Citrus Sinensis ID: 021260

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
Protein Sequence
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEEEccccccccccccccccccccccEEEEEccEEEEEEEEEEccccccccEEEEEcccccccccccccccccEEEcccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccEEEEEEcccccccccEEEEEEEcccccEEEEEEEEccccccccccccccEEEEcccccEEEcccEEEEEEEEEccccccccEEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MTIILSAIYttgwvgmgfskdgmmagSSAMVGwfnkkgqprikqyylqgtrssqvihdkgelpltnvppvvaIHGAMIYMAFQLKFENHLRQQPIilafgsrypkhfhlthhvdkrtimfdfsggssSVLYVSSrekknhgalgmigwgiilpvgaiipryfkhkdplWYYLHAIIQLVGFIFGLATVLLGIQLYNklnvknanisaHRGIGIFILVLSILQILAFFlrpskdskfrRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWmkkrsdkttapptfqmnpvq
Flexible Loop (DISEMBL)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQvihdkgelpltNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWmkkrsdkttapptfqmnpvq
Low Complexity Region (SEG)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFsggsssvlyvssREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFllavvllavivlETLSWMKKRSDKTTAPPTFQMNPVQ
Disordered region (IsUnstruct)
**IILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWM*******************
Disordered Region (DISOPRED)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYY**************ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLS*********************
Disordered Region (DISEMBL)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Disordered Region (DISPRO)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRY***********KRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRS***************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRSDKTTAPPTFQMNPVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	315	2.2.26 [Sep-21-2011]
Q6INU7	590	Putative ferric-chelate r	N/A	no	0.485	0.259	0.25	1e-06
Q6ZNA5	592	Ferric-chelate reductase	no	no	0.422	0.224	0.284	3e-05
Q8MSU3	647	Putative ferric-chelate r	yes	no	0.403	0.196	0.272	0.0001
Q8K385	592	Ferric-chelate reductase	yes	no	0.412	0.219	0.219	0.0007
A4QP81	573	Putative ferric-chelate r	no	no	0.888	0.488	0.226	0.0007

>sp|Q6INU7|FRRS1_XENLA Putative ferric-chelate reductase 1 OS=Xenopus laevis GN=frrs1 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 19/172 (11%)

Query: 105 KHFHLTHHVDKRTIMFDFS---GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRY 161
           +H       +++  + DF    GGS S L +     K HGA+  I W   + +G II R+
Sbjct: 339 RHHRQPLMTNRKYCITDFPEDVGGSRSPLII-----KLHGAMMFIAWMTTVSIGVIIARF 393

Query: 162 FKHKDP--------LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI 213
           FK   P        +W+ +H  + +      +   +L   +Y     K A    H  +G+
Sbjct: 394 FKPVWPTSSLFGEKIWFQIHRCLMITTVFLTVVAFVLPF-IYRGYFSKRAGYHPH--LGV 450

Query: 214 FILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI 265
            +++L++LQ +    RP   +  R  +NW H   G  A   A   + LG+ +
Sbjct: 451 TVMILTVLQPVLAVFRPPPQTHRRGIFNWTHWATGTAARIIAVAAMFLGMDL 502

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.
Xenopus laevis (taxid: 8355)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|Q6ZNA5|FRRS1_HUMAN Ferric-chelate reductase 1 OS=Homo sapiens GN=FRRS1 PE=2 SV=2

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 64/151 (42%), Gaps = 18/151 (11%)

Query: 124 GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYL-----HAIIQL 178
           GGS SVL +     K HGAL  + W   + +G ++ R+FK   P+W         A  Q+
Sbjct: 362 GGSHSVLLL-----KVHGALMFVAWMTTVSIGVLVARFFK---PVWSKAFLLGEAAWFQV 413

Query: 179 VGFIFGLATVLLGIQLYNKLNVKNANISAHRG----IGIFILVLSILQILAFFLRPSKDS 234
              +    TVL  I       +     S H G    +G  ++ L++LQ L    RP    
Sbjct: 414 HRMLMFTTTVLTCIAFVMPF-IYRGGWSRHAGYHPYLGCIVMTLAVLQPLLAVFRPPLHD 472

Query: 235 KFRRFWNWYHHWFGRLALFFASVNIVLGIQI 265
             R+ +NW H   G  A   A   + LG+ +
Sbjct: 473 PRRQMFNWTHWSMGTAARIIAVAAMFLGMDL 503

Ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8MSU3|FRRS1_DROME Putative ferric-chelate reductase 1 homolog OS=Drosophila melanogaster GN=CG8399 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 16/143 (11%)

Query: 140 HGALGMIGWGIILPVGAIIPRYFKHK--------DPLWYYLHAIIQLVGFIFGLAT-VLL 190
           HGA  +  W     +G I  RYFK             W+  H ++ +  +   +A  VL+
Sbjct: 409 HGAFMIAAWIGTTSLGIIFARYFKQTWVGSQSCGTDQWFAWHRLLMVTTWSLTVAAYVLI 468

Query: 191 GIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL 250
            ++L      K A   AH  IG+  ++L  +Q +    RP  + K R ++NW H   G L
Sbjct: 469 WVEL------KQAVWHAHSIIGLITVILCFIQPIGALFRPGPNDKKRPYFNWGHWLGGNL 522

Query: 251 ALFFASVNIVLGIQIGYAG-NEW 272
           A     V I   +++  A   EW
Sbjct: 523 AHILGIVTIFFSVKLPKAELPEW 545

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8K385|FRRS1_MOUSE Ferric-chelate reductase 1 OS=Mus musculus GN=FRRS1 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 11/141 (7%)

Query: 133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKH--------KDPLWYYLHAIIQLVGFIFG 184
           SS   K HGAL  + W   + +G ++ R+F+         ++  W+ +H ++ +   +  
Sbjct: 366 SSPLLKAHGALMFVAWMTTVSIGVLVARFFRSVWSKAFFLREAAWFQVHRMLMVATSLLT 425

Query: 185 LATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH 244
               +L        + +      H  +G  ++ L++LQ L    RP      R+ +NW H
Sbjct: 426 CVAFVLPFVYRGGWSWRAGY---HPYLGCTVMTLAVLQPLLATFRPPLHDPRRQVFNWTH 482

Query: 245 HWFGRLALFFASVNIVLGIQI 265
              G  A   A   + LG+ +
Sbjct: 483 WSVGTAARIIAVAAMFLGMDL 503

Ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A4QP81|FRRS1_DANRE Putative ferric-chelate reductase 1 OS=Danio rerio GN=frrs1 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 125/323 (38%), Gaps = 43/323 (13%)

Query: 12  GWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVV 71
           G+V +GFS D  M      +   +  G  +++  +  G RS   I     L L NV  ++
Sbjct: 238 GYVAIGFSDDQQMGNDDVYICGKDNNGNLQVQHAFNSG-RSRPAI-----LSLGNVTDIL 291

Query: 72  -AIHGAMIYMAF-------QLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFDFS 123
            A+    I  +F                +  +++A GS      ++  H +K       +
Sbjct: 292 TAVTNGNINCSFISRNTISTASRAATTNEYYLMIAAGSS--SQGNIQFHTNKYVTSTKVN 349

Query: 124 GGSSSVLYVSSRE----KKNHGALGMIGWGIILPVGAIIPRYFK---------HKDPLWY 170
             + SV+  S  E     K HG L +I W     +G II RY K          KD  W+
Sbjct: 350 LLNPSVVITSEEEFPPMVKAHGCLMLISWMATGSIGMIIARYLKGVAKGQGCFGKD-FWF 408

Query: 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQ--ILAFFL 228
             H  +  +  I      ++       ++  +    AH  +G  +++LS++Q  + AF  
Sbjct: 409 VAHVSLMTLSIIATAIAFIIVF-----VSAGDWAGGAHPVLGCLVMILSLIQPIVAAFRC 463

Query: 229 RPSKDSKFRRFWNWYHHW--FGRLALFFASVNIVLGIQIGYAGNEW--KIGYGFLLAVVL 284
            P  + +F   +NW H    F    L  A++   L +   Y  + W  K+  G+L    L
Sbjct: 464 EPQHERRF--VFNWAHSCNAFAIKCLAVAAIFTGLALFEEYDSDGWMLKVMGGYLAWEAL 521

Query: 285 LAVIVLETLSWMKKRSDKTTAPP 307
           + ++    L   KK S   +  P
Sbjct: 522 MYILQDLNLRAKKKDSQLCSCEP 544

Putative ferric-chelate reductases reduce Fe(3+) to Fe(2+) before its transport from the endosome to the cytoplasm.

Danio rerio (taxid: 7955)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
449478195	415	PREDICTED: uncharacterized LOC101206013	0.977	0.742	0.687	1e-125
449433034	376	PREDICTED: uncharacterized protein LOC10	0.977	0.819	0.687	1e-124
359489552	591	PREDICTED: uncharacterized protein LOC10	0.984	0.524	0.666	1e-121
297745450	392	unnamed protein product [Vitis vinifera]	0.984	0.790	0.666	1e-120
224130542	346	predicted protein [Populus trichocarpa]	0.984	0.895	0.660	1e-120
255564711	422	dopamine beta-monooxygenase, putative [R	0.984	0.734	0.661	1e-119
356573227	407	PREDICTED: uncharacterized protein LOC10	0.974	0.754	0.645	1e-111
356506067	407	PREDICTED: uncharacterized protein LOC10	0.974	0.754	0.642	1e-110
356520280	405	PREDICTED: putative ferric-chelate reduc	0.974	0.758	0.620	1e-109
297821054	397	hypothetical protein ARALYDRAFT_349233 [	0.984	0.780	0.591	1e-101

>gi|449478195|ref|XP_004155247.1| PREDICTED: uncharacterized LOC101206013 [Cucumis sativus]

 Score =  452 bits (1163), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/314 (68%), Positives = 262/314 (83%), Gaps = 6/314 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           M +I+SA+YTTGWVG+GFS+DGMM GSSAMVGW NKKG  RI QYYLQG + S+VI DKG
Sbjct: 107 MNVIVSALYTTGWVGIGFSRDGMMVGSSAMVGWVNKKGHARIHQYYLQGRKQSEVIQDKG 166

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           ELPLTNVP  V +HGA IY+AFQLKF   + QQPI+LAFG+ YP+H HL+ H DK  ++F
Sbjct: 167 ELPLTNVPSSVVLHGATIYLAFQLKFSATVSQQPILLAFGNAYPRHNHLSTHSDKTAVVF 226

Query: 121 DFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVG 180
           DFS  +++   +  + KKNHG LG+IGWG+ILPVGAIIPRYF+HKDPLWYYLH+ IQ VG
Sbjct: 227 DFSAAAAAGGEI-GQTKKNHGVLGIIGWGLILPVGAIIPRYFRHKDPLWYYLHSAIQFVG 285

Query: 181 FIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFW 240
           F  GL TV+LG QLYNK+   NA++  HRGIGIF+LVLSILQ+LAFFLRP+K++K R++W
Sbjct: 286 FAIGLTTVVLGRQLYNKI---NADVPTHRGIGIFVLVLSILQVLAFFLRPNKEAKIRKYW 342

Query: 241 NWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRS 300
           NWYHHWFGR+ALFF ++NIVLGIQIG AGNEWK+GYGFLL+++L+AVIVLE L+WM KRS
Sbjct: 343 NWYHHWFGRIALFFGALNIVLGIQIGGAGNEWKVGYGFLLSIILIAVIVLEALAWM-KRS 401

Query: 301 DKTTAPPTFQMNPV 314
           DK  A  +FQMNPV
Sbjct: 402 DK-AAMNSFQMNPV 414

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433034|ref|XP_004134303.1| PREDICTED: uncharacterized protein LOC101206013 [Cucumis sativus]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 216/314 (68%), Positives = 262/314 (83%), Gaps = 6/314 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           M +I+SA+YTTGWVG+GFS+DGMM GSSAMVGW NKKG  RI QYYLQG + S+VI DKG
Sbjct: 68  MNVIVSALYTTGWVGIGFSRDGMMVGSSAMVGWVNKKGHARIHQYYLQGRKQSEVIQDKG 127

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           ELPLTNVP  V +HGA IY+AFQLKF   + QQPI+LAFG+ YP+H HL+ H DK  ++F
Sbjct: 128 ELPLTNVPSSVVLHGATIYLAFQLKFSATVSQQPILLAFGNAYPRHNHLSTHSDKTAVVF 187

Query: 121 DFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVG 180
           DFS  +++   +  + KKNHG LG+IGWG+ILPVGAIIPRYF+HKDPLWYYLH+ IQ VG
Sbjct: 188 DFSAAAAAGGEI-GQTKKNHGVLGIIGWGLILPVGAIIPRYFRHKDPLWYYLHSAIQFVG 246

Query: 181 FIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFW 240
           F  GL TV+LG QLYNK+   NA++  HRGIGIF+LVLSILQ+LAFFLRP+K++K R++W
Sbjct: 247 FAIGLTTVVLGRQLYNKI---NADVPTHRGIGIFVLVLSILQVLAFFLRPNKEAKIRKYW 303

Query: 241 NWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKRS 300
           NWYHHWFGR+ALFF ++NIVLGIQIG AGNEWK+GYGFLL+++L+AVIVLE L+WM KRS
Sbjct: 304 NWYHHWFGRIALFFGALNIVLGIQIGGAGNEWKVGYGFLLSIILIAVIVLEALAWM-KRS 362

Query: 301 DKTTAPPTFQMNPV 314
           DK  A  +FQMNPV
Sbjct: 363 DK-AAMNSFQMNPV 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489552|ref|XP_002278384.2| PREDICTED: uncharacterized protein LOC100258436 [Vitis vinifera]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/315 (66%), Positives = 253/315 (80%), Gaps = 5/315 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           +TIILSA+YTTGWVG+GFS+DGMM GSSA+VGWFNK+G  RIKQYYLQGT+++QVI DKG
Sbjct: 280 LTIILSAVYTTGWVGIGFSRDGMMVGSSAIVGWFNKQGHARIKQYYLQGTKTTQVIPDKG 339

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           ELPLT +P  VA+HGA +YMAFQ+K E+ L  QPI+LAFGS YP H HLTHH DK TI+F
Sbjct: 340 ELPLTKIPSAVALHGATMYMAFQIKPEDRLTHQPILLAFGSGYPVHNHLTHHDDKTTILF 399

Query: 121 DFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 179
           DFS GS S       E KKNHG LG++GWG+ LP GAI+ RYF+HKDPLW+YLH  IQ V
Sbjct: 400 DFSAGSVSTGSNGVVELKKNHGILGIVGWGLFLPCGAIVARYFRHKDPLWFYLHISIQFV 459

Query: 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
           GFIFGLATV+ G QLYNK+   +A++  HRGIGIF+L LSILQ++AFFLRP+ ++K R++
Sbjct: 460 GFIFGLATVVAGTQLYNKI---HAHVRTHRGIGIFVLTLSILQVMAFFLRPNHEAKTRKY 516

Query: 240 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKR 299
           WNWYHHW GR+ALF  ++NIVLGIQIG AGN WKI YGFLL  VL++V  LE L +M+K 
Sbjct: 517 WNWYHHWVGRIALFLGALNIVLGIQIGNAGNSWKISYGFLLGAVLISVFALEALLFMRK- 575

Query: 300 SDKTTAPPTFQMNPV 314
           S+K    P FQMNPV
Sbjct: 576 SEKLNENPAFQMNPV 590

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745450|emb|CBI40530.3| unnamed protein product [Vitis vinifera]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/315 (66%), Positives = 253/315 (80%), Gaps = 5/315 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           +TIILSA+YTTGWVG+GFS+DGMM GSSA+VGWFNK+G  RIKQYYLQGT+++QVI DKG
Sbjct: 81  LTIILSAVYTTGWVGIGFSRDGMMVGSSAIVGWFNKQGHARIKQYYLQGTKTTQVIPDKG 140

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           ELPLT +P  VA+HGA +YMAFQ+K E+ L  QPI+LAFGS YP H HLTHH DK TI+F
Sbjct: 141 ELPLTKIPSAVALHGATMYMAFQIKPEDRLTHQPILLAFGSGYPVHNHLTHHDDKTTILF 200

Query: 121 DFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 179
           DFS GS S       E KKNHG LG++GWG+ LP GAI+ RYF+HKDPLW+YLH  IQ V
Sbjct: 201 DFSAGSVSTGSNGVVELKKNHGILGIVGWGLFLPCGAIVARYFRHKDPLWFYLHISIQFV 260

Query: 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
           GFIFGLATV+ G QLYNK+   +A++  HRGIGIF+L LSILQ++AFFLRP+ ++K R++
Sbjct: 261 GFIFGLATVVAGTQLYNKI---HAHVRTHRGIGIFVLTLSILQVMAFFLRPNHEAKTRKY 317

Query: 240 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKR 299
           WNWYHHW GR+ALF  ++NIVLGIQIG AGN WKI YGFLL  VL++V  LE L +M+K 
Sbjct: 318 WNWYHHWVGRIALFLGALNIVLGIQIGNAGNSWKISYGFLLGAVLISVFALEALLFMRK- 376

Query: 300 SDKTTAPPTFQMNPV 314
           S+K    P FQMNPV
Sbjct: 377 SEKLNENPAFQMNPV 391

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130542|ref|XP_002320865.1| predicted protein [Populus trichocarpa] gi|222861638|gb|EEE99180.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/315 (66%), Positives = 251/315 (79%), Gaps = 5/315 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           +T ILSA+YT GWV MGFSKDG M GSSAMVGWFN+KGQ RIK+YYLQGTR SQVI D G
Sbjct: 36  VTFILSAVYTIGWVAMGFSKDGRMVGSSAMVGWFNRKGQARIKEYYLQGTRPSQVIEDAG 95

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           EL LT VPP V I+GAMIY+AFQ KFE  L  QPIILAFG+RYP H+ L+ H DK  I+F
Sbjct: 96  ELDLTKVPPAVVINGAMIYLAFQAKFEKPLASQPIILAFGTRYPNHYRLSSHDDKTAILF 155

Query: 121 DFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 179
           DF+ GS+S   ++  + KKNHG LG + WG+ LP GAI+ RY KHK+PLWYYLHA IQ +
Sbjct: 156 DFTAGSASRARINPGQMKKNHGVLGTLAWGLFLPSGAIVARYLKHKEPLWYYLHAGIQFL 215

Query: 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
           GF+ GLA V+LG QLY+K+   +AN+ +HRGIGIF L LSILQILAFFLRP KD+K R++
Sbjct: 216 GFLLGLANVVLGQQLYSKI---DANVPSHRGIGIFALTLSILQILAFFLRPKKDAKIRKY 272

Query: 240 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKR 299
           WNWYHHWFGR+ALFF   NIV GI +G AG  WKIG+GFL+ ++L+ VI+LETL+W+ +R
Sbjct: 273 WNWYHHWFGRIALFFGVFNIVWGIHLGAAGTSWKIGFGFLITMILVTVIILETLTWL-RR 331

Query: 300 SDKTTAPPTFQMNPV 314
           S+KTT P TFQMNP+
Sbjct: 332 SEKTTPPETFQMNPI 346

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255564711|ref|XP_002523350.1| dopamine beta-monooxygenase, putative [Ricinus communis] gi|223537438|gb|EEF39066.1| dopamine beta-monooxygenase, putative [Ricinus communis]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 209/316 (66%), Positives = 251/316 (79%), Gaps = 6/316 (1%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           +T I+SA+YTTGWVG+GFSKDG+MAGSSAMVGWF K+G  RIKQYYLQG RSSQVI D G
Sbjct: 112 VTFIISAVYTTGWVGIGFSKDGLMAGSSAMVGWFTKQGHARIKQYYLQGPRSSQVIADAG 171

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMF 120
           EL +T VPP V +HG MIY+AFQ KFE  L +QPIILAFG+RYP H HL+ H DK TI+F
Sbjct: 172 ELDITKVPPAVVLHGPMIYLAFQAKFEKPLARQPIILAFGTRYPNHHHLSIHDDKTTILF 231

