe----CCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEE---EecCCCceEEEEEcH
Confidence                 012222    26678888875   58999999999999999998643   233 23334455554

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=93.11  E-value=0.25  Score=46.70  Aligned_cols=50  Identities=22%  Similarity=0.318  Sum_probs=44.7

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      +...+.+.-.|+||.+..|+.+|+++|+||......+.|+.+..++.+..
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD~  379 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEA  379 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEEC
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcCC
Confidence            45678899999999999999999999999999999997888888887765

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=92.25  E-value=0.56  Score=45.77  Aligned_cols=52  Identities=21%  Similarity=0.307  Sum_probs=44.0

Q ss_pred             CCceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEEEe
Q 021245          125 VGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYVND  176 (315)
Q Consensus       125 ~~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V~~  176 (315)
                      .+.+..+.+.-+|+||.+..|+..|.++|+||.+.++...  ++.+...+.+.+
T Consensus       451 ~~~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~  504 (529)
T 1ygy_A          451 RAQGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ  504 (529)
T ss_dssp             ESCSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS
T ss_pred             cCCccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC
Confidence            3456788899999999999999999999999999999864  466777777755

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=91.27  E-value=6.6  Score=38.04  Aligned_cols=122  Identities=16%  Similarity=0.192  Sum_probs=76.3

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCC-ChhHHHHHHHHHCCCCCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKIT-DGKTIDYIEKALGPKGHIT  109 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~-~~~~~~~l~~~L~~~~~~~  109 (315)
                      +.+.|+|.+   .+.||.++++..+|++.|++|.-.  .+...-  -+|.|...+..... ..+..+.+.+.|....   
T Consensus       340 ~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I--~sse~s--is~~v~~~~~~~~~~~~~~l~~~~~el~~~~---  412 (510)
T 2cdq_A          340 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVV--ATSEVS--ISLTLDPSKLWSRELIQQELDHVVEELEKIA---  412 (510)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEE--EEETTE--EEEEECCGGGSSSCCCHHHHHHHHHHHTTTS---
T ss_pred             CeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEE--EeCCCe--EEEEEechHhhhhhHHHHHHHHHHHHhCCCC---
Confidence            456677875   689999999999999999999844  442221  24666432211110 1234455555554311   


Q ss_pred             CCcccCCceeeeecCCCceEEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          110 AGAKTWPSKQVGVHSVGDHTAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       110 ~~~~~~~~~~v~~~~~~~~t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                             ++.+.    .+...|.|.+.  ..||+.+++..+|++.|+||.-.   +.| ...--.|.|..
T Consensus       413 -------~v~~~----~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mI---sqGsSei~Is~vV~~  468 (510)
T 2cdq_A          413 -------VVNLL----KGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMI---SQGASKVNISFIVNE  468 (510)
T ss_dssp             -------EEEEE----EEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEE---EECTTCSEEEEEEEH
T ss_pred             -------eEEEe----CCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEE---EecCCcceEEEEEeH
Confidence                   22222    25567777776  88899999999999999998642   334 33444566654

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=90.26  E-value=0.92  Score=42.74  Aligned_cols=49  Identities=14%  Similarity=0.231  Sum_probs=42.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      +...|.+.-.|+||.+..|..+|.+.|+||......+.++.++-++-+.
T Consensus       330 ~~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r~g~~A~~vidvD  378 (404)
T 1sc6_A          330 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIE  378 (404)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEE
T ss_pred             CcceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccCCCCEEEEEEEcC
Confidence            4567889999999999999999999999999999999888876555443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=89.95  E-value=0.49  Score=44.81  Aligned_cols=50  Identities=26%  Similarity=0.424  Sum_probs=42.4

Q ss_pred             CCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCC
Q 021245           33 PECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQ   85 (315)
Q Consensus        33 ~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~   85 (315)
                      .+...|++.=+|.||.+.+|..+|++.|+||.+-...|.+++.   |.+.|-+
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~---y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVG---YLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCE---EEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceE---EEEEEec
Confidence            3678999999999999999999999999999988878888766   4555544

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=89.40  E-value=1.1  Score=36.15  Aligned_cols=112  Identities=17%  Similarity=0.199  Sum_probs=67.9

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCCCCCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPKGHITA  110 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~~~~~~  110 (315)
                      +...|+|.+   ++.||..+++...|++.|+||.  -|.+...  --+|.+.+.+        ...++.+.|....    
T Consensus        17 ~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd--~I~~s~~--~Isf~v~~~~--------~~~~il~~l~~~~----   80 (157)
T 3mah_A           17 GITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVD--MVATSEV--GVSLTIDNDK--------NLPDIVRALSDIG----   80 (157)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCS--CEECCSS--EEEEEESCCT--------THHHHHHHHTTTE----
T ss_pred             CEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEE--EEEecCC--EEEEEECChH--------HHHHHHHHHhccC----
Confidence            667888874   4789999999999999999997  3344222  1346664321        1233333443310    


