Citrus Sinensis ID: 021294

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHccccccccccccccccccEEEcccEEEcccccccccccccccccEEEcccccccHHHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccEEEEEEccccccccccccccHHHHHHHcccEEEEEEEcccccccccccccccccccccccEEEEEccccccccccccccEEccHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHccccHHHHHHHHHHHcccccEccccccEcccEEEccccEEEcHHHHHHHHHHccccccEEEcccccccHHHHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHcHccccccccccccccccccccccHHcHccccccccccccccccccccHHHHcccccEEEEEEEEEEEcccccHHcccccccEEEEEEccEEEEEEEEccccccccccEEEEccccccccEEEEEEEcccccccccccccEEcHHHHHHHHHHHcccccccccEcccc
Coil and Loop (DISEMBL)
matqhansdpknvsgpraRLENllrqpgnrhcadcgspdpkwvslsTGVFIcikcsgihrslgVHISKVLSVKLDEWTNEQVDALAEMggniavnkkyeaytpgnlkkpspnsfideRSDFIRRKYekleffnfdeqallcpypaphrrssssstsssshdkkhyekQATRHRIGIafrnswgrkesesknskkANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKsnlnpvwneslmlsipenipplkvlvydkdtfttddfmgdaeidIQPLVTAAracetpismspcnlgng
Flexible Loop (DISEMBL)
matqhansdpknvsgprARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEaytpgnlkkpspnsfidERSDFIRRKYEKLEFFNFDEQALLCPYPAPHrrssssstsssshdkkhyekqatrhrigiafrnswgrkesesknskkanSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACEtpismspcnlgng
Low Complexity Region (SEG)
MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRssssstssssHDKKHYEKQATRHRIGIAFRNSWGRkesesknskkansLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Disordered region (IsUnstruct)
*******************************CADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYT************I*ERSDFIRRKYEKLEFFNFDEQALLCPY******************************IGIAF*******************LVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET************
Disordered Region (DISOPRED)
**********************LLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF**************************************************************KANSLVAMVEFVGLIKVNVVKG*******VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM*PC*L***
Disordered Region (DISEMBL)
**************GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYP************************ATRHRIGIAFRNSW************ANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Disordered Region (DISPRO)
***************PRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF****************************************************************VAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGNG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q8L7A4	385	Probable ADP-ribosylation	yes	no	0.929	0.758	0.687	1e-116
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.875	0.816	0.484	1e-76
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.872	0.815	0.488	1e-76
Q7TN29	428	Stromal membrane-associat	yes	no	0.378	0.278	0.487	2e-28
Q8WU79	429	Stromal membrane-associat	yes	no	0.378	0.277	0.487	2e-28
Q5EA00	429	Stromal membrane-associat	yes	no	0.378	0.277	0.487	3e-28
Q5F413	428	Stromal membrane-associat	yes	no	0.359	0.264	0.478	4e-28
Q9FL69	483	Probable ADP-ribosylation	no	no	0.404	0.262	0.451	1e-24
O75689	374	Arf-GAP with dual PH doma	no	no	0.401	0.336	0.462	2e-24
P40529	298	ADP-ribosylation factor G	yes	no	0.334	0.352	0.513	3e-23

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score =  417 bits (1071), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 207/301 (68%), Positives = 245/301 (81%), Gaps = 9/301 (2%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           S PR RLE LL+QPGN++CADCGSP+PKWVSLS GVFICIKCSG+HRSLGVHISKVLSVK
Sbjct: 44  SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVK 103

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEWT++QVD L   GGN AVN+++EA      KKP P+S  +ER+DFIR+KYE+ +F +
Sbjct: 104 LDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMD 163

Query: 134 FDEQALLCPYPAPHRRSSSS-STSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNS 192
             + AL C Y  P R ++S  S  S+SH       ++T++RIG AFRNSWGR+ES+ K  
Sbjct: 164 PKDGAL-CTYQQPSRTNTSPPSLCSASH-------RSTKNRIGHAFRNSWGRRESDHKGP 215

Query: 193 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVW 252
           KK+NS+  MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALG Q+VKTRVIK+NLNPVW
Sbjct: 216 KKSNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVW 275

Query: 253 NESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           NE+LMLSIPE +PPLKVLVYDKDTF+TDDFMG+AEIDIQPLV+AA+A ET     P  LG
Sbjct: 276 NETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLG 335

Query: 313 N 313
           +
Sbjct: 336 S 336

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/299 (48%), Positives = 190/299 (63%), Gaps = 24/299 (8%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           SG R R+ +LL Q  NR CADCG+PDPKW S + GVFIC+KC G+HRSLG HISKVLSV 
Sbjct: 13  SGKR-RIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVT 71

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEW++E+VD++ E+GGN + N  YEA+ P    KP P++  D+R  FIR KYE  EF  
Sbjct: 72  LDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEFLK 131

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSK 193
                       P  R   +S   SS     +   +   +I  +FR         + +S 
Sbjct: 132 ------------PSLR--ITSVRGSSTKTPAFLSSSLSKKIVDSFR---------TNSSS 168

Query: 194 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN 253
           +   L  MVEF+GL+KV + KGTN+A+RD+M+SDPYV+L LG Q  ++ V+KSNLNPVWN
Sbjct: 169 QQPQLEGMVEFIGLLKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWN 228

Query: 254 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           E LMLS+P N   +K+ V+D DTF+ DD MG+AEIDIQPL+T+A A   P       +G
Sbjct: 229 EELMLSVPHNYGSVKLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIG 287

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/299 (48%), Positives = 192/299 (64%), Gaps = 25/299 (8%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           SG R R+ +LL QP NR CADCG+ DPKW S + GVFIC+KC G+HRSLG HISKVLSV 
Sbjct: 13  SGKR-RIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVT 71

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEW++E+VD++ E+GGN + N  YEA+ P    KP P+   D+R  FIR KYE  EF  
Sbjct: 72  LDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEFLK 131

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSK 193
                     P+    S   ST SS+     +   +   +I  +FR         + +S 
Sbjct: 132 ----------PSLRITSGKGSTKSSA-----FLTSSLSRKIMDSFR---------TNSSS 167

Query: 194 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN 253
           +      MVEF+GL+KV + KGTNLA+RD+M+SDPYV+L LG Q ++T V+ SNLNPVWN
Sbjct: 168 QTMFQEGMVEFIGLLKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWN 227

Query: 254 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           + LMLS+PE+  P+K+ VYD DTF+ DD MG+A+IDIQPL+T+A A   P       +G
Sbjct: 228 QELMLSVPESYGPVKLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIG 286

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q7TN29|SMAP2_MOUSE Stromal membrane-associated protein 2 OS=Mus musculus GN=Smap2 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 4/123 (3%)

Query: 11  KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
           K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct: 7   KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query: 71  SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
           SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct: 67  SVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 122

Query: 131 FFN 133
           + +
Sbjct: 123 YMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q8WU79|SMAP2_HUMAN Stromal membrane-associated protein 2 OS=Homo sapiens GN=SMAP2 PE=1 SV=1

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 4/123 (3%)

Query: 11  KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
           K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct: 7   KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query: 71  SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
           SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct: 67  SVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 122

Query: 131 FFN 133
           + +
Sbjct: 123 YMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|Q5EA00|SMAP2_BOVIN Stromal membrane-associated protein 2 OS=Bos taurus GN=SMAP2 PE=2 SV=1

 Score =  126 bits (316), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 4/123 (3%)

Query: 11  KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
           K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct: 7   KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query: 71  SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
           SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct: 67  SVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKK 122

Query: 131 FFN 133
           + +
Sbjct: 123 YMD 125

GTPase activating protein that acts on ARF1. Can also activate ARF6 (in vitro). May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|Q5F413|SMAP2_CHICK Stromal membrane-associated protein 2 OS=Gallus gallus GN=SMAP2 PE=2 SV=1

 Score =  125 bits (314), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 56/117 (47%), Positives = 81/117 (69%), Gaps = 4/117 (3%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           +A L +LL +  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+
Sbjct: 13  QAVLGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQ 72

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           WT EQ+  + EM GN   N+ YEA+ P N ++P  +  ++    FIR KYEK ++ +
Sbjct: 73  WTQEQIQCMQEM-GNGKANRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKKYMD 125

GTPase activating protein. May play a role in clathrin-dependent retrograde transport from early endosomes to the trans-Golgi network.

Gallus gallus (taxid: 9031)

>sp|Q9FL69|AGD5_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD5 OS=Arabidopsis thaliana GN=AGD5 PE=1 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 8/135 (5%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           R  LE LL+ P NR CADC +  P+W S++ G+FIC++CSGIHRSLGVHISKV S  LD 
Sbjct: 16  RKILEGLLKHPENRECADCKTKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT 75

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136
           W  EQV  +  M GN   N  +EA  P N  +           +FIR KYE+  + +  E
Sbjct: 76  WLPEQVAFIQSM-GNDKANSYWEAELPPNYDRVG-------IENFIRAKYEEKRWVSRGE 127

Query: 137 QALLCPYPAPHRRSS 151
           +A   P     RR S
Sbjct: 128 KARSPPRVEQERRKS 142

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|O75689|ADAP1_HUMAN Arf-GAP with dual PH domain-containing protein 1 OS=Homo sapiens GN=ADAP1 PE=1 SV=2

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 6/132 (4%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           RA LE LL++PGN  CADCG+PDP W S + GVFIC+ CSGIHR++   +SKV SV+LD 
Sbjct: 7   RAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA 64

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136
           W   QV+ +A   GN A   ++E+  P    +P+P+     R  +IR KYE+ EF   ++
Sbjct: 65  WEEAQVEFMASH-GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 123

Query: 137 QALLCPYPAPHR 148
           Q    PY A +R
Sbjct: 124 QE---PYSAGYR 132

GTPase-activating protein for the ADP ribosylation factor family (Probable). Binds phosphatidylinositol 3,4,5-trisphosphate (PtdInsP3) and inositol 1,3,4,5-tetrakisphosphate (InsP4).

Homo sapiens (taxid: 9606)

>sp|P40529|AGE2_YEAST ADP-ribosylation factor GTPase-activating protein effector protein 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AGE2 PE=1 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 66/111 (59%), Gaps = 6/111 (5%)

Query: 20  LENLLRQPGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWT 78
           L  LLR PGN HCADC +   P+W S S GVFICIKC+GIHRSLG HISKV SV LD W 
Sbjct: 11  LSALLRDPGNSHCADCKAQLHPRWASWSLGVFICIKCAGIHRSLGTHISKVKSVDLDTWK 70

Query: 79  NEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS--DFIRRKYE 127
            E +  L +   N+  N  YEA     LK+       D  S  +FI+ KYE
Sbjct: 71  EEHLVKLIQFKNNLRANSYYEATLADELKQ---RKITDTSSLQNFIKNKYE 118

GTPase-activating protein for the ADP ribosylation factor family.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
356541563	359	PREDICTED: probable ADP-ribosylation fac	0.949	0.830	0.734	1e-129
255544015	382	DNA binding protein, putative [Ricinus c	0.945	0.777	0.732	1e-123
224057333	358	predicted protein [Populus trichocarpa]	0.952	0.835	0.71	1e-122
356546368	368	PREDICTED: probable ADP-ribosylation fac	0.955	0.815	0.694	1e-120
356555032	371	PREDICTED: probable ADP-ribosylation fac	0.942	0.797	0.690	1e-118
357456691	400	ADP-ribosylation factor GTPase-activatin	0.952	0.747	0.701	1e-118
356506926	365	PREDICTED: probable ADP-ribosylation fac	0.920	0.791	0.711	1e-117
225465923	376	PREDICTED: probable ADP-ribosylation fac	0.904	0.755	0.685	1e-115
296090359	414	unnamed protein product [Vitis vinifera]	0.904	0.685	0.685	1e-115
297829354	383	hypothetical protein ARALYDRAFT_478135 [	0.929	0.762	0.691	1e-115

>gi|356541563|ref|XP_003539244.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 221/301 (73%), Positives = 258/301 (85%), Gaps = 3/301 (0%)

Query: 1   MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60
           M+ QH NSD   VSGP+ RL+NL+RQ GN++CADCGS DPKWVS + GVFICIKCSG+HR
Sbjct: 1   MSVQHENSDANGVSGPQKRLDNLMRQAGNKYCADCGSSDPKWVSSNNGVFICIKCSGVHR 60

Query: 61  SLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSD 120
           SLGVHISKVLS+KLDEWT+EQVDAL  +GGN  +N KYEA  P N+KKP PNS I+ER D
Sbjct: 61  SLGVHISKVLSLKLDEWTDEQVDALVNLGGNTVINMKYEACLPSNIKKPKPNSSIEERYD 120

Query: 121 FIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRN 180
           FIRRKYE L+F N +E  L CP+   H RSSSS+      DKKHY+KQAT+ RIG AFRN
Sbjct: 121 FIRRKYEFLQFLNIEEN-LSCPFVPSHARSSSSNKFP--QDKKHYDKQATKSRIGSAFRN 177

Query: 181 SWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVK 240
           SWGRK+SE K+SKK+NSL  MVEF+GLIKVNVVKGTNLA+RDVM+SDPYVI++LGHQ+VK
Sbjct: 178 SWGRKDSEHKSSKKSNSLAGMVEFIGLIKVNVVKGTNLAIRDVMSSDPYVIISLGHQSVK 237

Query: 241 TRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC 300
           TRVIKS+LNP+WNESLMLSIP++IPPLKVLVYDKDTF+TDDFMG+AEIDIQPLV+AA+A 
Sbjct: 238 TRVIKSSLNPIWNESLMLSIPDHIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAY 297

Query: 301 E 301
           E
Sbjct: 298 E 298

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544015|ref|XP_002513070.1| DNA binding protein, putative [Ricinus communis] gi|223548081|gb|EEF49573.1| DNA binding protein, putative [Ricinus communis]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/299 (73%), Positives = 254/299 (84%), Gaps = 2/299 (0%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           SGP  +LE LL Q  N+ CADCGSPDPKWVSLS GVFICIKCSG+HRSLGVHISKVLS+K
Sbjct: 36  SGPLKKLEKLLSQSSNKTCADCGSPDPKWVSLSHGVFICIKCSGVHRSLGVHISKVLSIK 95

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LD+WT+EQV+   ++GGN A NKKYEA  P + KKP P++ I+ERSDFIRRKYE L+F N
Sbjct: 96  LDDWTDEQVNNFIDLGGNAAANKKYEACIPNDFKKPKPDATIEERSDFIRRKYELLQFLN 155

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSK 193
           + +Q ++CPY  P R SS++  SSSS +KK Y+KQATRHRIG AFRNSWGRK+SE+K SK
Sbjct: 156 YSDQ-MICPY-KPQRSSSAAQMSSSSQEKKQYDKQATRHRIGNAFRNSWGRKDSENKQSK 213

Query: 194 KANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN 253
           K+NS+  MVEFVGLIKVNVVKGTNLAVRDV+TSDPYVIL+LGHQ+V+TRVIK+NLNPVWN
Sbjct: 214 KSNSMAGMVEFVGLIKVNVVKGTNLAVRDVVTSDPYVILSLGHQSVRTRVIKNNLNPVWN 273

Query: 254 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           ESLMLSIP++IP LKVLVYDKDTFTTDDFMG+AEIDIQPLV AA+A ET     P  LG
Sbjct: 274 ESLMLSIPDHIPALKVLVYDKDTFTTDDFMGEAEIDIQPLVAAAKAYETSTINEPMQLG 332

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057333|ref|XP_002299211.1| predicted protein [Populus trichocarpa] gi|222846469|gb|EEE84016.1| predicted protein [Populus trichocarpa]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/300 (71%), Positives = 244/300 (81%), Gaps = 1/300 (0%)

Query: 13  VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSV 72
           +SGP  RLE LL Q GN+ CADCGSPDPKWVSLS GVFICIKCSG+HRSLGVH+SKVLS+
Sbjct: 10  LSGPLKRLERLLSQSGNKTCADCGSPDPKWVSLSYGVFICIKCSGVHRSLGVHLSKVLSI 69

Query: 73  KLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFF 132
           KLDEWT+EQV+AL ++GGN A NKKYEA  P + +KP P++  +ER DFIRRKYE  EF 
Sbjct: 70  KLDEWTDEQVNALIDLGGNTAANKKYEASMPDDYRKPRPDASTEERYDFIRRKYELKEFS 129

Query: 133 NFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNS 192
           N DEQ +  P+P       + S +  S DKK YEKQATRHRIG AFRNSWGRK+SE K++
Sbjct: 130 NCDEQ-MSSPFPGSISSLPTPSNNCPSQDKKQYEKQATRHRIGNAFRNSWGRKDSEHKHT 188

Query: 193 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVW 252
           KK+ SL  MVEF+GLIKVNVVKGTNLAVRDVMTSDPYVI++LG Q+V+TRVIK+NLNP+W
Sbjct: 189 KKSYSLAGMVEFIGLIKVNVVKGTNLAVRDVMTSDPYVIISLGQQSVRTRVIKNNLNPIW 248

Query: 253 NESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           NESLMLSIPE IPPLKVLVYDKDTFTTDDFMG+AEIDIQPLV AA+A E         LG
Sbjct: 249 NESLMLSIPEQIPPLKVLVYDKDTFTTDDFMGEAEIDIQPLVAAAKAYENSTITESMQLG 308

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546368|ref|XP_003541598.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/308 (69%), Positives = 252/308 (81%), Gaps = 8/308 (2%)

Query: 1   MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60
           M+ QH N + K+V  P+ R+ +L+   GN+ CADCG+P+P+WVS S GVFICIKCSGIHR
Sbjct: 1   MSIQHENPETKDVICPQKRIADLMHHAGNKFCADCGTPEPRWVSSSLGVFICIKCSGIHR 60

Query: 61  SLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSD 120
           SLGVHISKVLS+KLDEWT+EQVDALA++GGN  +NKKYEA  P N++KP P+S I+ERS+
Sbjct: 61  SLGVHISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSE 120

Query: 121 FIRRKYEKLEFFNFDEQALLCPYPAPHRRS-------SSSSTSSSSHDKKHYEKQATRHR 173
           FIRRKYE  +F + D+  L CP      RS       SS+S  +S  DKK  EKQ ++HR
Sbjct: 121 FIRRKYEMQQFVDCDDN-LSCPIIPSQGRSISLALAQSSTSYYNSFMDKKPSEKQQSKHR 179

Query: 174 IGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILA 233
           IG AFRNSWGRK+SE K +KK+ SL  MVEFVGLIKVNVVKGT+LA+RDVMTSDPYVIL+
Sbjct: 180 IGNAFRNSWGRKDSEHKAAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILS 239

Query: 234 LGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
           LGHQ+VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF+TDDFMG+AEIDIQPL
Sbjct: 240 LGHQSVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPL 299

Query: 294 VTAARACE 301
           V AA+A E
Sbjct: 300 VIAAKAYE 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555032|ref|XP_003545843.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/304 (69%), Positives = 246/304 (80%), Gaps = 8/304 (2%)

Query: 5   HANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGV 64
           HA      ++GP+ RLENL+   GN+ CADCG+ +P+WVS S GVFICIKCSGIHRSLGV
Sbjct: 8   HAEKQLAYMAGPQKRLENLMHHAGNKFCADCGTTEPRWVSSSFGVFICIKCSGIHRSLGV 67

Query: 65  HISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRR 124
           HISKVLS+KLDEWT+EQVDALA++GGN  +NKKYEA  P N++KP P+S I+ERS+FIRR
Sbjct: 68  HISKVLSLKLDEWTDEQVDALAKLGGNTLLNKKYEACLPSNIRKPKPHSSIEERSEFIRR 127

Query: 125 KYEKLEFFNFDEQALLCPYPAPHRRS-------SSSSTSSSSHDKKHYEKQATRHRIGIA 177
           KYE  +F  +D+  L CP      RS       SS+S  +S  D K  EK  ++HRIG  
Sbjct: 128 KYEMQQFIGYDD-GLSCPIVPSQGRSISLALAQSSTSYYNSFMDNKPSEKHQSKHRIGNT 186

Query: 178 FRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ 237
           FRNSWGRK+SE K++KK+ SL  MVEFVGLIKVNVVKGT+LA+RDVMTSDPYVIL+LGHQ
Sbjct: 187 FRNSWGRKDSEHKSAKKSTSLAGMVEFVGLIKVNVVKGTHLAIRDVMTSDPYVILSLGHQ 246

Query: 238 TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 297
           +VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF+TDDFMG+AEIDIQPLV AA
Sbjct: 247 SVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVIAA 306

Query: 298 RACE 301
           +A E
Sbjct: 307 KAYE 310

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456691|ref|XP_003598626.1| ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|355487674|gb|AES68877.1| ADP-ribosylation factor GTPase-activating protein [Medicago truncatula] gi|388514945|gb|AFK45534.1| unknown [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/305 (70%), Positives = 258/305 (84%), Gaps = 6/305 (1%)

Query: 13  VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSV 72
           +SGP+ RL+NL+RQ GN+ CADCGS +PKWVS S GVFICIKCSGIHRSLGVHISKVLS+
Sbjct: 47  LSGPQERLDNLMRQAGNKFCADCGSSEPKWVSSSLGVFICIKCSGIHRSLGVHISKVLSL 106

Query: 73  KLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFF 132
            LD+WT+EQVD+L  +GGN  +NKKYEA  P  +KKP PNS I+ERSDFIRRKYE  +F 
Sbjct: 107 NLDDWTDEQVDSLVNLGGNTLINKKYEACVPSYVKKPKPNSSIEERSDFIRRKYELQQFL 166

Query: 133 NFDEQALLCPY-PAPHRRSSSSSTSSSSH----DKKHYEKQATRHRIGIAFRNSWGRKES 187
           +  E+ L+CP+ P+  R +SSS +SSSS+    +KK Y+KQ TR+RIG++FRNSWGRK+S
Sbjct: 167 D-SEENLICPFIPSHSRTTSSSHSSSSSYNPPQEKKRYDKQTTRNRIGLSFRNSWGRKDS 225

Query: 188 ESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSN 247
           ESK++KK+NSL  MVEFVGLIKVNVVKGTNLA+RD++TSDPYVIL+LGHQ+VKTRVIK+N
Sbjct: 226 ESKSTKKSNSLAGMVEFVGLIKVNVVKGTNLAIRDIVTSDPYVILSLGHQSVKTRVIKNN 285

Query: 248 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 307
           LNPVWNESLMLSIPENIPPLK++VYDKD+F  DDFMG+AEIDIQPLV+AA+A E    M 
Sbjct: 286 LNPVWNESLMLSIPENIPPLKIIVYDKDSFKNDDFMGEAEIDIQPLVSAAKAYEKSSIME 345

Query: 308 PCNLG 312
              LG
Sbjct: 346 SMQLG 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506926|ref|XP_003522224.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 210/295 (71%), Positives = 244/295 (82%), Gaps = 6/295 (2%)

Query: 12  NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLS 71
           ++  P+ RL+NL+ Q GN++CADCGS +PKWVS S GVFICIKCSGIHRSLGVHISKVLS
Sbjct: 10  DIGRPQKRLDNLMLQAGNKYCADCGSLEPKWVSSSHGVFICIKCSGIHRSLGVHISKVLS 69

Query: 72  VKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF 131
           +KLDEWT+EQVDAL + GGN  +N KYEA  P N+KKP PNS I+ERSDFIRRKYE L+F
Sbjct: 70  LKLDEWTDEQVDALVKFGGNTVINMKYEACLPSNIKKPKPNSSIEERSDFIRRKYEFLQF 129

Query: 132 FNFDEQALLCPYPAPHRRSSSSSTSSSS-----HDKKHYEKQATRHRIGIAFRNSWGRKE 186
            + +E  L CP+   H R SS S  SSS      DKKHY+KQ T+  IG  FRNSWGRK+
Sbjct: 130 LDIEEN-LSCPFVPSHARCSSYSERSSSSNNFPQDKKHYDKQETKSLIGSTFRNSWGRKD 188

Query: 187 SESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKS 246
           SE K+SKK+NSL  M+EF+GLIKVNVVKGTNL +RDVMTSDPYVI++LGHQ+VKTRVIKS
Sbjct: 189 SEHKSSKKSNSLAGMIEFIGLIKVNVVKGTNLVIRDVMTSDPYVIISLGHQSVKTRVIKS 248

Query: 247 NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACE 301
           +LNPVWNESLMLSIP+NIP LKVLVYDKD F+TDDFMG AEIDIQPLV+AA+A E
Sbjct: 249 SLNPVWNESLMLSIPDNIPLLKVLVYDKDIFSTDDFMGKAEIDIQPLVSAAKAYE 303

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465923|ref|XP_002270290.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera]

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/302 (68%), Positives = 232/302 (76%), Gaps = 18/302 (5%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           SGPR RLENLL Q GN  CADCGSPDPKWVS+S GVFICIKCSG+HRSLG H+SKVLS+K
Sbjct: 40  SGPRGRLENLLCQSGNNICADCGSPDPKWVSVSLGVFICIKCSGVHRSLGAHVSKVLSIK 99

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEWT+EQVD L  MGGN   N KYEA  P  ++KP P+S  +ERSDFIRRKYE  +FFN
Sbjct: 100 LDEWTDEQVDTLTGMGGNSEANMKYEASIPDYIRKPRPDSSTEERSDFIRRKYEMQQFFN 159