Query: 121 DFSGGSSSVLYVSSRE-KKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 179
           DFS GS+S  Y++  + KKNHG LG+  W ++LPVGAI+ RY KHKDPLWYYLHA IQ V
Sbjct: 232 DFSAGSASSGYINPGQMKKNHGILGIFAWSLLLPVGAIVARYLKHKDPLWYYLHAGIQFV 291

Query: 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
           GF+F LATV+LG QLY K+   NA+I AHR IGIF+L ++ILQILAFFLRP KD+K RR+
Sbjct: 292 GFLFALATVVLGQQLYTKI---NADIPAHRSIGIFVLTITILQILAFFLRPKKDAKIRRY 348

Query: 240 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKKR 299
           WNWYH WFGR+ALFF ++N+VLGI  G AG  WKI YGFL+A ++L VI+LE LS  + R
Sbjct: 349 WNWYHGWFGRIALFFGALNVVLGIHAGSAGIAWKICYGFLIATIMLTVIILEVLS--RLR 406

Query: 300 SDKTTAPPTFQMNPVQ 315
             +TT P +FQMNP+ 
Sbjct: 407 RSETTPPSSFQMNPIS 422

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573227|ref|XP_003554764.1| PREDICTED: uncharacterized protein LOC100792152 [Glycine max]

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/316 (64%), Positives = 254/316 (80%), Gaps = 9/316 (2%)

Query: 2   TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGE 61
           TIILSA YT GWVG+GFS+DGMMAGSSAMVGW NK G  ++KQ+YL+G R S+VI DKGE
Sbjct: 86  TIILSAPYTVGWVGIGFSRDGMMAGSSAMVGWINKHGHAKVKQFYLRGRRQSEVIIDKGE 145

Query: 62  LPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFD 121
           LPL  VP  VA +GA IY+AFQL+      +QPI+LAF +++P + HL+ HVDK  I+FD
Sbjct: 146 LPLNTVPAAVATNGAEIYIAFQLQTTIPFGKQPILLAFSTKHPLNHHLSKHVDKAAIIFD 205

Query: 122 FSGGSSSVLYVSS---REKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQL 178
           FS GS+    VS+     +K+HG +G+IGWG+ILPVGAII RYF+HKDPLW+YLH++IQ 
Sbjct: 206 FSSGSTGP--VSNGLIHMRKSHGIVGIIGWGLILPVGAIIARYFRHKDPLWFYLHSVIQF 263

Query: 179 VGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRR 238
           VGF FGL TVLLG+QLY  ++V   +I AHRGIGIF+LVLSILQILAFFLRP KDSK+R 
Sbjct: 264 VGFSFGLGTVLLGLQLYRNMHV---HIPAHRGIGIFVLVLSILQILAFFLRPDKDSKYRN 320

Query: 239 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKK 298
            WN YH WFGR+ALFFA++NIVLG++   AGN+WK GYGFLL++VL+AVIVLE L+++ K
Sbjct: 321 IWNLYHSWFGRMALFFAALNIVLGMRAAGAGNDWKAGYGFLLSIVLVAVIVLEVLAYL-K 379

Query: 299 RSDKTTAPPTFQMNPV 314
           RS+K + P TFQM+PV
Sbjct: 380 RSEKRSLPQTFQMDPV 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506067|ref|XP_003521809.1| PREDICTED: uncharacterized protein LOC100782231 [Glycine max]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/316 (64%), Positives = 254/316 (80%), Gaps = 9/316 (2%)

Query: 2   TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGE 61
           TIILSA YT GWVG+GFS+DGMMAGSSAMVGW NK G  ++KQ+YL+G R S+VI DKGE
Sbjct: 86  TIILSAPYTVGWVGIGFSRDGMMAGSSAMVGWINKHGHAKVKQFYLRGRRQSEVIIDKGE 145

Query: 62  LPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFD 121
           LPL  VP  VA +GA IY+AFQL+      +QPI+LAF +++P + HL+ HVDK  I+FD
Sbjct: 146 LPLNTVPAAVATNGAEIYIAFQLQTTIPFGKQPILLAFSTKHPLNHHLSKHVDKTAIIFD 205

Query: 122 FSGGSSSVLYVSS---REKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQL 178
           FS GS+    VS+     +K+HG +G+IGWG+ILPVGAII RYF++KDPLW+YLH++IQ 
Sbjct: 206 FSSGSTGP--VSNGLIHIRKSHGIVGIIGWGLILPVGAIIARYFRYKDPLWFYLHSVIQF 263

Query: 179 VGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRR 238
           VGF FGL TVLLG+QLY  ++V   +I AHRGIGIF+LVLSILQILAFFLRP KDSK+R 
Sbjct: 264 VGFSFGLGTVLLGLQLYRNMHV---HIPAHRGIGIFVLVLSILQILAFFLRPDKDSKYRN 320

Query: 239 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKK 298
            WN YH WFGR+ALFFA++NIVLG++   AGN+WK GYGFLL++VL+AVIVLE L+++ K
Sbjct: 321 IWNLYHGWFGRMALFFAALNIVLGMRAAGAGNDWKAGYGFLLSIVLVAVIVLEVLAYL-K 379

Query: 299 RSDKTTAPPTFQMNPV 314
           RS+K + P TFQM+PV
Sbjct: 380 RSEKRSLPQTFQMDPV 395

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520280|ref|XP_003528791.1| PREDICTED: putative ferric-chelate reductase 1-like [Glycine max]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 196/316 (62%), Positives = 251/316 (79%), Gaps = 9/316 (2%)

Query: 2   TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGE 61
           TIILSA YT GWVG+GFS+DGMM GSSAMVGW +K G  +IKQ+YL+G + S+VI DKGE
Sbjct: 87  TIILSAPYTIGWVGIGFSRDGMMVGSSAMVGWISKHGHAKIKQFYLRGRKQSEVIIDKGE 146

Query: 62  LPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKRTIMFD 121
           L L N+P  VA +GA I++AFQL+     ++QPI+LAFGS+YP++ HL+ H DK  I+FD
Sbjct: 147 LLLNNIPAAVATNGAEIHIAFQLQMTTPFQKQPILLAFGSKYPQNHHLSKHEDKTAIVFD 206

Query: 122 FSGGSSSVLYVSS---REKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQL 178
           FS GS+    VSS   + + NHG L +IGWG+ILPVGAII RYF+HKDPLW+YLHAIIQ 
Sbjct: 207 FSAGSTGP--VSSELIQMRTNHGILAIIGWGLILPVGAIIARYFRHKDPLWFYLHAIIQF 264

Query: 179 VGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRR 238
           VGF FGL TV+LG+QLY+K++V   +I AHRGIGIF LVLSILQ+LA FLRP+KDSK R+
Sbjct: 265 VGFTFGLGTVVLGLQLYSKMHV---HIPAHRGIGIFALVLSILQVLALFLRPNKDSKIRK 321

Query: 239 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIVLETLSWMKK 298
            WNWYH WFGR+AL FA++NIVLG+Q   AG++WKIGYGF+  ++++  IVLE L+++KK
Sbjct: 322 IWNWYHSWFGRMALIFAAINIVLGMQAAGAGSDWKIGYGFVFGIMVVVAIVLEVLAYLKK 381

Query: 299 RSDKTTAPPTFQMNPV 314
            S+  + PP FQ++PV
Sbjct: 382 -SEMRSLPPNFQLDPV 396

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821054|ref|XP_002878410.1| hypothetical protein ARALYDRAFT_349233 [Arabidopsis lyrata subsp. lyrata] gi|297324248|gb|EFH54669.1| hypothetical protein ARALYDRAFT_349233 [Arabidopsis lyrata subsp. lyrata]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 188/318 (59%), Positives = 237/318 (74%), Gaps = 8/318 (2%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
           MTII+SA+YTTGWVG+GFSK+G M GSSAMVGW +KKG  +IKQYYLQGT   QV+ D+G
Sbjct: 78  MTIIVSALYTTGWVGIGFSKEGRMVGSSAMVGWISKKGHAKIKQYYLQGTERDQVVPDQG 137

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHF-HLTHHVDKRTIM 119
           EL L  VPPVVA+HGAMIY+AFQ+KF   + Q+ +ILA  + YP     LT H DK T++
Sbjct: 138 ELQLEKVPPVVALHGAMIYLAFQVKFSVRVPQRAVILALSTAYPSKLGRLTKHDDKTTVI 197

Query: 120 FDFS--GGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQ 177
            DFS   G++S+   +S EK  HG + ++GWG +LPVGAI+ RY +HKDPLWYYLH   Q
Sbjct: 198 VDFSKASGATSMKTTTSTEKTKHGVMAILGWGFLLPVGAILARYLRHKDPLWYYLHIGFQ 257

Query: 178 LVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFR 237
             GFIFGLA V+LGIQLYN++     +I AHRGIGIF+LVLSILQ+LAFF RP K++K R
Sbjct: 258 FTGFIFGLAAVILGIQLYNRI---QPDIPAHRGIGIFLLVLSILQVLAFFARPQKETKMR 314

Query: 238 RFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE-WKIGYGFLLAVVLLAVIVLETLSWM 296
           R+WNWYHHW GR++LFF +VNIVLGI++   G + WKIGYGF+L+V LLA +VLE     
Sbjct: 315 RYWNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLLAFVVLEIFRIR 374

Query: 297 KK-RSDKTTAPPTFQMNP 313
               S  +  PP+F+ +P
Sbjct: 375 GSIGSPSSHTPPSFEAHP 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	315
TAIR|locus:2076770	398	AT3G61750 [Arabidopsis thalian	0.984	0.778	0.550	6.1e-94
TAIR|locus:2091097	369	AT3G07570 [Arabidopsis thalian	0.930	0.794	0.384	4.9e-53
TAIR|locus:2049254	404	AT2G04850 [Arabidopsis thalian	0.501	0.391	0.341	1.6e-27
TAIR|locus:505006660	404	AT5G35735 "AT5G35735" [Arabido	0.926	0.722	0.280	1.7e-27
TAIR|locus:2090240	393	AT3G25290 "AT3G25290" [Arabido	0.539	0.432	0.337	5.2e-26
TAIR|locus:2123271	394	AT4G12980 "AT4G12980" [Arabido	0.533	0.426	0.344	1.8e-25
TAIR|locus:2077690	466	AT3G59070 [Arabidopsis thalian	0.838	0.566	0.279	3e-25
TAIR|locus:2168948	395	AT5G47530 [Arabidopsis thalian	0.552	0.440	0.331	7.6e-25
TAIR|locus:2130789	402	AT4G17280 [Arabidopsis thalian	0.504	0.395	0.341	1.1e-23
TAIR|locus:2160220	907	AT5G54830 "AT5G54830" [Arabido	0.380	0.132	0.308	1.2e-10

TAIR|locus:2076770 AT3G61750 [Arabidopsis thaliana (taxid:3702)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 175/318 (55%), Positives = 220/318 (69%)

Query:     1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
             MTII+SA+YTTGWVG+GFSK+G M GSSAM+GW +KKG  +IKQYYLQGT   QV+ D+G
Sbjct:    78 MTIIVSALYTTGWVGIGFSKEGRMVGSSAMIGWISKKGHAKIKQYYLQGTERDQVVPDQG 137

Query:    61 ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSRYPKHF-HLTHHVDKRTIM 119
             EL L  VPPVVA+HGAMIY+AFQ+KF   + ++ +ILAF + YP     LT H DK T++
Sbjct:   138 ELQLQKVPPVVALHGAMIYLAFQVKFAVRVPRRAVILAFSTAYPSKLGRLTKHDDKTTVI 197

Query:   120 FDFXXXXXXXX--XXXXREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQ 177
              DF               EK  HG + ++GWG +LPVGAI+ RY +HKDPLWYYLH   Q
Sbjct:   198 VDFSKASGATSIKTTTSTEKTKHGVMAILGWGFLLPVGAILARYLRHKDPLWYYLHIGFQ 257

Query:   178 LVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFR 237
               GFIFGLA V+LGIQLYN++     +I AHRGIGIF+LVLS LQ+LAFF RP K++K R
Sbjct:   258 FTGFIFGLAAVILGIQLYNRIQ---PDIPAHRGIGIFLLVLSTLQVLAFFARPQKETKMR 314

Query:   238 RFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNE-WKIGYGFXXXXXXXXXXXXETLSWM 296
             R+WNWYHHW GR++LFF +VNIVLGI++   G + WKIGYGF            E     
Sbjct:   315 RYWNWYHHWIGRISLFFGAVNIVLGIRMADNGGDGWKIGYGFVLSVTLLAFVVLEIFRIR 374

Query:   297 KK-RSDKTTAPPTFQMNP 313
                 S  + +PP+F+ +P
Sbjct:   375 GTIGSPSSRSPPSFETHP 392

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2091097 AT3G07570 [Arabidopsis thaliana (taxid:3702)]

 Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
 Identities = 117/304 (38%), Positives = 165/304 (54%)

Query:     2 TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWF-NKKGQPRIKQYYLQGTRSSQVIHDKG 60
             + ILSA  ++ ++G+GFS +G M GSSA+VGW  +  G   +K Y L G    +V  D+G
Sbjct:    70 SFILSAPDSSAFIGIGFSTNGQMIGSSAIVGWIPSDGGSGTVKPYLLGGKSPGEVNPDQG 129

Query:    61 ELPLTNVPPVVAIHGAMIYMAFQLKFENHLRQQPIILAFGSR--YPKH--FHLTHH--VD 114
             +L + N    +    + +YM FQL     L +Q ++ A G    +P    F L  H  V 
Sbjct:   130 DLTIVNGSLKIESVSSRLYMRFQLTAT--LPRQSLLYAVGPAGFFPSSPDFRLREHRFVT 187

Query:   115 KRTIMFDFXXXXXXXXXXXXREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHA 174
               TI ++             + KK HG + M GWGI++ VGAI+ R+ K  DP W+Y H 
Sbjct:   188 TTTINYNTGSQSVVKVSPHSKLKKTHGLMNMFGWGILIIVGAIVARHMKQWDPTWFYAHI 247

Query:   175 IIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDS 234
              +Q  GF+ GL  V+ G+ L N+L  K  N+S H+G+GI ILV+ +LQ+LA   RP K S
Sbjct:   248 ALQTTGFLLGLTGVICGLVLENRL--KANNVSKHKGLGITILVMGVLQMLALLARPDKQS 305

Query:   235 KFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLS 294
             K+R++WNWYHH  GRL +  A  NI  GI +  AG  W  GYGF            E   
Sbjct:   306 KYRKYWNWYHHNIGRLLIILAISNIFYGIHLAKAGTSWNGGYGFAVAVLALTAIGLEVRK 365

Query:   295 WMKK 298
             ++KK
Sbjct:   366 FLKK 369

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2049254 AT2G04850 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.6e-27, Sum P(2) = 1.6e-27
 Identities = 56/164 (34%), Positives = 77/164 (46%)

Query:   137 KKNHGALGMIGWGIILPVGAIIPRYFKHKD---PLWYYLHAIIQLVGFIFGLATVLLGIQ 193
             K  HG +  I WG +LP GA+  RY +      P W+Y+HA IQL GF+ G     +GI 
Sbjct:   216 KVTHGVVNAISWGFLLPAGAVTARYLRQMQSIGPTWFYIHAAIQLTGFLLGTIGFSIGIV 275

Query:   194 LYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALF 253
             L +  N        HR +GI     + LQ LA   RP   +KFRR+W  YHH+ G   + 
Sbjct:   276 LGH--NSPGVTYGLHRSLGIATFTAAALQTLALLFRPKTTNKFRRYWKSYHHFVGYACVV 333

Query:   254 FASVNIVLGIQIGYAGNEW-KIGYGFXXXXXXXXXXXXETLSWM 296
                VN+  G ++   G  + K+GY              E  SW+
Sbjct:   334 MGVVNVFQGFEVLREGRSYAKLGYCLCLSTLVGVCVAMEVNSWV 377

GO:0005576 "extracellular region" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:505006660 AT5G35735 "AT5G35735" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 88/314 (28%), Positives = 135/314 (42%)

Query:    11 TGWVGMGFSKDG-MMAGSSAMVGWFN---KKGQPRIKQYYLQGTR--SSQVIHDKGELPL 64
             + WV  G +     M G+ A+V + N    + Q         GTR   S +      L  
Sbjct:    76 SSWVAWGLNPSSTQMVGTQALVAFTNTTTNQFQAYTSSVSSYGTRLERSSLSFGVSGLSA 135

Query:    65 TNVPPVVAIHGAMIYMAFQLKFENHLRQQ-PIILAFGSRYPK---HFHLTHHVDKRTIMF 120
             T V   V I  A + ++  L   N L Q  P++    + +     +   +  +D RT   
Sbjct:   136 TLVSGEVTIF-ATLELSPNLITANQLWQVGPVVNGVPASHQTSGDNMRSSGRIDFRTGQ- 193

Query:   121 DFXXXXXXXXXXXXREKKNHGALGMIGWGIILPVGAIIPRYFK-HKDPLWYYLHAIIQLV 179
                           R++  HG L  + WG+++P+GA++ RY K   DP W+YLH   Q+ 
Sbjct:   194 --ASAGGGGSGDRLRKRNTHGVLNAVSWGVLMPMGAMMARYMKVFADPTWFYLHIAFQVS 251

Query:   180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
             G++ G+A    GI+L N  +    + S HR +GI +   + LQ+ A  +RP  D K+R +
Sbjct:   252 GYVIGVAGWATGIKLGN--DSPGTSYSTHRNLGIALFTFATLQVFALLVRPKPDHKYRTY 309

Query:   240 WNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSWM--- 296
             WN YHH  G   +  + VNI  G  I    ++W+  Y              E L+W    
Sbjct:   310 WNVYHHTVGYTTIILSIVNIFKGFDILDPEDKWRWAYIGILIFLGACVLILEPLTWFIVL 369

Query:   297 --KKRSDKTTAPPT 308
               K R   T A PT
Sbjct:   370 RRKSRGGNTVAAPT 383

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009625 "response to insect" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

TAIR|locus:2090240 AT3G25290 "AT3G25290" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 60/178 (33%), Positives = 91/178 (51%)

Query:   135 REKKNHGALGMIGWGIILPVGAIIPRY---FKHKDPLWYYLHAIIQLVGFIFGLATVLLG 191
             + +  HG L  + WGI+ P+GAII RY   F   DP W+YLH   Q   ++ G+A    G
Sbjct:   215 KNRNIHGILNAVSWGILFPIGAIIARYMRVFDSADPAWFYLHVSCQFSAYVIGVAGWATG 274

Query:   192 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 251
             ++L N+   +    SAHR IGI +  L+ +Q+ A  LRP KD K+R +WN YHH  G   
Sbjct:   275 LKLGNES--EGIRFSAHRNIGIALFTLATIQMFAMLLRPKKDHKYRFYWNIYHHGVGYAI 332

Query:   252 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW---MKKRSDKTTAP 306
             L    +N+  G+ I    + +K  Y              E ++W   +K++S+ +  P
Sbjct:   333 LTLGIINVFKGLNILKPQDTYKTAYIAVIAVLGGIALLLEAITWVVVLKRKSNNSMKP 390

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2123271 AT4G12980 "AT4G12980" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 61/177 (34%), Positives = 92/177 (51%)

Query:   137 KKN-HGALGMIGWGIILPVGAIIPRY---FKHKDPLWYYLHAIIQLVGFIFGLATVLLGI 192
             K+N HG L  + WG++ P+GA+I RY   F+  DP W+YLH   Q   ++ G+A    G+
Sbjct:   217 KRNIHGILNAVSWGLLFPIGAMIARYMRIFESADPAWFYLHVSCQFSAYVIGVAGWATGL 276

Query:   193 QLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLAL 252
             +L ++   K    + HR IGI +  ++ LQ+ A  LRP KD KFR  WN YHH  G   L
Sbjct:   277 KLGSES--KGIQYNTHRNIGICLFSIATLQMFAMLLRPRKDHKFRFVWNIYHHGVGYSIL 334

Query:   253 FFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW---MKKRSDKTTAP 306
                 +N+  G+ I    + +K  Y              E ++W   +K++S K+T P
Sbjct:   335 ILGIINVFKGLSILNPKHTYKTAYIAVIGTLGGITLLLEVVTWVIVLKRKSAKSTKP 391