Q ss_pred             CcccCCceeeeecCCCceEEEEEEeC---CcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          111 GAKTWPSKQVGVHSVGDHTAIELIGR---DRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       111 ~~~~~~~~~v~~~~~~~~t~i~i~~~---DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                            .+.+.    .+...|.+.|.   ++||+.+++..+|+  |+||.-.   +.+ ....-.|.|..
T Consensus        81 ------~v~~~----~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~i---sqg~Se~~is~vv~~  135 (157)
T 3mah_A           81 ------DVTVD----KDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMI---SYGGSNYNVSVLVKA  135 (157)
T ss_dssp             ------EEEEE----EEEEEEEEEC------CCHHHHHHHTTT--TSCCSEE---EECSSSSCEEEEEEG
T ss_pred             ------eEEEe----CCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEE---eeCCCCCEEEEEEcH
Confidence                  11222    25577777764   68999999999999  8887642   223 23334555554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=88.27  E-value=1.5  Score=41.54  Aligned_cols=50  Identities=20%  Similarity=0.270  Sum_probs=43.5

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEE
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVN  175 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~  175 (315)
                      .+...|.+.-+|.||.+.+|..+|+++|+||..-...|.++.+..+.-|.
T Consensus       341 ~~~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~~~y~~~d~~  390 (416)
T 3k5p_A          341 PTGTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGEVGYLVMEAD  390 (416)
T ss_dssp             SSSEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEEC
T ss_pred             CCceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCceEEEEEEec
Confidence            35689999999999999999999999999999988888887776666554

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=88.23  E-value=1.2  Score=42.44  Aligned_cols=107  Identities=12%  Similarity=0.133  Sum_probs=69.5

Q ss_pred             ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHHHHcCC
Q 021245          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKNILRGC  203 (315)
Q Consensus       127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~~L~~~  203 (315)
                      +.+.|+|.+   .+.||++++|..+|+++|++|.-.  .+ + ...-.|.|.. .   .+.  ....++.+.|...+.  
T Consensus       297 ~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i--~~-~-~~~is~~V~~-~---d~~--~~~~~~~~el~~~~~--  364 (446)
T 3tvi_A          297 NFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHM--PS-G-VDSVSLVIED-C---KLD--GKCDKIIEEIKKQCN--  364 (446)
T ss_dssp             EEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEB--CE-E-TTEEEEEEEH-H---HHT--TTHHHHHHHHHHHSC--
T ss_pred             CEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEE--ec-C-CCEEEEEEec-c---hHH--HHHHHHHHHHHHhcC--
Confidence            456677775   689999999999999999999743  22 1 2233466654 1   110  011222233322111  


Q ss_pred             CCCccccccccccccccccchhhhHhhhhccccccCCCCCCCCcCCCCCCCCCEEEEeecCCCCeeEEEEEeC---CCCc
Q 021245          204 DDEDSEKVARTSFSMGFTHVDRRLHQMFFADRDYEGGGVTTADQVDHTPSFKPEITVERLEDKGYSVVNVKCR---DRAK  280 (315)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~i~~~~~~~~tvieV~a~---DRpG  280 (315)
                                                                         ...|.++.    +.+++.|.+.   .+||
T Consensus       365 ---------------------------------------------------~~~v~v~~----~vA~VSvVG~gM~~~~G  389 (446)
T 3tvi_A          365 ---------------------------------------------------PDSIEIHP----NMALVATVGTGMAKTKG  389 (446)
T ss_dssp             ---------------------------------------------------CSEEEEEE----EEEEEEEECGGGSSCTT
T ss_pred             ---------------------------------------------------CCcEEEeC----CeEEEEEECCCccCChh
Confidence                                                               12355543    5788988876   5999


Q ss_pred             hHHHHHhhhcCCceEEEEEE
Q 021245          281 LMFDIVCTLTDMQYVVFHAA  300 (315)
Q Consensus       281 LL~~I~~~l~~~~i~I~~Ak  300 (315)
                      +..++-++|.+.||+|....
T Consensus       390 vaarif~aLa~~~InI~mIs  409 (446)
T 3tvi_A          390 IANKIFTALSKENVNIRMID  409 (446)
T ss_dssp             HHHHHHHHHHHTTCCEEEEE
T ss_pred             HHHHHHHHHHHCCCCEEEEE
Confidence            99999999999999998754

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=87.71  E-value=1.7  Score=42.32  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=47.0