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRI---GIAFRNSWGRKESESK 190
            DEQ + CP+P                +KKHYEKQ T HR+   G+AFRNSW RKE E K
Sbjct: 160 SDEQ-MFCPFPP--------------QEKKHYEKQTTTHRLHGLGLAFRNSWRRKEPEHK 204

Query: 191 NSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNP 250
             KK++S   M+EFVGLIKVNVVKGTNLAVRDVMTSDPYV+LALG Q+VKTRVIK+NLNP
Sbjct: 205 PVKKSSSSAGMIEFVGLIKVNVVKGTNLAVRDVMTSDPYVLLALGQQSVKTRVIKNNLNP 264

Query: 251 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCN 310
           VWNE LMLSIPE IPPL+V VYDKDTF+TDDFMG+AEIDIQPLV+AA A E      P  
Sbjct: 265 VWNERLMLSIPEQIPPLRVFVYDKDTFSTDDFMGEAEIDIQPLVSAAIAHENSTLNEPME 324

Query: 311 LG 312
            G
Sbjct: 325 FG 326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090359|emb|CBI40178.3| unnamed protein product [Vitis vinifera]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/302 (68%), Positives = 232/302 (76%), Gaps = 18/302 (5%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           SGPR RLENLL Q GN  CADCGSPDPKWVS+S GVFICIKCSG+HRSLG H+SKVLS+K
Sbjct: 78  SGPRGRLENLLCQSGNNICADCGSPDPKWVSVSLGVFICIKCSGVHRSLGAHVSKVLSIK 137

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEWT+EQVD L  MGGN   N KYEA  P  ++KP P+S  +ERSDFIRRKYE  +FFN
Sbjct: 138 LDEWTDEQVDTLTGMGGNSEANMKYEASIPDYIRKPRPDSSTEERSDFIRRKYEMQQFFN 197

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRI---GIAFRNSWGRKESESK 190
            DEQ + CP+P                +KKHYEKQ T HR+   G+AFRNSW RKE E K
Sbjct: 198 SDEQ-MFCPFPP--------------QEKKHYEKQTTTHRLHGLGLAFRNSWRRKEPEHK 242

Query: 191 NSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNP 250
             KK++S   M+EFVGLIKVNVVKGTNLAVRDVMTSDPYV+LALG Q+VKTRVIK+NLNP
Sbjct: 243 PVKKSSSSAGMIEFVGLIKVNVVKGTNLAVRDVMTSDPYVLLALGQQSVKTRVIKNNLNP 302

Query: 251 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCN 310
           VWNE LMLSIPE IPPL+V VYDKDTF+TDDFMG+AEIDIQPLV+AA A E      P  
Sbjct: 303 VWNERLMLSIPEQIPPLRVFVYDKDTFSTDDFMGEAEIDIQPLVSAAIAHENSTLNEPME 362

Query: 311 LG 312
            G
Sbjct: 363 FG 364

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297829354|ref|XP_002882559.1| hypothetical protein ARALYDRAFT_478135 [Arabidopsis lyrata subsp. lyrata] gi|297328399|gb|EFH58818.1| hypothetical protein ARALYDRAFT_478135 [Arabidopsis lyrata subsp. lyrata]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/301 (69%), Positives = 246/301 (81%), Gaps = 9/301 (2%)

Query: 14  SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           S PR RLE LL+QPGN++CADCGSP+PKWVSLS GVFICIKCSG+HRSLGVHISKVLSVK
Sbjct: 42  SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVK 101

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           LDEWT++QVD L   GGN AVN+++EA      KKP P+S  +ER+DFIR+KYE+ +F +
Sbjct: 102 LDEWTDDQVDMLVGYGGNTAVNQRFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMD 161

Query: 134 FDEQALLCPYPAPHRRSSSS-STSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNS 192
             + AL CPY  P R ++S  S  S+SH       ++T++RIG AFRNSWGR+ES+ K  
Sbjct: 162 PKDGAL-CPYQQPSRTNTSPPSLCSASH-------RSTKNRIGHAFRNSWGRRESDHKGP 213

Query: 193 KKANSLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVW 252
           KK+NS+  MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALG Q+VKTRVIK+NLNPVW
Sbjct: 214 KKSNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVW 273

Query: 253 NESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
           NE+LMLSIPE +PPLKVLVYDKDTF+TDDFMG+AEIDIQPLV+AA+A ET     P  LG
Sbjct: 274 NETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLG 333

Query: 313 N 313
           +
Sbjct: 334 S 334

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.933	0.761	0.653	4.6e-101
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.372	0.348	0.593	4.2e-71
TAIR|locus:2127338	337	ZAC [Arabidopsis thaliana (tax	0.372	0.347	0.593	5.3e-71
DICTYBASE|DDB_G0275603	593	DDB_G0275603 "Arf GTPase activ	0.369	0.195	0.529	3.4e-29
UNIPROTKB|Q5EA00	429	SMAP2 "Stromal membrane-associ	0.378	0.277	0.487	1.7e-27
UNIPROTKB|Q8WU79	429	SMAP2 "Stromal membrane-associ	0.378	0.277	0.487	1.7e-27
UNIPROTKB|B2DCZ7	429	SMAP1L "Uncharacterized protei	0.378	0.277	0.487	1.7e-27
MGI|MGI:1917030	428	Smap2 "stromal membrane-associ	0.378	0.278	0.487	1.7e-27
UNIPROTKB|F1LMJ5	432	Smap2 "Protein Smap2" [Rattus	0.385	0.280	0.496	2.8e-27
UNIPROTKB|F1NMV2	224	SMAP2 "Stromal membrane-associ	0.378	0.531	0.463	4.5e-27

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 980 (350.0 bits), Expect = 4.6e-101, Sum P(2) = 4.6e-101
 Identities = 196/300 (65%), Positives = 228/300 (76%)

Query:    14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
             S PR RLE LL+QPGN++CADCGSP+PKWVSLS GVFICIKCSG+HRSLGVHISKVLSVK
Sbjct:    44 SDPRDRLEKLLKQPGNKYCADCGSPEPKWVSLSLGVFICIKCSGVHRSLGVHISKVLSVK 103

Query:    74 LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
             LDEWT++QVD L   GGN AVN+++EA      KKP P+S  +ER+DFIR+KYE+ +F +
Sbjct:   104 LDEWTDDQVDMLVGYGGNTAVNERFEACNIDQSKKPKPDSTNEERNDFIRKKYEQHQFMD 163

Query:   134 FDEQALLCPYPAPHRRXXXXXXXXXXHDKKHYEKQATRHRIGIAFRNSWGRXXXXXXXXX 193
               + AL C Y  P R               H   ++T++RIG AFRNSWGR         
Sbjct:   164 PKDGAL-CTYQQPSRTNTSPPSLCSA---SH---RSTKNRIGHAFRNSWGRRESDHKGPK 216

Query:   194 XXXXLVAMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN 253
                 +  MVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALG Q+VKTRVIK+NLNPVWN
Sbjct:   217 KSNSMAGMVEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWN 276

Query:   254 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLGN 313
             E+LMLSIPE +PPLKVLVYDKDTF+TDDFMG+AEIDIQPLV+AA+A ET     P  LG+
Sbjct:   277 ETLMLSIPEPMPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGS 336

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 4.2e-71, Sum P(2) = 4.2e-71
 Identities = 70/118 (59%), Positives = 86/118 (72%)

Query:    14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
             SG R R+ +LL QP NR CADCG+ DPKW S + GVFIC+KC G+HRSLG HISKVLSV 
Sbjct:    13 SGKR-RIRDLLNQPDNRVCADCGASDPKWASANIGVFICLKCCGVHRSLGTHISKVLSVT 71

Query:    74 LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF 131
             LDEW++E+VD++ E+GGN + N  YEA+ P    KP P+   D+R  FIR KYE  EF
Sbjct:    72 LDEWSDEEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMRFIRAKYELQEF 129

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2127338 ZAC [Arabidopsis thaliana (taxid:3702)]

 Score = 379 (138.5 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 70/118 (59%), Positives = 87/118 (73%)

Query:    14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
             SG R R+ +LL Q  NR CADCG+PDPKW S + GVFIC+KC G+HRSLG HISKVLSV 
Sbjct:    13 SGKR-RIRDLLTQSDNRVCADCGAPDPKWASANIGVFICLKCCGVHRSLGSHISKVLSVT 71

Query:    74 LDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF 131
             LDEW++E+VD++ E+GGN + N  YEA+ P    KP P++  D+R  FIR KYE  EF
Sbjct:    72 LDEWSDEEVDSMIEIGGNASANSIYEAFIPEGSSKPGPDASHDQRMRFIRSKYEHQEF 129

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006605 "protein targeting" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016197 "endosomal transport" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

DICTYBASE|DDB_G0275603 DDB_G0275603 "Arf GTPase activating protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 330 (121.2 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 62/117 (52%), Positives = 79/117 (67%)

Query:    19 RLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWT 78
             RLE LL+   NR+CADC S +P+W S + G+F+CIKCSGIHRSLGVHISKV SV LD+W 
Sbjct:    14 RLEELLKLEENRYCADCSSKNPRWCSTNLGIFVCIKCSGIHRSLGVHISKVRSVTLDKWN 73

Query:    79 NEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD 135
              E +  + + GGN  VN+ YE + P + +KP PN+       FIR KYE+ EF   D
Sbjct:    74 FELLQQMVD-GGNKKVNQIYEEFMPAHYRKPDPNTDTHTLEQFIRSKYERKEFMRRD 129

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|Q5EA00 SMAP2 "Stromal membrane-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
             SV LD+WT EQ+  + EMG   A N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAYLPETFRRPQIDHAVE---GFIRDKYEKKK 122

Query:   131 FFN 133
             + +
Sbjct:   123 YMD 125

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

UNIPROTKB|Q8WU79 SMAP2 "Stromal membrane-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
             SV LD+WT EQ+  + EMG   A N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 122

Query:   131 FFN 133
             + +
Sbjct:   123 YMD 125

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|B2DCZ7 SMAP1L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
             SV LD+WT EQ+  + EMG   A N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 122

Query:   131 FFN 133
             + +
Sbjct:   123 YMD 125

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

MGI|MGI:1917030 Smap2 "stromal membrane-associated GTPase-activating protein 2" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 60/123 (48%), Positives = 82/123 (66%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
             SV LD+WT EQ+  + EMG   A N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 122

Query:   131 FFN 133
             + +
Sbjct:   123 YMD 125

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1LMJ5 Smap2 "Protein Smap2" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/125 (49%), Positives = 81/125 (64%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPS--PNSFIDERSDFIRRKYEK 128
             SV LD+WT EQ+  + EMG   A N+ YEAY P   ++P   P  F      FIR KYEK
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAYLPETFRRPQIDPYPFWTVEG-FIRDKYEK 124

Query:   129 LEFFN 133
              ++ +
Sbjct:   125 KKYMD 129

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

UNIPROTKB|F1NMV2 SMAP2 "Stromal membrane-associated protein 2" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 57/123 (46%), Positives = 84/123 (68%)

Query:    11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
             ++V   +A L +LL +  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct:     7 RDVERYQAVLGSLLSEEENKYCADCQAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 66

Query:    71 SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
             SV LD+WT EQ+  + EMG   A N+ YEA+ P N ++P  +  ++    FIR KYEK +
Sbjct:    67 SVNLDQWTQEQIQCMQEMGNGKA-NRLYEAFLPENFRRPQTDQAVE---GFIRDKYEKKK 122

Query:   131 FFN 133
             + +
Sbjct:   123 YMD 125

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8L7A4	AGD11_ARATH	No assigned EC number	0.6877	0.9299	0.7584	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	314
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	6e-57
pfam01412	117	pfam01412, ArfGap, Putative GTPase activating prot	5e-51
smart00105	119	smart00105, ArfGap, Putative GTP-ase activating pr	5e-39
COG5347	319	COG5347, COG5347, GTPase-activating protein that r	6e-36
cd00030	102	cd00030, C2, C2 domain	7e-24
pfam00168	85	pfam00168, C2, C2 domain	2e-22
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-20
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-20
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	6e-20
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	2e-18
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	1e-17
PLN03114	395	PLN03114, PLN03114, ADP-ribosylation factor GTPase	7e-15
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	8e-15
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-14
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	2e-14
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	4e-14
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	4e-13
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	5e-13
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	3e-12
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	3e-12
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	3e-12
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	4e-12
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	7e-12
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	7e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	1e-11
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	3e-11
cd04018	151	cd04018, C2C_Ferlin, C2 domain third repeat in Fer	4e-11
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	1e-10
cd04048	120	cd04048, C2A_Copine, C2 domain first repeat in Cop	1e-10
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	2e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-10
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	2e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-10
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	2e-09
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	2e-09
PLN03131	705	PLN03131, PLN03131, hypothetical protein; Provisio	3e-09
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	3e-09
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	5e-09
cd04054	121	cd04054, C2A_Rasal1_RasA4, C2 domain first repeat	6e-09
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	2e-08
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	3e-08
PLN03119	648	PLN03119, PLN03119, putative ADP-ribosylation fact	4e-08
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	5e-08
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	7e-08
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	8e-08
cd04032	127	cd04032, C2_Perforin, C2 domain of Perforin	1e-07
cd08521	123	cd08521, C2A_SLP, C2 domain first repeat present i	2e-07
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	2e-07
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	5e-07
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	5e-07
cd08404	136	cd08404, C2B_Synaptotagmin-4, C2 domain second rep	6e-07
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	6e-07
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	7e-07
cd04047	110	cd04047, C2B_Copine, C2 domain second repeat in Co	7e-07
cd08393	125	cd08393, C2A_SLP-1_2, C2 domain first repeat prese	7e-07
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	1e-06
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	1e-06
cd08382	123	cd08382, C2_Smurf-like, C2 domain present in Smad	1e-06
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	1e-06
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-06
cd04020	162	cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat	6e-06
cd08373	127	cd08373, C2A_Ferlin, C2 domain first repeat in Fer	6e-06
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	7e-06
cd08410	135	cd08410, C2B_Synaptotagmin-17, C2 domain second re	8e-06
cd04016	121	cd04016, C2_Tollip, C2 domain present in Toll-inte	1e-05
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	1e-05
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	2e-05
cd04021	125	cd04021, C2_E3_ubiquitin_ligase, C2 domain present	3e-05
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	9e-05
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-04
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	1e-04
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	1e-04
cd08690	155	cd08690, C2_Freud-1, C2 domain found in 5' repress	1e-04
cd08407	138	cd08407, C2B_Synaptotagmin-13, C2 domain second re	1e-04
cd08383	117	cd08383, C2A_RasGAP, C2 domain (first repeat) of R	1e-04
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	3e-04
cd08678	126	cd08678, C2_C21orf25-like, C2 domain found in the	3e-04
cd04029	125	cd04029, C2A_SLP-4_5, C2 domain first repeat prese	3e-04
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	5e-04
PLN02964	644	PLN02964, PLN02964, phosphatidylserine decarboxyla	0.002
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	0.002
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	0.002
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	0.003

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  180 bits (458), Expect = 6e-57
 Identities = 64/108 (59%), Positives = 81/108 (75%)

Query: 205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 264
           +GL+KV VV+GTNLAVRD  +SDPYV+L LG+Q VKTRVIK NLNPVWNE L LS+P  +
Sbjct: 1   LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPM 60

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPCNLG 312
            PLK+ V+DKDTF+ DD MG+AEID++PLV AA+      +     + 
Sbjct: 61  APLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIK 108

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf

 Score =  163 bits (416), Expect = 5e-51
 Identities = 58/115 (50%), Positives = 78/115 (67%), Gaps = 2/115 (1%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           +  L  L + PGN+ CADCG+P+P W SL+ G+FICI+CSG+HRSLGVHISKV S+ LD+
Sbjct: 1   KRLLRELRKLPGNKVCADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK 60

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF 131
           WT EQ++ +   GGN   N+ +EA  P   K P  +S  ++R  FIR KY +  F
Sbjct: 61  WTPEQLEFMKA-GGNKRANEFWEANLPPP-KPPPSSSDREKRESFIRAKYVEKLF 113

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 117

>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the small GTPase, ARF

 Score =  133 bits (336), Expect = 5e-39
 Identities = 53/112 (47%), Positives = 70/112 (62%), Gaps = 1/112 (0%)

Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           L+ L   PGN+ C DCG+P+P W S++ GVF+CI+CSGIHRSLGVHISKV S+ LD WT 
Sbjct: 1   LKLLRSIPGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTE 60

Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEF 131
           E++  L + GGN   N  +E+       KP  +    +   FI  KYE+  F
Sbjct: 61  EELRLL-QKGGNENANSIWESNLDDFSLKPPDDDDQQKYESFIAAKYEEKLF 111

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs. Length = 119

>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

 Score =  131 bits (331), Expect = 6e-36
 Identities = 57/146 (39%), Positives = 78/146 (53%), Gaps = 6/146 (4%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           R  L+ L     N+ CADCG+P+P W S++ GVF+CI C+G+HRSLGVHISKV S+ LD 
Sbjct: 8   RKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDN 67

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAY-TPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD 135
           WT E++  + E+GGN   N+ YE       L              +IR+KYE  +F +  
Sbjct: 68  WTEEELRRM-EVGGNSNANRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDDS 126

Query: 136 EQALLCPYPAPHRRSSSSSTSSSSHD 161
                 P       +SS+ T  S  D
Sbjct: 127 SS----PSDFSSFSASSTRTVDSVDD 148

Length = 319

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 93.3 bits (232), Expect = 7e-24
 Identities = 38/89 (42%), Positives = 57/89 (64%), Gaps = 3/89 (3%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           ++V V++  NL  +D+   SDPYV ++LG  Q  KT+V+K+ LNPVWNE+    + +   
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 266 P-LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
             L V V+DKD F+ DDF+G+ EI +  L
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSEL 89

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 88.9 bits (221), Expect = 2e-22
 Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV---KTRVIKSNLNPVWNESLMLSI-PE 262
           ++V V+   NL  +D+   SDPYV ++LG Q     KT+V+K+ LNPVWNE+    +   
Sbjct: 1   LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAE 287
            +  L++ VYD D F  DDF+G+  
Sbjct: 61  ELAELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 84.8 bits (210), Expect = 1e-20
 Identities = 36/97 (37%), Positives = 53/97 (54%), Gaps = 5/97 (5%)

Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV---KTRVIKSNLNPVWNESLMLSI-P 261
            + V ++   NL  +D    SDPYV ++L        KT+V+K+ LNPVWNE+    + P
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 262 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
             +  L++ VYDKD F  DDF+G   I +  L+   R
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGR 97

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 83.9 bits (208), Expect = 4e-20
 Identities = 40/91 (43%), Positives = 54/91 (59%), Gaps = 2/91 (2%)

Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENI 264
            + +++ +G NLA RD   TSDPYV    G +TV K++ I  NLNPVW+E   L I +  
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295
            PL + V+D D   TDDFMG A +D+  L  
Sbjct: 61  QPLYIKVFDYDRGLTDDFMGSAFVDLSTLEL 91

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 83.1 bits (206), Expect = 6e-20
 Identities = 35/95 (36%), Positives = 56/95 (58%), Gaps = 13/95 (13%)

Query: 206 GLIKVNVVKGTNLAVRDVM-------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLML 258
           G+++++V++  +L  +D          SDPYVI+ +G QT K++VIK NLNP WNE    
Sbjct: 1   GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEA 60

Query: 259 SIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
            + E   P   L++ ++D+D    DDF+G   ID+
Sbjct: 61  VVDEV--PGQELEIELFDEDP-DKDDFLGRLSIDL 92

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 79.4 bits (196), Expect = 2e-18
 Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 206 GLIKVNVVKGTNLAVRDVM---TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           G+++V+VV+  +LA +D      SDPY IL++G Q  KT+ I + LNP WN      I  
Sbjct: 1   GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS 60

Query: 263 NIPP-LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 308
                LK++++DKD F   D++G+ +I ++ +       +     S 
Sbjct: 61  AQNQLLKLILWDKDRFAGKDYLGEFDIALEEVFA-----DGKTGQSD 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 35/97 (36%), Positives = 53/97 (54%), Gaps = 9/97 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVMT--SDPYVILAL---GHQTVKTRVIKSNLNPVWNES-LMLS 259
           G++ V + + T+L   D  T  SDPYV  +    G     TR+I+ +LNPVW E+  +L 
Sbjct: 1   GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV 60

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            P+ +     L   ++D D FT DD +G  EID++ L
Sbjct: 61  TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

 Score = 74.1 bits (181), Expect = 7e-15
 Identities = 34/83 (40%), Positives = 52/83 (62%)

Query: 11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
          +N++   +  + L  +  N+ C DC + +P W S++ G+F+CI CS +HRSLGVHIS V 
Sbjct: 4  ENLNDKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVR 63

Query: 71 SVKLDEWTNEQVDALAEMGGNIA 93
          S  LD W++EQ+  +   G N A
Sbjct: 64 STNLDSWSSEQLKMMIYGGNNRA 86

Length = 395

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 69.5 bits (171), Expect = 8e-15
 Identities = 32/89 (35%), Positives = 50/89 (56%), Gaps = 6/89 (6%)

Query: 207 LIKVNVVKGTNLAVRDVMT-SDPYVILALGHQTVKTR--VIKSNLNPVWNESLML--SIP 261
           L++V VV+  NL  +D    SDPY+ + LG + +  R   I + LNPV+ +   L  ++P
Sbjct: 1   LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLP 60

Query: 262 ENIPPLKVLVYDKDTFTTDDFMGDAEIDI 290
            N   LK+ V D D   +DD +G+  ID+
Sbjct: 61  GN-SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 68.4 bits (168), Expect = 2e-14
 Identities = 38/89 (42%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 208 IKVNVVKGTNLAVRDVMT-SDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIP 265
           + V+V+   NL   D    SDP+V   L  + V KT+ IK  LNPVWNES  + +P  + 
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVR 60

Query: 266 P-LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
             LKV VYD D    DD +G A ID+  L
Sbjct: 61  AVLKVEVYDWDRGGKDDLLGSAYIDLSDL 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 68.5 bits (168), Expect = 2e-14
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 8/107 (7%)

Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLML 258
           +++V V+ G +LA +D+   SDPYV ++L          +V+T+ IK  LNP WNE    
Sbjct: 1   ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 259 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS 305
            +      L   V+D++  T DDF+G  E+ +  L T     E   +
Sbjct: 61  RVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYT 107

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 66.9 bits (164), Expect = 4e-14
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)

Query: 227 DPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP--PLKVLVYDKDTFTTDDFMG 284
           DP+VI++ G +  +T   +  LNPV+NE L   +  +     ++  V DKD F+ +D++ 
Sbjct: 27  DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

Query: 285 DAEIDIQPLVTAAR 298
              + +Q L+ AA 
Sbjct: 87  TGSLSVQELLNAAP 100

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 12/79 (15%)

Query: 226 SDPYVILALGHQTVKTRVIKSNLNPVWNESLM---LSIPENI------PPLKVL-VYDKD 275
           SDP+  ++  +Q+ +T VIK  L+P W+++L+   + +  +       PPL V+ ++D+D
Sbjct: 22  SDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD 81

Query: 276 TFTTDDFMGDAEIDIQPLV 294
           +   D+F+G +    +PLV
Sbjct: 82  SVGKDEFLGRSV--AKPLV 98

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 64.3 bits (157), Expect = 5e-13
 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 227 DPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPP----LKVLVYDKDTFTTDD 281
           DPYVI+    Q  K++V K    NP WNE    ++          L + + DKD F+ DD
Sbjct: 23  DPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDD 82

Query: 282 FMGDAEIDIQPLVTAAR 298
           F+G+A I ++ L     
Sbjct: 83  FIGEATIHLKGLFEEGV 99

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 62.3 bits (152), Expect = 3e-12
 Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 2/86 (2%)

Query: 207 LIKVNVVKGTNLAVRDVMT-SDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI-PENI 264
           ++ + +V+G NL   D    SDPYV   LG++  K++V    LNP W E   L +  +  
Sbjct: 1   VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQS 60

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEIDI 290
             L++ V+DKDT   D+F+G  EID+
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDL 86

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 62.8 bits (153), Expect = 3e-12
 Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 2/105 (1%)

Query: 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 260
              +G + V +V+G +L   +    SDPY  +++G Q  KT+V+   LNP WN S+   +
Sbjct: 11  ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFV 70

Query: 261 PE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPI 304
            +     L + V+D+D F+ DDF+G  EI +  ++   +  + PI
Sbjct: 71  KDLEQDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPI 115

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 61.9 bits (151), Expect = 3e-12
 Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 4/91 (4%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 264
           G ++V V++ + LA  D+   SDP+ +L L +  ++T  I   LNP WN+     I +  
Sbjct: 1   GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIH 60

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295
             L+V VYD+D     +F+G   I   PL++
Sbjct: 61  DVLEVTVYDEDKDKKPEFLGKVAI---PLLS 88

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 206 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVI-KSNLNPVWNESLMLSIPEN 263
           G + V V+K  NL  +  +   DPY +L +G  T KT+   +   +P W+E L   I E+
Sbjct: 1   GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITED 60

Query: 264 IPP-LKVLVYDKDTFTTDDFMGDAEIDIQP 292
             P LKV V+D D     D +GD E+D+ P
Sbjct: 61  KKPILKVAVFD-DDKRKPDLIGDTEVDLSP 89