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2077690 AT3G59070 [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 3.0e-25, P = 3.0e-25
 Identities = 80/286 (27%), Positives = 125/286 (43%)

Query:     6 SAIYTTGWVGMGFSKDGM-MAGSSAMVGWFNKKGQPRIKQYYLQGTRS-SQVIHDKG-EL 62
             S + ++ W+    +     M G+ A+V + N      + + Y     S S ++ +    L
Sbjct:    79 SNLESSSWISWAINPTSKGMVGAQALVAYRNSTSG--VMRAYTSSINSYSPMLQESPLSL 136

Query:    63 PLTNVPPVVAIHGAMIYMAFQLK----FENHLRQQ-PIILAFGSRYPKHFHLTHHVDKRT 117
              +T V    +    MI+    L       NHL Q  P  L  G R   H     ++ K  
Sbjct:   137 RVTQVSAEYSNGEMMIFATLVLPPNTTVVNHLWQDGP--LKEGDRLGMHAMSGDNL-KSM 193

Query:   118 IMFDFXXXXXXXXXXXXRE----KKNHGALGMIGWGIILPVGAIIPRYFKHK---DPLWY 170
                D             R     K+ H  +  + WGI++P+G +  RY K+    DP W+
Sbjct:   194 ASLDLLSGQVTTTKSVNRNMLLVKQIHAIVNALSWGILMPIGVMAARYMKNYEVLDPTWF 253

Query:   171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRP 230
             Y+H + Q  G+  GL   L G  +Y   +      + H  IG+ +  L  LQIL+   RP
Sbjct:   254 YIHVVCQTTGYFSGLIGGL-GTAIYMARHT-GMRTTLHTVIGLLLFALGFLQILSLKARP 311

Query:   231 SKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGY 276
             +KD K+R++WNWYHH  G + +  +  NI  G+ I   G+ WKI Y
Sbjct:   312 NKDHKYRKYWNWYHHTMGYIVIVLSIYNIYKGLSILQPGSIWKIAY 357

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2168948 AT5G47530 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 60/181 (33%), Positives = 89/181 (49%)

Query:   135 REKKNHGALGMIGWGIILPVGAIIPRYFK---HKDPLWYYLHAIIQLVGFIFGLATVLLG 191
             R++  HG L  + WGI++P+GAII RY K     DP W+YLH   Q   +I G+A    G
Sbjct:   206 RKRNIHGILNGVSWGIMMPIGAIIARYLKVSKSADPAWFYLHVFCQSSAYIIGVAGWATG 265

Query:   192 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 251
             ++L N+        + HR +GI +  L+ +Q+ A FLRP  + K+R +WN YHH  G   
Sbjct:   266 LKLGNES--AGIQFTFHRAVGIALFCLATIQVFAMFLRPKPEHKYRVYWNIYHHTVGYSV 323

Query:   252 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW--MKKRSDKTTAPPTF 309
             +  A VN+  G+ I     +W+  Y              E  +W  + KR     +  T 
Sbjct:   324 IILAVVNVFKGLDILSPEKQWRNAYTAIIVVLGIVAVVLEGFTWYVVIKRGKAEASAKTS 383

Query:   310 Q 310
             Q
Sbjct:   384 Q 384

GO:0005886 "plasma membrane" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2130789 AT4G17280 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 56/164 (34%), Positives = 80/164 (48%)

Query:   135 REKKNHGALGMIGWGIILPVGAIIPRYF---KHKDPLWYYLHAIIQLVGFIFGLATVLLG 191
             R++  HG L  + WGI++P+GAII RY    K  DP W+Y+H   Q   +I G+A    G
Sbjct:   214 RKRNIHGILNGVSWGIMMPLGAIIARYLRVAKSADPAWFYIHVFCQASAYIIGVAGWATG 273

Query:   192 IQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLA 251
             ++L    +      S HR IGI +  L+ +Q+ A FLRP  + K R +WN YHH  G   
Sbjct:   274 LKLGG--DSPGIQYSTHRAIGIALFSLATVQVFAMFLRPKPEHKHRLYWNIYHHTIGYTI 331

Query:   252 LFFASVNIVLGIQIGYAGNEWKIGYGFXXXXXXXXXXXXETLSW 295
             +    VN+  G+ I     +WK  Y              E  +W
Sbjct:   332 IILGVVNVFKGLGILSPKKQWKNAYIGIIVVLAIVATLLEAFTW 375

GO:0005576 "extracellular region" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2160220 AT5G54830 "AT5G54830" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 41/133 (30%), Positives = 64/133 (48%)

Query:   140 HGALGMIGWGIILPVGAIIPRYFKH-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL 198
             HG +  + WGI+LP G +  RY KH K   W+ +H  +Q  G    LA V LG+ L+   
Sbjct:   689 HGFMMFLAWGILLPGGILSARYLKHIKGDGWFKIHMYLQCSG----LAIVFLGL-LFAVA 743

Query:   199 NVKNANISA-HRGIGIFILVLSILQILAFFLRPSKD------SKFRRFWNWYHHWFGRLA 251
              +   + S+ H   G   +VL+  Q +  +LRP+K       S  R  W + H   G+ A
Sbjct:   744 ELNGFSFSSTHVKFGFTAIVLACAQPVNAWLRPAKPAQGELISSKRLIWEYSHSIVGQSA 803

Query:   252 LFFASVNIVLGIQ 264
             +    V +  G++
Sbjct:   804 VVVGVVALFTGMK 816

GO:0004497 "monooxygenase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	315
cd08760	191	cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrom	5e-47
smart00665	129	smart00665, B561, Cytochrome b-561 / ferric reduct	5e-28
smart00664	148	smart00664, DoH, Possible catecholamine-binding do	1e-11
cd09631	138	cd09631, DOMON_DOH, DOMON-like domain of copper-de	7e-11
pfam03351	124	pfam03351, DOMON, DOMON domain	1e-08
pfam03188	137	pfam03188, Cytochrom_B561, Eukaryotic cytochrome b	4e-06
cd08761	183	cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytoch	3e-05
cd08554	131	cd08554, Cyt_b561, Eukaryotic cytochrome b(561)	1e-04
cd09628	169	cd09628, DOMON_SDR_2_like, DOMON domain of stromal	6e-04

>gnl|CDD|176490 cd08760, Cyt_b561_FRRS1_like, Eukaryotic cytochrome b(561), including the FRRS1 gene product

 Score =  156 bits (396), Expect = 5e-47
 Identities = 75/174 (43%), Positives = 99/174 (56%), Gaps = 4/174 (2%)

Query: 120 FDFSGGSSSVLYVSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLV 179
             F   + S +  S    K HG L  I WGI++P+GA++ RYF   DP+W+YLHA +QL+
Sbjct: 19  SPFLLPNGSSVGSSDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLL 78

Query: 180 GFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRF 239
             +  +A  +LGI L         N  AH  +GI +L L+ILQ L   LRP   SK R  
Sbjct: 79  AVLLAIAGFVLGIVLVQGGGGSLNN--AHAILGIIVLALAILQPLLGLLRPHPGSKKRSI 136

Query: 240 WNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIVLE 291
           WNW H W GR AL  A VNI LG+ +  AG    WKI YG ++AV+ L  ++LE
Sbjct: 137 WNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLILE 190

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 191

>gnl|CDD|214769 smart00665, B561, Cytochrome b-561 / ferric reductase transmembrane domain

 Score =  105 bits (263), Expect = 5e-28
 Identities = 39/129 (30%), Positives = 65/129 (50%), Gaps = 6/129 (4%)

Query: 140 HGALGMIGWGIILPVGAIIPRY--FKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNK 197
           H  L ++G+G ++    ++ R        P W+ LH ++Q++  + G+  +L     +N+
Sbjct: 2   HPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNE 61

Query: 198 LNVKNANISAHRGIGIFILVLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFF 254
             + N   S H  +G+   VL+ LQ L+ FLRP      SK+R + N YH + G  A   
Sbjct: 62  SGIAN-FYSLHSWLGLAAFVLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFIL 120

Query: 255 ASVNIVLGI 263
           A V I LG+
Sbjct: 121 AIVTIFLGL 129

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders. Length = 129

>gnl|CDD|214768 smart00664, DoH, Possible catecholamine-binding domain present in a variety of eukaryotic proteins

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 27/120 (22%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 1   MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKG 60
              +     T GWV +GFS DG MAG+  +V W +  G+  +K YY  G     V  D+ 
Sbjct: 17  AFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPG-YGPPVEDDQQ 75

Query: 61  ELPLTNVPPVVAIHGAMIYMAFQLKFE--------NHLRQQPIILAFGSRYPKHFHLTHH 112
           ++              ++   F+ K                 ++ A G     +  L +H
Sbjct: 76  DV---TDLLSATYENGVLTCRFRRKLGSNDPDDKSLLDGTVHVLWAKGP-LSPNGGLGYH 131

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press). Length = 148

>gnl|CDD|187689 cd09631, DOMON_DOH, DOMON-like domain of copper-dependent monooxygenases and related proteins

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 8/116 (6%)

Query: 2   TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIH--DK 59
           T  LSA  TTGWVG+GFS DG M G+ A+VGW +  G   +  YYL G  +  V    D 
Sbjct: 22  TFELSA-RTTGWVGIGFSPDGGMVGADAVVGWVD-GGNAYVTDYYLTGRSTPDVDGSQDL 79

Query: 60  GELPLTNVPPVVAIHGAMIY---MAFQLKFENHLRQQPIILAFGSRYPKHFHLTHH 112
             L  +    V  +  +          L   +      +I A+GS  P      H 
Sbjct: 80  TLLSGSENNGVTTLRFSRKLDTCDPTDLSITD-GTTTYVIWAYGSEDPFSLLSYHG 134

This diverse family characterizes DOMON domains found in dopamine beta-hydroxylase (DBH), monooxygenase X (MOX), and various other proteins, some of which contain DOMON domains exclusively; the family is not restricted to eukaryotes. DBH is a membrane-bound enzyme that converts dopamine to L-norepinephrine, and plays a central role in the metabolism of catecholamine neurotransmitters. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 138

>gnl|CDD|217508 pfam03351, DOMON, DOMON domain

 Score = 52.4 bits (126), Expect = 1e-08
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 10 TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNV 67
          T GWV +GFS DG M+ +  ++GW    G+  ++ YY  G   +  + D G+  LT +
Sbjct: 28 TNGWVAIGFSPDGGMSNADVVIGW-VDNGRVYVQDYYSTGGYGAPRVDDTGQQDLTLL 84

The DOMON (named after dopamine beta-monooxygenase N-terminal) domain is 110-125 residues long. It is predicted to form an all beta fold with up to 11 strands and is secreted to the extracellular compartment. The beta-strand folding produces a hydrophobic pocket which appears to bind soluble haem. This is consistent with the predominant architectures where the protein is associated with cytochromes or enzymatic domains whose activity involves redox or electron transfer reactions potentially as a direct participant in the electron transfer process. The DOMON domain superfamily, of which this is just one member, shows (1) multiple hydrophobic residues that contribute to the hydrophobic core of the strands of the beta-sandwich, and small residues found at the boundaries of strands and loops, (2) a strongly conserved charged residue (usually arginine/lysine) at the end of strand 9, which possibly stabilises the loop between 9 and 10, and (3) a polar residue (usually histidine, lysine or arginine), that interacts or coordinates with ligands. The suggested superfamily includes both haem- and sugar-binding members: the haem-binding families being the ethyl-Benzoate dehydrogenase family EB_dh, pfam09459, the cellobiose dehydrogenase family CBDH and this family, and the sugar-binding families being the xylanases, CBM_4_9, pfam02018. The common feature of the superfamily is the 11-beta-strand structure, although the first and eleventh strands are not well conserved either within families or between families. Length = 124

>gnl|CDD|217413 pfam03188, Cytochrom_B561, Eukaryotic cytochrome b561

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 172 LHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQIL---AFFL 228
           LH ++ L+  I G+  +L   + +N+L + +   S H  +G+  ++L +LQ L   A FL
Sbjct: 37  LHWVLHLLALILGVVGLLAVFKFHNELGIPHFY-SLHSWLGLTTVILFLLQWLSGFALFL 95

Query: 229 RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 263
            P      R     +H +FG +    A V  +LG+
Sbjct: 96  FPGLSRSIRSLLLPWHVFFGLVIFVLAIVTALLGL 130

Cytochrome b561 is a secretory vesicle-specific electron transport protein. It is an integral membrane protein, that binds two heme groups non-covalently. This is a eukaryotic family. Members of the 'prokaryotic cytochrome b561' family can be found in Pfam: PF01292. Length = 137

>gnl|CDD|176491 cd08761, Cyt_b561_CYB561D2_like, Eukaryotic cytochrome b(561), including the CYB561D2 gene product

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 33/126 (26%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 172 LHAIIQLVGFIFGLATVLLGIQLYNK-LNVKNANISAHRGIGIFILVLSILQIL---AFF 227
           LH I+QL+  +  LA   L    YNK  N K    S H  +G+  ++L +LQ L   A  
Sbjct: 60  LHWILQLLALLCILAG--LVAIYYNKERNGKPHFTSWHGILGLVTVILIVLQALGGLALL 117

Query: 228 LRPSK---DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVL 284
             P     +SK ++    YH   G +A       +VLG++  +          + LA+ +
Sbjct: 118 YPPGLRRGESKAKKLK-KYHRLSGYVAYLLGLATLVLGLETRWFSKNVTHVALWYLALAV 176

Query: 285 LAVIVL 290
              +  
Sbjct: 177 ALALAG 182

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. Length = 183

>gnl|CDD|176489 cd08554, Cyt_b561, Eukaryotic cytochrome b(561)

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 4/96 (4%)

Query: 171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQI---LAFF 227
            LHAI+ L+ F+ GL  +L     +N   + N   S H  +G+  ++L +LQ       F
Sbjct: 37  LLHAILHLLAFVLGLVGLLAVFLFHNAGGIANLY-SLHSWLGLATVLLFLLQFLSGFVLF 95

Query: 228 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI 263
           L P     +R     +H +FG      A   I+LGI
Sbjct: 96  LLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI 131

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous. Length = 131

>gnl|CDD|187686 cd09628, DOMON_SDR_2_like, DOMON domain of stromal cell-derived receptor 2 (ferric chelate reductase 1) and related proteins

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 12/45 (26%), Positives = 21/45 (46%)

Query: 10 TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQ 54
            G+V +GFS D  M     +    +  G+  ++  Y  GT ++Q
Sbjct: 49 DDGYVAVGFSDDKKMGDDDVVECVRDAGGRVEVRHSYNPGTGNTQ 93

Stromal cell-derived receptor 2 (or ferric chelate reductase 1) reduces Fe(3+) to Fe(2+) ahead of iron transport from the endosome to the cytoplasm. This transmembrane protein is a member of the cytochrome b561 family and contains a DOMON domain which may bind to heme or another ligand. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases. Length = 169

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	315
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	100.0
KOG4293	403	consensus Predicted membrane protein, contains DoH	99.96
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	99.94
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	99.91
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	99.91
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	99.9
PLN02351	242	cytochromes b561 family protein	99.9
PLN02810	231	carbon-monoxide oxygenase	99.88
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	99.88
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	99.88
PLN02680	232	carbon-monoxide oxygenase	99.88
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	99.88
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	99.88
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	99.87
KOG1619	245	consensus Cytochrome b [Energy production and conv	99.83
smart00664	148	DoH Possible catecholamine-binding domain present	99.76
PF03351	124	DOMON: DOMON domain; InterPro: IPR005018 The DOMON	99.67
cd00241	184	CDH_cytochrome Cellobiose dehydrogenase (Cellobios	99.35
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	99.34
PF04526	101	DUF568: Protein of unknown function (DUF568); Inte	98.44
KOG3568	603	consensus Dopamine beta-monooxygenase [Amino acid	98.26
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	97.17
cd08554	131	Cyt_b561 Eukaryotic cytochrome b(561). Cytochrome	96.69
PF03188	137	Cytochrom_B561: Eukaryotic cytochrome b561; InterP	96.48
smart00665	129	B561 Cytochrome b-561 / ferric reductase transmemb	96.47
cd08760	191	Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561),	96.41
cd08761	183	Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561	96.3
cd08763	143	Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB5	96.24
cd08764	214	Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt	95.96
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	95.63
PLN02680	232	carbon-monoxide oxygenase	95.22
cd08766	144	Cyt_b561_ACYB-1_like Plant cytochrome b(561), incl	95.05
COG2717	209	Predicted membrane protein [Function unknown]	94.04
cd08762	179	Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB	93.75
cd08765	153	Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBR	92.16
PF13172	34	PepSY_TM_1: PepSY-associated TM helix	91.68
PF10067	103	DUF2306: Predicted membrane protein (DUF2306); Int	91.39
PLN02351	242	cytochromes b561 family protein	91.06
PF10348	105	DUF2427: Domain of unknown function (DUF2427); Int	90.82
PLN02810	231	carbon-monoxide oxygenase	90.67
PF13301	175	DUF4079: Protein of unknown function (DUF4079)	90.63
KOG1619	245	consensus Cytochrome b [Energy production and conv	90.29
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	89.9
TIGR02125	211	CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochro	89.2
PF00033	188	Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; I	88.89
COG3038	181	CybB Cytochrome B561 [Energy production and conver	88.69
PRK11513	176	cytochrome b561; Provisional	88.05
PF04238	133	DUF420: Protein of unknown function (DUF420); Inte	86.72
PF13706	37	PepSY_TM_3: PepSY-associated TM helix	86.37
PF01794	125	Ferric_reduct: Ferric reductase like transmembrane	85.99
PF13630	76	SdpI: SdpI/YhfL protein family	84.04
PF01292	182	Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPr	83.67
COG5658	204	Predicted integral membrane protein [Function unkn	83.36
PF10951	347	DUF2776: Protein of unknown function (DUF2776); In	82.89
TIGR01583	204	formate-DH-gamm formate dehydrogenase, gamma subun	82.24
PRK10179	217	formate dehydrogenase-N subunit gamma; Provisional	80.96
PRK05419	205	putative sulfite oxidase subunit YedZ; Reviewed	80.83

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=100.00  E-value=2.1e-33  Score=243.93  Aligned_cols=157  Identities=46%  Similarity=0.846  Sum_probs=145.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG  212 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG  212 (315)
                      .+..+++||++|++||++++|+|++++||++..++.||++|+.+|+++++++++|+++++...  ....+++++.|+++|
T Consensus        32 ~~~~~~~Hg~lm~iaw~~l~p~gil~ar~~~~~~~~~~~~H~~~q~~~~~~~i~g~~~~~~~~--~~~~~~~~~~H~~lG  109 (191)
T cd08760          32 SDTLIKAHGVLMAIAWGILMPIGALLARYFLLGDPVWFYLHAGLQLLAVLLAIAGFVLGIVLV--QGGGGSLNNAHAILG  109 (191)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCCCCcCcchhhh
Confidence            577899999999999999999999999998666789999999999999999999999999875  122247999999999


Q ss_pred             HHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCC--CcchhhHHHHHHHHHHHHHHH
Q 021260          213 IFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAG--NEWKIGYGFLLAVVLLAVIVL  290 (315)
Q Consensus       213 ~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~--~~~~~~y~~~~~~~~~~~~~l  290 (315)
                      +++++++++|+++|++||.+.++.|+.|+++|+++|++++++|++|+.+|+.+.+.+  +.+.+.|++++++++++++++
T Consensus       110 l~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~~G~~~~~l~~v~i~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  189 (191)
T cd08760         110 IIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRWLGRAALILAIVNIFLGLDLAGAGTPKAWKIAYGVVVAVLALVYLIL  189 (191)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999988888999999999999999999999999999999987  778899999999999999998


Q ss_pred             H
Q 021260          291 E  291 (315)
Q Consensus       291 e  291 (315)
                      |
T Consensus       190 ~  190 (191)
T cd08760         190 E  190 (191)
T ss_pred             c
Confidence            7

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG4293 consensus Predicted membrane protein, contains DoH and Cytochrome b-561/ferric reductase transmembrane domains [Signal transduction mechanisms]

Probab=99.96  E-value=4.3e-30  Score=245.77  Aligned_cols=294  Identities=34%  Similarity=0.644  Sum_probs=234.2