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHH
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEK  100 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~  100 (315)
                      ....+.+.-+|+||.+.+++..|.+.|+||...++..  .+|.++-.+.+.+    .++ ++..++|++
T Consensus       453 ~~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~----~~~-~~~l~~l~~  516 (529)
T 1ygy_A          453 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQ----DVP-DDVRTAIAA  516 (529)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESS----CCC-HHHHHHHHH
T ss_pred             CccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECC----CCC-HHHHHHHhc
Confidence            4567788899999999999999999999999999985  4676764555532    222 446666664

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=86.86  E-value=1.9  Score=38.63  Aligned_cols=50  Identities=16%  Similarity=0.181  Sum_probs=39.0

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~  176 (315)
                      ..|.|.+..+|+||-|+++.+.|+.+|+|+..-+..-..+ ...=.|+|.-
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~  249 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADF  249 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEE
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEE
Confidence            3466767778999999999999999999998766655443 4556788865

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=86.26  E-value=5.5  Score=36.33  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=37.1

Q ss_pred             EEEEEEeC--CcccHHHHHHHHHHhCCceEEEEEEEeeCCeE-EEEEEEEeCCCCCc
Q 021245          129 TAIELIGR--DRPGLLSEISAVLANLRFNVAAAEVWTHNRRI-ACVLYVNDDTTCRA  182 (315)
Q Consensus       129 t~i~i~~~--DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~-~d~F~V~~~~~g~~  182 (315)
                      +.+.+..+  |+||-|+++.+.|+.+|+|+..-+..-..+.. .=.|+|.-  .|..
T Consensus       207 ts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~--eg~~  261 (329)
T 3luy_A          207 ESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTL--DAAP  261 (329)
T ss_dssp             EEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEE--SSCT
T ss_pred             eEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEE--eCCc
Confidence            44444444  79999999999999999999877666555544 44677754  4543

>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}

Probab=85.24  E-value=2.4  Score=38.50  Aligned_cols=50  Identities=22%  Similarity=0.238  Sum_probs=38.0

Q ss_pred             ceEEEEEEeC-CcccHHHHHHHHHHhCCceEEEEEEEeeCC-eEEEEEEEEe
Q 021245          127 DHTAIELIGR-DRPGLLSEISAVLANLRFNVAAAEVWTHNR-RIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~~-DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~-~~~d~F~V~~  176 (315)
                      ..|.|.+..+ |+||-|+++.+.|+.+|+|+..-+..-..+ ...=.|+|.-
T Consensus       200 ~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  251 (313)
T 3mwb_A          200 DKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA  251 (313)
T ss_dssp             EEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred             CeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence            4577777775 999999999999999999998766654433 3344677754

>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}

Probab=83.83  E-value=9.1  Score=34.90  Aligned_cols=63  Identities=19%  Similarity=0.137  Sum_probs=38.9

Q ss_pred             eEEEEEEec--CCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHHH
Q 021245           35 CTVVKVDSV--NKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYIE   99 (315)
Q Consensus        35 ~~~v~V~~~--DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~   99 (315)
                      .+.+.+..+  |+||-|+++.+.|+..|+|...-.-.. .++..--.|+| |-+|. ..++...+.|+
T Consensus       206 kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~Ffi-D~eg~-~~d~~v~~AL~  271 (329)
T 3luy_A          206 YESVLTLIPLVTGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIV-TLDAA-PWEERFRDALV  271 (329)
T ss_dssp             EEEEEEEECSCCSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEE-EESSC-TTSHHHHHHHH
T ss_pred             ceEEEEEecCCCCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEE-EEeCC-cCCHHHHHHHH
Confidence            344444444  799999999999999999999443332 33333334665 45665 33444444443

>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}

Probab=81.72  E-value=3.3  Score=37.00  Aligned_cols=63  Identities=16%  Similarity=0.103  Sum_probs=40.2

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEEEEEEEEEcCCCCCCCChhHHHHH
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWFMDVFHVIDQQGKKITDGKTIDYI   98 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l   98 (315)
                      ..+.|.+..+|+||-|+++.+.|+..|+|...-.-.. .++..--.|+|. -+|. ..++...+.|
T Consensus       199 ~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD-~eg~-~~d~~v~~aL  262 (283)
T 2qmx_A          199 QKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYAD-FIGH-REDQNVHNAL  262 (283)
T ss_dssp             EEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEE-EESC-TTSHHHHHHH
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEE-EecC-CCcHHHHHHH
Confidence            3566777778999999999999999999999433332 332222246664 4454 3334333333

>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3

Probab=80.48  E-value=8.6  Score=33.96  Aligned_cols=50  Identities=20%  Similarity=0.320  Sum_probs=38.8