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 60.8 bits (148), Expect = 7e-12
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 6/93 (6%)

Query: 208 IKVNVVKGTNLAV--RDVMTSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPENI 264
           +KV VV   +L V  R    +D +V +  G  T KT V+K +LNPVWN E     + +  
Sbjct: 1   LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 265 ---PPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 294
               PL++ V D DT++ +D +G   ID+ PL+
Sbjct: 61  LQDEPLQIRVMDHDTYSANDAIGKVYIDLNPLL 93

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 61.3 bits (149), Expect = 7e-12
 Identities = 32/87 (36%), Positives = 47/87 (54%), Gaps = 2/87 (2%)

Query: 212 VVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP-PLKV 269
           V++  +LA +D   TSDP+V +    QT++T V+K +  P WNE     + E    PL V
Sbjct: 6   VLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSV 65

Query: 270 LVYDKDTFTTDDFMGDAEIDIQPLVTA 296
            V+D D  + +DF+G     IQ L  A
Sbjct: 66  EVWDWDLVSKNDFLGKVVFSIQTLQQA 92

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 60.7 bits (148), Expect = 1e-11
 Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           L+ V V++ TN+   D++ T D YV L L     +  +T+ IK+++NPVWNE+    I  
Sbjct: 1   LLTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS 60

Query: 263 NIPP-LKVLVYDKDTFTTDDFMGDAEIDI 290
            +   L++ V D+D    DD +G    D+
Sbjct: 61  QVKNVLELTVMDEDYV-MDDHLGTVLFDV 88

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 9/88 (10%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 259
             I VN++K  NL   D+  TSDPYV + L +     +  KT + K  LNPV+NES + +
Sbjct: 15  NRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN 74

Query: 260 IP-ENI--PPLKVLVYDKDTFTTDDFMG 284
           IP E +    L + V DKD  + +D +G
Sbjct: 75  IPLERLRETTLIITVMDKDRLSRNDLIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175985 cd04018, C2C_Ferlin, C2 domain third repeat in Ferlin

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 13/103 (12%)

Query: 194 KANSLVAM-VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVW 252
           +A  L  M    +  +K   +      V      DPYV ++   Q VKT V K++ NP W
Sbjct: 8   RAEDLPQMDSGIMANVKKAFLGEKKELV------DPYVEVSFAGQKVKTSVKKNSYNPEW 61

Query: 253 NESLMLSIPENIPPL----KVLVYDKDTFTTDDFMGDAEIDIQ 291
           NE   +  PE  PPL    K+ + D D    DD +G   ID+ 
Sbjct: 62  NEQ--IVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLS 102

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 151

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 22/84 (26%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 210 VNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLK 268
           V+V     L+ +D    +DPYVI+    ++V++ V K  L+P ++   +    +   P+K
Sbjct: 7   VHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIK 66

Query: 269 VLVYDKDTFTTDDFMGDAEIDIQP 292
           + V++ +    D+F+G A +   P
Sbjct: 67  IQVWNSNLL-CDEFLGQATLSADP 89

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine

 Score = 57.6 bits (140), Expect = 1e-10
 Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 213 VKGTNLAVRDVMT-SDPYVILALGHQTVK-------TRVIKSNLNPVWNESL-MLSIPEN 263
           +   NL  +DV++ SDP+V++ +             T VIK+NLNP +  +  +    E 
Sbjct: 7   ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66

Query: 264 IPPLKVLVYDKDTFTTD----DFMGDAEIDIQPLVTA 296
           +  L+  VYD D+ + D    DF+G+AE  +  +V++
Sbjct: 67  VQKLRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSS 103

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTV--KTRVIKSNLNPVWNESLMLSI 260
           +G++ V +     L   D++  T DPYV  ++ ++    +T+V K   NPVWNE+  + +
Sbjct: 1   IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILV 60

Query: 261 PENIPPLKVLVYDKDTFTTDDFMGDAEID 289
                PL + VYD +    D  +G AE D
Sbjct: 61  NSLTEPLNLTVYDFNDKRKDKLIGTAEFD 89

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 206 GLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
             + V V+K  NL        SDPYV ++L          KT V K  LNPV+NE+    
Sbjct: 14  ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD 73

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMG 284
           +P        L + V DKD+   ++ +G
Sbjct: 74  VPAEQLEEVSLVITVVDKDSVGRNEVIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 57.2 bits (138), Expect = 2e-10
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 12/98 (12%)

Query: 208 IKVNVVKGTNLAVRD-VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP 266
           I + VV    L  +D   TSDPYV + +G    +T+ I  NLNPVWNE        +   
Sbjct: 3   ISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDR 62

Query: 267 LKVLVYDKD---------TFT--TDDFMGDAEIDIQPL 293
           +KV V+D+D          FT  +DDF+G   I+++ L
Sbjct: 63  IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL 100

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 56.6 bits (137), Expect = 3e-10
 Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 7/90 (7%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 261
           G++ V +++  NL  RD   T+DPY  + L      T ++++ K  LNP ++ES +  +P
Sbjct: 16  GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVP 75

Query: 262 ENIPP---LKVLVYDKDTFTTDDFMGDAEI 288
               P   L+VL+YD D F+ D+ +G  E+
Sbjct: 76  PQELPKRTLEVLLYDFDQFSRDECIGVVEL 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 8/87 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLMLS 259
             + V V +  NL   D    SDPYV L L     ++T  KT+ IK  LNPVWNE+    
Sbjct: 13  NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD 72

Query: 260 IPENIPP--LKVLVYDKDTFTTDDFMG 284
           +        L + V+D D  T +DFMG
Sbjct: 73  LKPADKDRRLSIEVWDWDRTTRNDFMG 99

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 16/95 (16%)

Query: 210 VNVVKGTNLAVR-DVMTSDPYV-ILALGHQTVK----TRVIKSNLNPVWNESLMLSIPEN 263
           V V++  +L  R D    +PYV +  L  ++ K    T+ +K  LNP WN++   S   N
Sbjct: 20  VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYS---N 76

Query: 264 IPP-------LKVLVYDKDTFTTDDFMGDAEIDIQ 291
           +         L+V V+D D    +DF+G+  ID+ 
Sbjct: 77  VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLA 111

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional

 Score = 57.9 bits (139), Expect = 3e-09
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 4/107 (3%)

Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           +  L++ P NR C +C S  P++V  +   FIC+ CSGIHR       +V SV + ++T+
Sbjct: 14  IRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREF---THRVKSVSMSKFTS 70

Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKY 126
           + V+AL + GGN    + Y        ++   NS +D+  +FI+  Y
Sbjct: 71  QDVEAL-QNGGNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIY 116

Length = 705

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 210 VNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLS---IPENIPP 266
           V VVK   L      ++DP V + LG+    T+ I+   NP WN+    S   +  +   
Sbjct: 4   VRVVKARGLPA---NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGST-- 58

Query: 267 LKVLVYDKDTFTTDDFMGDAEIDIQ 291
           L+V V+DKD    DDF+G    D+ 
Sbjct: 59  LEVSVWDKDK-AKDDFLGGVCFDLS 82

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 13/92 (14%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQ-----TVKTRVIKSNLNPVWNESLMLS 259
           ++V ++   NL   D   +SDP+V + L   H      T KT+V K  L P+++ES   +
Sbjct: 18  LRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN 77

Query: 260 IP-----ENIPPLKVLVYDKDTFTTDDFMGDA 286
           +P          L   V D D   ++DF G+A
Sbjct: 78  VPPEQCSVEGALLLFTVKDYDLLGSNDFEGEA 109

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 2/101 (1%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPL 267
           + +V+G NL  +D+  +SDPY I+ + ++ + +T  +   LNP W E   + +P     +
Sbjct: 4   IRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTV 63

Query: 268 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP 308
              V D+DT + DD +G   +  + +    R  +  ++++ 
Sbjct: 64  SFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTE 104

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 51.9 bits (125), Expect = 1e-08
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVK---TRVIKSNLNPVWNESLMLSIP 261
             + V +++  +L   D+  TSDPYV + L     K   T+V +  LNPV+NE+    +P
Sbjct: 16  NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVP 75

Query: 262 EN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 290
            +      L   VYD D F+  D +G+  + +
Sbjct: 76  YSELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 14/94 (14%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYV-ILALGHQTVK--TRVIKSNLNPVWNESLMLSIPEN 263
           + + ++K   L  +D   TSDP+V I  L  +  K  T+V + NLNP WNE+ +    E 
Sbjct: 18  LTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF---EG 74

Query: 264 IPPLKVL-------VYDKDTFTTDDFMGDAEIDI 290
            P  K+        V D D F+ +D +G+  + +
Sbjct: 75  FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPL 108

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 51.1 bits (123), Expect = 3e-08
 Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 14/97 (14%)

Query: 206 GLIKVNVVKGTNL----AVRDVMTSDPYV-ILALGHQTVKTRVIKSNLNPVWNESLMLSI 260
           G++++++ K  +L     V  +   DPYV +L  G    +T  I + LNPVW+E L + +
Sbjct: 1   GVLRLHIRKANDLKNLEGVGKI---DPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPV 57

Query: 261 PENIPPLKVL---VYDKDTFTTDDFMGDAEIDIQPLV 294
                P + +   V D +    D  +G  EI++  L+
Sbjct: 58  ---TSPNQKITLEVMDYEKVGKDRSLGSVEINVSDLI 91

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

 Score = 54.1 bits (129), Expect = 4e-08
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           +  L++ P NR C +C S  P++V  +   F+C+ CSGIHR       +V SV + ++T+
Sbjct: 14  IRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREF---THRVKSVSMSKFTS 70

Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKY 126
           ++V+ L + GGN    + Y        ++   NS  +   +FI+  Y
Sbjct: 71  KEVEVL-QNGGNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVY 116

Length = 648

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 2/97 (2%)

Query: 204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPE 262
            VG  +  + + ++      +TSDPY  + L    V +TRVI+++ NPVWNES  +    
Sbjct: 36  LVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVWNESFHIYCAH 95

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARA 299
               ++  V D D       +G A I ++ L++    
Sbjct: 96  YASHVEFTVKDNDVVGA-QLIGRAYIPVEDLLSGEPV 131

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 53.6 bits (129), Expect = 7e-08
 Identities = 29/93 (31%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 205 VGLIKVNVVKGTNLAVRDVM---TSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSI 260
           +G+++V +     L   D     T DPY+ +    + + KTRV K+ LNPVWNE+  + +
Sbjct: 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILL 494

Query: 261 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
                PL + +YD ++F +D  +G  ++D+  L
Sbjct: 495 NSFTDPLNLSLYDFNSFKSDKVVGSTQLDLALL 527

Length = 1227

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 49.5 bits (119), Expect = 8e-08
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 12/90 (13%)

Query: 208 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP- 266
           ++V V++   L        DP V + +G Q   T V K    P +NE        +  P 
Sbjct: 6   VRVRVIEARQLVG---GNIDPVVKVEVGGQKKYTSVKKGTNCPFYNE--YFFFNFHESPD 60

Query: 267 ------LKVLVYDKDTFTTDDFMGDAEIDI 290
                 +K+ VYD  +  +D  +G  ++D+
Sbjct: 61  ELFDKIIKISVYDSRSLRSDTLIGSFKLDV 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175998 cd04032, C2_Perforin, C2 domain of Perforin

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 10/83 (12%)

Query: 208 IKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVIKSNLNPVWNESL-----MLSIP 261
           + V V++ T L   D  TS D YV +  G Q  +T VI +N NP WN +       LS  
Sbjct: 30  LTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSP- 87

Query: 262 ENIPPLKVLVYDKDTFTTDDFMG 284
                L+  V+D+D    DD +G
Sbjct: 88  --GGKLRFEVWDRDNGWDDDLLG 108

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 127

>gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 206 GLIKVNVVKGTNLAVRDV--MTSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLML 258
           G ++V++ +  NLA  D     S+PYV + L      Q+  KT V K+  NPV+NE+L  
Sbjct: 14  GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKY 73

Query: 259 SIPENIPPLKVL---VYDKDTFTTDDFMGDAEIDIQ 291
            I ++    + L   V+  D F  + F+G+ EI + 
Sbjct: 74  HISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLD 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 48.8 bits (117), Expect = 2e-07
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 210 VNVVKGTNL-AVRDVMTSDPYVIL---ALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           + +V+  NL A      SDPYV L       +  KTR I   LNP W+E   L +P   P
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEP 64

Query: 266 P-LKVLVYDKDTFTTDDFMGDA 286
             +   V+D+      D  G A
Sbjct: 65  LWISATVWDRSFVGKHDLCGRA 86

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 50.9 bits (122), Expect = 5e-07
 Identities = 38/98 (38%), Positives = 54/98 (55%), Gaps = 3/98 (3%)

Query: 199  VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-KTRVIKSNLNPVWNESL 256
            V MVE  G + + +  G NL   D    SDP+V L L  ++V KT+V+K  LNPVWNE  
Sbjct: 1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEF 1092

Query: 257  MLSIPENIPP-LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
             + +   +   L + V D D+   +D +G AEID+  L
Sbjct: 1093 TIEVLNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSKL 1130

Length = 1227

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 48.2 bits (115), Expect = 5e-07
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 9/88 (10%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT-----VKTRVIKSNLNPVWNESLMLS 259
           G + V +++  NL   DV   SDPYV + L          KT + K  LNP +NES    
Sbjct: 15  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE 74

Query: 260 IP-ENIPP--LKVLVYDKDTFTTDDFMG 284
           +P E I    L V V D D    +D +G
Sbjct: 75  VPFEQIQKVHLIVTVLDYDRIGKNDPIG 102

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4

 Score = 47.8 bits (114), Expect = 6e-07
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 11/101 (10%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV---KTRVIKSNLNPVWNESLMLSIP 261
           + V V+K  +L   DV   +DPYV + L  G + +   KT V K  LNPV+NES +  IP
Sbjct: 17  LTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIP 76

Query: 262 ----ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
               E+I  ++ LV D D  T ++ +G   +  +   +   
Sbjct: 77  SEELEDI-SVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGH 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 11/87 (12%)

Query: 210 VNVVKGTNLAVRD--VMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESL-MLSIPE 262
           VN+++  +L   D    TSDPYV L L     H+ VKTRV++   NPV++E+     IP 
Sbjct: 20  VNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHK-VKTRVLRKTRNPVYDETFTFYGIPY 78

Query: 263 NIPP---LKVLVYDKDTFTTDDFMGDA 286
           N      L   V   D ++ DD +G+ 
Sbjct: 79  NQLQDLSLHFAVLSFDRYSRDDVIGEV 105

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 47.5 bits (113), Expect = 7e-07
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 9/88 (10%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
           G + + ++K  NL   D+   SDPYV ++L  +       KT V K+ LNP +NE+L+  
Sbjct: 14  GRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD 73

Query: 260 IP-ENIP--PLKVLVYDKDTFTTDDFMG 284
           +P EN+    L + V D D    ++ +G
Sbjct: 74  VPPENVDNVSLIIAVVDYDRVGHNELIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine

 Score = 46.8 bits (112), Expect = 7e-07
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 213 VKGTNLAVRDVM-TSDPYVILALGHQTV------KTRVIKSNLNPVWNESLMLSIPENIP 265
             G  L  +D    SDP++ ++   +        +T VIK+ LNPVW        P  IP
Sbjct: 7   FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-------PFTIP 59

Query: 266 -----------PLKVLVYDKDTFTTDDFMGDAE 287
                      P+K+ VYD D+    D +G+ E
Sbjct: 60  LQKLCNGDYDRPIKIEVYDYDSSGKHDLIGEFE 92

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110

>gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 10/91 (10%)

Query: 210 VNVVKGTNLAVRDV--MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           V+V++  +LA  D     SDPYV   L          KT V K  LNPV+NE+L   +  
Sbjct: 19  VHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVER 78

Query: 263 NIPPLKVL---VYDKDTFTTDDFMGDAEIDI 290
              P +VL   V+ +D+   + F+G+ E+D+
Sbjct: 79  EELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI--PENIP- 265
           V VV   +L  +D   +S  YV L    Q  +TR    +LNPVWNE L+ ++  P  +  
Sbjct: 4   VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSN 63

Query: 266 -PLKVLVYDKDTFT-TDDFMG 284
             L+V VY+         F+G
Sbjct: 64  LVLEVYVYNDRRSGRRRSFLG 84

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 47.0 bits (112), Expect = 1e-06
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 9/91 (9%)

Query: 210 VNVVKGTNLAVRDVMT-SDPYVILALGHQTVK-----TRVIKSNLNPVWNESLMLSIPEN 263
           V +++  NLA  D    SDP+V L L     K     T+V K  LNP +NE     I  +
Sbjct: 17  VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76

Query: 264 IPPLKVL---VYDKDTFTTDDFMGDAEIDIQ 291
               K L   V+DKD   ++D++G  ++ I 
Sbjct: 77  DLAKKTLEITVWDKDIGKSNDYIGGLQLGIN 107

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|176028 cd08382, C2_Smurf-like, C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 10/99 (10%)

Query: 208 IKVNVVKGTNLAVRDVMTS-DPYVILAL-GHQTVKTRVIKSNLNPVWNESLMLSI-PENI 264
           +++ V+    LA RD+    DP+ ++ + G QT  T V K  L+P WNE   L++ P +I
Sbjct: 2   VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGPSSI 61

Query: 265 PPLKVLVYDKDTF--TTDDFMGDAEI---DIQPLVTAAR 298
             + + V+D+  F      F+G   I    + PL     
Sbjct: 62  --ITIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGY 98

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have type-II topology. Length = 123

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 221 RDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT 279
           R V+TSDPYV + +   T+ +TRV+K++  P+W+E   +SI      L+  V D D F  
Sbjct: 72  RKVITSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGA 131

Query: 280 DDFMGDAEIDIQPLVTAAR 298
              +G A+I ++ + +  R
Sbjct: 132 -QIIGTAKIPVRDIASGER 149

Length = 868

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 20/109 (18%)

Query: 208 IKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLM--LSIP 261
           + V V++  +LA++   T DP+  + L +     T +T+V K   NP ++E+    L+I 
Sbjct: 1   LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 262 ENIP--------------PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTA 296
            +                 L+V ++     + DDF+G+  I +Q L  A
Sbjct: 61  FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQA 109

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 29/89 (32%), Positives = 50/89 (56%), Gaps = 10/89 (11%)

Query: 206 GLIKVNVVKGTNL-AVRDVMTSDPYV---ILALGHQTV--KTRVIKSNLNPVWNESLMLS 259
           G + V V +  NL A++   TSD +V   +L    +    KT V+K ++NPVWN + +  
Sbjct: 27  GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYD 86

Query: 260 --IPENIPP--LKVLVYDKDTFTTDDFMG 284
              PE++    L++ V+D D  +++DF+G
Sbjct: 87  GVSPEDLSQACLELTVWDHDKLSSNDFLG 115

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162

>gnl|CDD|176019 cd08373, C2A_Ferlin, C2 domain first repeat in Ferlin

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 3/77 (3%)

Query: 226 SDPYVILALGHQTVKTRVIKSNLNPVWNESL---MLSIPENIPPLKVLVYDKDTFTTDDF 282
            D    +       KTRV+++ LNPVWNE+    +   P+    L+++V D +    +  
Sbjct: 15  GDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRL 74

Query: 283 MGDAEIDIQPLVTAARA 299
           +G A + +Q LV+    
Sbjct: 75  IGSATVSLQDLVSEGLL 91

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 44.2 bits (105), Expect = 7e-06
 Identities = 22/83 (26%), Positives = 43/83 (51%), Gaps = 8/83 (9%)

Query: 210 VNVVKGTNLAVR--DVMTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENI 264
           V+++K  NL  R  DV   DP+V + L     ++++++V +   NP ++E+ +  +    
Sbjct: 18  VSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKE 77

Query: 265 PP---LKVLVYDKDTFTTDDFMG 284
                L++ VYD D F+    +G
Sbjct: 78  LQRRTLRLSVYDVDRFSRHCIIG 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17

 Score = 44.5 bits (105), Expect = 8e-06
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 11/89 (12%)

Query: 206 GLIKVNVVKGTNLAVRDVMT-SDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 259
           G + V++++   L   D+   SDP+V + L H     +T KT  ++  ++P +NES    
Sbjct: 14  GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK 73

Query: 260 IP----ENIPPLKVLVYDKDTFTTDDFMG 284
           +P    EN+  L   VY  +  +++DF+G
Sbjct: 74  VPQEELENV-SLVFTVYGHNVKSSNDFIG 101

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135

>gnl|CDD|175983 cd04016, C2_Tollip, C2 domain present in Toll-interacting protein (Tollip)

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 205 VGLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRV-IKSNLNPVWNESLMLSIPE 262
           VG + + VV+   L     +T  DPY  + +GH   +T        NP WN+++  ++PE
Sbjct: 1   VGRLSITVVQA-KLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE 59

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS 307
            +  + + ++D+  FT D+ +    I I   V      +   S+S
Sbjct: 60  GVDSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLS 104

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 121

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 35/116 (30%)

Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILA-------------------------LGHQTVK 240
           ++KV V++   L  +DV   SDPY +L                                K
Sbjct: 29  VLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAK 88

Query: 241 ----TRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 291
               T V    LNPVWNE+    + + +   L + ++D D    DDF+G   I ++
Sbjct: 89  SIKVTEVKPQTLNPVWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLK 140

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 225 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFT 278
           T+D YVI+ LG +   T V +   +PVW E     +P       N   L++ V  ++   
Sbjct: 19  TNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG 78

Query: 279 TDDFMGDAEIDI 290
            D F+G   I +
Sbjct: 79  LDKFLGQVSIPL 90

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175988 cd04021, C2_E3_ubiquitin_ligase, C2 domain present in E3 ubiquitin ligase

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 227 DPYV-ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVL---VYDKDTFTTDDF 282
           DPYV +   G    KT V K   NP WNE   +     + P   L   V+   T   D  
Sbjct: 23  DPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTV----LVTPQSTLEFKVWSHHTLKADVL 78

Query: 283 MGDAEIDIQPL 293
           +G+A +D+  +
Sbjct: 79  LGEASLDLSDI 89

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 125

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 227 DPYVILALGHQTVKTRVIKSNLNPVWNE--SLMLSIPENIPPLKVLVYDKDT 276
            PYV L +G  T K++V +   NPVW E  + ++  PEN   L++ V D  T
Sbjct: 22  SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPEN-QELEIEVKDDKT 72

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 19/200 (9%)

Query: 99  EAYTPGNLKKPS-PNSFIDERSDFIRRKYEKLEFFNFDEQ---ALLCPYPAPHRRSSSSS 154
           E Y+ G LK  + P+  +        RK   ++   FD Q    +          S+   
Sbjct: 611 EVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEG------STLPD 664

Query: 155 TSSSSHDKKH-YEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVV 213
               + D    +  +  + RI I   N W        N+  ++S       +G I+V+V 
Sbjct: 665 LIDRTLDTFLVFPLRNPKGRIFIT--NYW----KPIYNAGGSSSKTVYDTPIGAIRVSVR 718

Query: 214 KGTNLAVRD-VMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLV 271
           K  +L        SDPY  + + +    +T    S LNP+WNE L + +      L +  
Sbjct: 719 KANDLRNEIPGGKSDPYATVLVNNLVKYRTIYGSSTLNPIWNEILYVPVTSKNQRLTLEC 778

Query: 272 YDKDTFTTDDFMGDAEIDIQ 291
            D +    D  +G+  I++ 
Sbjct: 779 MDYEESGDDRNLGEVNINVS 798

Length = 1227

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 40.7 bits (96), Expect = 1e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 11/90 (12%)

Query: 209 KVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVK--TRVIKSNLNPVWNESLM-LSI- 260
              +++   L   D    SDPYV L L     +  K  T+ +    NP +NE+L    I 
Sbjct: 18  HCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGIT 77

Query: 261 PENI--PPLKVLVYDKDTFTTDDFMGDAEI 288
            E+I    L++LV D+D F  +DF+G+  I
Sbjct: 78  EEDIQRKTLRLLVLDEDRF-GNDFLGETRI 106

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 15/73 (20%)

Query: 225 TSDPYVILALGH-------QTVKTRVIKSN-LNPVWNESLMLSIPENIPPL---KVLVYD 273
             DPYV + + H          KT+V+K+N  NPVWNE+    +   +P L   + +VYD
Sbjct: 24  IVDPYVEVEI-HGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV--TVPELAFLRFVVYD 80

Query: 274 KDTFTTDDFMGDA 286
           +D+   DDF+G A
Sbjct: 81  EDSG-DDDFLGQA 92

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176072 cd08690, C2_Freud-1, C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query: 236 HQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVLVYDKDTF-TTDDFMGD 285
            Q+ KT  IK   +P +NES  L+I               LK  VY K  F  +D  +G 
Sbjct: 40  PQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLRSDKLLGT 99

Query: 286 AEIDIQPLVTAARACE 301
           A++ ++PL T    CE
Sbjct: 100 AQVKLEPLET---KCE 112

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 155

>gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 8/63 (12%)

Query: 210 VNVVKGTNL---AVRDVMTSDPYVILALGHQTVK-----TRVIKSNLNPVWNESLMLSIP 261
           V V+K  NL    ++ ++  D  V + L HQ  K     T+  K  +NPVWNE +M  +P
Sbjct: 19  VVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELP 78