Q ss_pred             EEEEEecCCCCEEEEEeCCCC-CCCCCcEEEEEEcC-CCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeC---c
Q 021260            2 TIILSAIYTTGWVGMGFSKDG-MMAGSSAMVGWFNK-KGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHG---A   76 (315)
Q Consensus         2 ~f~ls~~~~~gWvAiGfs~~~-~M~gsd~~i~~~~~-~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~---g   76 (315)
                      ++...++....|+++++++.+ .|.++.+++.|.++ +|...+..++..++.+ ...+.....++.+.+......+   .
T Consensus        61 ~i~~~~~~~~~w~~~~~~p~~t~m~~~~~~va~~~~~~g~~~~~t~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~  139 (403)
T KOG4293|consen   61 SIAFSAPLSSAWVAWAINPTGTGMVGSRALVAYAGSSSGATTVKTYVILGYSP-SLVPALLSFTLGNVRAECNLRSSSPI  139 (403)
T ss_pred             EEEEecCCcccccccccCCccccccccceeeeeeccccchhhceeeeecccch-hhcccccceeeecCcchhhccCCCCc
Confidence            456677755569999999976 79999999999887 5778888888887775 4444333333333222112334   6


Q ss_pred             EEEEEEEEecCCCCCcccEEEeecCCCCCCCCccccCCCC-----ceeEeecC--CCccccc------ccchhhhhhHHH
Q 021260           77 MIYMAFQLKFENHLRQQPIILAFGSRYPKHFHLTHHVDKR-----TIMFDFSG--GSSSVLY------VSSREKKNHGAL  143 (315)
Q Consensus        77 ~i~~~f~r~~~~~~~~~~~I~A~G~~~~s~~~l~~H~~~g-----s~~ldl~~--G~~~~~~------~~~~~~~~Hg~l  143 (315)
                      .++++++.+.. +...+..+|+.|+.......+.+|+.++     ...+|++.  |..+..+      ....+...||++
T Consensus       140 ~if~~~~l~~~-~~~~~~~~w~~~~~~~~g~~~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~hgil  218 (403)
T KOG4293|consen  140 GIFASFKLAGA-NGGKYSAVWQVGPTGSGGGRPKRHKLSGSNLASVTSLDLTSDIGELSITSEGNFNSSGLKLRMTHGIL  218 (403)
T ss_pred             eEEEEEEeecC-CCceeEEEEEccCCccCCCCCccCccccCCccceeecccccccccccccccCcccCcchhccccHHHH
Confidence            88999988841 2678999999998753356778887643     23455554  3332211      244555669999


Q ss_pred             HHHHHHHHHhhhhhhhhhccCC---CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHH
Q 021260          144 GMIGWGIILPVGAIIPRYFKHK---DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSI  220 (315)
Q Consensus       144 m~~aw~~l~p~gil~aR~~k~~---~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~  220 (315)
                      +.++|+++.|+|++.+||+|..   .+.||++|+.+|..++++.+.|+..+....++...  ...+.|..+|+..+++.+
T Consensus       219 ~~~sw~il~p~g~i~ary~~~~~~~~~~Wfy~H~~~~~~~~~~~~~~~~~g~~~~~~s~~--~~~~~h~~~G~~~~~l~~  296 (403)
T KOG4293|consen  219 NALSWGILFPAGAIIARYLRQKPSGDPTWFYIHRACQFTGFILGVAGFVDGLKLSNESDG--TVYSAHTDLGIILLVLAF  296 (403)
T ss_pred             hhhhhheeccccceeEEEecccCCCCcchhhhhhhheeeEEEEEeeeeeeeEEEccCCCc--eeeeecccchhHHHHHHH
Confidence            9999999999999999999988   78999999999999988888898888877765332  567999999999999999


Q ss_pred             HHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcch-hhHHHHHHHHHHHHHHHHHHHHhhhC
Q 021260          221 LQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWK-IGYGFLLAVVLLAVIVLETLSWMKKR  299 (315)
Q Consensus       221 ~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~-~~y~~~~~~~~~~~~~le~~~~~~~~  299 (315)
                      +|++..++||.++++.|++||++|+..||..+++|++|++.|+.+.+....|. ++|+...+...++.+++|..+|+..-
T Consensus       297 lQ~~~~l~Rp~~~~k~R~~~nwyH~~~g~~~~~~~~~~i~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~le~~~~~~~~  376 (403)
T KOG4293|consen  297 LQPLALLLRPLPESKIRRYWNWYHHLVGRLSIILGIVNIFDGLELLYPGQSWIKLGYGSILAVLGLIAVILEILSWRITI  376 (403)
T ss_pred             HHHHHHHhcCCcccCceeccceeeeecCcceeeehhhHHhhhHhhhcCCCceEEeeeeeEEEEechhhhhhhhheeeeee
Confidence            99999999999999999999999999999999999999999999999988887 89998888889999999998886643

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=99.94  E-value=6e-27  Score=190.85  Aligned_cols=124  Identities=31%  Similarity=0.539  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhh-cc-CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHH
Q 021260          139 NHGALGMIGWGIILPVGAIIPRY-FK-HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFIL  216 (315)
Q Consensus       139 ~Hg~lm~~aw~~l~p~gil~aR~-~k-~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~  216 (315)
                      +||++|.++|++++|+|++++|+ .+ ..++.|+++|+.+|+++++++++|+++++...++.+ +++++++|+++|++++
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~~~-~~~~~s~H~~lGl~~~   79 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLSKPTWFLLHVVLQILALVLGVIGLLAIFISHNESG-IANFYSLHSWLGLAAF   79 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCCccchhHHHHHHHH
Confidence            69999999999999999999997 33 346799999999999999999999999998766543 2489999999999999


Q ss_pred             HHHHHHHHhheeccCCC---CCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260          217 VLSILQILAFFLRPSKD---SKFRRFWNWYHHWFGRLALFFASVNIVLGI  263 (315)
Q Consensus       217 ~l~~~Q~~~g~~r~~~~---~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl  263 (315)
                      ++.++|++.|++++.++   .+.|+.++++|+++|++++++|++|+.+|+
T Consensus        80 ~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~~~~lG~  129 (129)
T smart00665       80 VLAGLQWLSGFLRPLPPGLPSKYRSYLNPYHRFVGLAAFILAIVTIFLGL  129 (129)
T ss_pred             HHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99999999999887765   677899999999999999999999999985

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=99.91  E-value=2e-24  Score=177.46  Aligned_cols=133  Identities=18%  Similarity=0.199  Sum_probs=119.8

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG  212 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG  212 (315)
                      +..++++|+.||.+++.++++.||++.|..|..++.+..+|+.+|.+++++.++|+..++...++.+. +|++|+|+|+|
T Consensus         4 ~~~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~-~~~~SlHSwlG   82 (144)
T cd08766           4 KGLIFNVHPVLMVIGFIFLAGEAILAYKTVPGSREVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGI-PNLYSLHSWLG   82 (144)
T ss_pred             CcceeeccHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCc-cccccHHHHHH
Confidence            56789999999999999999999999999887777889999999999999999999999887766443 58999999999


Q ss_pred             HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ++++++..+|.+.|+   +.|....+.|+...++|+++|+++++++++++.+|+.+.
T Consensus        83 l~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~~~la~~t~~lGl~ek  139 (144)
T cd08766          83 IGTISLFGLQWLFGFVTFWFPGASRNTRAALLPWHVFLGLAIYYLAIATAETGLLEK  139 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999995   478765566888889999999999999999999999864

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=99.91  E-value=4e-24  Score=175.88  Aligned_cols=127  Identities=30%  Similarity=0.508  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHHHhhhhhhhhhcc--C-CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHH
Q 021260          139 NHGALGMIGWGIILPVGAIIPRYFK--H-KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI  215 (315)
Q Consensus       139 ~Hg~lm~~aw~~l~p~gil~aR~~k--~-~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~  215 (315)
                      +|+++|.+||++++|.|++++|+.+  . .++.|+++|+.+|.+++++.++|+++++...+..+ .+|++++|+++|+++
T Consensus         1 ~H~~lm~~~f~~l~~~~il~~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~H~~lG~~~   79 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILAARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFINKNRNG-KPHFKSWHSILGLAT   79 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-CCCCCCchhhhhHHH
Confidence            6999999999999999999999732  2 35789999999999999999999999987665433 358999999999999


Q ss_pred             HHHHHHHHHhheec---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          216 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       216 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ++++++|++.|+++   |..+.+.|+.++++|+++|++++++|++|+.+|+...
T Consensus        80 ~~l~~~Q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~G~~~~  133 (137)
T PF03188_consen   80 FVLALLQPLLGFFRFFMPGLPRKRRPIWNKWHRWLGYLIYVLAIATIFLGLTEK  133 (137)
T ss_pred             HHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999765   4455667888999999999999999999999999543

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=99.90  E-value=9.7e-24  Score=172.38  Aligned_cols=126  Identities=27%  Similarity=0.386  Sum_probs=111.2

Q ss_pred             hhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHH
Q 021260          137 KKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFI  215 (315)
Q Consensus       137 ~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~  215 (315)
                      +++|+++|.++|++++|.|++++|++|.. ++.|+++|+.+|++++++.++|+++++...++.+ .+|+++.|+++|+++
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~~~~-~~h~~s~Hs~lGl~~   80 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLTKRALKLLHAILHLLAFVLGLVGLLAVFLFHNAGG-IANLYSLHSWLGLAT   80 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-cccchhHHHHHHHHH
Confidence            57999999999999999999999998764 4588999999999999999999999998765432 358999999999999


Q ss_pred             HHHHHHHHHhheec---cCCCCCCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260          216 LVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGI  263 (315)
Q Consensus       216 ~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl  263 (315)
                      +++.++|++.|+.+   |.+..+.|+.++++|+++|+++++++++|+++|+
T Consensus        81 ~~l~~~q~~~G~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~la~~t~~~G~  131 (131)
T cd08554          81 VLLFLLQFLSGFVLFLLPLLRLSYRSSLLPFHRFFGLAIFVLAIATILLGI  131 (131)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999765   4444446889999999999999999999999985

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PLN02351 cytochromes b561 family protein

Probab=99.90  E-value=3.9e-23  Score=180.97  Aligned_cols=130  Identities=16%  Similarity=0.098  Sum_probs=113.1

Q ss_pred             hhh-hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhH
Q 021260          135 REK-KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI  213 (315)
Q Consensus       135 ~~~-~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~  213 (315)
                      ..+ ++|++||.++|++|.+.||+++|.+|..++.|+.+|+.+|.+|+++.++|+...+  .+..+..+|+++.|+|+|+
T Consensus        48 ~iffn~HP~lMviGfi~L~geAILvYR~~~~~~k~~K~lH~~Lh~~Ali~~vvGl~a~f--h~~~~~i~nlySLHSWlGl  125 (242)
T PLN02351         48 LVYAVLHPLLMVIGFILISGEAILVHRWLPGSRKTKKSVHLWLQGLALASGVFGIWTKF--HGQDGIVANFYSLHSWMGL  125 (242)
T ss_pred             ceeecccHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHH--hcccCCccchhHHHHHHHH
Confidence            355 7999999999999999999999999877677999999999999999999999833  2322212589999999999


Q ss_pred             HHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          214 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       214 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ++++++.+|.+.|+   +.|......|....++|.++|+++++++++++.+|+.+.
T Consensus       126 ~tv~Lf~lQwv~Gf~~F~~P~~~~~~Ra~~~P~Hv~~Gl~if~LaiaTa~lGl~EK  181 (242)
T PLN02351        126 ICVSLFGAQWLTGFMSFWHRGEMRTTRTTVLPWHVFLGLYTYGLAVATAETGLLEK  181 (242)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999995   457766667888899999999999999999999998863

>PLN02810 carbon-monoxide oxygenase

Probab=99.88  E-value=3.9e-22  Score=173.33  Aligned_cols=133  Identities=21%  Similarity=0.209  Sum_probs=121.1

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG  212 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG  212 (315)
                      ++..+++|++||.++++++...||++.|.++..++.+..+|+.+|.+++++.++|+...|...++.+. +|++|+|+|+|
T Consensus        43 ~~~~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~~i-~nlySLHSWlG  121 (231)
T PLN02810         43 KNLIFNLHPVLMLIGLIIIGGEAIMSYKSLPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNESGI-ANLYSLHSWLG  121 (231)
T ss_pred             CCceeeehHHHHHHHHHHHhhHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHhccccCC-CceeeHHHHHH
Confidence            45689999999999999999999999999887677889999999999999999999999988776543 68999999999


Q ss_pred             HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ++++++..+|.+.|+   +.|+...+.|....++|.++|..+++++++++.+|+.+.
T Consensus       122 l~tv~Lf~lQw~~Gf~~Fl~P~~~~~~R~~~lP~Hv~~Gl~if~LAiata~lGi~EK  178 (231)
T PLN02810        122 IGIISLYGIQWIYGFIVFFFPGGSTNLRSGSLPWHVLFGLFVYILAVGNAALGFLEK  178 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999996   578877777888889999999999999999999998863

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=99.88  E-value=1.8e-22  Score=175.77  Aligned_cols=133  Identities=22%  Similarity=0.277  Sum_probs=116.2

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheecccc-ccCCCCcccchh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL-NVKNANISAHRG  210 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~-~~~~~~~~~H~~  210 (315)
                      +...+++|+.+|.+++.+++..|+++.|.++.. ++.+..+|+.+|.+|+++.++|+..++...++. ++.+|++|.|+|
T Consensus        20 ~~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw   99 (214)
T cd08764          20 PGLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTRKKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW   99 (214)
T ss_pred             CCceEeecHHHHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence            345799999999999999999999999998853 446778999999999999999999988776654 234689999999


Q ss_pred             hhHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260          211 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       211 iG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      +|++++++..+|.+.|+   +.|......|+...++|+++|+++++++++++.+|+.+
T Consensus       100 lGl~t~~L~~lQ~~~Gf~~fl~P~~~~~~r~~~~p~H~~~Gl~~fvLaiaT~~lGl~e  157 (214)
T cd08764         100 LGLTAVILFSLQWVGGFVSFLFPGLPETLRAAYLPLHVFFGLFIFVLAVATALLGITE  157 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999996   46776556677788899999999999999999999976

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=99.88  E-value=2e-22  Score=173.82  Aligned_cols=132  Identities=20%  Similarity=0.208  Sum_probs=112.6

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhcc----CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccc
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFK----HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAH  208 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k----~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H  208 (315)
                      ...++++|+++|.++|++++|+|++..|...    ..++.|+++|+.+|.+++++.++|+.+++...++.+ .+|+++.|
T Consensus        17 ~~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~~~~~~-~~hf~s~H   95 (183)
T cd08761          17 GTSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYNKERNG-KPHFTSWH   95 (183)
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCccchh
Confidence            3568999999999999999999999765322    135688999999999999999999999887655433 35899999


Q ss_pred             hhhhHHHHHHHHHHHHhhee---ccCCC--CCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260          209 RGIGIFILVLSILQILAFFL---RPSKD--SKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       209 ~~iG~~~~~l~~~Q~~~g~~---r~~~~--~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      +++|+++++++++|++.|+.   +|...  .++|+.++++|+++|++++++|++|+.+|++.
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~~~~~~~~~~~~~r~~~~~~H~~~G~~~~~l~~~t~~lGl~~  157 (183)
T cd08761          96 GILGLVTVILIVLQALGGLALLYPPGLRRGESKAKKLKKYHRLSGYVAYLLGLATLVLGLET  157 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHhhHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999974   33332  35788899999999999999999999999988

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PLN02680 carbon-monoxide oxygenase

Probab=99.88  E-value=7.2e-22  Score=172.96  Aligned_cols=133  Identities=21%  Similarity=0.205  Sum_probs=119.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIG  212 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG  212 (315)
                      +..++++|++||.+++.++...+|+..|..+..++.+..+|+.+|.+++++.++|+...++..++.+. +|++|+|+|+|
T Consensus        43 ~~~~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~~~-~nfySlHSWlG  121 (232)
T PLN02680         43 KDLIFNVHPVLMVIGLVLLNGEAMLAYKTVPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEKGI-DNFYSLHSWLG  121 (232)
T ss_pred             CcceEechHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cccccHHHHHH
Confidence            45689999999999999999999999998887777889999999999999999999998888775443 68999999999


Q ss_pred             HHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          213 IFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       213 ~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      +++++++.+|.+.|+   +.|+...+.|+...++|+++|+++++++++++.+|+.+.
T Consensus       122 l~t~iL~~lQ~~~Gf~~f~~P~~~~~~R~~~~p~H~~~G~~if~LaiaT~~lG~~Ek  178 (232)
T PLN02680        122 LACLFLFSLQWAAGFVTFWYPGGSRNSRASLLPWHVFFGIYIYALAVATATTGILEK  178 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999995   568766666777889999999999999999999998763

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=99.88  E-value=2.3e-22  Score=169.34  Aligned_cols=131  Identities=22%  Similarity=0.249  Sum_probs=116.7

Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260          135 REKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  211 (315)
Q Consensus       135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i  211 (315)
                      +.+++|+++|.+++++|..+||++.|..++   .+..|+.+|+.+|.+++++.++|+..++...++.+. +|++|.|+|+
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~~~-~nlySlHSWl  111 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVHHT-ANLYSLHSWV  111 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCc-cchhhHHHHH
Confidence            489999999999999999999999997653   345689999999999999999999999988776543 6899999999


Q ss_pred             hHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          212 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       212 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      |+++++++.+|.+.|+   +.|....+.|...+++|+++|+++++++++++.+|+.+.
T Consensus       112 Gl~t~~Lf~lQ~~~Gf~~f~~p~~~~~~ra~~~p~H~~~G~~if~Laiat~~lGl~ek  169 (179)
T cd08762         112 GICTVALFTCQWVMGFTSFLLPWAPMWLRALVKPIHVFFGAMILVLSIASCISGINEK  169 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   456666667888899999999999999999999999864

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=99.88  E-value=2.2e-22  Score=166.27  Aligned_cols=132  Identities=22%  Similarity=0.250  Sum_probs=116.6

Q ss_pred             chhhhhhHHHHHHHHHHHHhhhhhhhhhccC---CCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchh
Q 021260          134 SREKKNHGALGMIGWGIILPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRG  210 (315)
Q Consensus       134 ~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~---~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~  210 (315)
                      ...+++|+.||.+++.++...+|++.|..+.   .++.+..+|+.+|.+++++.++|+...+...++.+. +|++|+|+|
T Consensus         9 ~~~Fn~HPlLm~~Gfi~l~geAiL~yr~~~~~~~~k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~-~~fySlHSw   87 (153)
T cd08765           9 AAEFNWHPVLMVIGFIFIQGIAIIVYRLPWTWKCSKLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI-PNMYSLHSW   87 (153)
T ss_pred             CCeeechHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-CccccHHHH
Confidence            4589999999999999999999999986542   356788999999999999999999999887765443 689999999


Q ss_pred             hhHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          211 IGIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       211 iG~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      +|++++++..+|.+.|+   +.|......|+...++|+++|+++++|+++++.+|+.+.
T Consensus        88 lGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p~H~~~G~~i~~Lai~t~~lG~~ek  146 (153)
T cd08765          88 VGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMPLHVYSGLFIFGTVIATALMGITEK  146 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999995   467766667888999999999999999999999999864

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=99.87  E-value=9.9e-22  Score=161.37  Aligned_cols=131  Identities=20%  Similarity=0.271  Sum_probs=116.6

Q ss_pred             hhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhH
Q 021260          135 REKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGI  213 (315)
Q Consensus       135 ~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~  213 (315)
                      .++++|+.+|.+++.+++..++++.|..+.. ++.+.++|+.+|.+++++.++|+...+...++.+ .+|++|.|+|+|+
T Consensus         5 ~~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~-~~hf~SlHswlGl   83 (143)
T cd08763           5 LQFNVHPLCMVLGLVFLCGEALLVYRVFRNETKRSTKILHGLLHIMALVISLVGLVAVFDYHQANG-YPDMYSLHSWCGI   83 (143)
T ss_pred             cccchhHHHHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC-CCccccHHHHHHH
Confidence            4899999999999999999999999987743 4567899999999999999999999987766543 3689999999999