Q ss_pred             ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      ..|.|.+..   +|+||-|+++.+.|+.+|+|+..-+..-.. +...=.|+|.-
T Consensus       185 ~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~  238 (267)
T 2qmw_A          185 NATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA  238 (267)
T ss_dssp             SCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             CeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEE
Confidence            456666666   899999999999999999999876665544 33556788876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1y7pa2	77	d.58.18.12 (A:2-78) Hypothetical protein AF1403, N	3e-05
d1u8sa1	86	d.58.18.5 (A:2-87) putative transcriptional repres	2e-04

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 77

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 39.4 bits (92), Expect = 3e-05
 Identities = 7/53 (13%), Positives = 23/53 (43%), Gaps = 3/53 (5%)

Query: 129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIA---CVLYVNDDT 178
             + +I  ++ G+L +++ ++A    N+  A+ +           ++Y   + 
Sbjct: 2   RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEG 54

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Length = 86

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

 Score = 37.1 bits (86), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 24/51 (47%)

Query: 124 SVGDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYV 174
           S+  H  I  +G DRPG+ +E+  ++     N+  + +    +    ++ +
Sbjct: 1   SLTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLI 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.75
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	98.69
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.64
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	98.56
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	98.14
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	97.97
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.85
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	97.72
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.71
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.63
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.58
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	97.56
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	97.48
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	97.48
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	97.31
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	97.31
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	97.28
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	97.2
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	96.59
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	96.53
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	96.39
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	96.38
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	94.1
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	93.61
d1phza1	97	Phenylalanine hydroxylase N-terminal domain {Rat (	90.45
d2qmwa2	80	Prephenate dehydratase C-terminal domain {Staphylo	89.95
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	86.1
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	85.74
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	84.78
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	83.15
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	82.47
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	81.53

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.75  E-value=4.2e-08  Score=71.45  Aligned_cols=65  Identities=17%  Similarity=0.405  Sum_probs=55.9

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+++|++.|+||||++++++++|+++|+||.+++..+.++...-.+.|.. +       +..++++++.|..
T Consensus         3 ~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~-~-------~~~~~~l~~~L~~   67 (86)
T d1u8sa1           3 TQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG-S-------PSNITRVETTLPL   67 (86)
T ss_dssp             CEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-C-------HHHHHHHHHHHHH
T ss_pred             ccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEc-C-------cccHHHHHHHHHH
Confidence            367899999999999999999999999999999999999998888888876 2       2356778887744

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.69  E-value=7.7e-08  Score=69.98  Aligned_cols=51  Identities=22%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CCCeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           32 CPECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        32 ~~~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ...+.+|++.|+||||++++++++|+++|+||.+++.++.++.+.-.+.|.
T Consensus         2 m~~~~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~   52 (86)
T d1u8sa1           2 LTQHLVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLIS   52 (86)
T ss_dssp             CCEEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CccEEEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEE
Confidence            346789999999999999999999999999999999999999888777765

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.64  E-value=1.2e-07  Score=68.39  Aligned_cols=49  Identities=20%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQ   84 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~   84 (315)
                      ..|++.|+||||+++.++++|+++|+||.+.+.++.++.+.-.+.+..+
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~   51 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSD   51 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEe
Confidence            5799999999999999999999999999999999988888766666644

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.56  E-value=3e-07  Score=66.21  Aligned_cols=63  Identities=14%  Similarity=0.357  Sum_probs=50.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ++|++.|+||||++++++++|+++|+||.+.+-.+.++...-.+.+.. +.+.      ..+.|+++|..
T Consensus         3 ~vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~-~~~~------~~~~l~~~l~~   65 (83)
T d1zpva1           3 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSS-DEKQ------DFTYLRNEFEA   65 (83)
T ss_dssp             EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE-SSCC------CHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEE-ecCC------CHHHHHHHHHH
Confidence            679999999999999999999999999999999888887777777776 3221      13566777744

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=98.14  E-value=4.4e-06  Score=61.21  Aligned_cols=39  Identities=15%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN  165 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~  165 (315)
                      ....|.|.|+|||||+++|+++|+++|+||.+.+-.|..
T Consensus         5 ~tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~   43 (93)
T d1u8sa2           5 YTVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS   43 (93)
T ss_dssp             EEEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred             eEEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccccc
Confidence            345788999999999999999999999999999887753

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=97.97  E-value=2.9e-05  Score=56.70  Aligned_cols=36  Identities=17%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS   70 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t   70 (315)
                      ...|.|.|+|||||+++|+++|+++|+||.+.+-.+
T Consensus         6 tv~v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~   41 (93)
T d1u8sa2           6 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQT   41 (93)
T ss_dssp             EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             EEEEEEEECCCCCHHHHHHHHHHHcCCCchhhhccc
Confidence            457889999999999999999999999999888765