Query: 262 ENI 264
             +
Sbjct: 79  SEL 81

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138

>gnl|CDD|176029 cd08383, C2A_RasGAP, C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 209 KVNVVKGTNLAVRDVMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPP- 266
           ++ +++  NL  +   T DPY  ++L    V +T+ ++  LNP W E  +   P   PP 
Sbjct: 3   RLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDP---PPD 56

Query: 267 -----LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
                L     DK +   D  +G   +    L
Sbjct: 57  VTFFTLSFYNKDKRSKDRDIVIGKVALSKLDL 88

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 117

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 12/56 (21%)

Query: 209 KVNVVKGTNLAVRDVMTSDP------YVILALGHQTVKTRVIKS-NLNPVWNESLM 257
           +V V     +  +D++ SD       +V   LG+Q ++TR  ++ N NP WNE LM
Sbjct: 3   RVTV-----IEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELM 53

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|176060 cd08678, C2_C21orf25-like, C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)

Query: 207 LIKVNVVKGTNLAVRDVMTSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENI 264
           L+K     G + A     +S+PY +L +    Q  ++   K+  NP W+E  +  +  N 
Sbjct: 2   LVKNIKANGLSEAAG---SSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNS 58

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEI 288
             L   VYD    +   F+G A +
Sbjct: 59  KELLFEVYDNGKKSDSKFLGLAIV 82

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 205 VGLIKVNVVKGTNLAVRDV--MTSDPYVILAL----GHQTVKTRVIKSN-LNPVWNESLM 257
              + V+V +  NLA  D     S+PYV   L      Q+ +   IK N  NPV+NE+L 
Sbjct: 14  TQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLK 73

Query: 258 LSIPEN---IPPLKVLVYDKDTFTTDDFMGDAEI 288
            SI  +      L++ V+  D F  + F+G+ EI
Sbjct: 74  YSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEI 107

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 39.3 bits (92), Expect = 5e-04
 Identities = 15/49 (30%), Positives = 26/49 (53%)

Query: 225 TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYD 273
           ++D Y +   G + V+TR ++ + NP WNE     + +    L V V+D
Sbjct: 23  STDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFD 71

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|215520 PLN02964, PLN02964, phosphatidylserine decarboxylase

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 32/144 (22%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 153 SSTSSSSHDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNV 212
           +S  +    +    ++  + RI         R  S    S++A   V+  +F G+  + +
Sbjct: 5   NSREAKESRRSKLRQKLQKFRIRRR-HLRCSRGSSSGSVSQRA---VSAEDFSGIALLTL 60

Query: 213 VKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPL-KVLV 271
           V G  +  +D         ++ G QT +T    S   PVWN    L + +N P L ++ V
Sbjct: 61  V-GAEMKFKDKW----LACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISV 115

Query: 272 YDKDTFTTDDFMGDAEIDIQPLVT 295
           ++ +  + +  +G  E+D+   VT
Sbjct: 116 FETNRLSKNTLVGYCELDLFDFVT 139

Length = 644

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 226 SDPYV---ILALGHQTV--KTRVIKSNLNPVWNESLMLSIPENIPPLKVL---VYDKDTF 277
            DPYV   +L    ++   KT V K NLNPV++E+    +       + L   V +  +F
Sbjct: 37  PDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSF 96

Query: 278 --TTDDFMGDAEIDIQPLVTAAR 298
                  +G   ID+  L  +  
Sbjct: 97  LSREKKLLGQVLIDLSDLDLSKG 119

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 21/108 (19%)

Query: 204 FVGLIKVNVV-----KGTNLAVRDVMTS------DPYVIL-----ALGHQTVKTRVIKSN 247
           F G +K+ +      K T+ + R  +        DPYV +      +G  + K +     
Sbjct: 2   FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK----T 57

Query: 248 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295
            +PVWNE     +  N   L++ V+       DDF+ +  I  + L+ 
Sbjct: 58  NSPVWNEEFTTEV-HNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQ 104

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 3/84 (3%)

Query: 208 IKVNVVKGTNLAVRD--VMTSDPYVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENI 264
           +K+ + +  NL  R       D Y  + L  + V +T+ ++ +L P + E     IP   
Sbjct: 2   LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTF 61

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEI 288
             L   +YD+D    D  +G   I
Sbjct: 62  RHLSFYIYDRDVLRRDSVIGKVAI 85

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG0703	287	consensus Predicted GTPase-activating protein [Sig	100.0
PF01412	116	ArfGap: Putative GTPase activating protein for Arf	100.0
smart00105	112	ArfGap Putative GTP-ase activating proteins for th	100.0
COG5347	319	GTPase-activating protein that regulates ARFs (ADP	100.0
PLN03119	648	putative ADP-ribosylation factor GTPase-activating	100.0
PLN03131	705	hypothetical protein; Provisional	100.0
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.97
PLN03114	395	ADP-ribosylation factor GTPase-activating protein	99.97
KOG0704	386	consensus ADP-ribosylation factor GTPase activator	99.97
KOG0706	454	consensus Predicted GTPase-activating protein [Sig	99.97
KOG0521	785	consensus Putative GTPase activating proteins (GAP	99.93
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.88
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.86
KOG1117	1186	consensus Rho- and Arf-GTPase activating protein A	99.86
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.77
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.75
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.75
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.74
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.74
KOG0702	524	consensus Predicted GTPase-activating protein [Sig	99.74
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.72
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.71
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.71
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.7
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.69
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.69
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.68
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.68
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.67
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.67
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.67
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.66
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.66
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.66
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.66
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.65
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.65
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.65
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.64
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.64
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.64
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.64
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.64
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.64
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.64
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.64
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.64
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.63
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.63
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.63
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.63
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.63
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.62
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.62
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.62
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.62
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.61
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.61
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.6
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.6
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.6
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.6
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.6
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.6
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.59
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.59
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.59
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.58
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.58
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.58
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.57
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.57
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.57
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.57
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.57
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.57
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.57
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.56
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.56
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.56
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.55
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.55
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.55
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.53
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.53
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.52
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.52
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.51
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.51
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.51
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.51
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.51
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.51
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.51
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.5
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.5
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.49
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.48
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.48
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.46
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.45
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.44
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.4
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.4
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.35
PLN03008	868	Phospholipase D delta	99.35
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.35
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.33
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.33
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.3
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.26
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.2
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.16
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.12
PLN02223	537	phosphoinositide phospholipase C	99.06
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.05
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.95
PLN02952	599	phosphoinositide phospholipase C	98.91
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	98.9
PLN02230	598	phosphoinositide phospholipase C 4	98.89
PLN02222	581	phosphoinositide phospholipase C 2	98.86
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.85
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.83
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.82
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.78
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.78
PLN02228	567	Phosphoinositide phospholipase C	98.76
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
PLN02270	808	phospholipase D alpha	98.66
PLN02964	644	phosphatidylserine decarboxylase	98.19
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.13
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	97.97
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.78
PLN02352	758	phospholipase D epsilon	97.69
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	97.65
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	97.62
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.45
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.39
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.37
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.31
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.13
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.94
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	96.92
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.05
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.93
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	94.75
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.7
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	94.65
KOG0521	785	consensus Putative GTPase activating proteins (GAP	94.39
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	94.04
PF15627	156	CEP76-C2: CEP76 C2 domain	93.87
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	93.31
KOG1327	529	consensus Copine [Signal transduction mechanisms]	92.19
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	91.21
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	90.94
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	90.85
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	89.64
KOG1452	442	consensus Predicted Rho GTPase-activating protein	88.16
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	87.6
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	87.42
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	85.53
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	85.45
PRK12495	226	hypothetical protein; Provisional	85.34
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	84.95
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	83.38
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	82.31
PRK00085	247	recO DNA repair protein RecO; Reviewed	81.97
PF11781	36	RRN7: RNA polymerase I-specific transcription init	80.44

>KOG0703 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=100.00  E-value=9.1e-46  Score=325.11  Aligned_cols=121  Identities=51%  Similarity=0.964  Sum_probs=115.5

Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcc
Q 021294           11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGG   90 (314)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gG   90 (314)
                      ...++.+++|++||+.|+|+.|||||+++|+|||.|+|||||++|+||||+||+|||+||||+||.|++|||+.|+.+ |
T Consensus         7 ~~~~~~~~~l~~Ll~~~~N~~CADC~a~~P~WaSwnlGvFiC~~C~giHR~lg~hiSkVkSv~LD~W~~eqv~~m~~~-G   85 (287)
T KOG0703|consen    7 GSNERNKRRLRELLREPDNKVCADCGAKGPRWASWNLGVFICLRCAGIHRSLGVHISKVKSVTLDEWTDEQVDFMISM-G   85 (287)
T ss_pred             cccchHHHHHHHHHcCcccCcccccCCCCCCeEEeecCeEEEeecccccccccchhheeeeeeccccCHHHHHHHHHH-c
Confidence            556778999999999999999999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             hhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccc
Q 021294           91 NIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD  135 (314)
Q Consensus        91 N~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~  135 (314)
                      |.+||++||+++|..+.+|.+++   .+++|||+|||.++|+.++
T Consensus        86 N~~an~~~ea~~p~~~~~p~~d~---~~e~FIR~KYE~kkf~~~~  127 (287)
T KOG0703|consen   86 NAKANSYYEAKLPDPFRRPGPDD---LVEQFIRDKYERKKFLDPE  127 (287)
T ss_pred             chhhhhhccccCCccccCCChHH---HHHHHHHHHHhhhhhccch
Confidence            99999999999999999998876   8899999999999999865

>PF01412 ArfGap: Putative GTPase activating protein for Arf; InterPro: IPR001164 This entry describes a family of small GTPase activating proteins, for example ARF1-directed GTPase-activating protein, the cycle control GTPase activating protein (GAP) GCS1 which is important for the regulation of the ADP ribosylation factor ARF, a member of the Ras superfamily of GTP-binding proteins []

Probab=100.00  E-value=3.1e-42  Score=271.94  Aligned_cols=114  Identities=49%  Similarity=0.979  Sum_probs=96.5

Q ss_pred             HHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHH
Q 021294           18 ARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKK   97 (314)
Q Consensus        18 ~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~   97 (314)
                      ++|++|++.|+|+.|||||+++|+|||++||||||+.|||+||+||+|||+||||+||+|+++||+.|+. |||..+|++
T Consensus         2 ~~l~~l~~~~~N~~CaDCg~~~p~w~s~~~GiflC~~Cag~HR~lg~~is~VkSi~~d~w~~~ev~~~~~-~GN~~~n~~   80 (116)
T PF01412_consen    2 KILRELLKKPGNKVCADCGAPNPTWASLNYGIFLCLECAGIHRSLGVHISRVKSITMDNWSPEEVQRMRE-GGNKRANSI   80 (116)
T ss_dssp             HHHHHHHCSTTCTB-TTT-SBS--EEETTTTEEE-HHHHHHHHHHTTTT--EEETTTS---HHHHHHHHH-SHHHHHHHH
T ss_pred             HHHHHHHcCcCcCcCCCCCCCCCCEEEeecChhhhHHHHHHHHHhcccchhccccccCCCCHHHHHHHHH-HChHHHHHH
Confidence            6899999999999999999999999999999999999999999999999999999999999999999966 599999999


Q ss_pred             HhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeec
Q 021294           98 YEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        98 ~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      ||++. +...+|.++++.+.+++||++||++++|+.
T Consensus        81 ~e~~~-~~~~~~~~~~~~~~~~~fI~~KY~~k~f~~  115 (116)
T PF01412_consen   81 WEANS-PPPKKPPPSSDQEKREQFIRAKYVEKAFIS  115 (116)
T ss_dssp             HTTTS-TTTTTHCTTSHHHHHHHHHHHHHTTHTTS-
T ss_pred             HHcCC-CCCCCCCCCCcHHHHHHHHHHHHHhhhhcc
Confidence            99994 344678888889999999999999999985

The GTP-bound form of ARF is essential for the maintenance of normal Golgi morphology, it participates in recruitment of coat proteins which are required for budding and fission of membranes. Before the fusion with an acceptor compartment the membrane must be uncoated. This step required the hydrolysis of GTP associated to ARF. These proteins contain a characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) which displays some similarity to the C4-type GATA zinc finger. The ARFGAP domain display no obvious similarity to other GAP proteins. The 3D structure of the ARFGAP domain of the PYK2-associated protein beta has been solved []. It consists of a three-stranded beta-sheet surrounded by 5 alpha helices. The domain is organised around a central zinc atom which is coordinated by 4 cysteines. The ARFGAP domain is clearly unrelated to the other GAP proteins structures which are exclusively helical. Classical GAP proteins accelerate GTPase activity by supplying an arginine finger to the active site. The crystal structure of ARFGAP bound to ARF revealed that the ARFGAP domain does not supply an arginine to the active site which suggests a more indirect role of the ARFGAP domain in the GTPase hydrolysis []. The Rev protein of human immunodeficiency virus type 1 (HIV-1) facilitates nuclear export of unspliced and partly-spliced viral RNAs []. Rev contains an RNA-binding domain and an effector domain; the latter is believed to interact with a cellular cofactor required for the Rev response and hence HIV-1 replication. Human Rev interacting protein (hRIP) specifically interacts with the Rev effector. The amino acid sequence of hRIP is characterised by an N-terminal, C-4 class zinc finger motif.; GO: 0008060 ARF GTPase activator activity, 0008270 zinc ion binding, 0032312 regulation of ARF GTPase activity; PDB: 2P57_A 2CRR_A 2OWA_B 3O47_B 3DWD_A 1DCQ_A 2CRW_A 3MDB_D 3FEH_A 3LJU_X ....

>smart00105 ArfGap Putative GTP-ase activating proteins for the small GTPase, ARF

Probab=100.00  E-value=8.7e-41  Score=261.89  Aligned_cols=107  Identities=48%  Similarity=0.860  Sum_probs=99.5

Q ss_pred             CCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhCCCCC
Q 021294           27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNL  106 (314)
Q Consensus        27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~~~~~  106 (314)
                      |+|+.|||||+++|+|||++||||||+.|+|+||.||+|||+||||+||+|++++|++|+ .|||.++|++||++++...
T Consensus         1 ~~N~~CaDC~~~~p~w~s~~~GifvC~~CsgiHR~lg~his~VkSl~md~w~~~~i~~~~-~~GN~~~n~~~e~~~~~~~   79 (112)
T smart00105        1 PGNKKCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLDTWTEEELRLLQ-KGGNENANSIWESNLDDFS   79 (112)
T ss_pred             CCCCcccCCCCCCCCcEEeccceeEhHHhHHHHHhcCCCcCeeeecccCCCCHHHHHHHH-HhhhHHHHHHHHhhCCccc
Confidence            689999999999999999999999999999999999999999999999999999999996 5799999999999998775


Q ss_pred             CCCCCCCCHHHHHHHHhcccccceeecc
Q 021294          107 KKPSPNSFIDERSDFIRRKYEKLEFFNF  134 (314)
Q Consensus       107 ~kp~~~~~~~~r~~fI~~KY~~~~f~~~  134 (314)
                      .+|.+.+..+.|++||++||++++|+..
T Consensus        80 ~~~~~~~~~~~~~~fI~~KY~~k~f~~~  107 (112)
T smart00105       80 LKPPDSDDQQKYESFIAAKYEEKLFVPP  107 (112)
T ss_pred             cCCCCCchHHHHHHHHHHHHHhhhcccc
Confidence            5665566788999999999999999964

Putative zinc fingers with GTPase activating proteins (GAPs) towards the small GTPase, Arf. The GAP of ARD1 stimulates GTPase hydrolysis for ARD1 but not ARFs.

>COG5347 GTPase-activating protein that regulates ARFs (ADP-ribosylation factors), involved in ARF-mediated vesicular transport [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.3e-36  Score=275.25  Aligned_cols=119  Identities=42%  Similarity=0.772  Sum_probs=107.8

Q ss_pred             cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294           15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV   94 (314)
Q Consensus        15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~   94 (314)
                      ..++++..|...++|+.|||||++.|+|+|+|||||||++||||||+||+|||+||||+||+|+.+||+.|.. |||.+|
T Consensus         6 ~~~~~l~~l~~~~~Nk~CaDCga~~P~W~S~nlGvfiCi~CagvHRsLGvhiS~VKSitLD~wt~~~l~~m~~-gGN~~a   84 (319)
T COG5347           6 EDRKLLKLLKSDSSNKKCADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLDNWTEEELRRMEV-GGNSNA   84 (319)
T ss_pred             HHHHHHHHHhhccccCccccCCCCCCceEecccCeEEEeecchhhhccccceeeeeeeecccCCHHHHHHHHH-hcchhh
Confidence            3577888888999999999999999999999999999999999999999999999999999999999999965 899999


Q ss_pred             HHHHhhhCCCCC-CCCCCCCCHHHHHHHHhcccccceeecc
Q 021294           95 NKKYEAYTPGNL-KKPSPNSFIDERSDFIRRKYEKLEFFNF  134 (314)
Q Consensus        95 n~~~e~~~~~~~-~kp~~~~~~~~r~~fI~~KY~~~~f~~~  134 (314)
                      |.+||.++-... .+.....+...+++||+.||+.++|...
T Consensus        85 ~~~~e~~~~~~~~~~~k~~yd~~v~~~y~~~ky~~~~~~~~  125 (319)
T COG5347          85 NRFYEKNLLDQLLLPIKAKYDSSVAKKYIRKKYELKKFIDD  125 (319)
T ss_pred             hhHhccCCCcccccccccccCHHHHHHHHHHHHHhhhcccc
Confidence            999999876532 3555667778899999999999999974

>PLN03119 putative ADP-ribosylation factor GTPase-activating protein AGD14; Provisional

Probab=100.00  E-value=3.2e-36  Score=282.13  Aligned_cols=124  Identities=27%  Similarity=0.543  Sum_probs=110.4

Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhc
Q 021294           10 PKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMG   89 (314)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~g   89 (314)
                      .++.++.+++|++|++.|+|+.|||||+.+|+|||+|||||||+.|+||||.|| |  |||||+||+|+++||++|+. |
T Consensus         4 KR~qERnekILreLlklPgNk~CADCgs~~P~WASiNlGIFICi~CSGIHRsLG-h--RVKSLSLDkWT~EEVe~Mk~-g   79 (648)
T PLN03119          4 KREEERNEKIIRGLMKLPPNRRCINCNSLGPQYVCTTFWTFVCMACSGIHREFT-H--RVKSVSMSKFTSKEVEVLQN-G   79 (648)
T ss_pred             hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCceeeccceEEeccchhhhccCC-c--eeeccccCCCCHHHHHHHHH-h
Confidence            467788999999999999999999999999999999999999999999999998 3  99999999999999999965 6


Q ss_pred             chhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294           90 GNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ  137 (314)
Q Consensus        90 GN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~  137 (314)
                      ||.+||++||++|+....++.+..+.+.+++|||+||++|+|+.....
T Consensus        80 GN~~AN~iyeanw~~~~~~~P~~sD~e~lr~FIR~KYVeKRF~~~~~~  127 (648)
T PLN03119         80 GNQRAREIYLKNWDHQRQRLPENSNAERVREFIKNVYVQKKYAGANDA  127 (648)
T ss_pred             chHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhccCcCCC
Confidence            999999999999987644444455567778999999999999975433

>PLN03131 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-36  Score=283.94  Aligned_cols=122  Identities=30%  Similarity=0.539  Sum_probs=109.2

Q ss_pred             CCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhc
Q 021294           10 PKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMG   89 (314)
Q Consensus        10 ~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~g   89 (314)
                      .+++++.+++|++|++.|+|+.|||||+++|+|||+|||||||+.|+||||.|| |  |||||+||+|+++||+.|+ .|
T Consensus         4 kkqqErnekiLreLlk~PgNk~CADCga~~P~WASiNlGIFICi~CSGIHRsLg-h--RVKSVTLD~WtdeEV~~Mk-~g   79 (705)
T PLN03131          4 RKEEERNEKIIRGLMKLPPNRRCINCNSLGPQFVCTNFWTFICMTCSGIHREFT-H--RVKSVSMSKFTSQDVEALQ-NG   79 (705)
T ss_pred             hHHHHHHHHHHHHHhhCcCCCccccCCCCCCCeeEeccceEEchhchhhhcccC-c--ccccccCCCCCHHHHHHHH-Hh
Confidence            467788899999999999999999999999999999999999999999999997 3  9999999999999999996 57


Q ss_pred             chhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccc
Q 021294           90 GNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFD  135 (314)
Q Consensus        90 GN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~  135 (314)
                      ||.+||++||++|+....++.+++..+.+++|||+||++|+|+...
T Consensus        80 GN~~AN~iyeanwd~~r~~lP~~sd~ekrr~FIR~KYVeKRFa~~~  125 (705)
T PLN03131         80 GNQRAREIYLKDWDQQRQRLPDNSKVDKIREFIKDIYVDKKYAGGK  125 (705)
T ss_pred             ccHHHHHHHHhhcccccCCCCCCccHHHHHHHHHHHHhhhhhhcCC
Confidence            9999999999999865334444556677899999999999999743

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.97  E-value=7.2e-32  Score=252.30  Aligned_cols=115  Identities=43%  Similarity=0.872  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHH
Q 021294           17 RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNK   96 (314)
Q Consensus        17 ~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~   96 (314)
                      .-.|+.|...+||..|+||++++|.|||+|+|+++|++|+||||.||+|+|||+||.||.|..|-+..|..+ ||+.||+
T Consensus       501 a~a~qairn~rgn~~c~dc~~~n~~wAslnlg~l~cieCsgihr~lgt~lSrvr~LeLDdWPvEl~~Vm~ai-GN~~AN~  579 (749)
T KOG0705|consen  501 AMALQAIRNMRGNSHCVDCGTPNPKWASLNLGVLMCIECSGIHRNLGTHLSRVRSLELDDWPVELLKVMSAI-GNDLANS  579 (749)
T ss_pred             HHHHHHHhcCcCCceeeecCCCCcccccccCCeEEEEEchhhhhhhhhhhhhhhccccccCcHHHHHHHHHh-hhhHHHH
Confidence            345778889999999999999999999999999999999999999999999999999999999999999888 8999999


Q ss_pred             HHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeec
Q 021294           97 KYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        97 ~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      +||..+ .+..||.|+++.++++.||++||++|.|..
T Consensus       580 vWE~~~-~G~~KPs~~s~REEkErwIr~KYeqklFLa  615 (749)
T KOG0705|consen  580 VWEGSS-QGQTKPSPDSSREEKERWIRAKYEQKLFLA  615 (749)
T ss_pred             Hhhhhc-cCCcCCCccccHHHHHHHHHHHHHHHhhcC
Confidence            999955 556899999999999999999999999996

>PLN03114 ADP-ribosylation factor GTPase-activating protein AGD10; Provisional

Probab=99.97  E-value=4.9e-31  Score=235.75  Aligned_cols=118  Identities=32%  Similarity=0.548  Sum_probs=100.6

Q ss_pred             cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294           15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV   94 (314)
Q Consensus        15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~   94 (314)
                      ...++|++|+..|+|+.|+|||+++|+|+|+|||||||+.|+|+||.||+|||+|+|++||.|++++|+.| +.|||.++
T Consensus         8 d~~~vfrkL~~kPgNk~CaDCga~nPtWASvn~GIFLCl~CSGVHRsLGvHISfVRSltLD~Ws~eqL~~M-k~GGN~rA   86 (395)
T PLN03114          8 DKISVFKKLKAKSDNKICFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWSSEQLKMM-IYGGNNRA   86 (395)
T ss_pred             cHHHHHHHHHhCcCCCcCccCCCCCCCceeeccceeehhhhhHhhccCCCCCceeecccCCCCCHHHHHHH-HHhcCHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999 56899999


Q ss_pred             HHHHhhhCCCCCCCCCC--CCCHHHHHHHHhcccccceeec
Q 021294           95 NKKYEAYTPGNLKKPSP--NSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        95 n~~~e~~~~~~~~kp~~--~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      |.+|+.+.-.....+..  ++....++.-+.+|++.+.+..
T Consensus        87 ~~fF~qhG~~~~~~~~~KY~S~aA~~Yre~L~keVa~~~a~  127 (395)
T PLN03114         87 QVFFKQYGWSDGGKTEAKYTSRAADLYKQILAKEVAKSKAE  127 (395)
T ss_pred             HHHHHHcCCCCCCCcccccCCHHHHHHHHHHHHHHHHhhhc
Confidence            99998764322112212  3445566777999999998874

>KOG0704 consensus ADP-ribosylation factor GTPase activator [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.97  E-value=4.1e-31  Score=234.56  Aligned_cols=86  Identities=44%  Similarity=0.860  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHH
Q 021294           15 GPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAV   94 (314)
Q Consensus        15 ~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~   94 (314)
                      ++++.|++|....+|+.|+||++++|+|||++||||||++|||+||.||+|||+|||||||+|.+.||+.| +.|||.++
T Consensus         5 rtrr~L~~lkp~deNk~CfeC~a~NPQWvSvsyGIfICLECSG~HRgLGVhiSFVRSVTMD~wkeiel~kM-eaGGN~~~   83 (386)
T KOG0704|consen    5 RTRRVLLELKPQDENKKCFECGAPNPQWVSVSYGIFICLECSGKHRGLGVHISFVRSVTMDKWKEIELKKM-EAGGNERF   83 (386)
T ss_pred             HHHHHHHhcCccccCCceeecCCCCCCeEeecccEEEEEecCCcccccceeeEEEEeeecccccHHHHHHH-HhccchhH
Confidence            46778888877789999999999999999999999999999999999999999999999999999999999 56999999