Q ss_pred             HHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          214 FILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       214 ~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      +++++..+|.+.|+   +.|....+.|..++++|+++|+++++++++++.+|+.+.
T Consensus        84 ~t~~L~~lQ~~~G~~~f~~P~~~~~~r~~~~p~H~~~G~~~f~la~~t~~lG~~ek  139 (143)
T cd08763          84 LTFVLYFLQWLIGFSFFLFPGASFTLRSQYKPLHEFFGRALFLSSVGTSLLGLTEK  139 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999995   467766667899999999999999999999999999763

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=99.83  E-value=1.1e-20  Score=163.89  Aligned_cols=133  Identities=19%  Similarity=0.275  Sum_probs=119.5

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  211 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i  211 (315)
                      .++.+++|+++|+++|+++...++++.|.+|.. ++.-+-+|..+|+++++++++|+...|...+..+. .+++|.|+|+
T Consensus        51 ~~~~fnlHP~lMviGfI~l~GeAiL~YR~~r~~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~i-~NfySLHSWl  129 (245)
T KOG1619|consen   51 PNKEFNLHPVLMVIGFIYLQGEAILIYRVFRYTSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVGI-ANFYSLHSWL  129 (245)
T ss_pred             cchhcCcchHHHHHHHHHhccceeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc-cceeeHHHHH
Confidence            467999999999999999999999999997763 45567899999999999999999999988776553 4799999999


Q ss_pred             hHHHHHHHHHHHHhhe---eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          212 GIFILVLSILQILAFF---LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       212 G~~~~~l~~~Q~~~g~---~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      |+.++++..+|.+.||   +.|....+.|....++|+.+|..+++++++|+.+|+.+.
T Consensus       130 Gl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP~H~~~Gl~~f~lai~ta~~Gl~ek  187 (245)
T KOG1619|consen  130 GLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMPWHVFLGLAIFILAIVTALTGLLEK  187 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999996   467777788999999999999999999999999999654

>smart00664 DoH Possible catecholamine-binding domain present in a variety of eukaryotic proteins

Probab=99.76  E-value=1.2e-17  Score=139.06  Aligned_cols=120  Identities=25%  Similarity=0.360  Sum_probs=93.7

Q ss_pred             CEEEEEecC-CCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEE
Q 021260            1 MTIILSAIY-TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIY   79 (315)
Q Consensus         1 i~f~ls~~~-~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~   79 (315)
                      |+|+++++. +.||+|||||++++|.|+|+++||.+++|.+.+.++|++|+..|..+..++ +... .  .....+|.++
T Consensus        16 v~~~l~~~~~~~gwvaiGfs~~~~M~~~d~vv~~~~~~g~~~v~d~~~~~~~~~~~d~~~~-~~~~-~--~~~~~~g~~~   91 (148)
T smart00664       16 IAFELSGPTSTNGWVAIGFSPDGQMAGADVVVAWVDNNGRVTVKDYYTPGYGPPVEDDQQD-VTDL-L--SATYENGVLT   91 (148)
T ss_pred             EEEEEEEecCCCCEEEEEECCCCCcCCCCEEEEEEcCCCCEEEEEEEcCCCCCCCcCcccc-cccc-e--eEEEECCEEE
Confidence            589999973 289999999999999999999999987799999999999998876444333 3221 0  2368899999


Q ss_pred             EEEEEecCC--------CCCcccEEEeecCCCCCCCCccccCC--CCceeEeecCC
Q 021260           80 MAFQLKFEN--------HLRQQPIILAFGSRYPKHFHLTHHVD--KRTIMFDFSGG  125 (315)
Q Consensus        80 ~~f~r~~~~--------~~~~~~~I~A~G~~~~s~~~l~~H~~--~gs~~ldl~~G  125 (315)
                      |+|+|+.+.        .+++++++||.|+.. .++.+.+|+.  .+..++++..+
T Consensus        92 ~~f~R~l~t~d~~d~~~~~~~~~~i~a~G~~~-~~~~~~~H~~~~~~~~~i~~~~~  146 (148)
T smart00664       92 CRFRRKLGSNDPDDKSLLDGTVHVLWAKGPLS-PNGGLGYHDFSLKSTKKVCLSSC  146 (148)
T ss_pred             EEEEEEccCCCccccccCCCeEEEEEEECCCC-CCCCeeeccccccCceEEEeccC
Confidence            999998752        245889999999832 2567899986  46667887764

A predominantly beta-sheet domain present as a regulatory N-terminal domain in dopamine beta-hydroxylase, mono-oxygenase X and SDR2. Its function remains unknown at present (Ponting, Human Molecular Genetics, in press).

>PF03351 DOMON: DOMON domain; InterPro: IPR005018 The DOMON domain is an 110-125 residue long domain which has been identified in the physiologically important enzyme dopamine beta-monooxygenase and in several other secreted and transmembrane proteins from both plants and animals

Probab=99.67  E-value=5.5e-16  Score=124.89  Aligned_cols=95  Identities=25%  Similarity=0.489  Sum_probs=77.8

Q ss_pred             CEEEEEecCC-CCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEE-eeccccccccCC-CCCccccCCCceEEEeCcE
Q 021260            1 MTIILSAIYT-TGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYY-LQGTRSSQVIHD-KGELPLTNVPPVVAIHGAM   77 (315)
Q Consensus         1 i~f~ls~~~~-~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~-~~g~~~~~~~~~-~~~l~~~~~s~~~~~~~g~   77 (315)
                      |+|+|+++.. .||+|||||++++|.++|+++|+.+ +|.+.+.++| ..++.+|..+.+ +.++.+..    ...+++.
T Consensus        18 i~~~l~~~~~~~~w~aiGfs~~~~M~~~Dvv~~~~~-~~~~~v~d~~~~~~~~~p~~d~~~~~~~~~~~----~~~~~g~   92 (124)
T PF03351_consen   18 IEFELTGPANTNGWVAIGFSDDGGMGGSDVVVCWVD-DGKVYVQDYYSTGGYGPPTVDDQGSQDIQLLS----GSYSNGT   92 (124)
T ss_pred             EEEEEEeccCCCCEEEEEEccccCCCCCcEEEEEEc-CCceeEEEeeccCcccceeeccccCCcEEEEE----EEEECCE
Confidence            5799998743 8999999999889999999999998 6999999999 888888877643 23355433    2578999


Q ss_pred             EEEEEEEecCC---------CCCcccEEEeec
Q 021260           78 IYMAFQLKFEN---------HLRQQPIILAFG  100 (315)
Q Consensus        78 i~~~f~r~~~~---------~~~~~~~I~A~G  100 (315)
                      ++|+|+|+...         .+.++++|||+|
T Consensus        93 ~~~~F~R~l~t~d~~d~~l~~~~~~~~i~A~G  124 (124)
T PF03351_consen   93 TTCSFTRPLNTGDSQDYDLDSNGTYYVIWAYG  124 (124)
T ss_pred             EEEEEEEEccCCCCCccEecCCCcEEEEEEeC
Confidence            99999998652         367889999987

It has been named after DOpamine beta-MOnooxygenase N-terminal domain. The DOMON domain can be found in one to four copies and in association with other domains, such as the Cu-ascorbate dependent monooxygenase domain, the epidermal growth factor domain, the trypsin inhibitor-like domain (TIL), the SEA domain and the Reelin domain. The architectures of the DOMON domain proteins strongly suggest a function in extracellular adhesion []. The sequence conservation is predominantly centred around patches of hydrophobic residues. The secondary structure prediction of the DOMON domain points to an all-beta-strand fold with seven or eight core strands supported by a buried core of conserved hydrophobic residues. There is a chraracteristic motif with two small positions (Gly or Ser) corresponding to a conserved turn immediately C-terminal to strand three. It has been proposed that the DOMON domain might form a beta-sandwich structure, with the strands distributed into two beta sheets as is seen in many extracellular adhesion domains such as the immunoglobulin, fibronectin type III, cadherin and PKD domains [].

>cd00241 CDH_cytochrome Cellobiose dehydrogenase (CellobioseDH), cytochrome domain; This extracellular fungal oxidoreductase degrades both lignin and cellulose

Probab=99.35  E-value=1.4e-11  Score=105.40  Aligned_cols=121  Identities=19%  Similarity=0.311  Sum_probs=86.5

Q ss_pred             CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260            1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM   80 (315)
Q Consensus         1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~   80 (315)
                      +.|+|++|.+.||+|+|++  ++|.++.++|.|++++ +++++.|+.+||.+|++...+-.+++.+++   ..++++++.
T Consensus        42 ~i~qi~aP~~~gW~gls~G--g~M~~~~L~vaw~~g~-~Vt~S~R~atg~~~P~~y~g~a~~t~L~gs---~vn~t~~t~  115 (184)
T cd00241          42 FIGELVAPRASGWIGLALG--GAMTNSLLLVAWPNGN-QIVSSTRYATGYTLPDAYTGPATITQLPSS---SVNSTHWKL  115 (184)
T ss_pred             EEEEEeCcCCCCeEEEeec--ccCCCCeEEEEEcCCC-eEEEeEEEecCccCCCccCCCceEEECCCC---cEeCCEEEE
Confidence            4689999988999999996  6999999999999764 599999999999998664332235544433   356676555


Q ss_pred             EEE----EecC-----CCCCcccEEEeecC---CCCC--CCCccccCCCCceeEeecCCCc
Q 021260           81 AFQ----LKFE-----NHLRQQPIILAFGS---RYPK--HFHLTHHVDKRTIMFDFSGGSS  127 (315)
Q Consensus        81 ~f~----r~~~-----~~~~~~~~I~A~G~---~~~s--~~~l~~H~~~gs~~ldl~~G~~  127 (315)
                      .|+    ...+     +......++||.++   .+|+  +..|.+||..|.+.+||..+..
T Consensus       116 ~~rC~nC~~W~~gg~~~~t~~~~~~wA~~~~~~~~p~~~~a~i~~Hd~~G~f~~dl~~A~~  176 (184)
T cd00241         116 VFRCQNCTSWNNGGGIDPTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGINLSDAQS  176 (184)
T ss_pred             EEEeCCCcccCCCCccCcCCCceEEEEECCCCCCCCCCcccCCceecCCcceeEechhccc
Confidence            442    2222     11223378999852   3332  6779999988999999986544

It is a hemoflavoenzyme that is comprised of a b-type cytochrome domain linked to a large flavodehydrogenase domain. The 2 domains can be separated proteolytically. The cytochrome domain folds as a beta sandwich and complexes a heme molecule.

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=99.34  E-value=4.5e-12  Score=98.96  Aligned_cols=90  Identities=20%  Similarity=0.276  Sum_probs=77.2

Q ss_pred             ccchhhhhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhh
Q 021260          132 VSSREKKNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGI  211 (315)
Q Consensus       132 ~~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~i  211 (315)
                      ..+..+.+|+++|.++|++++|+|++..+ .|+      ++|..+|++.++++++|+.++....++.+. -..++.|.++
T Consensus        13 ~~~~~l~~Hi~lm~la~~il~Pi~lvL~~-~~s------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p~-lyp~n~H~k~   84 (105)
T PF10348_consen   13 PHRSALYAHIVLMTLAWVILYPIGLVLGN-ARS------RWHLPVQTVFLVLMILGLFLGSVYNGSTPD-LYPNNAHGKM   84 (105)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHH-ccc------hHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CCCCCHHHHH
Confidence            36789999999999999999999998764 443      349999999999999999999887666542 1368999999


Q ss_pred             hHHHHHHHHHHHHhheec
Q 021260          212 GIFILVLSILQILAFFLR  229 (315)
Q Consensus       212 G~~~~~l~~~Q~~~g~~r  229 (315)
                      |.++++++++|++.|+++
T Consensus        85 g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   85 GWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999764

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>PF04526 DUF568: Protein of unknown function (DUF568); InterPro: IPR017214 This group represents an uncharacterised conserved protein

Probab=98.44  E-value=2.6e-06  Score=65.84  Aligned_cols=91  Identities=16%  Similarity=0.271  Sum_probs=65.9

Q ss_pred             CCCCcEEEEEEcCC-CCcEEEEEEeeccccccccCCCCCccc--cCCCceEEEeCc--EEEEEEEEecCCCCCcccEEEe
Q 021260           24 MAGSSAMVGWFNKK-GQPRIKQYYLQGTRSSQVIHDKGELPL--TNVPPVVAIHGA--MIYMAFQLKFENHLRQQPIILA   98 (315)
Q Consensus        24 M~gsd~~i~~~~~~-G~~~v~~~~~~g~~~~~~~~~~~~l~~--~~~s~~~~~~~g--~i~~~f~r~~~~~~~~~~~I~A   98 (315)
                      |.|++++|++++++ |.+.+..|.++++.+ .  ++++++.+  .+.+  +++.++  +|+.+.+++.+  .++.+.+|.
T Consensus         1 M~GtqALvAf~~~~~G~~~v~T~~i~sy~~-~--l~~~~lsf~v~~ls--ae~~~~~~~IfAtl~Lp~n--~t~vnhVWQ   73 (101)
T PF04526_consen    1 MVGTQALVAFKNSNGGSVTVYTYNITSYSP-S--LQPGPLSFDVSDLS--AEYSGGEMTIFATLKLPGN--STSVNHVWQ   73 (101)
T ss_pred             CCCceEEEEEeCCCCceEEEEEEeeccccc-c--cccccccccccceE--eEEeCCEEEEEEEEEcCCC--CcEEEEEeC
Confidence            99999999999988 889999999998886 2  23343443  3333  355667  45666677755  788999999


Q ss_pred             ecCCCCCCCCccccCCC-----CceeEee
Q 021260           99 FGSRYPKHFHLTHHVDK-----RTIMFDF  122 (315)
Q Consensus        99 ~G~~~~s~~~l~~H~~~-----gs~~ldl  122 (315)
                      .|+... ++.+..|+..     +..+|||
T Consensus        74 ~G~~v~-gg~p~~H~~~~~Nl~S~gtldl  101 (101)
T PF04526_consen   74 VGPSVQ-GGSPQPHPTSGANLQSKGTLDL  101 (101)
T ss_pred             cCCccC-CCccccCCCCCccccceEEecC
Confidence            999842 5778889753     4556664

>KOG3568 consensus Dopamine beta-monooxygenase [Amino acid transport and metabolism]

Probab=98.26  E-value=2.5e-06  Score=81.14  Aligned_cols=93  Identities=20%  Similarity=0.336  Sum_probs=68.9

Q ss_pred             CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260            1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM   80 (315)
Q Consensus         1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~   80 (315)
                      |.|+|... +.+|+.||||+.+.|.+||+++.|.+ .+...++|+|.+-...-..++||+ .++...    ..+...+.+
T Consensus        58 i~F~l~~~-t~~~v~fGfSdrG~lanaDivv~~n~-g~~~~~~DayTn~d~qi~~D~QQD-yqll~~----~e~~~~~~i  130 (603)
T KOG3568|consen   58 IAFRLQVR-TAGYVGFGFSDRGALANADIVVGGNA-GGRPYLQDAYTNADGQIKKDAQQD-YQLLYA----MENSTHTII  130 (603)
T ss_pred             eEEEEEec-cCCEEEEecCCcCCcccCcEEEEecc-CCchhhhhhhcCCCCceecchhhh-hHHHhh----hccCCccEE
Confidence            67999997 78999999999899999999999865 455788999987555444455555 555432    123335568


Q ss_pred             EEEEecCC--------CCCcccEEEeec
Q 021260           81 AFQLKFEN--------HLRQQPIILAFG  100 (315)
Q Consensus        81 ~f~r~~~~--------~~~~~~~I~A~G  100 (315)
                      .|+|+++.        .+++.+++||+-
T Consensus       131 ~frRkl~TCDp~Dy~i~dgTv~vv~a~~  158 (603)
T KOG3568|consen  131 EFRRKLHTCDPNDYSITDGTVRVVWAYL  158 (603)
T ss_pred             EEecccCcCCccceeccCCeEEEEEEEe
Confidence            89998752        468899999963

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=97.17  E-value=0.0043  Score=52.92  Aligned_cols=60  Identities=18%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             CCcccchhhhHHHHHHHHHHHHhh-eeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          203 ANISAHRGIGIFILVLSILQILAF-FLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       203 ~~~~~H~~iG~~~~~l~~~Q~~~g-~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      -+.++|.+.|+.+..++.++.... .+.+++    ++.++..|..++.+++++-..+..+|....
T Consensus       112 lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~----~~~~R~lHi~lN~~~l~Lf~~q~itG~~il  172 (175)
T PF13301_consen  112 LFWSPHLWAGLAVVGLMAFSAALVPQIQKGN----RPWARRLHIYLNSLALLLFAWQAITGWRIL  172 (175)
T ss_pred             CccCchHHHHHHHHHHHHHHHHHHHHHccCC----chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367888888888888888876554 222222    345556888888888888888888887654

>cd08554 Cyt_b561 Eukaryotic cytochrome b(561)

Probab=96.69  E-value=0.007  Score=49.00  Aligned_cols=94  Identities=21%  Similarity=0.384  Sum_probs=64.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHH
Q 021260          170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR  249 (315)
Q Consensus       170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~  249 (315)
                      |..|..+|++++++...--++.....+... +......|..+..+.+++.++=...++....  .+.++-+...|.++|.
T Consensus         2 f~~H~~lm~~g~~~l~~~~il~~r~~~~~~-~~~~~~~H~~l~~l~~~~~~~G~~~~~~~~~--~~~~~h~~s~Hs~lGl   78 (131)
T cd08554           2 FNWHPLLMVIGFVFLMGEALLVYRVFRLLT-KRALKLLHAILHLLAFVLGLVGLLAVFLFHN--AGGIANLYSLHSWLGL   78 (131)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--ccCcccchhHHHHHHH
Confidence            467999999997754443333332222111 1134578999999888888877766654332  2234455678999999


Q ss_pred             HHHHHHHHHHHHhhhhc
Q 021260          250 LALFFASVNIVLGIQIG  266 (315)
Q Consensus       250 ~~~~l~~~~i~~Gl~~~  266 (315)
                      +++++..+|...|+...
T Consensus        79 ~~~~l~~~q~~~G~~~~   95 (131)
T cd08554          79 ATVLLFLLQFLSGFVLF   95 (131)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999997765

Cytochrome b(561) is a family of endosomal or secretory vesicle-specific electron transport proteins. They are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments. This is an exclusively eukaryotic family. Members of the prokaryotic cytochrome b561 family are not deemed homologous.