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.85  E-value=3.5e-05  Score=53.32  Aligned_cols=47  Identities=13%  Similarity=0.202  Sum_probs=42.8

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      +|.|..+|+||-|++++++|+++|+||.+..++..++...-.|.+.+
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47788999999999999999999999999999998888888888765

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.72  E-value=3.6e-05  Score=53.26  Aligned_cols=47  Identities=26%  Similarity=0.281  Sum_probs=41.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~   83 (315)
                      +|.|..+|+||-|++++++|.+.|+||+....+..+++.+-.|.+.|
T Consensus         1 ViaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd   47 (71)
T d2f06a1           1 VVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN   47 (71)
T ss_dssp             EEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred             CEEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECC
Confidence            47788999999999999999999999999999987888877777743

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.71  E-value=0.00014  Score=51.07  Aligned_cols=48  Identities=23%  Similarity=0.321  Sum_probs=40.6

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee--CCeEEEEEEE
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH--NRRIACVLYV  174 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~--~~~~~d~F~V  174 (315)
                      ....+.+.-.|+||++++|+++|+++|+||...++.+.  ++.+..++.+
T Consensus         2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v   51 (78)
T d1ygya3           2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL   51 (78)
T ss_dssp             CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE
T ss_pred             CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc
Confidence            34678889999999999999999999999999999875  4566666665

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.63  E-value=0.00016  Score=49.78  Aligned_cols=47  Identities=21%  Similarity=0.228  Sum_probs=39.7

Q ss_pred             EEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          130 AIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       130 ~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      ++.|...|+||.|++++++|+++|+||.+..+....+...-.+.|.+
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~   51 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD   51 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence            58899999999999999999999999999988877666655565543

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.58  E-value=7.9e-05  Score=52.33  Aligned_cols=48  Identities=15%  Similarity=0.337  Sum_probs=35.4

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-Ce--EEEEEEEEe
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RR--IACVLYVND  176 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~--~~d~F~V~~  176 (315)
                      ..|.|.+.||||+|++|+.+++++|+||.+....+.. |.  ..-++++..
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            4578999999999999999999999999999988743 43  445666655

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.56  E-value=7.3e-05  Score=51.50  Aligned_cols=46  Identities=22%  Similarity=0.189  Sum_probs=38.6

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEE
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVI   82 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~   82 (315)
                      ++.|+..|+||.|++++++|++.|+||.+..+....+..+-.+.+.
T Consensus         5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~   50 (70)
T d2f06a2           5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVS   50 (70)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEES
T ss_pred             EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEEC
Confidence            6899999999999999999999999999988876555555556553

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.48  E-value=2.9e-05  Score=54.69  Aligned_cols=48  Identities=17%  Similarity=0.085  Sum_probs=34.1

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe-eCCEE--EEEEEEEc
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS-DGGWF--MDVFHVID   83 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t-~~g~~--~d~f~v~~   83 (315)
                      ..|.|.+.||||+|++|+.++++.|.||...+..+ .+|.+  .-.+.+.+
T Consensus         2 ~~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~   52 (77)
T d1y7pa2           2 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEI   52 (77)
T ss_dssp             EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEE
T ss_pred             eeEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEc
Confidence            46889999999999999999999999999999887 44432  22455544

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.48  E-value=0.00049  Score=48.17  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=46.4

Q ss_pred             eEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHH
Q 021245           35 CTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKA  101 (315)
Q Consensus        35 ~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~  101 (315)
                      ...+.+.-.|+||.+++|+.+|++.|+||...++.+  .+|.++-.+.+ |  +. ++ ++..++|++.
T Consensus         3 G~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~v-D--~~-~~-~~vl~~I~~~   66 (78)
T d1ygya3           3 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRL-D--QD-VP-DDVRTAIAAA   66 (78)
T ss_dssp             SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEE-S--SC-CC-HHHHHHHHHH
T ss_pred             ceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEc-C--CC-cc-HHHHHHHHcC
Confidence            456778899999999999999999999999999976  56766544444 2  22 22 4566676653

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=97.31  E-value=0.0005  Score=47.93  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=49.0

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEee-C-CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTH-N-RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~-~-~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+.+...|+||+|++|++.|+..|+||.+..+.-. . +....++.+.+    .    ++.++++.+.|.+
T Consensus         3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~----~----~~~i~qi~kQL~K   66 (77)
T d2pc6a2           3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNG----P----DEIVEQITKQLNK   66 (77)
T ss_dssp             EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEE----C----HHHHHHHHHHHHH
T ss_pred             EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEEC----C----HHHHHHHHHHHhC
Confidence            467899999999999999999999999999998754 3 55666777765    1    3466777777754