Q ss_pred             HHHHhhh
Q 021294           95 NKKYEAY  101 (314)
Q Consensus        95 n~~~e~~  101 (314)
                      +.+++..
T Consensus        84 ~eFL~s~   90 (386)
T KOG0704|consen   84 REFLSSQ   90 (386)
T ss_pred             HHHHhhC
Confidence            9999865

>KOG0706 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.97  E-value=7.9e-31  Score=240.16  Aligned_cols=89  Identities=38%  Similarity=0.776  Sum_probs=84.0

Q ss_pred             CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhH
Q 021294           14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA   93 (314)
Q Consensus        14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~   93 (314)
                      ...+..++.|+.++.|+.|||||+++|+|+|++||||||++||++||+||+||++|||.+||.|+.+|++.| .+|||.+
T Consensus         8 ~d~~~vfkkLRs~~~NKvCFDCgAknPtWaSVTYGIFLCiDCSAvHRnLGVHiSFVRSTnLDsWs~~qLR~M-~~GGN~n   86 (454)
T KOG0706|consen    8 QDIQTVFKKLRSQSENKVCFDCGAKNPTWASVTYGIFLCIDCSAVHRNLGVHISFVRSTNLDSWSWEQLRRM-QVGGNAN   86 (454)
T ss_pred             hhHHHHHHHHhcCCCCceecccCCCCCCceeecceEEEEEecchhhhccccceEEEeecccccCCHHHHhHh-hhcCchh
Confidence            346888999999999999999999999999999999999999999999999999999999999999999999 6899999


Q ss_pred             HHHHHhhhCC
Q 021294           94 VNKKYEAYTP  103 (314)
Q Consensus        94 ~n~~~e~~~~  103 (314)
                      |+.++..+--
T Consensus        87 A~~FFkqhg~   96 (454)
T KOG0706|consen   87 ARVFFKQHGC   96 (454)
T ss_pred             HHHHHHHcCC
Confidence            9999988743

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=99.93  E-value=2.7e-27  Score=237.70  Aligned_cols=118  Identities=44%  Similarity=0.816  Sum_probs=109.8

Q ss_pred             HHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHH
Q 021294           19 RLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKY   98 (314)
Q Consensus        19 ~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~   98 (314)
                      .+..+...|||..|||||+++|+|+|+|+||.+||+|+|+||+||+|||+|+|++||.|.++.+.+|..+ ||..+|.+|
T Consensus       416 ~~~~vq~~pgN~~c~Dcg~p~ptw~S~NLgv~~CIecSGvhRslGvh~SkvrsLtLD~~~~~l~~l~~~l-gn~~~N~i~  494 (785)
T KOG0521|consen  416 VIEEVQSVPGNAQCCDCGAPEPTWASINLGVLLCIECSGVHRSLGVHISKVRSLTLDVWEPELLLLFKNL-GNKYVNEIY  494 (785)
T ss_pred             hhhhhhcCCchhhhhhcCCCCCchHhhhhchhhHhhccccccccCchhhhhhhhhhhccCcHHHHHHHHh-Ccchhhhhh
Confidence            4677889999999999999999999999999999999999999999999999999999999999999776 899999999


Q ss_pred             hhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294           99 EAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ  137 (314)
Q Consensus        99 e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~  137 (314)
                      |+.+++. ..+|.+..++..|+.||++||++++|....++
T Consensus       495 e~~l~~~~~~~~~~~~~~~~r~~~i~~kyve~~F~~k~~~  534 (785)
T KOG0521|consen  495 EALLPSYDSSKPTASSSRQAREAWIKAKYVERRFSVKEPQ  534 (785)
T ss_pred             hcccccccccCCCCccchhhhhHhhhcccceeeEeecccc
Confidence            9999854 67999988899999999999999999975444

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.88  E-value=5.1e-24  Score=196.83  Aligned_cols=108  Identities=33%  Similarity=0.719  Sum_probs=97.8

Q ss_pred             cCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhCCC
Q 021294           25 RQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPG  104 (314)
Q Consensus        25 ~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~~~  104 (314)
                      +...-+.|+|||+++|.|||++-|+|+|.+|..+||+||.|||.||+|.-..|.++.|+++..+ .|..+|.|||..+-+
T Consensus         4 ~~l~~evC~DC~~~dp~WASvnrGt~lC~eCcsvHrsLGrhIS~vrhLR~s~W~pt~l~~V~tL-n~~gaNsIWEh~Lld   82 (669)
T KOG0818|consen    4 RLLSSEVCADCSGPDPSWASVNRGTFLCDECCSVHRSLGRHISQVRHLRHTPWPPTLLQMVETL-NNNGANSIWEHSLLD   82 (669)
T ss_pred             cchhhhhhcccCCCCCcceeecCceEehHhhhHHHhhhcchHHHHHHhccCCCCHHHHHHHHHH-HhcCcchhhhhhccC
Confidence            3456789999999999999999999999999999999999999999999999999999887666 788899999998754


Q ss_pred             ------CCCCCCCCCCHH-HHHHHHhcccccceeec
Q 021294          105 ------NLKKPSPNSFID-ERSDFIRRKYEKLEFFN  133 (314)
Q Consensus       105 ------~~~kp~~~~~~~-~r~~fI~~KY~~~~f~~  133 (314)
                            +++||+|.+... .+.+||++||+...|+.
T Consensus        83 ~st~~sg~rk~~pqD~~Hp~K~eFIkaKy~~LtFv~  118 (669)
T KOG0818|consen   83 PATIMSGRRKANPQDKVHPNKAEFIRAKYQMLAFVH  118 (669)
T ss_pred             chhhhcccCCCCCcCCCCccHHHHHHHHHHheeeec
Confidence                  467899987766 88999999999999995

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.86  E-value=1.1e-21  Score=160.08  Aligned_cols=100  Identities=53%  Similarity=0.898  Sum_probs=94.7

Q ss_pred             eeeeeEEEEEEEeeecCCCCCC-CCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~-~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d  280 (314)
                      .++.|.|.|.|.+|.+|..+|+ +.+||||++.+++|+.+|+++.+++||+|||.|.|.+.+...+|+++|||+|.++.|
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence            5788999999999999999999 599999999999999999999999999999999999999899999999999999999


Q ss_pred             ceeEEEEEeCccccccccccC
Q 021294          281 DFMGDAEIDIQPLVTAARACE  301 (314)
Q Consensus       281 d~iG~~~v~l~~l~~~~~~~~  301 (314)
                      |+||++.++|.+++.+.....
T Consensus        82 D~mG~A~I~l~p~~~~~~~~~  102 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQKMDY  102 (168)
T ss_pred             cccceeeeccHHHHHHhhhhc
Confidence            999999999999998766553

>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=1.1e-22  Score=197.86  Aligned_cols=120  Identities=37%  Similarity=0.633  Sum_probs=112.2

Q ss_pred             HHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC--CCHHHHHHHHHhcchhH
Q 021294           16 PRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE--WTNEQVDALAEMGGNIA   93 (314)
Q Consensus        16 ~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~--w~~~~v~~~~~~gGN~~   93 (314)
                      ..+...+++....|+.|+|||++.|.|||+|+++.||-.|+|-||+||.-+|+|+|++||.  |+.+-|+++..+ ||.+
T Consensus       285 d~evaeriW~ne~nr~cadC~ssrPdwasiNL~vvIck~caGqhrslgs~dSkvrslkmd~svwsneliElfivl-gn~~  363 (1186)
T KOG1117|consen  285 DYEVAERIWLNEENRECADCGSSRPDWASINLCVVICKPCAGQHRSLGSGDSKVRSLKMDPSVWSNELIELFIVL-GNPR  363 (1186)
T ss_pred             hHHHHHHHHhccccccccccCCCCCcccccccceEEcccCCCccccCCCccccccccccCcccccchhhhhheee-cCcc
Confidence            3556678899999999999999999999999999999999999999999999999999995  999999999877 8999


Q ss_pred             HHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294           94 VNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ  137 (314)
Q Consensus        94 ~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~  137 (314)
                      +|.+|.+++|++ ..-+|+++...|++||.+||.+.+|.++.+.
T Consensus       364 an~Fwa~nl~~~-e~lh~dssp~~r~~fi~~Kykeg~fRk~~~~  406 (1186)
T KOG1117|consen  364 ANRFWAGNLPPN-EHLHPDSSPSTRRQFIKEKYKEGKFRKEHPV  406 (1186)
T ss_pred             cccccccCCCCc-cccCCCCCcchhhhHHHHHhhcccccccccc
Confidence            999999999987 6789999999999999999999999987776

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.77  E-value=9.2e-18  Score=133.35  Aligned_cols=100  Identities=21%  Similarity=0.403  Sum_probs=86.0

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      |.|.|+|++|++++..+++.+||||++.++.++.+|+++.+ +.||+|||+|.|.+......|.|+|||++.+++|++||
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~iG   81 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERIA   81 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceEE
Confidence            78999999999988777559999999999999999999876 79999999999999765678999999999999999999


Q ss_pred             EEEEeCc-cccccccccCcccc
Q 021294          285 DAEIDIQ-PLVTAARACETPIS  305 (314)
Q Consensus       285 ~~~v~l~-~l~~~~~~~~~~~~  305 (314)
                      .+.++|. .+..+.....|..+
T Consensus        82 ~~~i~l~~~~~~g~~~~~W~~L  103 (121)
T cd04016          82 WTHITIPESVFNGETLDDWYSL  103 (121)
T ss_pred             EEEEECchhccCCCCccccEeC
Confidence            9999996 46555444444433

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.75  E-value=8.9e-18  Score=137.71  Aligned_cols=96  Identities=67%  Similarity=1.069  Sum_probs=88.6

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      .|.|.|+|++|++|+..+...+||||++.++++..+|+++++++||.|||.|.|.+......|.|+|||++.++.|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            37899999999999988877899999999999999999999999999999999999877788999999999999999999


Q ss_pred             EEEEeCcccccccccc
Q 021294          285 DAEIDIQPLVTAARAC  300 (314)
Q Consensus       285 ~~~v~l~~l~~~~~~~  300 (314)
                      ++.++|.++.......
T Consensus        81 ~a~i~l~~l~~~~~~~   96 (145)
T cd04038          81 EAEIDLEPLVEAAKLD   96 (145)
T ss_pred             EEEEEHHHhhhhhhhh
Confidence            9999999998765544

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.75  E-value=1.1e-17  Score=130.47  Aligned_cols=94  Identities=29%  Similarity=0.506  Sum_probs=83.6

Q ss_pred             eEEEEEEEeeecCCCCCCC-----CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-----TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT  278 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-----~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~~  278 (314)
                      |+|.|+|++|++|+..+..     .+||||++.++.+..+|+++++++||+|||.|.|.+..  ....|.|+|||++..+
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999987632     47999999999999999999999999999999999854  3347999999999999


Q ss_pred             CCceeEEEEEeCccccccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~~~  299 (314)
                      .|++||++.++|.+|..+...
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~~  101 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAPQ  101 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCCC
Confidence            999999999999999876654

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.74  E-value=1.5e-17  Score=132.93  Aligned_cols=98  Identities=22%  Similarity=0.400  Sum_probs=85.9

Q ss_pred             EEEEEEEeeec---CCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC----
Q 021294          207 LIKVNVVKGTN---LAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT----  278 (314)
Q Consensus       207 ~L~V~v~~a~~---L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~----  278 (314)
                      +|.|+|++|++   |+..+.. .+||||++.++.++.+|+++++++||+|||+|.|.+......|.|+|||++.++    
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~   80 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEA   80 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCcccccc
Confidence            48999999999   7777766 899999999999999999999999999999999999776678999999998874    


Q ss_pred             --CCceeEEEEEeCccccccccccCccc
Q 021294          279 --TDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       279 --~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                        .|++||++.++|..+..+.....+..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~~~~~~~~~  108 (126)
T cd08379          81 VQPDVLIGKVRIRLSTLEDDRVYAHSYP  108 (126)
T ss_pred             CCCCceEEEEEEEHHHccCCCEEeeEEE
Confidence              89999999999999987665444433

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.74  E-value=2.2e-17  Score=129.62  Aligned_cols=90  Identities=18%  Similarity=0.324  Sum_probs=78.7

Q ss_pred             eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECC----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGH----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      ...+.|+|+|++|++|+ . ...+||||++.+..    .+.+|+++++|+||.|||.|.|.++.   ....|.|+|||+|
T Consensus        11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            45689999999999998 2 23689999999943    56799999999999999999999875   3467999999999


Q ss_pred             CCCCCceeEEEEEeCcccc
Q 021294          276 TFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~  294 (314)
                      .++++++||++.+++.++.
T Consensus        89 rfs~~d~IG~v~l~l~~~~  107 (118)
T cd08677          89 RFSRHSTLGELRLKLADVS  107 (118)
T ss_pred             CCCCCceEEEEEEcccccc
Confidence            9999999999999999863

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>KOG0702 consensus Predicted GTPase-activating protein [Signal transduction mechanisms]

Probab=99.74  E-value=5.7e-18  Score=157.29  Aligned_cols=135  Identities=23%  Similarity=0.417  Sum_probs=112.6

Q ss_pred             CCCCCCCCcH-HHHHHHHHcCCCCCCCcCCCCCCC-CeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHH
Q 021294            7 NSDPKNVSGP-RARLENLLRQPGNRHCADCGSPDP-KWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDA   84 (314)
Q Consensus         7 ~~~~~~~~~~-~~~~~~l~~~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~   84 (314)
                      ++..++++.. +++||.|++.|+|++|++|....+ +|+.++.|-|||..|+|.-|.|.. -+|||||+|.+++..||..
T Consensus         2 a~~~ke~E~~~ek~iR~l~kLP~NrrC~nCnsl~~~t~~~~~~g~fv~~~~sg~ls~l~~-ahRvksiSmttft~qevs~   80 (524)
T KOG0702|consen    2 AGYKKEDEYDYEKEIRRLLKLPENRRCINCNSLVAATYVVYTVGSFVCTMCSGLLSGLNP-AHRVKSISMTTFTDQEVSF   80 (524)
T ss_pred             CcccccchhHHHHHHHHHhcCCCCCceeeccccccceEEEeeccceeeeccchhhccCCC-ccccceeeeeeccccchHH
Confidence            3455677776 999999999999999999999988 999999999999999999998853 4699999999999999999


Q ss_pred             HHHhcchhHHHHHHhhhCCCCCCCCCCC-CCHHHHHHHHhcccccceeeccccccccCCCC
Q 021294           85 LAEMGGNIAVNKKYEAYTPGNLKKPSPN-SFIDERSDFIRRKYEKLEFFNFDEQALLCPYP  144 (314)
Q Consensus        85 ~~~~gGN~~~n~~~e~~~~~~~~kp~~~-~~~~~r~~fI~~KY~~~~f~~~~~~~~~~~~~  144 (314)
                      |+. +||..+.++|-...... +---|+ .+.+.-++|||.||+.++|+.+..+.+...+.
T Consensus        81 lQs-hgNq~~k~i~fkl~D~q-~S~vPD~rn~~~~kef~q~~y~~kr~~v~~n~~k~~s~t  139 (524)
T KOG0702|consen   81 LQS-HGNQVCKEIWFKLFDFQ-RSNVPDSRNPQKVKEFQQEKYVKKRYYVPKNQMKIPSYT  139 (524)
T ss_pred             Hhh-cchhhhhhhhhcchhhh-hccCCCcccchhhHHHHhhhhccceeecCcccccccccc
Confidence            977 59999999998765433 223333 33455589999999999999988886665554

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.72  E-value=4.9e-17  Score=130.41  Aligned_cols=87  Identities=29%  Similarity=0.556  Sum_probs=80.2

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC------CCCcEEEEEEEcCCCCCC
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE------NIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~------~~~~L~i~v~d~d~~~~d  280 (314)
                      +.|+|++|++|+..+.. .+||||++.++.++.+|+++++++||+|||.|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            57999999999988766 89999999999999999999999999999999999865      356799999999999999


Q ss_pred             ceeEEEEEeCcccc
Q 021294          281 DFMGDAEIDIQPLV  294 (314)
Q Consensus       281 d~iG~~~v~l~~l~  294 (314)
                      ++||++.++|.++.
T Consensus        81 ~~iG~~~i~l~~l~   94 (126)
T cd08682          81 KFLGQVSIPLNDLD   94 (126)
T ss_pred             ceeEEEEEEHHHhh
Confidence            99999999999987

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.1e-16  Score=126.94  Aligned_cols=98  Identities=19%  Similarity=0.267  Sum_probs=82.3

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE-C----C--eEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEcC
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G----H--QTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKD  275 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~----~--~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d  275 (314)
                      .|+|+|++|++|+..+.+.+||||+|++ |    .  ++++|+++++++||+|||.|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            3889999999999887668999999998 3    2  357899999999999999999999742    245899999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      ..+.+++||++.++|.++..+.....|..
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~~~w~~  109 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSCACWLP  109 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcEEEEEE
Confidence            88889999999999999987665444433

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.71  E-value=1e-16  Score=127.91  Aligned_cols=93  Identities=30%  Similarity=0.444  Sum_probs=81.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEe-cC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v-~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|.|++|++|+..+...+||||++.+.     ..+.+|+++++++||.|||+|.|.+ +.   ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            4789999999999999883389999999995     3568999999999999999999987 32   4568999999999


Q ss_pred             CCCCCceeEEEEEeCccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .++++++||++.++|.++....
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~~  113 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLSQ  113 (122)
T ss_pred             CCcCCcEEEEEEEeccccccCC
Confidence            9999999999999999987554

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.70  E-value=1.8e-16  Score=128.87  Aligned_cols=94  Identities=33%  Similarity=0.623  Sum_probs=85.9

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCC
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTT  279 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~  279 (314)
                      ...+|.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+.. ....|.|+|||++.++.
T Consensus        11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~~~   90 (136)
T cd08375          11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFFSP   90 (136)
T ss_pred             CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCCCC
Confidence            34568999999999999988766 89999999999999999999999999999999999865 45679999999999999


Q ss_pred             CceeEEEEEeCccccc
Q 021294          280 DDFMGDAEIDIQPLVT  295 (314)
Q Consensus       280 dd~iG~~~v~l~~l~~  295 (314)
                      |++||++.++|.++..
T Consensus        91 d~~lG~~~i~l~~l~~  106 (136)
T cd08375          91 DDFLGRTEIRVADILK  106 (136)
T ss_pred             CCeeEEEEEEHHHhcc
Confidence            9999999999999886

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.69  E-value=3.1e-16  Score=124.36  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=79.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      ++.|.|+|++|++|+..+  ..||||++.+++++.+|++.+. .||.|||.|.|.+......|.|+|||++.+ .||+||
T Consensus         1 m~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG   76 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVG   76 (127)
T ss_pred             CceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceE
Confidence            468999999999997655  4599999999999999999988 499999999999977666699999999965 899999


Q ss_pred             EEEEeCcccccccc
Q 021294          285 DAEIDIQPLVTAAR  298 (314)
Q Consensus       285 ~~~v~l~~l~~~~~  298 (314)
                      ++.++|.++.....
T Consensus        77 ~v~i~L~~v~~~~~   90 (127)
T cd08394          77 TVWIPLSTIRQSNE   90 (127)
T ss_pred             EEEEEhHHcccCCC
Confidence            99999999886543

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.69  E-value=2.8e-16  Score=124.00  Aligned_cols=98  Identities=34%  Similarity=0.532  Sum_probs=86.6

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC-CCcEEEEEEEcCCCCCCceeE
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~-~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      +|+|+|++|++|+..+.. .+||||++.++++..+|+++++++||.|+|.|.|.+... ...|.|+|||++..+.+++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            478999999999998866 889999999999999999999999999999999998763 678999999999999999999


Q ss_pred             EEEEeCccccccccccCccc
Q 021294          285 DAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       285 ~~~v~l~~l~~~~~~~~~~~  304 (314)
                      .+.++|.++..+.....|..
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~  100 (116)
T cd08376          81 RCEIDLSALPREQTHSLELE  100 (116)
T ss_pred             EEEEeHHHCCCCCceEEEEE
Confidence            99999999886655544433

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.68  E-value=4.7e-16  Score=123.76  Aligned_cols=98  Identities=39%  Similarity=0.579  Sum_probs=86.1

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  285 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~  285 (314)
                      |.|+|++|++|+..+.. .+||||++.++. ...+|+++.+++||.|||.|.|.+......|.|+|||++..+.+++||.
T Consensus         2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG~   81 (121)
T cd04042           2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMGS   81 (121)
T ss_pred             eEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceEE
Confidence            78999999999988876 899999999976 6789999999999999999999987656789999999999999999999


Q ss_pred             EEEeCccccccccccCcccc
Q 021294          286 AEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       286 ~~v~l~~l~~~~~~~~~~~~  305 (314)
                      +.++|.++..+.....+..+
T Consensus        82 ~~~~l~~l~~~~~~~~~~~L  101 (121)
T cd04042          82 AFVDLSTLELNKPTEVKLKL  101 (121)
T ss_pred             EEEEHHHcCCCCCeEEEEEC
Confidence            99999999876555444433

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.68  E-value=3.9e-16  Score=123.59  Aligned_cols=96  Identities=34%  Similarity=0.577  Sum_probs=83.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~  282 (314)
                      |.|.|+|++|++|+..+.. .+||||++.++.+..+|+++. .++||.|||.|.|.+.. ....|.|+|||++..+ +++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            5799999999999988876 899999999999999999875 47999999999999976 4567999999999876 899


Q ss_pred             eEEEEEeCccccccccccCc
Q 021294          283 MGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       283 iG~~~v~l~~l~~~~~~~~~  302 (314)
                      ||++.+++.++..+.....|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w   99 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDW   99 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCc
Confidence            99999999998765443333

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.67  E-value=4.9e-16  Score=121.64  Aligned_cols=88  Identities=38%  Similarity=0.665  Sum_probs=80.3

Q ss_pred             EEEEEEeeecCCCCCC-C-CCCcEEEEEECCeEeeeeeecCCCCCcc-cceeEEEecCC---CCcEEEEEEEcCCCCCCc
Q 021294          208 IKVNVVKGTNLAVRDV-M-TSDPYVILALGHQTVKTRVIKSNLNPVW-NESLMLSIPEN---IPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~-~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w-~e~~~f~v~~~---~~~L~i~v~d~d~~~~dd  281 (314)
                      |.|+|++|++|+..+. . .+||||++.++.+..+|+++++++||.| +|.|.|.+...   ...|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            5799999999998874 3 7899999999999999999999999999 99999998652   368999999999999999


Q ss_pred             eeEEEEEeCccccc
Q 021294          282 FMGDAEIDIQPLVT  295 (314)
Q Consensus       282 ~iG~~~v~l~~l~~  295 (314)
                      +||++.++|.++..
T Consensus        81 ~iG~~~~~l~~l~~   94 (110)
T cd08688          81 AIGKVYIDLNPLLL   94 (110)
T ss_pred             ceEEEEEeHHHhcc
Confidence            99999999999986

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.67  E-value=5.6e-16  Score=121.52  Aligned_cols=90  Identities=34%  Similarity=0.644  Sum_probs=79.6

Q ss_pred             eEEEEEEEeeecCCCCCCC--CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM--TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  276 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~  276 (314)
                      |+|.|+|++|++|+..+..  .+||||++.+.   ....+|+++++++||.|||.|.|.+..    ....|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999988764  78999999983   346799999999999999999998754    24679999999999


Q ss_pred             CCCCceeEEEEEeCccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~  295 (314)
                      ++.+++||++.+++.+|..
T Consensus        81 ~~~dd~lG~~~i~l~~l~~   99 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE   99 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc
Confidence            9999999999999999973

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.67  E-value=6.7e-16  Score=126.40  Aligned_cols=101  Identities=23%  Similarity=0.361  Sum_probs=84.2

Q ss_pred             eeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE-EcCC
Q 021294          205 VGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY-DKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~-d~d~  276 (314)
                      .+.|.|+|++|++|+..+ .. .+||||++++.  +   .+.+|+++++++||+|||+|.|.+......|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            478999999999998764 33 78999999993  2   367999999999999999999999866678999999 6888


Q ss_pred             CCCCceeEEEEEeCccccccccccCcccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~~  305 (314)
                      ++++++||++.|+|..+..+.....|..+
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L  136 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLVIGWYKL  136 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCceeEEec
Confidence            88999999999999998655444344433

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.66  E-value=1.3e-15  Score=121.56  Aligned_cols=99  Identities=32%  Similarity=0.461  Sum_probs=86.1

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      .|.|+|++|++|+..+.. .+||||++.++++..+|+++++++||.|+|.|.|.+.. ....|.|+|||++..+.+++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            378999999999988876 78999999999999999999999999999999999876 3467999999999999999999