>PF03188 Cytochrom_B561: Eukaryotic cytochrome b561; InterPro: IPR004877 Cytochrome b561 is a secretory vesicle-specific electron transport protein []

Probab=96.48  E-value=0.043  Score=44.53  Aligned_cols=93  Identities=19%  Similarity=0.365  Sum_probs=62.1

Q ss_pred             hhHHHHHHHHHHHH-HHHhhhheec-cccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHH
Q 021260          172 LHAIIQLVGFIFGL-ATVLLGIQLY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGR  249 (315)
Q Consensus       172 ~H~~~~~~~~~~~~-~g~~l~~~~~-~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~  249 (315)
                      +|..+|.+++.+.. .|+.. .... .....+......|..+-.+.+++.++=.+..+..  ++.+.++-++..|.++|.
T Consensus         1 ~H~~lm~~~f~~l~~~~il~-~r~~~~~~~~~~~~~~~H~~lq~l~~~~~~~G~~~~~~~--~~~~~~~h~~s~H~~lG~   77 (137)
T PF03188_consen    1 WHPILMTIGFVFLMPEGILA-ARYNPFRRKSRKWWFRIHWILQVLALVFAIIGFVAIFIN--KNRNGKPHFKSWHSILGL   77 (137)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-HHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCCCCCCCchhhhhH
Confidence            49999999977655 34333 2221 1111123456789999888887777666665432  222233555678999999


Q ss_pred             HHHHHHHHHHHHhhhhcc
Q 021260          250 LALFFASVNIVLGIQIGY  267 (315)
Q Consensus       250 ~~~~l~~~~i~~Gl~~~~  267 (315)
                      +++++...|...|+....
T Consensus        78 ~~~~l~~~Q~~~G~~~~~   95 (137)
T PF03188_consen   78 ATFVLALLQPLLGFFRFF   95 (137)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999988654

It is an integral membrane protein, that binds two haem groups non-covalently. This entry represents the eukaryotic family. Members of the 'bacterial cytochrome b561' family can be found in IPR011577 from INTERPRO.; GO: 0016021 integral to membrane

>smart00665 B561 Cytochrome b-561 / ferric reductase transmembrane domain

Probab=96.47  E-value=0.034  Score=44.89  Aligned_cols=95  Identities=24%  Similarity=0.391  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHHHHH-HHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHHHH
Q 021260          172 LHAIIQLVGFIFGL-ATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFGRL  250 (315)
Q Consensus       172 ~H~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~  250 (315)
                      +|..+|++++++.. .|+.+.-......+ +......|..+.++.+++.++=...++...++  +.++-++..|.++|.+
T Consensus         1 ~H~~lm~~~f~~l~p~gil~~r~~~~~~~-~~~~~~~H~~lq~~a~~~~~~g~~~~~~~~~~--~~~~~~~s~H~~lGl~   77 (129)
T smart00665        1 LHPVLMILGFGFLMGEAILVARPLTRFLS-KPTWFLLHVVLQILALVLGVIGLLAIFISHNE--SGIANFYSLHSWLGLA   77 (129)
T ss_pred             CcHHHHHHHHHHHHHHHHHHhhhHhhccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCCccchhHHHHHH
Confidence            48999999875544 44444321011111 12345789999998888877776666544222  1234567789999999


Q ss_pred             HHHHHHHHHHHhhhhccCC
Q 021260          251 ALFFASVNIVLGIQIGYAG  269 (315)
Q Consensus       251 ~~~l~~~~i~~Gl~~~~~~  269 (315)
                      ++++..+|...|+.....+
T Consensus        78 ~~~l~~~Q~~~G~~~~~~~   96 (129)
T smart00665       78 AFVLAGLQWLSGFLRPLPP   96 (129)
T ss_pred             HHHHHHHHHHHHHHHhcCC
Confidence            9999999999998876554

Cytochrome b-561 recycles ascorbate for the generation of norepinephrine by dopamine-beta-hydroxylase in the chromaffin vesicles of the adrenal gland. It is a transmembrane heme protein with the two heme groups being bound to conserved histidine residues. A cytochrome b-561 homologue, termed Dcytb, is an iron-regulated ferric reductase in the duodenal mucosa. Other homologues of these are also likely to be ferric reductases. SDR2 is proposed to be important in regulating the metabolism of iron in the onset of neurodegenerative disorders.

>cd08760 Cyt_b561_FRRS1_like Eukaryotic cytochrome b(561), including the FRRS1 gene product

Probab=96.41  E-value=0.034  Score=48.06  Aligned_cols=98  Identities=17%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhcc-CCCChhhhhhHHHHHHHHHHHHHHHhhhheeccccc-cCCCCcccchh
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFK-HKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRG  210 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k-~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~H~~  210 (315)
                      .+..+++|..++.++..+.. +|..+.-..+ ...+.....|..+-++.++++++=..+|+......+ .+..+...|.+
T Consensus        65 ~~~~~~~H~~~q~~~~~~~i-~g~~~~~~~~~~~~~~~~~~H~~lGl~~~~l~~lQ~~~G~~~~~~~~~~R~~~~~~H~~  143 (191)
T cd08760          65 DPVWFYLHAGLQLLAVLLAI-AGFVLGIVLVQGGGGSLNNAHAILGIIVLALAILQPLLGLLRPHPGSKKRSIWNWAHRW  143 (191)
T ss_pred             CchhHHHHHHHHHHHHHHHH-HHHHHHHHhhccCCCCCcCcchhhhHHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHH
Confidence            45678999999998876655 5555443332 223445689999999988888887788875443322 12345789999


Q ss_pred             hhHHHHHHHHHHHHhheeccC
Q 021260          211 IGIFILVLSILQILAFFLRPS  231 (315)
Q Consensus       211 iG~~~~~l~~~Q~~~g~~r~~  231 (315)
                      +|.++.++...|...|+.-..
T Consensus       144 ~G~~~~~l~~v~i~~G~~~~~  164 (191)
T cd08760         144 LGRAALILAIVNIFLGLDLAG  164 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999975443

Cytochrome b(561), as found in eukaryotes, similar to and including the human FRRS1 gene product (ferric-chelate reductase 1), also called SDR-2 (stromal cell-derived receptor 2). This family comprises a variety of domain architectures, many of which contain dopamine beta-monooxygenase (DOMON) domains. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08761 Cyt_b561_CYB561D2_like Eukaryotic cytochrome b(561), including the CYB561D2 gene product

Probab=96.30  E-value=0.054  Score=46.54  Aligned_cols=97  Identities=14%  Similarity=0.335  Sum_probs=66.6

Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHhhhheecccc--ccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchh
Q 021260          167 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKL--NVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH  244 (315)
Q Consensus       167 ~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~--~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H  244 (315)
                      ...|.+|..+|.+++.+.....++.+...+..  ..+......|.++-.+.+++.++=....+.-  ++.+.++-++-.|
T Consensus        18 ~~~f~~Hp~~m~i~~~~l~~~~il~~~~~~~~~~~~~~~~~~~H~~l~~la~~~~~~G~~~~~~~--~~~~~~~hf~s~H   95 (183)
T cd08761          18 TSLFSWHPLLMSLGFLLLMTEALLLLQPTSSLTKLARKTKVRLHWILQLLALLCILAGLVAIYYN--KERNGKPHFTSWH   95 (183)
T ss_pred             cceeehhHHHHHHHHHHHHHHHHHHhcCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh--cccCCCCCccchh
Confidence            45689999999999877665555544322211  1112355789999998888776655444322  2223345566789


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 021260          245 HWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       245 ~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      .|+|.+++++...|...|+..
T Consensus        96 ~~lGl~~~~l~~~Q~~~G~~~  116 (183)
T cd08761          96 GILGLVTVILIVLQALGGLAL  116 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999999999864

Cytochrome b(561), as found in eukaryotes, similar to and including the human CYB561D2 gene product. CYB561D2 is a candidate tumor suppressor. The protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product

Probab=96.24  E-value=0.08  Score=43.68  Aligned_cols=95  Identities=18%  Similarity=0.287  Sum_probs=65.1

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260          169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  248 (315)
Q Consensus       169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  248 (315)
                      =|.+|..+|++++++...--++.+......+. ......|.++.++.+++.++-...-+..+++  +..+=+...|-|+|
T Consensus         6 ~Fn~HP~lm~~G~i~l~geaiL~~~~~~~~~k-~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~--~~~~hf~SlHswlG   82 (143)
T cd08763           6 QFNVHPLCMVLGLVFLCGEALLVYRVFRNETK-RSTKILHGLLHIMALVISLVGLVAVFDYHQA--NGYPDMYSLHSWCG   82 (143)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHhcccccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHccc--cCCCccccHHHHHH
Confidence            47889999999988766544554432221111 1345689999999988877655444322222  22344566999999


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 021260          249 RLALFFASVNIVLGIQIG  266 (315)
Q Consensus       249 ~~~~~l~~~~i~~Gl~~~  266 (315)
                      .+++++=..|...|+...
T Consensus        83 l~t~~L~~lQ~~~G~~~f  100 (143)
T cd08763          83 ILTFVLYFLQWLIGFSFF  100 (143)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999997654

Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561)

Probab=95.96  E-value=0.082  Score=46.55  Aligned_cols=98  Identities=18%  Similarity=0.289  Sum_probs=64.0

Q ss_pred             ChhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260          167 PLWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW  246 (315)
Q Consensus       167 ~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~  246 (315)
                      ...|.+|..+|++++++...=-++.+......+ +......|..+..+.+++.++-...-+-.+++..+..+=+...|-|
T Consensus        21 ~~~Fn~HP~lM~~Gfi~l~geAiLvyr~~~~~~-k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~~hfySlHSw   99 (214)
T cd08764          21 GLQFNWHPLLMVLGLIFLYGNSILVYRVFRNTR-KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPIPNMYSLHSW   99 (214)
T ss_pred             CceEeecHHHHHHHHHHHHHHHHHHhccCcccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHH
Confidence            357899999999998765443333333222111 1123458999999999887766444332233322223334558999


Q ss_pred             HHHHHHHHHHHHHHHhhhh
Q 021260          247 FGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       247 ~G~~~~~l~~~~i~~Gl~~  265 (315)
                      +|.++++|=..|...|+..
T Consensus       100 lGl~t~~L~~lQ~~~Gf~~  118 (214)
T cd08764         100 LGLTAVILFSLQWVGGFVS  118 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999743

Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=95.63  E-value=0.036  Score=47.11  Aligned_cols=95  Identities=16%  Similarity=0.124  Sum_probs=65.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhhe--ec-cccccCCCCcccchhhhHHHHHHHHHHHHhheec------------------
Q 021260          171 YLHAIIQLVGFIFGLATVLLGIQ--LY-NKLNVKNANISAHRGIGIFILVLSILQILAFFLR------------------  229 (315)
Q Consensus       171 ~~H~~~~~~~~~~~~~g~~l~~~--~~-~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r------------------  229 (315)
                      .+|+..-++-+++.+.|+.+...  .. ............|..+|++.+++.++..+.++.+                  
T Consensus        10 ~~Hw~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (188)
T PF00033_consen   10 LLHWLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIPQYR   89 (188)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHhh
Confidence            56887777667777778777532  11 1111112456899999999999999999988776                  


Q ss_pred             cC--CCCCCcccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260          230 PS--KDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       230 ~~--~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      ..  ++.+..+.+|...++.-.+++++..+.+.+|+-+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~  127 (188)
T PF00033_consen   90 LFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIM  127 (188)
T ss_dssp             TT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11  2233456678888899999999999999999998

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>PLN02680 carbon-monoxide oxygenase

Probab=95.22  E-value=0.35  Score=43.03  Aligned_cols=93  Identities=17%  Similarity=0.301  Sum_probs=60.0

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260          169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  248 (315)
Q Consensus       169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  248 (315)
                      =|.+|-.+|++++++...--++.+......+  ......|..+=.+.+++.++-...-+..++.  +.++=+...|-|+|
T Consensus        46 ~Fn~HPlLM~~Gfi~l~geAIL~yr~~~~~k--~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~--~~~~nfySlHSWlG  121 (232)
T PLN02680         46 IFNVHPVLMVIGLVLLNGEAMLAYKTVPGTK--NLKKLVHLTLQFLAFCLSLIGVWAALKFHNE--KGIDNFYSLHSWLG  121 (232)
T ss_pred             eEechHHHHHHHHHHHHHHHHhccccccccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCccccccHHHHHH
Confidence            4789999999999885544444333222111  1345678887777777665544332222221  12333445899999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 021260          249 RLALFFASVNIVLGIQI  265 (315)
Q Consensus       249 ~~~~~l~~~~i~~Gl~~  265 (315)
                      .+++++-.+|...|+..
T Consensus       122 l~t~iL~~lQ~~~Gf~~  138 (232)
T PLN02680        122 LACLFLFSLQWAAGFVT  138 (232)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999865

>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1

Probab=95.05  E-value=0.36  Score=39.90  Aligned_cols=93  Identities=20%  Similarity=0.338  Sum_probs=60.0

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHH
Q 021260          168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWF  247 (315)
Q Consensus       168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~  247 (315)
                      ..|.+|-.+|++++++...=-++.+......+  ......|..+=.+.+++.++-...-+ +.+. .+..+-....|-|+
T Consensus         6 ~~Fn~HP~lM~~gfi~l~~eAiL~~r~~~~~k--~~~k~iH~~l~~la~~~~vvGl~avf-~~~~-~~~~~~~~SlHSwl   81 (144)
T cd08766           6 LIFNVHPVLMVIGFIFLAGEAILAYKTVPGSR--EVQKAVHLTLHLVALVLGIVGIYAAF-KFHN-EVGIPNLYSLHSWL   81 (144)
T ss_pred             ceeeccHHHHHHHHHHHHHHHHHHhhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHH-HHhc-ccCccccccHHHHH
Confidence            46899999999998665543444444322111  12346788887777776655443332 2111 11233344589999


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 021260          248 GRLALFFASVNIVLGIQ  264 (315)
Q Consensus       248 G~~~~~l~~~~i~~Gl~  264 (315)
                      |.+++++-..|...|+.
T Consensus        82 Gl~t~~L~~lQ~~~G~~   98 (144)
T cd08766          82 GIGTISLFGLQWLFGFV   98 (144)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999976

Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>COG2717 Predicted membrane protein [Function unknown]

Probab=94.04  E-value=0.77  Score=40.18  Aligned_cols=138  Identities=17%  Similarity=0.206  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhhhheeccc--cc--cCCCCcccchhhhHHHHHHH
Q 021260          144 GMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLLGIQLYNK--LN--VKNANISAHRGIGIFILVLS  219 (315)
Q Consensus       144 m~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~--~~--~~~~~~~~H~~iG~~~~~l~  219 (315)
                      ..+.|.+++-+....+|+.+.  +.+.++=+.+.+.|+..++.=+..-+...-+  ..  ..|-...+=-.+|++.++++
T Consensus        50 ~al~fLl~~la~tp~~~~~~~--~~l~~~Rr~LGl~af~~~~lH~~~Y~~~~l~~~~~~~~~d~~~rpyitiG~iaflll  127 (209)
T COG2717          50 WALIFLLVTLAVTPLARLLKQ--PKLIRIRRALGLWAFFYALLHFTAYLVLDLGLDLALLGLDLLKRPYITIGMIAFLLL  127 (209)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence            334444555455556676664  4566777777777776655433332211111  10  01233445556777777666


Q ss_pred             HHHHHhheeccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHH
Q 021260          220 ILQILAFFLRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV  289 (315)
Q Consensus       220 ~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y~~~~~~~~~~~~~  289 (315)
                      +.-.+.-+---.++..  +.|+.+|++ ++.+++||.+=...+..   .+..+.+.|+++.+++++..+.
T Consensus       128 ~pLalTS~k~~~rrlG--~rW~~LHrL-vYl~~~L~~lH~~~s~K---~~~~~~vlY~ii~~~lll~R~~  191 (209)
T COG2717         128 IPLALTSFKWVRRRLG--KRWKKLHRL-VYLALILGALHYLWSVK---IDMPEPVLYAIIFAVLLLLRVT  191 (209)
T ss_pred             HHHHHHhhHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHHHHHH
Confidence            5544432210011111  668999995 78888888887777222   1223456777666555554444

>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product

Probab=93.75  E-value=3  Score=35.65  Aligned_cols=97  Identities=14%  Similarity=0.202  Sum_probs=61.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHHHhhhheeccccc-cCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHH
Q 021260          168 LWYYLHAIIQLVGFIFGLATVLLGIQLYNKLN-VKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHW  246 (315)
Q Consensus       168 ~wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~-~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~  246 (315)
                      ..|.+|-.+|++++++...=.++.+.....+. .+......|..+=.+.+++.++-...-+-.++. .+ .+=.-.+|.|
T Consensus        33 ~~Fn~HP~lMv~Gfi~L~geAiL~Yr~~~~~~~~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~-~~-~~nlySlHSW  110 (179)
T cd08762          33 KNFNWHPVLMVTGMVVLYGNAALVYRIPLTWGGPKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV-HH-TANLYSLHSW  110 (179)
T ss_pred             CceeehHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-ccchhhHHHH
Confidence            37999999999998876443344343222211 111235778888888877776655444332222 11 1222236999


Q ss_pred             HHHHHHHHHHHHHHHhhhhc
Q 021260          247 FGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       247 ~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      +|..++++=..|...|+...
T Consensus       111 lGl~t~~Lf~lQ~~~Gf~~f  130 (179)
T cd08762         111 VGICTVALFTCQWVMGFTSF  130 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998654

Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.

>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product

Probab=92.16  E-value=0.4  Score=40.01  Aligned_cols=95  Identities=22%  Similarity=0.308  Sum_probs=68.0

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChhhhhhHHHHHHHHHHHHHHHhhhheec---c-ccccCCCCcc
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLWYYLHAIIQLVGFIFGLATVLLGIQLY---N-KLNVKNANIS  206 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~---~-~~~~~~~~~~  206 (315)
                      ++....+|.++..+|..+.. +|+.+.=.+|+.  .+.-.-+|..+.++++++...=.+.|+...   . ....+....-
T Consensus        44 k~~~k~iH~~L~~~a~~~~i-~Gl~avf~~hn~~~~~~fySlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~~~~~~r~~~~p  122 (153)
T cd08765          44 KLLMKLIHAGLHILAFILAI-ISVVAVFVFHNAKNIPNMYSLHSWVGLAAVILYPLQLVLGISVYLLPVAPVRLRAALMP  122 (153)
T ss_pred             chhhHHHHHHHHHHHHHHHH-HHHHHHHHHccccCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHH
Confidence            55678999999999976654 777655445543  234457899999999888777777776432   1 1111123567


Q ss_pred             cchhhhHHHHHHHHHHHHhhee
Q 021260          207 AHRGIGIFILVLSILQILAFFL  228 (315)
Q Consensus       207 ~H~~iG~~~~~l~~~Q~~~g~~  228 (315)
                      .|...|.+++++.+.-.++|+.
T Consensus       123 ~H~~~G~~i~~Lai~t~~lG~~  144 (153)
T cd08765         123 LHVYSGLFIFGTVIATALMGIT  144 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999864

Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me

>PF13172 PepSY_TM_1: PepSY-associated TM helix

Probab=91.68  E-value=0.23  Score=30.33  Aligned_cols=31  Identities=29%  Similarity=0.770  Sum_probs=26.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260          237 RRFWNWYHHWFGRLALFFASVNIVLGIQIGY  267 (315)
Q Consensus       237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~  267 (315)
                      |+.+..+|+++|..+.+.-.+-+.+|+.+..
T Consensus         2 r~~~~~~H~~~g~~~~~~ll~~~lTG~~l~~   32 (34)
T PF13172_consen    2 RKFWRKIHRWLGLIAAIFLLLLALTGALLNF   32 (34)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5677789999999999999999999987654

>PF10067 DUF2306: Predicted membrane protein (DUF2306); InterPro: IPR018750 Members of this family of hypothetical bacterial proteins have no known function

Probab=91.39  E-value=0.82  Score=35.39  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=26.9

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260          237 RRFWNWYHHWFGRLALFFASVNIVLGIQIGYA  268 (315)
Q Consensus       237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~  268 (315)
                      |++....|+++||+-+++..+.+..|+.+...
T Consensus         2 R~k~~~~HR~lGrvyv~~~~~~a~sa~~i~~~   33 (103)
T PF10067_consen    2 RRKGPRLHRWLGRVYVAAMLISALSALFIAFY   33 (103)
T ss_pred             CCCcccHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45566799999999999999999999887654

>PLN02351 cytochromes b561 family protein

Probab=91.06  E-value=3.2  Score=37.18  Aligned_cols=93  Identities=15%  Similarity=0.196  Sum_probs=56.2

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260          169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  248 (315)
Q Consensus       169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  248 (315)
                      .|.+|-.+|++++++...=-++.+......+.  .....|..+=.+.+++.++-...-  .+ ..++..+=.-..|-|+|
T Consensus        50 ffn~HP~lMviGfi~L~geAILvYR~~~~~~k--~~K~lH~~Lh~~Ali~~vvGl~a~--fh-~~~~~i~nlySLHSWlG  124 (242)
T PLN02351         50 YAVLHPLLMVIGFILISGEAILVHRWLPGSRK--TKKSVHLWLQGLALASGVFGIWTK--FH-GQDGIVANFYSLHSWMG  124 (242)
T ss_pred             eecccHHHHHHHHHHHHHHHHHHhhcccccch--HHHHHHHHHHHHHHHHHHHHHHHH--Hh-cccCCccchhHHHHHHH
Confidence            34799999999988755444444433322211  245677777666665554433331  11 11111122334799999


Q ss_pred             HHHHHHHHHHHHHhhhhc
Q 021260          249 RLALFFASVNIVLGIQIG  266 (315)
Q Consensus       249 ~~~~~l~~~~i~~Gl~~~  266 (315)
                      ..++++=.+|-..|+...
T Consensus       125 l~tv~Lf~lQwv~Gf~~F  142 (242)
T PLN02351        125 LICVSLFGAQWLTGFMSF  142 (242)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998654

>PF10348 DUF2427: Domain of unknown function (DUF2427); InterPro: IPR018825 This entry represents the N-terminal region of a family of proteins conserved in fungi

Probab=90.82  E-value=2.6  Score=32.82  Aligned_cols=88  Identities=18%  Similarity=0.251  Sum_probs=54.2

Q ss_pred             CChhhhhhHHHHHHHHHH-HHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchh
Q 021260          166 DPLWYYLHAIIQLVGFIF-GLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYH  244 (315)
Q Consensus       166 ~~~wf~~H~~~~~~~~~~-~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H  244 (315)
                      .+...+.|..+|+++.++ .-+|++++... +         +.|-..=++-+++.++=.+.|....+...  .-+.+-.|
T Consensus        14 ~~~~l~~Hi~lm~la~~il~Pi~lvL~~~~-s---------r~~~~~q~~~~~l~~~g~~~g~~~~~~~p--~lyp~n~H   81 (105)
T PF10348_consen   14 HRSALYAHIVLMTLAWVILYPIGLVLGNAR-S---------RWHLPVQTVFLVLMILGLFLGSVYNGSTP--DLYPNNAH   81 (105)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHcc-c---------hHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCCCCHH
Confidence            356789999999998544 44677765543 2         22333333333333333444433211110  13356799


Q ss_pred             HHHHHHHHHHHHHHHHHhhhh
Q 021260          245 HWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       245 ~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      .-+|++++++.+++..+|+..
T Consensus        82 ~k~g~il~~l~~~q~~~gv~~  102 (105)
T PF10348_consen   82 GKMGWILFVLMIVQVILGVIL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999754

Several of these proteins are annotated as being Ftp1 but this could not be confirmed. Their function is not known.