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00079  Score=47.02  Aligned_cols=61  Identities=16%  Similarity=0.351  Sum_probs=46.8

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLK  197 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~  197 (315)
                      ..+.+...|+||+|++|++.|+..|+||.+..+....  +....++.+.. .       ++.++++.+.|.
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g-~-------~~~i~qi~kQl~   66 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKG-D-------DKTIEQIEKQAY   66 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEE-C-------TTHHHHHHHHHT
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEc-C-------HHHHHHHHHHHh
Confidence            5788999999999999999999999999999887653  44555666655 1       234566666663

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.0015  Score=46.25  Aligned_cols=41  Identities=24%  Similarity=0.384  Sum_probs=35.9

Q ss_pred             ceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCe
Q 021245          127 DHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR  167 (315)
Q Consensus       127 ~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~  167 (315)
                      ....+.+.-+|+||.+++|+++|+++|+||.+....+.++.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~   50 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQM   50 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCC
Confidence            44678888999999999999999999999999988887643

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=97.20  E-value=0.00086  Score=46.58  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=46.3

Q ss_pred             EEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC--CeEEEEEEEEeCCCCCcCCChHHHHHHHHHHHH
Q 021245          129 TAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN--RRIACVLYVNDDTTCRAVGDQTRLSLMEEQLKN  198 (315)
Q Consensus       129 t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~--~~~~d~F~V~~~~~g~~~~~~~~~~~l~~~L~~  198 (315)
                      ..+.++..|+||+|+++++.|+..|+||.+..+.-..  +....++.+..        +++.++++.+.|.+
T Consensus         2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~--------~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVG--------DEKVLEQIEKQLHK   65 (76)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEES--------CHHHHHHHHHHHHH
T ss_pred             EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEEC--------CHHHHHHHHHHHhC
Confidence            3578899999999999999999999999999887443  34444544433        13466777777754

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=96.59  E-value=0.014  Score=40.36  Aligned_cols=63  Identities=27%  Similarity=0.314  Sum_probs=45.2

Q ss_pred             EEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEe--eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           36 TVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISS--DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        36 ~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t--~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      ..|.++..|+||+|+++++.|+..|+||.+-.+..  ..|..--++.+.   |.    +...++|.+.|...
T Consensus         4 ~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~---g~----~~~i~qi~kQl~Kl   68 (78)
T d2fgca2           4 HLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK---GD----DKTIEQIEKQAYKL   68 (78)
T ss_dssp             EEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE---EC----TTHHHHHHHHHTTS
T ss_pred             EEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEE---cC----HHHHHHHHHHHhCC
Confidence            46889999999999999999999999999888764  445544333332   22    13456676666553

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=96.53  E-value=0.007  Score=42.55  Aligned_cols=41  Identities=15%  Similarity=0.301  Sum_probs=35.5

Q ss_pred             CeEEEEEEecCCccHHHHHHHHHHhCCceEEEEEEEeeCCE
Q 021245           34 ECTVVKVDSVNKPGILLEVVQVLSDLDLIITKAYISSDGGW   74 (315)
Q Consensus        34 ~~~~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~   74 (315)
                      +...+++.-.|+||.+++|+++|++.|+||.+....+.++.
T Consensus        10 ~~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~   50 (84)
T d1sc6a3          10 GGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQM   50 (84)
T ss_dssp             SSEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSE
T ss_pred             CCeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCC
Confidence            44678888999999999999999999999999888775543

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0037  Score=43.25  Aligned_cols=60  Identities=23%  Similarity=0.292  Sum_probs=42.1

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~  103 (315)
                      .+.++..|+||.|+++++.|+..|+||.+-.+. | ..|..-  |.+.- .|.    ++..++|.+.|.
T Consensus         3 tlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR--~tivv-~~~----~~~i~qi~kQL~   64 (76)
T d2f1fa1           3 ILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSR--MTIQT-VGD----EKVLEQIEKQLH   64 (76)
T ss_dssp             EEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEE--EEEEE-ESC----HHHHHHHHHHHH
T ss_pred             EEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeE--EEEEE-ECC----HHHHHHHHHHHh
Confidence            578899999999999999999999999988886 3 344443  33332 122    234555655554

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=96.38  E-value=0.0078  Score=41.61  Aligned_cols=60  Identities=18%  Similarity=0.209  Sum_probs=43.5