Q ss_pred             EEEEeCccccccccccCcccc
Q 021294          285 DAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       285 ~~~v~l~~l~~~~~~~~~~~~  305 (314)
                      .+.++|.++..+.....|..+
T Consensus        81 ~~~~~l~~l~~~~~~~~w~~L  101 (123)
T cd04025          81 KVVFSIQTLQQAKQEEGWFRL  101 (123)
T ss_pred             EEEEEHHHcccCCCCCCEEEC
Confidence            999999999765444444433

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.66  E-value=7.9e-16  Score=123.23  Aligned_cols=91  Identities=27%  Similarity=0.354  Sum_probs=80.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcCCCCCCc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d~~~~dd  281 (314)
                      -++.|.|+|++|++|+......+||||+|.++++..+|+++++++||+|||+|.|...  .....|+|+|||++.++.|+
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~dd  105 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWDDD  105 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCCCC
Confidence            4579999999999998533337899999999999999999999999999999999743  24678999999999999999


Q ss_pred             eeEEEEEeCcccc
Q 021294          282 FMGDAEIDIQPLV  294 (314)
Q Consensus       282 ~iG~~~v~l~~l~  294 (314)
                      +||.+.++|....
T Consensus       106 ~IG~~~i~l~~~~  118 (127)
T cd04032         106 LLGTCSVVPEAGV  118 (127)
T ss_pred             eeEEEEEEecCCc
Confidence            9999999999665

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.66  E-value=1.2e-15  Score=122.28  Aligned_cols=90  Identities=37%  Similarity=0.680  Sum_probs=83.2

Q ss_pred             eEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294          206 GLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~--~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd  281 (314)
                      |.|.|+|++|++|+..+.  . .+||||++.++.+..+|+++++++||.|+|.|.|.+.. ....|.|+|||++..+.++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            689999999999998886  5 89999999999999999999999999999999999976 5678999999999998999


Q ss_pred             eeEEEEEeCccccc
Q 021294          282 FMGDAEIDIQPLVT  295 (314)
Q Consensus       282 ~iG~~~v~l~~l~~  295 (314)
                      +||.+.++|.++..
T Consensus        81 ~lG~~~i~l~~~~~   94 (128)
T cd04024          81 YLGEFDIALEEVFA   94 (128)
T ss_pred             cceEEEEEHHHhhc
Confidence            99999999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.66  E-value=1.4e-15  Score=120.38  Aligned_cols=92  Identities=30%  Similarity=0.581  Sum_probs=84.0

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      |.|.|+|++|++|+..+.. .+||||++.++....+|++++++.||.|+|+|.|.+......|.|+|||++..+.+++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            6799999999999988876 899999999998889999999999999999999998765678999999999988999999


Q ss_pred             EEEEeCccccccc
Q 021294          285 DAEIDIQPLVTAA  297 (314)
Q Consensus       285 ~~~v~l~~l~~~~  297 (314)
                      ++.+++.++..+.
T Consensus        81 ~~~~~l~~~~~~~   93 (119)
T cd08377          81 KVAIPLLSIKNGE   93 (119)
T ss_pred             EEEEEHHHCCCCC
Confidence            9999999987553

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.65  E-value=1.2e-15  Score=122.20  Aligned_cols=98  Identities=30%  Similarity=0.406  Sum_probs=83.0

Q ss_pred             eeeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294          203 EFVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY  272 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~  272 (314)
                      ...+.|.|.|++|++|+..+.  ..+||||++++.     ..+.+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            456789999999999988764  379999999993     235789999999999999999999864   3457999999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      |++.++++++||++.++|..+.......
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~~  119 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQHE  119 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCcc
Confidence            9999999999999999999986554433

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.65  E-value=1.1e-15  Score=122.53  Aligned_cols=92  Identities=32%  Similarity=0.484  Sum_probs=80.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC--CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      .+.|.|+|++|++|+..+..  .+||||++++.     ..+.+|+++++++||.|||.|.|.+..   ....|.|+|||+
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~   93 (125)
T cd08393          14 LRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR   93 (125)
T ss_pred             CCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence            46899999999999998853  79999999993     245799999999999999999999864   346799999999


Q ss_pred             CCCCCCceeEEEEEeCcccccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      +.++++++||++.++|.++...
T Consensus        94 ~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          94 DSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             CCCCCCcEeEEEEEecCccccC
Confidence            9999999999999999998644

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.65  E-value=1.8e-15  Score=120.53  Aligned_cols=96  Identities=30%  Similarity=0.582  Sum_probs=85.1

Q ss_pred             eeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC--eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~--~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d  280 (314)
                      +|.|.|+|++|++|+..+..  .+||||++.++.  ...+|++++++.||.|||.|.|.+......|.|+|||++..+.+
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            47899999999999965533  689999999977  78999999999999999999999886678899999999999899


Q ss_pred             ceeEEEEEeCcccccccccc
Q 021294          281 DFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       281 d~iG~~~v~l~~l~~~~~~~  300 (314)
                      ++||.+.++|.++.......
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~  100 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQE  100 (124)
T ss_pred             ceeEEEEEEHHHhccCcccc
Confidence            99999999999998765543

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.64  E-value=2.1e-15  Score=120.08  Aligned_cols=96  Identities=22%  Similarity=0.399  Sum_probs=82.7

Q ss_pred             EEEEEEeeecCCCCCC--CCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          208 IKVNVVKGTNLAVRDV--MTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~--~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      |.|+|++|++|+..+.  ..+||||.+.++++ ..+|+++++++||.|||.|.|.+.+....|.|.|||++.++++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            6789999999998643  27899999999765 57999999999999999999999876678999999999999999999


Q ss_pred             EEEEeCccccccccccCcc
Q 021294          285 DAEIDIQPLVTAARACETP  303 (314)
Q Consensus       285 ~~~v~l~~l~~~~~~~~~~  303 (314)
                      .+.++|+++..+.....|.
T Consensus        82 ~~~i~l~~l~~~~~~~~w~  100 (121)
T cd08401          82 KVAIKKEDLHKYYGKDTWF  100 (121)
T ss_pred             EEEEEHHHccCCCCcEeeE
Confidence            9999999997655444333

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.64  E-value=1.6e-15  Score=121.66  Aligned_cols=94  Identities=23%  Similarity=0.425  Sum_probs=81.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEEC--CeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALG--HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  285 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~--~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~  285 (314)
                      |.|+|++|++|+. ..+.+||||++.++  .+..+|+++++++||.|||.|.|.+......|.|+|||++..+.+++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            5799999999988 44489999999997  36689999999999999999999997666789999999999999999999


Q ss_pred             EEEeCccccccccccCc
Q 021294          286 AEIDIQPLVTAARACET  302 (314)
Q Consensus       286 ~~v~l~~l~~~~~~~~~  302 (314)
                      +.++|.++........+
T Consensus        80 ~~i~l~~l~~~~~~~~~   96 (126)
T cd08678          80 AIVPFDELRKNPSGRQI   96 (126)
T ss_pred             EEEeHHHhccCCceeEE
Confidence            99999998866544433

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.64  E-value=1.7e-15  Score=117.52  Aligned_cols=88  Identities=26%  Similarity=0.455  Sum_probs=79.5

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      .|.|+|++|++|+..+.. .+||||++.++++..+|++++++.||.|||.|.|.+.. ....|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            378999999999988766 89999999999999999999999999999999999976 45789999999886   78999


Q ss_pred             EEEEeCccccccc
Q 021294          285 DAEIDIQPLVTAA  297 (314)
Q Consensus       285 ~~~v~l~~l~~~~  297 (314)
                      ++.++|.++....
T Consensus        78 ~~~i~l~~l~~~~   90 (105)
T cd04050          78 SLTLPLSELLKEP   90 (105)
T ss_pred             EEEEEHHHhhccc
Confidence            9999999998653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.64  E-value=2.4e-15  Score=119.57  Aligned_cols=101  Identities=23%  Similarity=0.428  Sum_probs=87.4

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCcee
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM  283 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~i  283 (314)
                      |.|.|+|++|++|+..+.. .+||||++.+++ ...+|++++++.||.|||.|.|.+......|.|+|||++..+.+++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            6799999999999988766 899999999976 56899999999999999999999877667899999999999999999


Q ss_pred             EEEEEeCccccccccccCcccccC
Q 021294          284 GDAEIDIQPLVTAARACETPISMS  307 (314)
Q Consensus       284 G~~~v~l~~l~~~~~~~~~~~~~~  307 (314)
                      |++.++|.++... ....+..++.
T Consensus        81 G~~~~~l~~l~~~-~~~~~~~~~~  103 (120)
T cd04045          81 GSVEINVSDLIKK-NEDGKYVEYD  103 (120)
T ss_pred             eEEEEeHHHhhCC-CCCceEEecC
Confidence            9999999999876 4444444443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.64  E-value=1.9e-15  Score=120.63  Aligned_cols=94  Identities=21%  Similarity=0.270  Sum_probs=81.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC------CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG------HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~------~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|+||+..+.. .+||||++++-      ..+.+|+++++++||+|||+|.|.++.   ....|.|.||+
T Consensus        12 ~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~   91 (124)
T cd08680          12 GDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCS   91 (124)
T ss_pred             CCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEe
Confidence            446899999999999988765 78999999982      247899999999999999999999865   45789999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      ++.++++++||++.++|.++-...
T Consensus        92 ~~~~~~~~~lG~~~i~L~~~~~~~  115 (124)
T cd08680          92 VGPDQQEECLGGAQISLADFESSE  115 (124)
T ss_pred             CCCCCceeEEEEEEEEhhhccCCC
Confidence            999999999999999999985443

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.64  E-value=1.5e-15  Score=121.91  Aligned_cols=89  Identities=31%  Similarity=0.502  Sum_probs=80.0

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEcCCCC-CC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFT-TD  280 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d~~~-~d  280 (314)
                      .|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+...    ...|.|+|||++.++ .+
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            378999999999988765 899999999999999999999999999999999998642    357999999999886 89


Q ss_pred             ceeEEEEEeCccccc
Q 021294          281 DFMGDAEIDIQPLVT  295 (314)
Q Consensus       281 d~iG~~~v~l~~l~~  295 (314)
                      ++||++.+++.++..
T Consensus        81 ~~lG~v~i~l~~l~~   95 (127)
T cd04022          81 SFLGRVRISGTSFVP   95 (127)
T ss_pred             CeeeEEEEcHHHcCC
Confidence            999999999999873

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.64  E-value=3.4e-15  Score=118.87  Aligned_cols=99  Identities=25%  Similarity=0.586  Sum_probs=85.1

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  285 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~  285 (314)
                      |.|+|++|++|+..+.. .+||||++.+++.. .+|+++++++||.|||.|.|.+......|.|+|||++.++.+++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            78999999999998876 89999999997654 69999999999999999999987666789999999999999999999


Q ss_pred             EEEeCccccccccccCccccc
Q 021294          286 AEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       286 ~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      +.+++..+.......+.|..+
T Consensus        82 ~~~~~~~~~~~~~~~~~W~~L  102 (121)
T cd04054          82 VSLTREVISAHPRGIDGWMNL  102 (121)
T ss_pred             EEEcHHHhccCCCCCCcEEEC
Confidence            999998887544434445444

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.64  E-value=1.5e-15  Score=120.45  Aligned_cols=95  Identities=33%  Similarity=0.507  Sum_probs=81.6

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~  282 (314)
                      |.|+|++|++|+..+.. .+||||++.++   ....+|++++++.||.|||.|.|.+.. ....|.|+|||++.+ .+++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            78999999999988765 89999999985   366899999999999999999999865 345699999999998 8999


Q ss_pred             eEEEEEeCccccccccccCcc
Q 021294          283 MGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       283 iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      ||++.+++.++..+.....+.
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~  101 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTF  101 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEE
Confidence            999999999998765544333

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.64  E-value=2.3e-15  Score=124.03  Aligned_cols=90  Identities=28%  Similarity=0.441  Sum_probs=80.4

Q ss_pred             EEEEEEeeecCCCCCCC---------------CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEE
Q 021294          208 IKVNVVKGTNLAVRDVM---------------TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVL  270 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~---------------~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~  270 (314)
                      |.|+|++|++|+.++..               .+||||+|.+++++.+|+++++++||+|||+|.|.+.  .....|.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            78999999999988743               4799999999999999999999999999999999864  245689999


Q ss_pred             EEEcCCCCCCceeEEEEEeCccccccc
Q 021294          271 VYDKDTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       271 v~d~d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      |||++..+.|++||.+.++|.++....
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~~  108 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNSG  108 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccCC
Confidence            999999999999999999999987644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.63  E-value=2.3e-15  Score=120.26  Aligned_cols=97  Identities=28%  Similarity=0.478  Sum_probs=83.2

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.   ....+|+++++++||.|||.|.|.+..   ....|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            346899999999999988866 88999999983   346799999999999999999999864   24579999999999


Q ss_pred             CCCCceeEEEEEeCcccccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      ++.+++||++.++|.++..+....
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~~~~~  117 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLGHVTE  117 (124)
T ss_pred             CCCCceeEEEEEecCcccCCCCcc
Confidence            999999999999999987644433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.63  E-value=2.8e-15  Score=118.98  Aligned_cols=100  Identities=34%  Similarity=0.617  Sum_probs=85.6

Q ss_pred             eEEEEEEEeeecCCCCCC-------CCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCC
Q 021294          206 GLIKVNVVKGTNLAVRDV-------MTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTF  277 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~-------~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~  277 (314)
                      |.|.|+|++|++|+..+.       ..+||||++.++++..+|++++++.||.|+|.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            579999999999998764       268999999999999999999999999999999999865 567899999999988


Q ss_pred             CCCceeEEEEEeCccccccccccCcccccC
Q 021294          278 TTDDFMGDAEIDIQPLVTAARACETPISMS  307 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~  307 (314)
                       .+++||.+.++|.++...... ..|..+.
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~-~~w~~L~  108 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFI-DEWLPLE  108 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCcc-ceEEECc
Confidence             899999999999999865543 3444433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.63  E-value=3e-15  Score=119.64  Aligned_cols=99  Identities=29%  Similarity=0.520  Sum_probs=85.3

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.   .+..+|+++++++||.|+|.|.|.+..   ....|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~   93 (124)
T cd08387          14 DMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQ   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCC
Confidence            357899999999999988866 89999999983   356899999999999999999999865   24579999999999


Q ss_pred             CCCCceeEEEEEeCccccccccccCc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      ++++++||++.++|.++..+.....|
T Consensus        94 ~~~~~~iG~~~i~l~~~~~~~~~~~W  119 (124)
T cd08387          94 FSRDECIGVVELPLAEVDLSEKLDLW  119 (124)
T ss_pred             CCCCceeEEEEEecccccCCCCcceE
Confidence            99999999999999999866544443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.63  E-value=3.6e-15  Score=119.14  Aligned_cols=98  Identities=32%  Similarity=0.535  Sum_probs=85.9

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecCC----CCcEEEEEEEcCCCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN----IPPLKVLVYDKDTFTT  279 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~~----~~~L~i~v~d~d~~~~  279 (314)
                      |.|.|+|++|++|+..+.. .+||||++.++.+..+|++.+. +.||.|||.|.|.+...    ...|.|+|||++.++.
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            5799999999999988766 8999999999999899999875 89999999999999764    4679999999999999


Q ss_pred             CceeEEEEEeCccccccccccCcc
Q 021294          280 DDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       280 dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      +++||.+.++|.++..+.....|.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~  104 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTA  104 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCce
Confidence            999999999999998765544443

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.63  E-value=2.4e-15  Score=119.36  Aligned_cols=94  Identities=19%  Similarity=0.335  Sum_probs=79.9

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF  277 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~  277 (314)
                      .+.|.|+|++|++|+..+...+||||++.+..     .+.+|++++++.||.|||.|.|.+..  ....|.|.|||++..
T Consensus        11 ~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~~   90 (119)
T cd08685          11 NRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLSK   90 (119)
T ss_pred             CCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCCC
Confidence            46899999999999988855899999999942     45689999999999999999999864  235688999999987


Q ss_pred             C-CCceeEEEEEeCcccccccc
Q 021294          278 T-TDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       278 ~-~dd~iG~~~v~l~~l~~~~~  298 (314)
                      . .+++||.+.++|.++..+..
T Consensus        91 ~~~~~~lG~~~i~l~~~~~~~~  112 (119)
T cd08685          91 SRDSGLLGCMSFGVKSIVNQKE  112 (119)
T ss_pred             cCCCEEEEEEEecHHHhccCcc
Confidence            6 47899999999999985443

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.62  E-value=4.9e-15  Score=122.28  Aligned_cols=90  Identities=29%  Similarity=0.419  Sum_probs=81.2

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecC-CCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCcee
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFM  283 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~-tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~i  283 (314)
                      .|.|+|++|++|+..+.. .+||||++.++++..+|+++.+ ++||.|||.|.|.+.+ ....|.|+|||++..+.+++|
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~l   80 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPL   80 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeE
Confidence            478999999999998877 8999999999999999999977 6999999999999865 346899999999998899999


Q ss_pred             EEEEEeCcccccc
Q 021294          284 GDAEIDIQPLVTA  296 (314)
Q Consensus       284 G~~~v~l~~l~~~  296 (314)
                      |++.++|.++..+
T Consensus        81 G~v~i~L~~l~~~   93 (150)
T cd04019          81 GRAVIPLNDIERR   93 (150)
T ss_pred             EEEEEEHHHCccc
Confidence            9999999998653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.62  E-value=4.4e-15  Score=119.35  Aligned_cols=93  Identities=27%  Similarity=0.373  Sum_probs=80.9

Q ss_pred             eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|.|++|++|+..+.  ..+||||++++.     ..+.+|+++++++||+|||+|.|.+..   ....|.|.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            34689999999999998875  488999999993     246799999999999999999999865   34689999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      ++.++.+++||++.|+|.++...
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~~  115 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDFE  115 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCcccC
Confidence            99999999999999999988543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.62  E-value=7.9e-15  Score=117.62  Aligned_cols=89  Identities=25%  Similarity=0.478  Sum_probs=80.8

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      .+|.|+|++|++|+..+.. .+||||++.++.+..+|++++++.||.|||.|.|.+......|.|+|||++..+ +++||
T Consensus         3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~~-d~~lG   81 (126)
T cd04046           3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLLC-DEFLG   81 (126)
T ss_pred             EEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCCC-CCceE
Confidence            5799999999999988766 899999999999999999999999999999999988776778999999998874 89999


Q ss_pred             EEEEeCccccc
Q 021294          285 DAEIDIQPLVT  295 (314)
Q Consensus       285 ~~~v~l~~l~~  295 (314)
                      .+.+++.++..
T Consensus        82 ~~~~~l~~~~~   92 (126)
T cd04046          82 QATLSADPNDS   92 (126)
T ss_pred             EEEEecccCCC
Confidence            99999987643

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.62  E-value=4.3e-15  Score=124.25  Aligned_cols=102  Identities=26%  Similarity=0.386  Sum_probs=85.1

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEE
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVY  272 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~  272 (314)
                      ...|.|.|+|++|++|+..+.. .+||||++.+     +....+|+++++++||.|||.|.|.+..    ....|.|+||
T Consensus        24 ~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~  103 (162)
T cd04020          24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVW  103 (162)
T ss_pred             CCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEE
Confidence            3568999999999999998866 8999999988     2357899999999999999999998532    2357999999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccccCccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      |++.++++++||++.+++..+.......+|..
T Consensus       104 d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~  135 (162)
T cd04020         104 DHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMD  135 (162)
T ss_pred             eCCCCCCCceEEEEEEeCCccccCCCcccccc
Confidence            99999999999999999999865444444433

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.61  E-value=4.5e-15  Score=122.07  Aligned_cols=88  Identities=26%  Similarity=0.404  Sum_probs=76.9

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEec------------C----CCCc
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP------------E----NIPP  266 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~------------~----~~~~  266 (314)
                      |.|+|++|++|+. ..+.+||||+|.+..     ++.+|+++++++||+|||.|.|.+.            .    ....
T Consensus         2 L~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~   80 (148)
T cd04010           2 LSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLE   80 (148)
T ss_pred             EEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEE
Confidence            7899999999988 334899999999965     5789999999999999999999984            1    1246


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294          267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      |.|.|||++..+.++|||++.|+|..+...
T Consensus        81 L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          81 LRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             EEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            899999999988999999999999998865

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.61  E-value=3.2e-15  Score=121.44  Aligned_cols=89  Identities=25%  Similarity=0.432  Sum_probs=77.7

Q ss_pred             eeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY  272 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~---~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~  272 (314)
                      ..+.|.|.|++|++|+..+.   ..+||||++++..     .+.+|+++++++||+|||.|.|.++.   ....|.|+||
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            45789999999999998873   2589999999843     25689999999999999999999975   3467999999


Q ss_pred             EcCCCCCCceeEEEEEeCcc
Q 021294          273 DKDTFTTDDFMGDAEIDIQP  292 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~  292 (314)
                      |++.++++++||++.+++..
T Consensus        93 d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          93 NQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             eCCCCcCcceeceEEecCcC
Confidence            99999999999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.60  E-value=8.4e-15  Score=118.38  Aligned_cols=92  Identities=36%  Similarity=0.681  Sum_probs=81.9

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-------EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  278 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~-------~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~  278 (314)
                      .|.|+|++|++|+..+.. .+||||++.+...       ..+|+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            378999999999988876 8999999999654       46899999999999999999999775678999999999999


Q ss_pred             CCceeEEEEEeCcccccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~~  298 (314)
                      .+++||++.+++.++.....
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~  100 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETP  100 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCc
Confidence            99999999999999886543

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.60  E-value=8.5e-15  Score=116.98  Aligned_cols=90  Identities=30%  Similarity=0.470  Sum_probs=79.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||.|.|.+..    ....|.|+|||
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            447899999999999988776 899999999953     56799999999999999999998633    34679999999


Q ss_pred             cCCCCCCceeEEEEEeCccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l  293 (314)
                      ++..+.+++||++.++|.+.
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~  113 (125)
T cd04031          94 YDRDGENDFLGEVVIDLADA  113 (125)
T ss_pred             CCCCCCCcEeeEEEEecccc
Confidence            99999999999999999984

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.60  E-value=9.2e-15  Score=117.57  Aligned_cols=92  Identities=32%  Similarity=0.451  Sum_probs=78.7

Q ss_pred             eeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|+|++|++|+..+.  ..+||||++.+.   .++.+|+++++++||.|||+|.|. +..   ....|.|+|||++
T Consensus        15 ~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d   94 (128)
T cd08388          15 KKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFD   94 (128)
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcC
Confidence            4689999999999998775  378999999984   456799999999999999999994 432   3356999999999


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      .++++++||++.++|.++-..
T Consensus        95 ~~~~d~~lG~~~i~L~~l~~~  115 (128)
T cd08388          95 RYSRDDVIGEVVCPLAGADLL  115 (128)
T ss_pred             CCCCCceeEEEEEeccccCCC
Confidence            999999999999999988543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.60  E-value=1.1e-14  Score=116.75  Aligned_cols=96  Identities=31%  Similarity=0.377  Sum_probs=82.6

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.     ....+|++++++.||.|||+|.|.+..   ....|.|.|||+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            347899999999999998876 89999999984     467899999999999999999999854   246799999999


Q ss_pred             CCC--CCCceeEEEEEeCccccccccc
Q 021294          275 DTF--TTDDFMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       275 d~~--~~dd~iG~~~v~l~~l~~~~~~  299 (314)
                      +.+  +.+++||++.++|.++..+...
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~~~~  120 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLSKGF  120 (127)
T ss_pred             CcccCCCCceEEEEEEecccccccCCc
Confidence            875  6899999999999998655443

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.60  E-value=1.2e-14  Score=116.14  Aligned_cols=96  Identities=26%  Similarity=0.478  Sum_probs=82.0

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+   +.+..+|+++++++||.|||.|.|.+..    ....|.|+|||++.
T Consensus        15 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          15 ESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCC
Confidence            46899999999999988866 8999999998   3467899999999999999999997532    23569999999999


Q ss_pred             CCCCceeEEEEEeCcccccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      .+.+++||++.++|.++..+....
T Consensus        95 ~~~~~~iG~~~i~l~~l~~~~~~~  118 (125)
T cd08386          95 FSRNDPIGEVSLPLNKVDLTEEQT  118 (125)
T ss_pred             CcCCcEeeEEEEecccccCCCCcc
Confidence            999999999999999987654433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.60  E-value=1.1e-14  Score=116.21  Aligned_cols=89  Identities=27%  Similarity=0.551  Sum_probs=79.7

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEEC-CeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCC--Ccee
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALG-HQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT--DDFM  283 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~--dd~i  283 (314)
                      |.|+|++|++|+..+.. .+||||++.++ .+.++|+++++++||.|||.|.|.+.. ...|.|+|||++.++.  +++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            78999999999988876 89999999996 778899999999999999999999966 5789999999998875  5799


Q ss_pred             EEEEEeCccccccc
Q 021294          284 GDAEIDIQPLVTAA  297 (314)
Q Consensus       284 G~~~v~l~~l~~~~  297 (314)
                      |++.+++.++....
T Consensus        81 G~~~i~l~~l~~~~   94 (123)
T cd08382          81 GCVRIRANAVLPLK   94 (123)
T ss_pred             eEEEEEHHHccccC
Confidence            99999999987544

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.59  E-value=1.8e-14  Score=119.98  Aligned_cols=103  Identities=28%  Similarity=0.422  Sum_probs=85.9