>PLN02810 carbon-monoxide oxygenase

Probab=90.67  E-value=3.4  Score=36.74  Aligned_cols=93  Identities=18%  Similarity=0.281  Sum_probs=60.9

Q ss_pred             hhhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCCCCCCcccccchhHHHH
Q 021260          169 WYYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSKDSKFRRFWNWYHHWFG  248 (315)
Q Consensus       169 wf~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r~~~~~~H~~~G  248 (315)
                      =|.+|-.+|++++++.-.=-++.+......+  ......|..+=.+.+++.++-...-|-.++. .+ .+=.-.+|.|+|
T Consensus        46 ~FN~HPvlMv~Gfi~l~geAIL~Yr~~~~~k--~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~-~~-i~nlySLHSWlG  121 (231)
T PLN02810         46 IFNLHPVLMLIGLIIIGGEAIMSYKSLPLKK--EVKKLIHLVLHAIALILGIFGICAAFKNHNE-SG-IANLYSLHSWLG  121 (231)
T ss_pred             eeeehHHHHHHHHHHHhhHHHHHhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhccc-cC-CCceeeHHHHHH
Confidence            5899999999998875554444443222111  2356778888777777766555443322222 22 222335899999


Q ss_pred             HHHHHHHHHHHHHhhhh
Q 021260          249 RLALFFASVNIVLGIQI  265 (315)
Q Consensus       249 ~~~~~l~~~~i~~Gl~~  265 (315)
                      ..++++=..|-..|+..
T Consensus       122 l~tv~Lf~lQw~~Gf~~  138 (231)
T PLN02810        122 IGIISLYGIQWIYGFIV  138 (231)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999843

>PF13301 DUF4079: Protein of unknown function (DUF4079)

Probab=90.63  E-value=5.2  Score=34.14  Aligned_cols=62  Identities=21%  Similarity=0.209  Sum_probs=48.8

Q ss_pred             CcccchhhhHHHHHHHHHHHHhhee---ccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCC
Q 021260          204 NISAHRGIGIFILVLSILQILAFFL---RPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGN  270 (315)
Q Consensus       204 ~~~~H~~iG~~~~~l~~~Q~~~g~~---r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~  270 (315)
                      ....|..+|.++++++.+-.+.|..   +...     +.+..-|-|.|.++..|-.++..+.-.+....+
T Consensus        79 ~r~~H~~~g~~ll~~~~L~~lGG~~~~~~~~~-----~lf~spH~~~Gl~~~~L~~~s~al~~~i~~g~~  143 (175)
T PF13301_consen   79 ARDRHYRLGFALLAFMGLGALGGQLGTYRQNG-----KLFWSPHLWAGLAVVGLMAFSAALVPQIQKGNR  143 (175)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcchHHHHHcCC-----CCccCchHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            5688999999999999999888742   2211     244456999999999999999999988876433

>KOG1619 consensus Cytochrome b [Energy production and conversion]

Probab=90.29  E-value=2.1  Score=38.07  Aligned_cols=95  Identities=19%  Similarity=0.213  Sum_probs=64.7

Q ss_pred             cchhhhhhHHHHHHHHHHHHhhhhhhh-hhccCC-CChhhhhhHHHHHHHHHHHHHHHhhhheec--cc--cccCCCCcc
Q 021260          133 SSREKKNHGALGMIGWGIILPVGAIIP-RYFKHK-DPLWYYLHAIIQLVGFIFGLATVLLGIQLY--NK--LNVKNANIS  206 (315)
Q Consensus       133 ~~~~~~~Hg~lm~~aw~~l~p~gil~a-R~~k~~-~~~wf~~H~~~~~~~~~~~~~g~~l~~~~~--~~--~~~~~~~~~  206 (315)
                      ++....+|..|-.+|..+.. .|+... .+-+.. .+.-..+|-.+.+..+++-..=++.||...  ..  .+.+..+--
T Consensus        85 k~~~KliH~~LH~~Alvl~i-~gl~avf~~hn~~~i~NfySLHSWlGl~~v~ly~~Q~v~GF~tfl~pg~~~~~Rs~lmP  163 (245)
T KOG1619|consen   85 KKVSKLIHLGLHIIALVLAI-IGLCAVFDSHNLVGIANFYSLHSWLGLCVVILYSLQWVFGFFTFLFPGSPESYRSRLMP  163 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcCccceeeHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHhhhhh
Confidence            45567899999999865544 444333 221211 133458999999998888777777776432  11  111234567


Q ss_pred             cchhhhHHHHHHHHHHHHhhee
Q 021260          207 AHRGIGIFILVLSILQILAFFL  228 (315)
Q Consensus       207 ~H~~iG~~~~~l~~~Q~~~g~~  228 (315)
                      .|..+|+..+++.+.|.++|++
T Consensus       164 ~H~~~Gl~~f~lai~ta~~Gl~  185 (245)
T KOG1619|consen  164 WHVFLGLAIFILAIVTALTGLL  185 (245)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999984

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=89.90  E-value=5.8  Score=33.27  Aligned_cols=94  Identities=13%  Similarity=0.060  Sum_probs=56.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhheeccccccCCCC--cccchhhhHHHHHHHHHHHHhh---------------------e
Q 021260          171 YLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNAN--ISAHRGIGIFILVLSILQILAF---------------------F  227 (315)
Q Consensus       171 ~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~--~~~H~~iG~~~~~l~~~Q~~~g---------------------~  227 (315)
                      .+|+..-+.-+++.+.|+.+-......... +..  ...|.++|++++++.++=.+..                     .
T Consensus         8 ~~HW~~a~~~i~l~~tG~~~~~~~~~~~~~-~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~   86 (182)
T PF01292_consen    8 ILHWLNALSFIALIATGLWIHFPPPGLYFG-DFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLYFL   86 (182)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccc-ccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence            467777766666666676664332221111 111  5789999999998887666555                     1


Q ss_pred             eccCCCCCCcccccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260          228 LRPSKDSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGY  267 (315)
Q Consensus       228 ~r~~~~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~  267 (315)
                      .+.  +.+....++..-+..-.+.+++..+.+.+|+-++.
T Consensus        87 ~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~  124 (182)
T PF01292_consen   87 LRG--KPPPAGKYNPGQKIVHWVLYLLLLLLPITGLLLWF  124 (182)
T ss_pred             hcC--CCCCCCcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  11222334555555777778888888888888753

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>TIGR02125 CytB-hydogenase Ni/Fe-hydrogenase, b-type cytochrome subunit

Probab=89.20  E-value=3.8  Score=35.54  Aligned_cols=28  Identities=14%  Similarity=0.066  Sum_probs=22.5

Q ss_pred             ccchhHHHHHHHHHHHHHHHHHhhhhcc
Q 021260          240 WNWYHHWFGRLALFFASVNIVLGIQIGY  267 (315)
Q Consensus       240 ~~~~H~~~G~~~~~l~~~~i~~Gl~~~~  267 (315)
                      +|..-++.-.+++++..+.+.+|+.+..
T Consensus       112 ~n~~~k~~~~~l~~~~~~~~lTG~~~~~  139 (211)
T TIGR02125       112 YNPLQFVAYFGFIVLILFMILTGLALYY  139 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4667777777888899999999988764

This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.

>PF00033 Cytochrom_B_N: Cytochrome b(N-terminal)/b6/petB; InterPro: IPR016174 This entry represents a haem-binding domain with a 4-helical bundle structure that is found in transmembrane di-haem cytochromes

Probab=88.89  E-value=2  Score=36.19  Aligned_cols=129  Identities=15%  Similarity=0.108  Sum_probs=76.3

Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhh---cc---CCCChhhhhhHHHHHHHHHHHHHHHhhhhee---------------
Q 021260          136 EKKNHGALGMIGWGIILPVGAIIPRY---FK---HKDPLWYYLHAIIQLVGFIFGLATVLLGIQL---------------  194 (315)
Q Consensus       136 ~~~~Hg~lm~~aw~~l~p~gil~aR~---~k---~~~~~wf~~H~~~~~~~~~~~~~g~~l~~~~---------------  194 (315)
                      ....| +++++++.+++..|..+...   ..   ......+.+|..+.++-.++.+.=+...+..               
T Consensus         8 ~R~~H-w~~al~~~~l~~tG~~~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (188)
T PF00033_consen    8 TRLLH-WLNALLFILLLITGLYLMFPFWWLAGGFPGRQLLRWLHFSLGIVFLALFLLRILWRLFSRRFWKSDDIWFRQIP   86 (188)
T ss_dssp             HHHHH-HHHHHHHHHHHHHHHHHH-TTGGGGGTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHGGGT---GGGHHHHHSHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH
Confidence            34556 46777888888888876521   11   1224568899988877655555444444433               


Q ss_pred             ---cc---ccccCCCCcccchhhhHHHHHHHHHHHHhheec--------cCC---CCCCcccccchhHHHHHHHHHHHHH
Q 021260          195 ---YN---KLNVKNANISAHRGIGIFILVLSILQILAFFLR--------PSK---DSKFRRFWNWYHHWFGRLALFFASV  257 (315)
Q Consensus       195 ---~~---~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r--------~~~---~~~~r~~~~~~H~~~G~~~~~l~~~  257 (315)
                         ..   ..+.....+...+..-.++..+.+++++.|+..        +..   ..........+|.+.+.+++++..+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~~iH~~~~~ll~~~i~~  166 (188)
T PF00033_consen   87 QYRLFPRKPPPPSGKYNPLQKLVYWALYLLLLLMAITGLIMLWFFWWPLPPWLLPPPGLAEWARLIHFILAYLLLAFIII  166 (188)
T ss_dssp             HHHTT-HHHH----SS-HHHHHHHHHHHHHHHHHHHHHHHC-----TTTTGGGS-HHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhccCCCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence               00   011112345667777778888888899988655        111   1123455677898888888877766


Q ss_pred             HHHHhhhh
Q 021260          258 NIVLGIQI  265 (315)
Q Consensus       258 ~i~~Gl~~  265 (315)
                      =++.++..
T Consensus       167 Hi~~a~~~  174 (188)
T PF00033_consen  167 HIYAAIFH  174 (188)
T ss_dssp             HHHHHHHB
T ss_pred             HHHHHHHH
Confidence            66655543

The domain contains four transmembrane helices in an up-and-down bundle, and binds two haem groups in between the helices; three of the four haem-binding residues is conserved between family members. Proteins containing this domain include: N-terminal domain of mitochondrial cytochrome b subunit, in which the domain contains an extra transmembrane linker helix that is absent in plant and cyanobacteria subunits []. Cytochrome b6 subunit of the cytochrome b6f complex, which provides the electronic connection between the photosystems I and II reaction centres of oxygenic photosynthesis, and generates a transmembrane electrochemical proton gradient for adenosine triphosphate synthesis []. Cytochrome gamma subunit of formate dehydrogenase-N (Fdn-N), which acts as a major component of Escherichia coli nitrate respiration []. ; GO: 0022904 respiratory electron transport chain, 0016020 membrane; PDB: 1KQG_C 1KQF_C.

>COG3038 CybB Cytochrome B561 [Energy production and conversion]

Probab=88.69  E-value=5.2  Score=34.30  Aligned_cols=62  Identities=23%  Similarity=0.201  Sum_probs=42.5

Q ss_pred             hhhhHHHHHHHHHHHHHHHhhhheeccccccCCCCcccchhhhHHHHHHHHHHHHhheeccCC
Q 021260          170 YYLHAIIQLVGFIFGLATVLLGIQLYNKLNVKNANISAHRGIGIFILVLSILQILAFFLRPSK  232 (315)
Q Consensus       170 f~~H~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~  232 (315)
                      ..+|+.+-++.+...+.|...+.....+.. ...+...|..+|+.++.++++-.+..+.-|.+
T Consensus        13 i~lHWl~allv~~~~~~g~~~~~~~~~~~~-~~~~~~~Hks~Gi~vl~L~v~Rl~wrl~~~~p   74 (181)
T COG3038          13 IALHWLMALLVIGAFALGELMGFLPRGPGL-YFLLYELHKSIGILVLALMVLRLLWRLRNPAP   74 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            467887766655555556666554443311 11467899999999999999999988765443

>PRK11513 cytochrome b561; Provisional

Probab=88.05  E-value=2.2  Score=36.43  Aligned_cols=62  Identities=19%  Similarity=0.161  Sum_probs=38.2

Q ss_pred             CcccchhhhHHHHHHHHHHHHhheeccCCCCCCc-ccc-cchhHHHHHHHHHHHHHHHHHhhhh
Q 021260          204 NISAHRGIGIFILVLSILQILAFFLRPSKDSKFR-RFW-NWYHHWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       204 ~~~~H~~iG~~~~~l~~~Q~~~g~~r~~~~~~~r-~~~-~~~H~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      +...|..+|+++++++++-.+..+..+.+..... +.| +..=+..-.++|++-++...+|+..
T Consensus        41 ~~~~H~s~G~~vl~L~v~Rl~~r~~~~~P~~~~~~~~~~~~~A~~~H~~LY~lli~~plsG~~~  104 (176)
T PRK11513         41 INMIHVSCGISILVLMVVRLLLRLKYPTPPIVPKPKPMMTGLAHLGHLVIYLLFIALPVIGLVM  104 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999887543321111 222 1111222355666666666666653

>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices

Probab=86.72  E-value=14  Score=30.00  Aligned_cols=46  Identities=20%  Similarity=0.252  Sum_probs=28.7

Q ss_pred             hhhHHHHHHHHHHHHhhhhhhhhhccCCCChhhhhhHHHHHHHHHHHHHHHhh
Q 021260          138 KNHGALGMIGWGIILPVGAIIPRYFKHKDPLWYYLHAIIQLVGFIFGLATVLL  190 (315)
Q Consensus       138 ~~Hg~lm~~aw~~l~p~gil~aR~~k~~~~~wf~~H~~~~~~~~~~~~~g~~l  190 (315)
                      .+...++.++-.++. .|....|--|      .+.|+-+|+.++.+..+-+++
T Consensus         6 ~l~a~~~~~s~~ll~-~g~~~Ir~~~------~~~Hr~~Ml~a~~ls~lFlv~   51 (133)
T PF04238_consen    6 DLNAVLNAISAVLLL-IGWYFIRRGR------IKLHRKLMLTAFVLSALFLVS   51 (133)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHhCC------HHHHHHHHHHHHHHHHHHHHH
Confidence            455677777755554 6666665221      378999998877765544333

>PF13706 PepSY_TM_3: PepSY-associated TM helix

Probab=86.37  E-value=0.86  Score=28.37  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=22.2

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhh
Q 021260          237 RRFWNWYHHWFGRLALFFASVNIVLGIQI  265 (315)
Q Consensus       237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~  265 (315)
                      |+.+...|+|+|.++-++-.+-+++|..+
T Consensus         1 rr~~~~~H~W~Gl~~g~~l~~~~~tG~~~   29 (37)
T PF13706_consen    1 RRILRKLHRWLGLILGLLLFVIFLTGAVM   29 (37)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            45667789999988888888888887554

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana

Probab=85.99  E-value=3.4  Score=32.25  Aligned_cols=49  Identities=35%  Similarity=0.442  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHHHHhheeccCCC----CCCcccccchhHHHHHHHHHHHHHHHH
Q 021260          211 IGIFILVLSILQILAFFLRPSKD----SKFRRFWNWYHHWFGRLALFFASVNIV  260 (315)
Q Consensus       211 iG~~~~~l~~~Q~~~g~~r~~~~----~~~r~~~~~~H~~~G~~~~~l~~~~i~  260 (315)
                      +|.+.++++.++.+.+ .|+..-    .........+|+++|+.+++++.+=..
T Consensus         1 ~G~~a~~~l~~~~~l~-~R~~~l~~~~~~~~~~~~~~Hr~lg~~~~~~~~~H~~   53 (125)
T PF01794_consen    1 LGILAFALLPLVFLLG-LRNSPLARLTGISFDRLLRFHRWLGRLAFFLALLHGV   53 (125)
T ss_pred             CHHHHHHHHHHHHHHH-HhhhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777777777777 454321    111122345999999999998877644

This may be a family of flavocytochromes capable of moving electrons across the plasma membrane [] that include a potential FAD binding domain. Mutations in the sequence of cytochrome b-245 heavy chain (gp91-phox) lead to the X-linked chronic granulomatous disease. The bacteriocidal ability of phagocytic cells is reduced and is characterised by the absence of a functional plasma membrane associated NADPH oxidase [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0016021 integral to membrane

>PF13630 SdpI: SdpI/YhfL protein family

Probab=84.04  E-value=1.6  Score=31.40  Aligned_cols=36  Identities=22%  Similarity=0.386  Sum_probs=29.9

Q ss_pred             CCCCcccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260          233 DSKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYA  268 (315)
Q Consensus       233 ~~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~  268 (315)
                      ..+....|+..|+..|...++.|++.+..|+.....
T Consensus        16 t~~s~~~W~~a~r~~g~~~~~~Gi~~~~~~~~~~~~   51 (76)
T PF13630_consen   16 TMKSDENWKKAHRFAGKIFIIGGIVLLIIGIIILFL   51 (76)
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344567899999999999999999999998886643

>PF01292 Ni_hydr_CYTB: Prokaryotic cytochrome b561; InterPro: IPR011577 Cytochrome b561 is an integral membrane and electron transport protein, that binds two haem groups non-covalently

Probab=83.67  E-value=12  Score=31.21  Aligned_cols=126  Identities=13%  Similarity=0.111  Sum_probs=65.6

Q ss_pred             hhhhhHHHHHHHHHHHHhhhhhhhhhccCC--CChh--hhhhHHHHHHHHHHHHHHHhhh--------------------
Q 021260          136 EKKNHGALGMIGWGIILPVGAIIPRYFKHK--DPLW--YYLHAIIQLVGFIFGLATVLLG--------------------  191 (315)
Q Consensus       136 ~~~~Hg~lm~~aw~~l~p~gil~aR~~k~~--~~~w--f~~H~~~~~~~~~~~~~g~~l~--------------------  191 (315)
                      .+..| +++++++.+++..|..+....+..  ...+  +.+|..+..+-.++.+.-+...                    
T Consensus         6 ~r~~H-W~~a~~~i~l~~tG~~~~~~~~~~~~~~~~~~~~~H~~~G~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~   84 (182)
T PF01292_consen    6 TRILH-WLNALSFIALIATGLWIHFPPPGLYFGDFGGVRNWHVIAGLLLFALLIFRLLWRWRRLFPWSDDVFFQVKNYLY   84 (182)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHhcccccccccccchHHhHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            34556 456667777777887654322221  1122  6789987766444443333322                    