Q ss_pred             EEEEEecCCccHHHHHHHHHHhCCceEEEEEEE-e-eCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHC
Q 021245           37 VVKVDSVNKPGILLEVVQVLSDLDLIITKAYIS-S-DGGWFMDVFHVIDQQGKKITDGKTIDYIEKALG  103 (315)
Q Consensus        37 ~v~V~~~DrpGLl~~i~~~L~~~glnI~~A~I~-t-~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~  103 (315)
                      .|.+...|+||.|+++++.|+..|+||.+-.+. | ..|..--++.+.   |.    ++..++|.+.|.
T Consensus         4 tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~---~~----~~~i~qi~kQL~   65 (77)
T d2pc6a2           4 IISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN---GP----DEIVEQITKQLN   65 (77)
T ss_dssp             EEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE---EC----HHHHHHHHHHHH
T ss_pred             EEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEE---CC----HHHHHHHHHHHh
Confidence            578999999999999999999999999988886 4 456654444443   21    234555555554

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=94.10  E-value=0.14  Score=35.26  Aligned_cols=46  Identities=20%  Similarity=0.265  Sum_probs=34.8

Q ss_pred             EEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeCCe-EEEEEEEEe
Q 021245          131 IELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHNRR-IACVLYVND  176 (315)
Q Consensus       131 i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~-~~d~F~V~~  176 (315)
                      +.+...|+||-|+++.+.|+++|+|+..-...-..+. ..=.|+|.-
T Consensus         5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~   51 (80)
T d2qmwa2           5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQA   51 (80)
T ss_dssp             EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEE
T ss_pred             EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEE
Confidence            3344579999999999999999999987666544433 445688876

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.61  E-value=0.072  Score=38.21  Aligned_cols=51  Identities=8%  Similarity=0.126  Sum_probs=39.1

Q ss_pred             CceEEEEEEeCCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          126 GDHTAIELIGRDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       126 ~~~t~i~i~~~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      .+.|.|.+..+|+||-|+++...|+++|+|+..-...-.. ....=.|+|.-
T Consensus        14 ~~ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~   65 (97)
T d1phza1          14 NGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYL   65 (97)
T ss_dssp             SCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECB
T ss_pred             CCcEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEc
Confidence            4567888888999999999999999999999766555433 33344688854

>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Phenylalanine hydroxylase N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.45  E-value=0.093  Score=37.60  Aligned_cols=47  Identities=2%  Similarity=-0.068  Sum_probs=34.0

Q ss_pred             eeEEEEEeCCCCchHHHHHhhhcCCceEEEEEEEEec-CCeeEEEEee
Q 021245          268 YSVVNVKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQVRVL  314 (315)
Q Consensus       268 ~tvieV~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~-g~~a~D~F~v  314 (315)
                      .|-|-+...|+||-|+++...|++.|||+..-.---. +..-+=.|||
T Consensus        16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~i   63 (97)
T d1phza1          16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFT   63 (97)
T ss_dssp             CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEE
T ss_pred             cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEE
Confidence            3444488899999999999999999999876544322 2333335776

>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phenylalanine metabolism regulatory domain
domain: Prephenate dehydratase C-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.95  E-value=0.24  Score=33.90  Aligned_cols=42  Identities=7%  Similarity=-0.021  Sum_probs=29.8

Q ss_pred             EEeCCCCchHHHHHhhhcCCceEEEEEEEEec-CCeeEEEEee
Q 021245          273 VKCRDRAKLMFDIVCTLTDMQYVVFHAAISSD-GPHASQVRVL  314 (315)
Q Consensus       273 V~a~DRpGLL~~I~~~l~~~~i~I~~AkI~T~-g~~a~D~F~v  314 (315)
                      +...|+||-|+++...|++.|||+.+-.--=. |..-+=.|||
T Consensus         7 ~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~i   49 (80)
T d2qmwa2           7 TPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFV   49 (80)
T ss_dssp             EESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEE
T ss_pred             EeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEE
Confidence            33569999999999999999999987654322 2223335665

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.10  E-value=0.94  Score=29.59  Aligned_cols=60  Identities=13%  Similarity=0.061  Sum_probs=39.4

Q ss_pred             EEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHH
Q 021245           36 TVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKAL  102 (315)
Q Consensus        36 ~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L  102 (315)
                      ..|.+.+   +++||+.+++..+|++.|+||.-....+..-.  -.|.|.+.+.     ++..+.|.+.+
T Consensus         2 a~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~--Is~~V~~~d~-----~~Av~~Lh~~F   64 (67)
T d2hmfa2           2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVN--ISFVIDEKDL-----LNCVRKLHEKF   64 (67)
T ss_dssp             EEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSE--EEEEEEGGGH-----HHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccce--EEEEEeHHHH-----HHHHHHHHHHH
Confidence            3567776   59999999999999999999984443332222  3577765322     23455555544