Q ss_pred             eeeeEEEEEEEeeecCCCCCC-----------------------------C--CCCcEEEEEECCeE-eeeeeecCCCCC
Q 021294          203 EFVGLIKVNVVKGTNLAVRDV-----------------------------M--TSDPYVILALGHQT-VKTRVIKSNLNP  250 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~-----------------------------~--~~dPyv~v~l~~~~-~kT~~~~~tlnP  250 (314)
                      -.-|.|.|+|++|++|+.+|.                             .  .+||||++.+++.. .+|++++++.||
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP   83 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence            355899999999999998772                             1  57999999998754 699999999999


Q ss_pred             cccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCccccc
Q 021294          251 VWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       251 ~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      .|||.|.|.+......|.|+|||++.++ +++||.+.+++.++..+.....|..+.
T Consensus        84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~  138 (158)
T cd04015          84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPIL  138 (158)
T ss_pred             ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECc
Confidence            9999999998766678999999999875 589999999999998766554444443

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.59  E-value=9.5e-15  Score=118.27  Aligned_cols=93  Identities=29%  Similarity=0.399  Sum_probs=81.3

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------CeEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVL  270 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-------~~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~  270 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.       ....+|+++++++||+|||.|.|.+..     ....|.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            346899999999999988765 89999999984       356899999999999999999999864     24579999


Q ss_pred             EEEcCCCCCCceeEEEEEeCcccccc
Q 021294          271 VYDKDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       271 v~d~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      |||++.++++++||++.++|.++...
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~~  119 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPGV  119 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCcc
Confidence            99999999999999999999998743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.59  E-value=7.9e-15  Score=116.80  Aligned_cols=86  Identities=34%  Similarity=0.531  Sum_probs=78.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeEE
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGD  285 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~  285 (314)
                      .|.|+|++|++|+..   .+||||++.++.+..+|+++++++||.|||+|.|.+.. ....|.|+|||++.. .+++||+
T Consensus         1 ~L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~   76 (121)
T cd08378           1 YLYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGG   76 (121)
T ss_pred             CEEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeee
Confidence            378999999999887   68999999999999999999999999999999999865 567899999999987 7899999


Q ss_pred             EEEeCcccccc
Q 021294          286 AEIDIQPLVTA  296 (314)
Q Consensus       286 ~~v~l~~l~~~  296 (314)
                      +.++|.++...
T Consensus        77 ~~i~l~~l~~~   87 (121)
T cd08378          77 VCFDLSEVPTR   87 (121)
T ss_pred             EEEEhHhCcCC
Confidence            99999998653

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.58  E-value=2.6e-14  Score=114.63  Aligned_cols=98  Identities=19%  Similarity=0.386  Sum_probs=80.3

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd  281 (314)
                      +...|.|+|++|++|+..+  .+||||++.+++. ..+|++. +++||.|||.|.|.+.. ....|.|.|||++..++++
T Consensus         2 ~~~~L~V~Vi~A~~L~~~~--~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~   78 (126)
T cd08400           2 QVRSLQLNVLEAHKLPVKH--VPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDS   78 (126)
T ss_pred             ceeEEEEEEEEeeCCCCCC--CCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCC
Confidence            3457999999999998764  6899999999874 4688874 68999999999998654 3357899999999999999


Q ss_pred             eeEEEEEeCccccccccccCccc
Q 021294          282 FMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       282 ~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      +||++.++|..+..+.....|..
T Consensus        79 ~iG~v~i~l~~l~~~~~~~~W~~  101 (126)
T cd08400          79 EIAEVTVQLSKLQNGQETDEWYP  101 (126)
T ss_pred             eEEEEEEEHhHccCCCcccEeEE
Confidence            99999999999887655443333

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.58  E-value=1.7e-14  Score=114.84  Aligned_cols=95  Identities=32%  Similarity=0.487  Sum_probs=81.5

Q ss_pred             eeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+..+ .. .+||||++.+.     ....+|+++++++||.|||.|.|.+..   ....|.|+|||
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d   91 (123)
T cd08521          12 KTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWH   91 (123)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEe
Confidence            3478999999999999887 44 89999999883     146799999999999999999999865   24679999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      ++.++++++||++.++|.++..+..
T Consensus        92 ~~~~~~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd08521          92 HDRFGRNTFLGEVEIPLDSWDLDSQ  116 (123)
T ss_pred             CCCCcCCceeeEEEEecccccccCC
Confidence            9999999999999999999964443

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.58  E-value=6.4e-15  Score=119.57  Aligned_cols=89  Identities=28%  Similarity=0.362  Sum_probs=77.3

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~--~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|+|++|++|+..+.. .+||||++++.   .  .+.+|+++++++||+|||+|.|.++.   ....|.|+|||++
T Consensus        14 ~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d   93 (136)
T cd08406          14 AERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST   93 (136)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence            46899999999999988865 89999999992   2  25689999999999999999999865   4567999999999


Q ss_pred             CCCCCceeEEEEEeCccc
Q 021294          276 TFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l  293 (314)
                      .++++++||++.+.....
T Consensus        94 ~~~~~~~iG~v~lg~~~~  111 (136)
T cd08406          94 EDGKTPNVGHVIIGPAAS  111 (136)
T ss_pred             CCCCCCeeEEEEECCCCC
Confidence            999999999999987654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.57  E-value=1.8e-14  Score=117.22  Aligned_cols=98  Identities=26%  Similarity=0.413  Sum_probs=82.8

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEEC----CeEeeeeeecCCCCCcccceeEEEecCC----------------CCcE
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPL  267 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~----~~~~kT~~~~~tlnP~w~e~~~f~v~~~----------------~~~L  267 (314)
                      |.|+|++|++|+......+||||++.++    .+..+|++++++.||.|+|.|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5789999999987733389999999997    7789999999999999999999997552                3579


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccccccCcccc
Q 021294          268 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       268 ~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~  305 (314)
                      .|+|||++..+.+++||++.++|.++........|..+
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L  118 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFL  118 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEec
Confidence            99999999988999999999999998865555444443

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.57  E-value=3e-14  Score=115.12  Aligned_cols=92  Identities=26%  Similarity=0.489  Sum_probs=81.5

Q ss_pred             eeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLV  271 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~-----------~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v  271 (314)
                      +.|.|.|+|++|++|+..+.           ..+||||++.++++. .+|+++++++||.|||+|.|.+. ....|.|.|
T Consensus         2 ~~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v   80 (132)
T cd04014           2 FTGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTV   80 (132)
T ss_pred             cceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEE
Confidence            35889999999999988775           268999999998765 58999999999999999999996 447899999


Q ss_pred             EEcCCCCCCceeEEEEEeCcccccc
Q 021294          272 YDKDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       272 ~d~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      ||++.++.+++||++.++|.++..+
T Consensus        81 ~d~~~~~~~~~iG~~~i~l~~l~~~  105 (132)
T cd04014          81 FHDAAIGPDDFVANCTISFEDLIQR  105 (132)
T ss_pred             EeCCCCCCCceEEEEEEEhHHhccc
Confidence            9999988999999999999999873

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.57  E-value=2.6e-14  Score=114.76  Aligned_cols=88  Identities=38%  Similarity=0.650  Sum_probs=78.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCC--------
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF--------  277 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~--------  277 (314)
                      .|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+......|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            589999999999998876 88999999999889999999999999999999998865557899999999852        


Q ss_pred             ---CCCceeEEEEEeCcccc
Q 021294          278 ---TTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       278 ---~~dd~iG~~~v~l~~l~  294 (314)
                         +.+++||++.+++.++.
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~  101 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLS  101 (127)
T ss_pred             ccccCCCcceEEEEEhHHcc
Confidence               47899999999999875

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.57  E-value=2.2e-14  Score=112.37  Aligned_cols=89  Identities=25%  Similarity=0.379  Sum_probs=78.9

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEEEcCCCCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~d~d~~~~d  280 (314)
                      -.|.|+|++|++|+   ....||||++.+++++.+|++++++.||.|+|.|.|.+..     ....|.|+|||++.++.+
T Consensus         4 ~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~~   80 (111)
T cd04011           4 FQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRSD   80 (111)
T ss_pred             EEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccccC
Confidence            46899999999998   3478999999999999999999999999999999998743     235799999999999899


Q ss_pred             ceeEEEEEeCccccccc
Q 021294          281 DFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       281 d~iG~~~v~l~~l~~~~  297 (314)
                      ++||++.++|..+....
T Consensus        81 ~~iG~~~i~l~~v~~~~   97 (111)
T cd04011          81 TLIGSFKLDVGTVYDQP   97 (111)
T ss_pred             CccEEEEECCccccCCC
Confidence            99999999999997653

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.57  E-value=2.8e-14  Score=114.11  Aligned_cols=88  Identities=33%  Similarity=0.541  Sum_probs=78.1

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE--eeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~--~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~  282 (314)
                      +|.|.|++|++|+..+.. .+||||++.++.+.  .+|.++++++||.|||.|.|.+.. ....|.|+|||++.++.+++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            378999999999988876 89999999998765  478888899999999999998754 45689999999999999999


Q ss_pred             eEEEEEeCcccc
Q 021294          283 MGDAEIDIQPLV  294 (314)
Q Consensus       283 iG~~~v~l~~l~  294 (314)
                      ||++.++|.+..
T Consensus        81 iG~~~i~l~~~~   92 (124)
T cd04037          81 IGETVIDLEDRF   92 (124)
T ss_pred             eEEEEEeecccc
Confidence            999999998775

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.57  E-value=1.4e-14  Score=117.25  Aligned_cols=91  Identities=32%  Similarity=0.461  Sum_probs=79.6

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEE
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVY  272 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~  272 (314)
                      ....+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||+|.|.+..   ....|.|+||
T Consensus         9 ~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~   88 (133)
T cd08384           9 NTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVW   88 (133)
T ss_pred             cCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEE
Confidence            34568999999999999998876 899999999842     45799999999999999999999864   2457999999


Q ss_pred             EcCCCCCCceeEEEEEeCcc
Q 021294          273 DKDTFTTDDFMGDAEIDIQP  292 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~  292 (314)
                      |++..+.+++||++.+++..
T Consensus        89 d~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          89 DKDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             eCCCCCCccEEEEEEEecCC
Confidence            99999999999999999985

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.57  E-value=1.9e-14  Score=115.04  Aligned_cols=96  Identities=23%  Similarity=0.375  Sum_probs=80.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d  275 (314)
                      ..+.|.|+|++|++|+..+.. ..||||++.+   ..++.+|++++. .||+|||.|.|. +..   ....|.|.|||++
T Consensus        14 ~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~   92 (124)
T cd08389          14 SARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVE   92 (124)
T ss_pred             CCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECC
Confidence            346899999999999998866 7899999877   246789999888 999999999998 543   4567999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      .++++++||++.++|.++..+....
T Consensus        93 ~~~~~~~lG~~~i~L~~l~~~~~~~  117 (124)
T cd08389          93 RMRKERLIGEKVVPLSQLNLEGETT  117 (124)
T ss_pred             CcccCceEEEEEEeccccCCCCCce
Confidence            9999999999999999996554433

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.56  E-value=3.3e-14  Score=113.23  Aligned_cols=97  Identities=22%  Similarity=0.399  Sum_probs=82.7

Q ss_pred             eeeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          204 FVGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      ..+.|.|+|++|++|+..+ .. .+||||++++.   .+..+|+++++++||.|||.|.|.+..   ....|.|+|||++
T Consensus        12 ~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~   91 (123)
T cd08390          12 EEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVD   91 (123)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECC
Confidence            3468999999999999887 34 88999999983   456789999999999999999999865   2457999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      ..+.+++||++.++|.++.......
T Consensus        92 ~~~~~~~iG~~~i~L~~l~~~~~~~  116 (123)
T cd08390          92 RFSRHCIIGHVLFPLKDLDLVKGGV  116 (123)
T ss_pred             cCCCCcEEEEEEEeccceecCCCce
Confidence            9889999999999999987655443

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.56  E-value=1.6e-14  Score=117.32  Aligned_cols=89  Identities=34%  Similarity=0.492  Sum_probs=77.5

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+.  .   .+.+|+++++++||.|+|+|.|.+..   ....|.|+|||++
T Consensus        14 ~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d   93 (136)
T cd08404          14 TNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD   93 (136)
T ss_pred             CCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence            46899999999999988866 89999999983  2   25689999999999999999999864   3456899999999


Q ss_pred             CCCCCceeEEEEEeCccc
Q 021294          276 TFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l  293 (314)
                      .++++++||++.+++...
T Consensus        94 ~~~~~~~iG~~~~~~~~~  111 (136)
T cd08404          94 RVTKNEVIGRLVLGPKAS  111 (136)
T ss_pred             CCCCCccEEEEEECCcCC
Confidence            999999999999999883

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.56  E-value=1.9e-14  Score=115.02  Aligned_cols=92  Identities=20%  Similarity=0.417  Sum_probs=81.9

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeec-CCCCCcccceeEEEecCC-----CCcEEEEEEEcCCCC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIK-SNLNPVWNESLMLSIPEN-----IPPLKVLVYDKDTFT  278 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~-~tlnP~w~e~~~f~v~~~-----~~~L~i~v~d~d~~~  278 (314)
                      .|.|+|++|++|+..+.. .+||||++.++. +..+|++.. .+.||.|||.|.|.+...     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            378999999999988765 899999999987 888999875 489999999999998764     578999999999988


Q ss_pred             CCceeEEEEEeCcccccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~~  298 (314)
                      .+++||++.++|.++..+..
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~  100 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGAS  100 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccC
Confidence            99999999999999987665

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.55  E-value=4.3e-14  Score=111.25  Aligned_cols=98  Identities=39%  Similarity=0.533  Sum_probs=83.1

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      |.|+|++|++|+..+.. .+||||++.+++ ...+|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            57899999999988765 789999999964 45799999999999999999999876 4578999999999999999999


Q ss_pred             EEEEeCccccccccccCcccc
Q 021294          285 DAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       285 ~~~v~l~~l~~~~~~~~~~~~  305 (314)
                      ++.+++.++..+.....+..+
T Consensus        81 ~~~~~l~~l~~~~~~~~~~~L  101 (115)
T cd04040          81 SAYIDLSDLEPEETTELTLPL  101 (115)
T ss_pred             EEEEEHHHcCCCCcEEEEEEC
Confidence            999999998876544444333

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.55  E-value=1.8e-14  Score=117.04  Aligned_cols=91  Identities=32%  Similarity=0.422  Sum_probs=78.7

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEE
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYD  273 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d  273 (314)
                      ...+.|.|+|++|++|+..+.. .+||||++.+.  .   ...+|+++++++||.|||.|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            4557899999999999988776 89999999984  2   356899999999999999999998642   3479999999


Q ss_pred             cCCCCCCceeEEEEEeCccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l  293 (314)
                      ++.++.+++||++.+++...
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCCCceeEEEEECCccC
Confidence            99999999999999999764

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.55  E-value=3.3e-14  Score=112.94  Aligned_cols=95  Identities=31%  Similarity=0.473  Sum_probs=78.7

Q ss_pred             EEEeeecCCCCCCC-CCCcEEEEEECCe-------EeeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC----C
Q 021294          211 NVVKGTNLAVRDVM-TSDPYVILALGHQ-------TVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----F  277 (314)
Q Consensus       211 ~v~~a~~L~~~d~~-~~dPyv~v~l~~~-------~~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~----~  277 (314)
                      ..++|++|+..+.. .+||||++.+...       ..+|+++++++||.|+|.|.|.+. +....|.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            34788999988866 8999999999554       389999999999999999999864 345679999999997    8


Q ss_pred             CCCceeEEEEEeCccccccccccCcccc
Q 021294          278 TTDDFMGDAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~~~~~~~~~~  305 (314)
                      +.+++||++.+++.+|..+.....+..+
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l  112 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPL  112 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence            8999999999999999866544444444

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.53  E-value=3.7e-14  Score=114.03  Aligned_cols=92  Identities=17%  Similarity=0.312  Sum_probs=76.5

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C--eEeeeeeecCCC-CCcccceeEEEecCC--CCcEEEEEE
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H--QTVKTRVIKSNL-NPVWNESLMLSIPEN--IPPLKVLVY  272 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~--~~~kT~~~~~tl-nP~w~e~~~f~v~~~--~~~L~i~v~  272 (314)
                      ..+.+.|+|.|++|++|+..... ..||||+|.+-   .  .+.+|+++++++ +|.|||.|.|.++.+  ...|.|+||
T Consensus        10 ~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~   89 (135)
T cd08692          10 QAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLY   89 (135)
T ss_pred             cCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEE
Confidence            44668899999999999986433 67999999982   2  467899999995 699999999999763  245778999


Q ss_pred             EcCCCCCCceeEEEEEeCccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l  293 (314)
                      |++..+++++||.+.+.....
T Consensus        90 d~~~~~~n~~IG~v~lG~~~~  110 (135)
T cd08692          90 SRSSVRRKHFLGQVWISSDSS  110 (135)
T ss_pred             eCCCCcCCceEEEEEECCccC
Confidence            999999999999999999764

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.53  E-value=1.2e-13  Score=114.07  Aligned_cols=98  Identities=31%  Similarity=0.413  Sum_probs=76.7

Q ss_pred             EEEEEeeec--CCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecCC---------CCcEEEEE
Q 021294          209 KVNVVKGTN--LAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN---------IPPLKVLV  271 (314)
Q Consensus       209 ~V~v~~a~~--L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~~---------~~~L~i~v  271 (314)
                      .++|..+++  |+..+.. ..||||++.+     +.++.+|+++++|+||+|||.|.|.+...         ...|.|+|
T Consensus         5 el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V   84 (155)
T cd08690           5 ELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEV   84 (155)
T ss_pred             EEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEE
Confidence            444555555  6666544 7899999987     34688999999999999999999998643         35699999


Q ss_pred             EEcCCC-CCCceeEEEEEeCccccccccccCccccc
Q 021294          272 YDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       272 ~d~d~~-~~dd~iG~~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      ||++.+ .+|++||++.++|..+........+..++
T Consensus        85 ~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~  120 (155)
T cd08690          85 YHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLM  120 (155)
T ss_pred             EeCCCcccCCCeeEEEEEEcccccccCcceEEEEhh
Confidence            999986 57999999999999997665544444444

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.52  E-value=1.3e-13  Score=110.40  Aligned_cols=89  Identities=30%  Similarity=0.517  Sum_probs=78.5

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd  281 (314)
                      .|+|+|++|++|+..+.. .+||||++.+..   ...+|+++++++||.|||.|.|.+.. ....|.|+|||++..+.++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            588999999999988876 889999998853   46799999999999999999999976 3567999999999988999


Q ss_pred             eeEEEEEeCccccc
Q 021294          282 FMGDAEIDIQPLVT  295 (314)
Q Consensus       282 ~iG~~~v~l~~l~~  295 (314)
                      +||++.++|.++..
T Consensus        82 ~iG~~~i~l~~~~~   95 (126)
T cd04043          82 LCGRASLKLDPKRF   95 (126)
T ss_pred             eEEEEEEecCHHHc
Confidence            99999999987643

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.52  E-value=1.2e-13  Score=110.78  Aligned_cols=90  Identities=28%  Similarity=0.375  Sum_probs=78.2

Q ss_pred             EEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCceeEEEEE
Q 021294          212 VVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFMGDAEI  288 (314)
Q Consensus       212 v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~iG~~~v  288 (314)
                      |++|++|+. ....+||||++.++....+|++++++.||.|+|.|.|.+..   ....|.|+|||++..+.+++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            678999988 33489999999999999999999999999999999999854   45789999999999999999999999


Q ss_pred             eCccccccccccCc
Q 021294          289 DIQPLVTAARACET  302 (314)
Q Consensus       289 ~l~~l~~~~~~~~~  302 (314)
                      +|.++..+.....+
T Consensus        81 ~l~~l~~~~~~~~~   94 (127)
T cd08373          81 SLQDLVSEGLLEVT   94 (127)
T ss_pred             EhhHcccCCceEEE
Confidence            99999865544433

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.51  E-value=1e-14  Score=134.19  Aligned_cols=91  Identities=36%  Similarity=0.572  Sum_probs=82.6

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF  277 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~  277 (314)
                      ..|.|.|.+|+||.++|.. .+||||++.+     +..+++|++++.++||+|||+|.|.+.+  ....|.|+|||||..
T Consensus       180 ~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT  259 (683)
T KOG0696|consen  180 DVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT  259 (683)
T ss_pred             ceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc
Confidence            5789999999999999987 9999999999     3456899999999999999999999865  557899999999999


Q ss_pred             CCCceeEEEEEeCcccccc
Q 021294          278 TTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~  296 (314)
                      +++||+|..++.+++|+..
T Consensus       260 sRNDFMGslSFgisEl~K~  278 (683)
T KOG0696|consen  260 SRNDFMGSLSFGISELQKA  278 (683)
T ss_pred             ccccccceecccHHHHhhc
Confidence            9999999999999999854

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.51  E-value=6.5e-14  Score=113.75  Aligned_cols=90  Identities=37%  Similarity=0.535  Sum_probs=78.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.  .   ...+|++++++.||.|||.|.|.+..   ....|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            346899999999999987766 89999999982  2   35689999999999999999999853   245799999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 021294          275 DTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l  293 (314)
                      +.++++++||++.+++...
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9999999999999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.51  E-value=1.4e-13  Score=111.03  Aligned_cols=91  Identities=36%  Similarity=0.545  Sum_probs=80.8

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTF  277 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~  277 (314)
                      +.|.|+|++|++|+..+.. ..||||++.+.     ....+|++++++.+|.|+|+|.|.+..  ....|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            7899999999999987766 78999999995     367899999999999999999999865  346799999999998


Q ss_pred             CCCceeEEEEEeCcccccc
Q 021294          278 TTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~  296 (314)
                      +.+++||.+.++|.++...
T Consensus        93 ~~~~~iG~~~~~l~~l~~~  111 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM  111 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC
Confidence            8999999999999999854

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.51  E-value=1.3e-13  Score=113.94  Aligned_cols=89  Identities=33%  Similarity=0.571  Sum_probs=78.1

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----------------------------eEeeeeeecCCCCCcc
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----------------------------QTVKTRVIKSNLNPVW  252 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----------------------------~~~kT~~~~~tlnP~w  252 (314)
                      ...+.|.|+|++|++|+..|.. .+||||++.+..                             ...+|+++++++||.|
T Consensus        25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W  104 (153)
T cd08676          25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW  104 (153)
T ss_pred             CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence            4568999999999999998876 899999999853                             2368999999999999


Q ss_pred             cceeEEEecC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccc
Q 021294          253 NESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       253 ~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~  295 (314)
                      ||.|.|.+.. ....|.|+|||++    +++||++.+++.++..
T Consensus       105 nE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~~  144 (153)
T cd08676         105 NETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLPS  144 (153)
T ss_pred             ccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhCC
Confidence            9999999865 4568999999987    8999999999999983

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.51  E-value=9.9e-14  Score=112.38  Aligned_cols=90  Identities=30%  Similarity=0.493  Sum_probs=77.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|+|.|.|.+..   ....|.|+|||+
T Consensus        12 ~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~   91 (134)
T cd08403          12 TAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDY   91 (134)
T ss_pred             CCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence            457899999999999998866 899999999832     35689999999999999999999854   224699999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 021294          275 DTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l  293 (314)
                      +.++.+++||++.+++...
T Consensus        92 ~~~~~~~~IG~~~l~~~~~  110 (134)
T cd08403          92 DRVGHNELIGVCRVGPNAD  110 (134)
T ss_pred             CCCCCCceeEEEEECCCCC
Confidence            9999999999999998733

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.51  E-value=1e-13  Score=112.90  Aligned_cols=91  Identities=22%  Similarity=0.388  Sum_probs=78.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+..+.. ..||||++.+..      .+.+|++++++.||+|||+|.|.+..   ....|.|+|||
T Consensus        13 ~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~   92 (138)
T cd08408          13 LTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYN   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEE
Confidence            457899999999999988776 789999999931      24689999999999999999999865   34579999999


Q ss_pred             cCCCCCCceeEEEEEeCcccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~  294 (314)
                      ++.++++++||++.+++....
T Consensus        93 ~~~~~~~~~iG~v~l~~~~~~  113 (138)
T cd08408          93 KRKMKRKEMIGWFSLGLNSSG  113 (138)
T ss_pred             CCCCCCCcEEEEEEECCcCCC
Confidence            999999999999999887553

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.51  E-value=1.3e-13  Score=111.90  Aligned_cols=89  Identities=27%  Similarity=0.511  Sum_probs=75.5

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.  .   .+.+|+++++++||.|||.|.|.+..   ....|.|+|||+
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            447899999999999988866 89999999972  2   35789999999999999999999854   234699999999


Q ss_pred             CCCCCCceeEEEEEeCcc
Q 021294          275 DTFTTDDFMGDAEIDIQP  292 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~  292 (314)
                      +..+++++||++.+....
T Consensus        92 d~~~~~~~iG~~~l~~~~  109 (135)
T cd08410          92 NVKSSNDFIGRIVIGQYS  109 (135)
T ss_pred             CCCCCCcEEEEEEEcCcc
Confidence            999999999998866543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.50  E-value=2.3e-13  Score=110.44  Aligned_cols=83  Identities=28%  Similarity=0.549  Sum_probs=73.6