Q ss_pred             heeccccccCCCCccc-chhhhHHHHHHHHHHHHhheec--c--C------CCCCCcccccchhHHHHHHHHHHHHHHHH
Q 021260          192 IQLYNKLNVKNANISA-HRGIGIFILVLSILQILAFFLR--P--S------KDSKFRRFWNWYHHWFGRLALFFASVNIV  260 (315)
Q Consensus       192 ~~~~~~~~~~~~~~~~-H~~iG~~~~~l~~~Q~~~g~~r--~--~------~~~~~r~~~~~~H~~~G~~~~~l~~~~i~  260 (315)
                      ....++.+. ...+++ -.....++.++..++++.|++.  .  .      .........+.+|.+.+..++++..+=+.
T Consensus        85 ~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~iTG~~~~~~~~~~~~~~~~~~~~~~~~~~vH~~~a~~~i~~i~~Hv~  163 (182)
T PF01292_consen   85 FLLRGKPPP-AGKYNPGQKIVHWVLYLLLLLLPITGLLLWFASAEGFPLFAASPGGAQIARSVHFFLAWLLIAFIILHVY  163 (182)
T ss_pred             HHhcCCCCC-CCcCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            001111121 122232 3334666777888899888643  1  1      12223455677888888877765555444


Q ss_pred             Hhh
Q 021260          261 LGI  263 (315)
Q Consensus       261 ~Gl  263 (315)
                      ..+
T Consensus       164 ~a~  166 (182)
T PF01292_consen  164 AAL  166 (182)
T ss_pred             HHH
Confidence            443

This domain is also found in a number of nickel-dependent hydrogenase subunits which are also B-type cytochromes that interact with quinones and anchor the hydrogenase to the membrane. Members of the 'eukaryotic cytochrome b561' family can be found in IPR004877 from INTERPRO.; GO: 0009055 electron carrier activity, 0016021 integral to membrane

>COG5658 Predicted integral membrane protein [Function unknown]

Probab=83.36  E-value=8.4  Score=33.62  Aligned_cols=43  Identities=16%  Similarity=0.144  Sum_probs=33.1

Q ss_pred             CCCcccccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhH
Q 021260          234 SKFRRFWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGY  276 (315)
Q Consensus       234 ~~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y  276 (315)
                      .+.+.-||..|+++|-.+++.+.+....+........-+...+
T Consensus        39 ~~d~~~wk~a~~~l~pl~vi~gl~~~~~~~l~~~~~~~~~~v~   81 (204)
T COG5658          39 SPDQAMWKKAGLFLGPLLVIGGLVTRYMSLLAGGQGQMLLAVA   81 (204)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHHHH
Confidence            3456779999999999999999999998877776644444433

>PF10951 DUF2776: Protein of unknown function (DUF2776); InterPro: IPR021240 This bacterial family of proteins has no known function

Probab=82.89  E-value=3.8  Score=37.59  Aligned_cols=85  Identities=21%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHhhhheeccccccC-CCCcccchhhhHHHHHHHHHHHHhheec---cCCCCCCcccccchhHHHHHH
Q 021260          175 IIQLVGFIFGLATVLLGIQLYNKLNVK-NANISAHRGIGIFILVLSILQILAFFLR---PSKDSKFRRFWNWYHHWFGRL  250 (315)
Q Consensus       175 ~~~~~~~~~~~~g~~l~~~~~~~~~~~-~~~~~~H~~iG~~~~~l~~~Q~~~g~~r---~~~~~~~r~~~~~~H~~~G~~  250 (315)
                      .+..+.++++++|++-++....+.+.. .++.--|-..|+...+-.++-.+.-+.|   ..-.++.|+.|.       ..
T Consensus       156 ~Liav~~~~~li~~iw~~~Ll~~~~~~p~y~VAGhVm~Gla~iCtsLIaLVAtI~RQirN~ys~~Er~~W~-------~l  228 (347)
T PF10951_consen  156 ILIAVPILCALIGWIWAIVLLSSSDEHPAYFVAGHVMFGLACICTSLIALVATIARQIRNTYSEKERWKWP-------KL  228 (347)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCccceehhHHHhhHHHHHHHHHHHHHHHHHHHhccccHHHhhhhH-------HH
Confidence            445556777888888877655433221 2356678888888887666555544444   333444455444       45


Q ss_pred             HHHHHHHHHHHhhhhc
Q 021260          251 ALFFASVNIVLGIQIG  266 (315)
Q Consensus       251 ~~~l~~~~i~~Gl~~~  266 (315)
                      ++++|.+++..|+...
T Consensus       229 Vl~mGsi~~l~Gl~vl  244 (347)
T PF10951_consen  229 VLVMGSISILWGLYVL  244 (347)
T ss_pred             HHHHhhHHHHhhhheE
Confidence            6778888888888765

>TIGR01583 formate-DH-gamm formate dehydrogenase, gamma subunit

Probab=82.24  E-value=28  Score=30.16  Aligned_cols=30  Identities=13%  Similarity=0.021  Sum_probs=26.3

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          237 RRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ...+|+..+..-.++++++.+.+.+|+.++
T Consensus       101 ~~kyN~~Qk~~y~~i~~~~~~~~~TGl~m~  130 (204)
T TIGR01583       101 AGKYNAGQKSWYWILVLGGFLMIITGIFMW  130 (204)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999888899999999999999997

NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model.

>PRK10179 formate dehydrogenase-N subunit gamma; Provisional

Probab=80.96  E-value=12  Score=33.04  Aligned_cols=30  Identities=17%  Similarity=-0.022  Sum_probs=26.5

Q ss_pred             cccccchhHHHHHHHHHHHHHHHHHhhhhc
Q 021260          237 RRFWNWYHHWFGRLALFFASVNIVLGIQIG  266 (315)
Q Consensus       237 r~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~  266 (315)
                      ...+|+..+.....+++++.+.+.+|+-++
T Consensus       106 ~gk~N~~QKl~y~~i~~~~~~~i~TGl~l~  135 (217)
T PRK10179        106 VGKYNAGQKMMFWSIMSMIFVLLVTGVIIW  135 (217)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999986

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed

Probab=80.83  E-value=32  Score=30.07  Aligned_cols=47  Identities=17%  Similarity=0.258  Sum_probs=27.5

Q ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhccCCCcchhhHHHHHHHHHHHHHH
Q 021260          239 FWNWYHHWFGRLALFFASVNIVLGIQIGYAGNEWKIGYGFLLAVVLLAVIV  289 (315)
Q Consensus       239 ~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~~~~~~~~y~~~~~~~~~~~~~  289 (315)
                      .|+.+|+. .+.+++++.+=.+.....   ...-.+.|+++++.++...+.
T Consensus       145 ~Wk~LH~l-~Y~a~~L~~~H~~~~~k~---~~~~~~~y~~~~~~ll~~R~~  191 (205)
T PRK05419        145 RWQKLHRL-VYLIAILAPLHYLWSVKS---DSPEPLIYAAIVAVLLALRLK  191 (205)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhcc---ccccHHHHHHHHHHHHHHHHH
Confidence            68999987 566666777775544321   111235676666555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	315
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 32/191 (16%), Positives = 62/191 (32%), Gaps = 51/191 (26%)

Query: 57  HDKGELPLTNVPPVVAIHGAMIYMAFQLKFEN----H---LRQQPIILAFGSRYPK---- 105
           H    +        ++I    IY+  ++K EN    H   +    I   F S        
Sbjct: 412 HKYSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 106 ----HFHLTHHVDK----------RTIMFDFSGGSSSVLYVSSREKKNHGALGMIGWGII 151
               + H+ HH+            R +  DF        ++   +K  H +      G I
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR-------FL--EQKIRHDSTAWNASGSI 520

Query: 152 LPVGAIIPRYFKH---KDPLWYYLHAIIQLVGFIFGLATVLLG------IQLYNKLNVKN 202
           L     +  Y  +    DP   Y   +  ++ F+  +   L+       +++   L  ++
Sbjct: 521 LNTLQQLKFYKPYICDNDP--KYERLVNAILDFLPKIEENLICSKYTDLLRI--ALMAED 576

Query: 203 ANI--SAHRGI 211
             I   AH+ +
Sbjct: 577 EAIFEEAHKQV 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	315
1d7b_A	186	Cellobiose dehydrogenase; B-type cytochrome, Met/H	99.62
4gd3_A	235	NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-	88.2
1kqf_C	217	FDH-N gamma, formate dehydrogenase, nitrate-induci	87.17

>1d7b_A Cellobiose dehydrogenase; B-type cytochrome, Met/His ligation, beta sandwich, Fe(II)- protoporphyrin IX, oxidoreductase; HET: NAG BMA HEM 1PG; 1.90A {Phanerochaete chrysosporium} SCOP: b.1.9.1 PDB: 1d7d_A* 1d7c_A* 1pl3_A*

Probab=99.62  E-value=3.4e-15  Score=127.30  Aligned_cols=121  Identities=17%  Similarity=0.243  Sum_probs=93.9

Q ss_pred             CEEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEE
Q 021260            1 MTIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYM   80 (315)
Q Consensus         1 i~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~   80 (315)
                      +.|+|++|.+.||+|||++  ++|.|++|+|+|+++ |++++++|+.+||.+|++...+-++++..++   ..+++++++
T Consensus        44 ~~~qi~~p~~~gW~g~g~G--g~M~gs~l~v~w~~~-~~v~~S~R~a~g~~~P~~y~~~~~~~lL~gs---~vn~t~~~~  117 (186)
T 1d7b_A           44 FIGEVVAPIASKWIGIALG--GAMNNDLLLVAWANG-NQIVSSTRWATGYVQPTAYTGTATLTTLPET---TINSTHWKW  117 (186)
T ss_dssp             EEEEEEEETTCCEEEEETT--SSSSSSCEEEEEEET-TEEEEEEEECSSSSCCEECCSSCEEEECTTC---EECSSEEEE
T ss_pred             EEEEEEccCCCCEEEEecC--CCCCCCcEEEEEeCC-CEEEEEEEEecCccCCCccCCCceEEEcccc---cEeCCEEEE
Confidence            4689999988899999996  599999999999985 8899999999999999843332346665553   378889999


Q ss_pred             EEEEe----c-CC----CCCcccEEEeecCCCCC-----CCCccccCCCCceeEeecCCCc
Q 021260           81 AFQLK----F-EN----HLRQQPIILAFGSRYPK-----HFHLTHHVDKRTIMFDFSGGSS  127 (315)
Q Consensus        81 ~f~r~----~-~~----~~~~~~~I~A~G~~~~s-----~~~l~~H~~~gs~~ldl~~G~~  127 (315)
                      .|+++    . .+    ......++||+++..|.     +..+.+|+.+|.+.+||.....
T Consensus       118 ~f~C~~C~~w~~~g~~~~ts~~~~iwA~~~~~p~~~~~~~a~~~~H~~~G~~~~dL~~a~~  178 (186)
T 1d7b_A          118 VFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYSTAHS  178 (186)
T ss_dssp             EEEEETTTBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGGCBC
T ss_pred             EEEeCCCcccCCCCccccCCCCeEEEEECCCCCCCCCCCcccchhhhCcceEEEEcccccc
Confidence            99885    1 11    12223899999766431     4689999999999999997543

>4gd3_A NI/Fe-hydrogenase 1 B-type cytochrome subunit; O2-tolerant H2:quinone oxidoreductase, membrane-bound, NI-Fe hydrogenase-cytochrome B complex; HET: LMT HEM; 3.30A {Escherichia coli}

Probab=88.20  E-value=4.8  Score=34.44  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=33.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhhhheecc--ccccCC----CCcccchhhhHHHHHHHHHHHHhhee
Q 021260          171 YLHAIIQLVGFIFGLATVLLGIQLYN--KLNVKN----ANISAHRGIGIFILVLSILQILAFFL  228 (315)
Q Consensus       171 ~~H~~~~~~~~~~~~~g~~l~~~~~~--~~~~~~----~~~~~H~~iG~~~~~l~~~Q~~~g~~  228 (315)
                      -+|+..=++-+++.+.|+.+......  +.....    .....|..+|+++++++++-.+.++.
T Consensus        20 ~~HW~~a~~ii~l~~tG~~~~~~~~~~~g~~~~~~~~~~~~~~H~~~G~~~~~l~~~Rl~w~~~   83 (235)
T 4gd3_A           20 IWHWLTVLCMAVLMVTGYFIGKPLPSVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFV   83 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46776655555555556555432110  100000    01247999999999999888877764

>1kqf_C FDH-N gamma, formate dehydrogenase, nitrate-inducible, cytochr B556(FDN) subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: f.21.1.1 PDB: 1kqg_C*

Probab=87.17  E-value=1.7  Score=36.77  Aligned_cols=62  Identities=21%  Similarity=0.141  Sum_probs=39.9

Q ss_pred             cccchhhhHHHHHHHHHHHHhheec---cCCCC------------------CCcccccchhHHHHHHHHHHHHHHHHHhh
Q 021260          205 ISAHRGIGIFILVLSILQILAFFLR---PSKDS------------------KFRRFWNWYHHWFGRLALFFASVNIVLGI  263 (315)
Q Consensus       205 ~~~H~~iG~~~~~l~~~Q~~~g~~r---~~~~~------------------~~r~~~~~~H~~~G~~~~~l~~~~i~~Gl  263 (315)
                      ...|.++|+++++++++-.+ .+.|   |.+.+                  +....+|+..+..=.+++++..+.+.+|+
T Consensus        54 ~~~H~~~G~~~~~l~~~r~~-r~~r~~~p~~~~~~~~~~~~~yl~~~~~~~p~~~~~n~~~~~~~~~l~~l~~~~~~TG~  132 (217)
T 1kqf_C           54 RILHPFFGIAIFVALMFMFV-RFVHHNIPDKKDIPWLLNIVEVLKGNEHKVADVGKYNAGQKMMFWSIMSMIFVLLVTGV  132 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HHGGGSCCCGGGHHHHHSHHHHHTTCHHHHCCCCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHhCCChhHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788888888877766443 1111   22110                  11234677777766788888999999999


Q ss_pred             hhcc
Q 021260          264 QIGY  267 (315)
Q Consensus       264 ~~~~  267 (315)
                      .+..
T Consensus       133 ~~~~  136 (217)
T 1kqf_C          133 IIWR  136 (217)
T ss_dssp             HTCT
T ss_pred             HHHH
Confidence            8875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	315
d1pl3a_	186	b.1.9.1 (A:) Cytochrome domain of cellobiose dehyd	1e-09

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 186

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 54.5 bits (131), Expect = 1e-09
 Identities = 18/130 (13%), Positives = 33/130 (25%), Gaps = 14/130 (10%)

Query: 10  TTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPP 69
            + W+G+     G       +V W N   Q      +  G            L       
Sbjct: 53  ASKWIGIALG--GAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLPETT 109

Query: 70  VVAIHGAMIYMAF------QLKFENHLRQQPIILAFGSRYP-----KHFHLTHHVDKRTI 118
           + + H   ++              +   Q  +  AF +             + H D    
Sbjct: 110 INSTHWKWVFRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFF 169

Query: 119 MFDFSGGSSS 128
             D+S   S+
Sbjct: 170 GIDYSTAHSA 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	315
d1pl3a_	186	Cytochrome domain of cellobiose dehydrogenase {Fun	99.69
d1kqfc_	216	Formate dehydrogenase N, cytochrome (gamma) subuni	86.78

>d1pl3a_ b.1.9.1 (A:) Cytochrome domain of cellobiose dehydrogenase {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: CBD9-like
family: Cytochrome domain of cellobiose dehydrogenase
domain: Cytochrome domain of cellobiose dehydrogenase
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.69  E-value=8.9e-17  Score=135.36  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=95.8

Q ss_pred             EEEEEecCCCCEEEEEeCCCCCCCCCcEEEEEEcCCCCcEEEEEEeeccccccccCCCCCccccCCCceEEEeCcEEEEE
Q 021260            2 TIILSAIYTTGWVGMGFSKDGMMAGSSAMVGWFNKKGQPRIKQYYLQGTRSSQVIHDKGELPLTNVPPVVAIHGAMIYMA   81 (315)
Q Consensus         2 ~f~ls~~~~~gWvAiGfs~~~~M~gsd~~i~~~~~~G~~~v~~~~~~g~~~~~~~~~~~~l~~~~~s~~~~~~~g~i~~~   81 (315)
                      .++|++|.+.||+||||+  ++|.|++|+|+|++ +|++++++|+.+||.+|++..++..+.+...+   ..++++++.+
T Consensus        45 i~qi~ap~~~GWvgiG~g--g~M~gs~l~V~w~~-~~~v~~S~R~atG~~~P~~~~~~~~~~~l~~s---~vn~t~~~~~  118 (186)
T d1pl3a_          45 IGEVVAPIASKWIGIALG--GAHNNDLLLVAWAN-GNQIVSSTRWATGYVQPTAYTGTATLTTLPET---TINSTHWKWV  118 (186)
T ss_dssp             EEEEEEETTCCEEEEETT--SSSSSSCEEEEEEE-TTEEEEEEEECSTTSCCEECCSSCEEEECTTC---EECSSEEEEE
T ss_pred             EEEEeCCCCCcEEEEEcC--CCCCCCcEEEEEec-CCeEEEEEEEecceeCCcccCCCceEEEccCc---eEECCEEEEE
Confidence            688999989999999997  59999999999997 58899999999999999765444445544443   4778888888


Q ss_pred             EEEecC---------CCCCcccEEEeecCCCC---C--CCCccccCCCCceeEeecCCCcc
Q 021260           82 FQLKFE---------NHLRQQPIILAFGSRYP---K--HFHLTHHVDKRTIMFDFSGGSSS  128 (315)
Q Consensus        82 f~r~~~---------~~~~~~~~I~A~G~~~~---s--~~~l~~H~~~gs~~ldl~~G~~~  128 (315)
                      |++..-         ....+..+|||+++..|   +  +..|.+|+.+|.+.+||..+...
T Consensus       119 f~C~~C~~w~~~~~~~~~~~~~~iwA~~~~~p~~~~~~~~~i~~H~~~G~f~~dl~~a~~~  179 (186)
T d1pl3a_         119 FRCQGCTEWNNGGGIDVTSQGVLAWAFSNVAVDDPSDPQSTFSEHTDFGFFGIDYSTAHSA  179 (186)
T ss_dssp             EEEETCSBCTTSCBCCTTSEEEEEEEEESSCCSCTTCTTCCCCCCSEEEEEEEEGGGCBCT
T ss_pred             EEEeccccccCCCcccCCCceEEEEEECCCCCCCCCCCccCcceecCCceEEEEcccCccc
Confidence            876521         13566789999987643   1  57899999999999999876544

>d1kqfc_ f.21.1.1 (C:) Formate dehydrogenase N, cytochrome (gamma) subunit {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Heme-binding four-helical bundle
superfamily: Transmembrane di-heme cytochromes
family: Formate dehydrogenase N, cytochrome (gamma) subunit
domain: Formate dehydrogenase N, cytochrome (gamma) subunit
species: Escherichia coli [TaxId: 562]

Probab=86.78  E-value=6  Score=31.09  Aligned_cols=31  Identities=16%  Similarity=-0.016  Sum_probs=27.3

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhhhhccC
Q 021260          238 RFWNWYHHWFGRLALFFASVNIVLGIQIGYA  268 (315)
Q Consensus       238 ~~~~~~H~~~G~~~~~l~~~~i~~Gl~~~~~  268 (315)
                      ..+|+..+....++++++.+.+.+|+.++..
T Consensus       106 ~~~n~~qkl~~~~~~~~~~~~~~TGl~l~~~  136 (216)
T d1kqfc_         106 GKYNAGQKMMFWSIMSMIFVLLVTGVIIWRP  136 (216)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4578899999999999999999999998764