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.74  E-value=0.42  Score=33.44  Aligned_cols=34  Identities=15%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEE
Q 021245          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAE  160 (315)
Q Consensus       127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~  160 (315)
                      +.+.|.|.+   .++||+++++..+|+++|+||.--.
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is   48 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA   48 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE
Confidence            567888886   4999999999999999999998543

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.78  E-value=0.5  Score=33.04  Aligned_cols=46  Identities=13%  Similarity=0.211  Sum_probs=35.1

Q ss_pred             CeEEEEEEec---CCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEc
Q 021245           34 ECTVVKVDSV---NKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVID   83 (315)
Q Consensus        34 ~~~~v~V~~~---DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~   83 (315)
                      +.+.|+|.+.   ++||+++++..+|++.|+||.--.  +....  -.|.+.+
T Consensus        12 ~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is--~Se~~--is~~v~~   60 (91)
T d2cdqa2          12 NVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVA--TSEVS--ISLTLDP   60 (91)
T ss_dssp             EEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEE--EETTE--EEEEECC
T ss_pred             CEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEE--ecCCe--EEEEEch
Confidence            6778999875   999999999999999999999543  43322  2466643

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=83.15  E-value=1.8  Score=30.56  Aligned_cols=48  Identities=19%  Similarity=0.225  Sum_probs=35.3

Q ss_pred             ceEEEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeCCeEEEEEEEEe
Q 021245          127 DHTAIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHNRRIACVLYVND  176 (315)
Q Consensus       127 ~~t~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~~~~~d~F~V~~  176 (315)
                      +...|.+.|   +++||+.+++..+|+++|+||.--.  ......--.|.|..
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIs--Q~~Se~~Isf~V~~   64 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILIS--QGSSETNISLVVSE   64 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEE--ECCTTCCEEEEECS
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHee--ccCCcceEEEEEeH
Confidence            567888887   6999999999999999999987422  11233444566654

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=82.47  E-value=1  Score=31.86  Aligned_cols=65  Identities=11%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             CeEEEEEEe---cCCccHHHHHHHHHHhCCceEEEEEEEeeCCEEEEEEEEEcCCCCCCCChhHHHHHHHHHCCC
Q 021245           34 ECTVVKVDS---VNKPGILLEVVQVLSDLDLIITKAYISSDGGWFMDVFHVIDQQGKKITDGKTIDYIEKALGPK  105 (315)
Q Consensus        34 ~~~~v~V~~---~DrpGLl~~i~~~L~~~glnI~~A~I~t~~g~~~d~f~v~~~~g~~~~~~~~~~~l~~~L~~~  105 (315)
                      +...|++.|   +++||+.+++..+|++.|+||.--...+..-  --.|.|...+.     ++..+.|.+.+...
T Consensus        14 nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~--~Isf~V~~~d~-----~~a~~~L~~~f~~~   81 (100)
T d2hmfa3          14 NVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSET--NISLVVSEEDV-----DKALKALKREFGDF   81 (100)
T ss_dssp             EEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTC--CEEEEECSTTH-----HHHHHHHHHHHCCC
T ss_pred             CEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcc--eEEEEEeHHHH-----HHHHHHHHHHHHhh
Confidence            567889987   6999999999999999999999544333221  13566643221     34566777776543

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=81.53  E-value=3.9  Score=26.39  Aligned_cols=44  Identities=14%  Similarity=0.354  Sum_probs=32.6

Q ss_pred             EEEEEe---CCcccHHHHHHHHHHhCCceEEEEEEEeeC-CeEEEEEEEEe
Q 021245          130 AIELIG---RDRPGLLSEISAVLANLRFNVAAAEVWTHN-RRIACVLYVND  176 (315)
Q Consensus       130 ~i~i~~---~DrpgLl~~i~~~l~~~~l~I~~A~i~t~~-~~~~d~F~V~~  176 (315)
                      .|.+.+   +++||+.+++..+|+++|+||.-.   +.+ ...--.|.|.+
T Consensus         3 ~vsvvG~gm~~~~gi~arif~~L~~~~InV~mI---sq~~Se~~Is~~V~~   50 (67)
T d2hmfa2           3 VISVVGAGMRGAKGIAGKIFTAVSESGANIKMI---AQGSSEVNISFVIDE   50 (67)
T ss_dssp             EEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEE---EESSCSSEEEEEEEG
T ss_pred             EEEEEeCCCCCCccHHHHHHHHHHHcCCChHHe---eecCccceEEEEEeH
Confidence            466766   599999999999999999998632   222 33455677765