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC----------CCCcEEEEEEEcC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----------NIPPLKVLVYDKD  275 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~----------~~~~L~i~v~d~d  275 (314)
                      .|.|.|++|++|+..+.. .+||||++.++.+..+|+++++++||.|||.|.|.+..          ....|.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            488999999999998876 89999999999999999999999999999999997421          1246899999999


Q ss_pred             CCCCCceeEEEEEe
Q 021294          276 TFTTDDFMGDAEID  289 (314)
Q Consensus       276 ~~~~dd~iG~~~v~  289 (314)
                      ..++|++||++.+.
T Consensus        82 ~~~~d~~iG~~~i~   95 (135)
T cd04017          82 SVGKDEFLGRSVAK   95 (135)
T ss_pred             CCCCCccceEEEee
Confidence            99999999999873

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.50  E-value=8.2e-14  Score=113.35  Aligned_cols=92  Identities=20%  Similarity=0.295  Sum_probs=78.2

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      .+.|.|.|++|++|+..+...+||||++.+..     .+.+|++++++.||.|||.|.|.++.   ....|.|+||+++.
T Consensus        14 ~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~   93 (137)
T cd08409          14 LNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGG   93 (137)
T ss_pred             CCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCC
Confidence            46899999999999988844899999999832     35689999999999999999999864   33679999999999


Q ss_pred             CCCCceeEEEEEeCcccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~  296 (314)
                      .+++++||++.+.......+
T Consensus        94 ~~~~~~lG~v~ig~~~~~~~  113 (137)
T cd08409          94 VRKSKLLGRVVLGPFMYARG  113 (137)
T ss_pred             CCCcceEEEEEECCcccCCC
Confidence            99999999999987655433

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.49  E-value=2.6e-13  Score=106.30  Aligned_cols=80  Identities=29%  Similarity=0.557  Sum_probs=68.6

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEc-------C
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDK-------D  275 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~-------d  275 (314)
                      |.|+|.+|++|+.    .+||||++.++.     ...+|+++++++||+|||.|.|.+.. ...|.+.|||+       |
T Consensus         1 L~V~V~~A~~L~~----~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~-s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFKQ----SANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG-SQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCCC----CCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC-CCEEEEEEEEccccccccc
Confidence            5799999999963    479999998842     45899999999999999999999964 67999999998       4


Q ss_pred             CCCCCceeEEEEEeCcc
Q 021294          276 TFTTDDFMGDAEIDIQP  292 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~  292 (314)
                      ..+.|+++|.+.+.|..
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            66889999888888763

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.48  E-value=4.6e-13  Score=107.24  Aligned_cols=89  Identities=25%  Similarity=0.456  Sum_probs=77.1

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEE
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGD  285 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~  285 (314)
                      .|.|+|++|..+.......+||||++.++++ ..+|+++++++||.|+|.|.|.+.. ...|.|+|||++..+.+++||+
T Consensus         3 ~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~-~~~l~~~V~d~~~~~~~~~iG~   81 (125)
T cd04021           3 QLQITVESAKLKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP-QSTLEFKVWSHHTLKADVLLGE   81 (125)
T ss_pred             eEEEEEEeeECCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC-CCEEEEEEEeCCCCCCCcEEEE
Confidence            5889999998444333338999999999877 8899999999999999999999864 4689999999999999999999


Q ss_pred             EEEeCcccccc
Q 021294          286 AEIDIQPLVTA  296 (314)
Q Consensus       286 ~~v~l~~l~~~  296 (314)
                      +.++|.++...
T Consensus        82 ~~i~l~~l~~~   92 (125)
T cd04021          82 ASLDLSDILKN   92 (125)
T ss_pred             EEEEHHHhHhh
Confidence            99999998754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.48  E-value=4.6e-13  Score=106.77  Aligned_cols=93  Identities=30%  Similarity=0.535  Sum_probs=79.2

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~  274 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+.     ....+|+++++++||.|+|.|.|. +..   ....|.|+|||+
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~   93 (123)
T cd04035          14 NSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE   93 (123)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence            46899999999999988766 88999999982     246899999999999999999996 332   246799999999


Q ss_pred             CCCCCCceeEEEEEeCcccccccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      +.. .+++||++.++|.+|..+..
T Consensus        94 ~~~-~~~~iG~~~i~l~~l~~~~~  116 (123)
T cd04035          94 DRF-GNDFLGETRIPLKKLKPNQT  116 (123)
T ss_pred             CCc-CCeeEEEEEEEcccCCCCcc
Confidence            988 88999999999999986543

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.46  E-value=1.5e-13  Score=110.89  Aligned_cols=87  Identities=33%  Similarity=0.492  Sum_probs=77.4

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDT  276 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~  276 (314)
                      +.|.|+|++|++|+..+.. ..||||++.+..     ...+|++++++.||.|||+|.|.+...   ...|.|+|||++.
T Consensus        14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~   93 (134)
T cd00276          14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDS   93 (134)
T ss_pred             CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCC
Confidence            6899999999999988755 899999999843     256899999999999999999998653   4789999999999


Q ss_pred             CCCCceeEEEEEeCcc
Q 021294          277 FTTDDFMGDAEIDIQP  292 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~  292 (314)
                      .+.+++||.+.+++.+
T Consensus        94 ~~~~~~lG~~~i~l~~  109 (134)
T cd00276          94 VGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCceeEEEEECCCC
Confidence            8899999999999999

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.45  E-value=9.3e-13  Score=106.91  Aligned_cols=89  Identities=25%  Similarity=0.469  Sum_probs=75.4

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEEC-------------CeEeeeeeecCCCCCcc-cceeEEEecCCCCcEEEEE
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALG-------------HQTVKTRVIKSNLNPVW-NESLMLSIPENIPPLKVLV  271 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-------------~~~~kT~~~~~tlnP~w-~e~~~f~v~~~~~~L~i~v  271 (314)
                      ++.|.+++|++|+ .+.. .+||||++.+.             .+..+|+++++++||.| ||.|.|.+.. ...|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~-~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP-TDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC-CCEEEEEE
Confidence            5789999999998 5554 89999999993             24689999999999999 9999999864 46899999


Q ss_pred             EEcCCCCC---CceeEEEEEeCccccccc
Q 021294          272 YDKDTFTT---DDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       272 ~d~d~~~~---dd~iG~~~v~l~~l~~~~  297 (314)
                      ||++..+.   +++||++.++|.+++.+.
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~  108 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERH  108 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccc
Confidence            99875443   799999999999998664

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.44  E-value=6.3e-13  Score=103.81  Aligned_cols=85  Identities=29%  Similarity=0.557  Sum_probs=72.3

Q ss_pred             EEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEEEcCCC
Q 021294          210 VNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVYDKDTF  277 (314)
Q Consensus       210 V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~d~d~~  277 (314)
                      +..++|++|+..+.. .+||||++.+..      ..++|+++++++||.|+ .|.|.+..     ....|.|+|||++..
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            456789999988876 899999999843      25899999999999999 68887532     256899999999999


Q ss_pred             CCCceeEEEEEeCccccc
Q 021294          278 TTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~  295 (314)
                      ++|++||++.+++.+|..
T Consensus        83 ~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          83 GKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCcEEEEEEEEHHHHhc
Confidence            999999999999999973

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.40  E-value=4.1e-12  Score=103.87  Aligned_cols=102  Identities=13%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC-C--
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-F--  277 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~-~--  277 (314)
                      ......|.|.|++|++|+.++    +|||.+.+++.. .||+++.++.||.|+|.|.|........|.|.||..+. .  
T Consensus         7 ~R~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~   82 (146)
T cd04013           7 RRTENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKK   82 (146)
T ss_pred             eEEEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccc
Confidence            345568999999999999865    799999999887 59999999999999999999876556779999986543 2  


Q ss_pred             -CCCceeEEEEEeCccccccccccCcccccC
Q 021294          278 -TTDDFMGDAEIDIQPLVTAARACETPISMS  307 (314)
Q Consensus       278 -~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~  307 (314)
                       ..+++||.+.|++..+..+.....|..+..
T Consensus        83 ~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~  113 (146)
T cd04013          83 KDKSQLIGTVNIPVTDVSSRQFVEKWYPVST  113 (146)
T ss_pred             ccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence             257899999999999987665555555543

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.40  E-value=3.2e-12  Score=102.30  Aligned_cols=90  Identities=31%  Similarity=0.593  Sum_probs=76.8

Q ss_pred             EEEEEEEeeecCCCCC---CCCCCcEEEEEE------CCeEeeeeeecCCC-CCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294          207 LIKVNVVKGTNLAVRD---VMTSDPYVILAL------GHQTVKTRVIKSNL-NPVWNESLMLSIPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d---~~~~dPyv~v~l------~~~~~kT~~~~~tl-nP~w~e~~~f~v~~-~~~~L~i~v~d~d  275 (314)
                      .|.|+|++|++|+..+   ....||||++.+      .....+|+++.++. ||.|+|+|.|.+.. ....|.|+|||++
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~   82 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED   82 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence            6899999999999877   338899999999      34568999988765 99999999999864 3357999999999


Q ss_pred             CCCCCceeEEEEEeCccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .. ++++||.+.++|.++..+.
T Consensus        83 ~~-~~~~iG~~~~~l~~l~~g~  103 (128)
T cd00275          83 SG-DDDFLGQACLPLDSLRQGY  103 (128)
T ss_pred             CC-CCcEeEEEEEEhHHhcCce
Confidence            88 8999999999999996554

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.35  E-value=1.8e-12  Score=140.25  Aligned_cols=103  Identities=20%  Similarity=0.354  Sum_probs=87.8

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCCCC
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDTFT  278 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~~~  278 (314)
                      ....|.|.|+|.+|.+|. .++..+||||++.++++ +.+|++++++.||+|||.|+|.+..  ...+|.|+|||+|.++
T Consensus      1976 ~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1976 QCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             hhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            356799999999999998 56669999999999976 7899999999999999999977654  4578999999999995


Q ss_pred             CCceeEEEEEeCccccccccccCccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      + +.+|.+.++|.++..+....++..+.
T Consensus      2055 k-d~~G~~~i~l~~vv~~~~~~~~~~L~ 2081 (2102)
T PLN03200       2055 K-SSLGKVTIQIDRVVMEGTYSGEYSLN 2081 (2102)
T ss_pred             C-CCCceEEEEHHHHhcCceeeeeeecC
Confidence            5 59999999999999766665555544

>PLN03008 Phospholipase D delta

Probab=99.35  E-value=2.8e-12  Score=128.25  Aligned_cols=83  Identities=29%  Similarity=0.520  Sum_probs=71.8

Q ss_pred             CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCcc
Q 021294          225 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       225 ~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      .+||||+|.++++ ..+|+++++++||+|||.|+|.+......|.|+|||+|.++ +++||++.|+|.+|..+.....|.
T Consensus        76 tSDPYV~I~Lg~~rv~RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~Wl  154 (868)
T PLN03008         76 TSDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISGWF  154 (868)
T ss_pred             CCCceEEEEECCcceeeEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEEEE
Confidence            5699999999876 46999999999999999999999876678999999999997 589999999999999887766665


Q ss_pred             cccCC
Q 021294          304 ISMSP  308 (314)
Q Consensus       304 ~~~~~  308 (314)
                      .++..
T Consensus       155 ~Ll~~  159 (868)
T PLN03008        155 PVLGA  159 (868)
T ss_pred             Ecccc
Confidence            55443

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.35  E-value=5.2e-12  Score=92.99  Aligned_cols=80  Identities=33%  Similarity=0.651  Sum_probs=70.7

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCce
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~  282 (314)
                      |.|+|.+|++|+..+.. ..+|||++.++.   ...+|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..+.+++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            78999999999987755 889999999966   67999999999999999999999643 45569999999999999999


Q ss_pred             eEEEE
Q 021294          283 MGDAE  287 (314)
Q Consensus       283 iG~~~  287 (314)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99873

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.33  E-value=7.8e-12  Score=97.94  Aligned_cols=82  Identities=27%  Similarity=0.399  Sum_probs=68.0

Q ss_pred             CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCc
Q 021294          225 TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       225 ~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      .+||||++.++++ ..+|++++++.||.|||.|.|.+.+ ....|.|+|||++.+ .+++||.+.++|.++.........
T Consensus        12 ~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~~~~   90 (111)
T cd04052          12 LLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSVGQQ   90 (111)
T ss_pred             CCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhccce
Confidence            6899999999875 5799999999999999999999876 356799999999998 899999999999999754443344


Q ss_pred             ccccC
Q 021294          303 PISMS  307 (314)
Q Consensus       303 ~~~~~  307 (314)
                      |..+.
T Consensus        91 w~~L~   95 (111)
T cd04052          91 WFPLS   95 (111)
T ss_pred             eEECC
Confidence            44443

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.33  E-value=1.6e-11  Score=96.79  Aligned_cols=83  Identities=24%  Similarity=0.490  Sum_probs=67.3

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCcee
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDFM  283 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~i  283 (314)
                      |.|+|++|++|+..  ..+||||++.++++ ..+|+++++ .||.|||+|.|.+..   ....|.|.+||.+....+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999876  67899999999875 479999988 999999999999876   234678888988877666777


Q ss_pred             EEEEEeCccc
Q 021294          284 GDAEIDIQPL  293 (314)
Q Consensus       284 G~~~v~l~~l  293 (314)
                      |.+.+.....
T Consensus        79 g~v~l~~~~~   88 (117)
T cd08383          79 GKVALSKLDL   88 (117)
T ss_pred             EEEEecCcCC
Confidence            7766554433

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.30  E-value=1.2e-11  Score=118.09  Aligned_cols=95  Identities=34%  Similarity=0.543  Sum_probs=83.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ....|.|+|++|.+|+..+.. .+||||++++.   ..+.+|++.++++||.|||+|.|.+..   ....|.+.|||.|+
T Consensus       165 ~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~dr  244 (421)
T KOG1028|consen  165 ELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDR  244 (421)
T ss_pred             cCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCC
Confidence            346899999999999999944 79999999993   367899999999999999999999754   45789999999999


Q ss_pred             CCCCceeEEEEEeCcccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      ++++++||++.++|..+-....
T Consensus       245 fsr~~~iGev~~~l~~~~~~~~  266 (421)
T KOG1028|consen  245 FSRHDFIGEVILPLGEVDLLST  266 (421)
T ss_pred             cccccEEEEEEecCcccccccc
Confidence            9999999999999887765554

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.26  E-value=8.5e-11  Score=88.61  Aligned_cols=92  Identities=39%  Similarity=0.742  Sum_probs=80.3

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECCe---EeeeeeecCCCCCcccceeEEEecCC-CCcEEEEEEEcCCCCCCce
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQ---TVKTRVIKSNLNPVWNESLMLSIPEN-IPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~---~~kT~~~~~tlnP~w~e~~~f~v~~~-~~~L~i~v~d~d~~~~dd~  282 (314)
                      |.|.|+.+++|...... ..+|||++.+...   ..+|+++.++.||.|+|.|.|.+... ...|.|+||+++..+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            67899999999887664 7899999999764   78999999999999999999998775 7889999999998878899


Q ss_pred             eEEEEEeCccccccccc
Q 021294          283 MGDAEIDIQPLVTAARA  299 (314)
Q Consensus       283 iG~~~v~l~~l~~~~~~  299 (314)
                      +|.+.+++.++..+...
T Consensus        82 ~G~~~~~l~~~~~~~~~   98 (101)
T smart00239       82 IGQVTIPLSDLLLGGRH   98 (101)
T ss_pred             eEEEEEEHHHcccCccc
Confidence            99999999998766543

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.20  E-value=1.2e-10  Score=93.56  Aligned_cols=91  Identities=30%  Similarity=0.398  Sum_probs=76.1

Q ss_pred             EEEEEEeeecCCCCCC--C---CCCcEEEEEECC---eEeeeeeecCCCC--CcccceeEEEecC---------------
Q 021294          208 IKVNVVKGTNLAVRDV--M---TSDPYVILALGH---QTVKTRVIKSNLN--PVWNESLMLSIPE---------------  262 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~--~---~~dPyv~v~l~~---~~~kT~~~~~tln--P~w~e~~~f~v~~---------------  262 (314)
                      |+|.|.++++++..+.  .   .+||||++.+..   .+++|.++.+++|  |.||++|.|++..               
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            7899999999765443  2   489999999953   5689999999999  9999999987643               


Q ss_pred             ---------CCCcEEEEEEEcCCCCCCceeEEEEEeCcccccccc
Q 021294          263 ---------NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       263 ---------~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                               ....|.|+|||.|.++.|++||++.++|..+..+..
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                     135689999999999999999999999999876553

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd00030 C2 C2 domain

Probab=99.16  E-value=3.8e-10  Score=84.57  Aligned_cols=87  Identities=44%  Similarity=0.820  Sum_probs=77.5

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCceeE
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      |.|.|++|++|+..... ..+|||.+.+.. ...+|.+...+.||.|++.|.|.+.. ....|.|+||+.+....+.++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            46889999999775444 789999999987 88899999999999999999999977 6678999999999888889999


Q ss_pred             EEEEeCcccc
Q 021294          285 DAEIDIQPLV  294 (314)
Q Consensus       285 ~~~v~l~~l~  294 (314)
                      .+.+++..+.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999987

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=7.7e-11  Score=113.19  Aligned_cols=97  Identities=32%  Similarity=0.573  Sum_probs=87.7

Q ss_pred             hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC-
Q 021294          199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT-  276 (314)
Q Consensus       199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~-  276 (314)
                      .|...|...++++|+.|.+|..+|.. .+||||.+.+++.+.+|+++-..+||+|+|.|+|++++....+++.|||.|. 
T Consensus       288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d  367 (1283)
T KOG1011|consen  288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND  367 (1283)
T ss_pred             ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence            35567889999999999999998876 9999999999999999999999999999999999999999999999999775 


Q ss_pred             ----------CCCCceeEEEEEeCccccc
Q 021294          277 ----------FTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       277 ----------~~~dd~iG~~~v~l~~l~~  295 (314)
                                ...|||+|++.+.+..|..
T Consensus       368 lksklrqkl~resddflgqtvievrtlsg  396 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSG  396 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEeccc
Confidence                      3568999999999888753

>PLN02223 phosphoinositide phospholipase C

Probab=99.06  E-value=9.2e-10  Score=106.19  Aligned_cols=96  Identities=25%  Similarity=0.490  Sum_probs=79.0

Q ss_pred             eeEEEEEEEeeecCCCC-----CCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294          205 VGLIKVNVVKGTNLAVR-----DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  272 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~-----d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~  272 (314)
                      ...|.|+|+.|.+++..     +.. ..||||+|.+.     ....+|.+..++.||.|||+|.|.+.. +...|+|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            35799999999987521     222 67999999993     245678888889999999999999865 4567899999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      |+|..+.++|+|++.+|+..|..|.++.
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~GyR~V  515 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEGIRAV  515 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCCceeE
Confidence            9999889999999999999999887665

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=7.3e-10  Score=106.01  Aligned_cols=90  Identities=36%  Similarity=0.550  Sum_probs=78.0

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ...|.|+|.|++|++|+.++.. ..||||++++-  .   .+.+|.+.++++||+|||.|.|.++.   ....|.|+|||
T Consensus       295 p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d  374 (421)
T KOG1028|consen  295 PTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWD  374 (421)
T ss_pred             cCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEE
Confidence            3458999999999999998887 88999999982  2   45689999999999999999999875   33578999999


Q ss_pred             cCCCCCCceeEEEEEeCcc
Q 021294          274 KDTFTTDDFMGDAEIDIQP  292 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~  292 (314)
                      ++.++.+++||.+.+....
T Consensus       375 ~d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  375 HDTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             cccccccceeeEEEecCCC
Confidence            9999999999998887765

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.95  E-value=1.5e-09  Score=110.85  Aligned_cols=99  Identities=37%  Similarity=0.561  Sum_probs=89.7

Q ss_pred             hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294          199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d  275 (314)
                      ..+++-+|.|.|.+..|.+|+..|.. .+||||++.+... .++|+++++++||.|||.+.+++.. ....+.|.|+|||
T Consensus      1033 ~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~Dwd 1112 (1227)
T COG5038        1033 VEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVNDWD 1112 (1227)
T ss_pred             ceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEeecc
Confidence            46788899999999999999999988 6999999999665 7899999999999999999999975 5678999999999


Q ss_pred             CCCCCceeEEEEEeCccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .-.+++.||.+.++|..|..+.
T Consensus      1113 ~~~knd~lg~~~idL~~l~~~~ 1134 (1227)
T COG5038        1113 SGEKNDLLGTAEIDLSKLEPGG 1134 (1227)
T ss_pred             cCCCccccccccccHhhcCcCC
Confidence            9999999999999999887543

>PLN02952 phosphoinositide phospholipase C

Probab=98.91  E-value=8e-09  Score=101.66  Aligned_cols=95  Identities=25%  Similarity=0.424  Sum_probs=78.6

Q ss_pred             eEEEEEEEeeecCCCC------CCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294          206 GLIKVNVVKGTNLAVR------DVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  272 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~------d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~  272 (314)
                      ..|.|+|+.|.+++..      +.. ..||||+|.+-     ..+.+|+++.++.||.|+|+|.|.+.. +...|.|.||
T Consensus       470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V~  549 (599)
T PLN02952        470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEVR  549 (599)
T ss_pred             ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEEE
Confidence            5799999999887531      111 35999999882     456799999999999999999998765 4467899999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      |+|..+.++++|++.++|..|..|.+..
T Consensus       550 D~D~~~~ddfiGq~~lPv~~Lr~GyR~V  577 (599)
T PLN02952        550 EYDMSEKDDFGGQTCLPVSELRPGIRSV  577 (599)
T ss_pred             ecCCCCCCCeEEEEEcchhHhcCCceeE
Confidence            9999889999999999999999888643

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=98.90  E-value=5.7e-09  Score=106.70  Aligned_cols=98  Identities=30%  Similarity=0.551  Sum_probs=86.8

Q ss_pred             ceeeeeEEEEEEEeeecCCCCCCC---CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294          201 MVEFVGLIKVNVVKGTNLAVRDVM---TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT  276 (314)
Q Consensus       201 ~~e~~g~L~V~v~~a~~L~~~d~~---~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~  276 (314)
                      ....+|+|.|+|.+|++|...+..   ..|||+.+.+.. ...+|++.++++||+|||+|++.+..-.++|.|+|||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            567889999999999999887732   789999999843 4569999999999999999999998878899999999999


Q ss_pred             CCCCceeEEEEEeCcccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      ..+|+.+|.+.++|..|.....
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~  532 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPV  532 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccc
Confidence            9999999999999998876543

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.89  E-value=7.1e-09  Score=101.85  Aligned_cols=95  Identities=22%  Similarity=0.407  Sum_probs=78.9

Q ss_pred             eEEEEEEEeeecCCCC------CCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294          206 GLIKVNVVKGTNLAVR------DVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  272 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~------d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~  272 (314)
                      ..|.|+|+.+.+++..      +.. ..||||+|.+     +....+|++..++.||.|+|+|.|.+.. +...|+|+|+
T Consensus       469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V~  548 (598)
T PLN02230        469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEVH  548 (598)
T ss_pred             cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEEE
Confidence            5799999999987421      112 4699999998     2345688888889999999999998754 5577999999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      |+|..+.++|+|++.+|+..|..|.++.
T Consensus       549 d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V  576 (598)
T PLN02230        549 EHDINEKDDFGGQTCLPVSEIRQGIHAV  576 (598)
T ss_pred             ECCCCCCCCEEEEEEcchHHhhCccceE
Confidence            9999889999999999999999988765

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.86  E-value=1.4e-08  Score=99.67  Aligned_cols=95  Identities=21%  Similarity=0.357  Sum_probs=78.3

Q ss_pred             eEEEEEEEeeecCC--C--CC--CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEE
Q 021294          206 GLIKVNVVKGTNLA--V--RD--VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVY  272 (314)
Q Consensus       206 g~L~V~v~~a~~L~--~--~d--~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~  272 (314)
                      ..|.|+|+.+.+++  .  ..  .. ..||||+|.+.     ..+.+|+++.++.||.|+|.|.|.+.. +...|+|.|+
T Consensus       452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~  531 (581)
T PLN02222        452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVH  531 (581)
T ss_pred             ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEE
Confidence            56899999998753  1  11  12 56999999983     356799999999999999999998754 4577999999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      |+|..+.++|+|++.+++..|..|.++.
T Consensus       532 d~D~~~~ddfigq~~lPv~~Lr~GyR~V  559 (581)
T PLN02222        532 EYDMSEKDDFGGQTCLPVWELSQGIRAF  559 (581)
T ss_pred             ECCCCCCCcEEEEEEcchhhhhCccceE
Confidence            9998889999999999999999988765

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.85  E-value=3.9e-09  Score=102.68  Aligned_cols=96  Identities=23%  Similarity=0.379  Sum_probs=84.8

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCcee
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFM  283 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~i  283 (314)
                      ..|.|+|.+|+||+..+.. ..||||.|.++. ...||.++.+++.|.|.|.|+|.++..-..|.|-|||+| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            3589999999999999887 899999999975 567999999999999999999999987788999999999 9999999


Q ss_pred             EEEEEeCccccccccccCc
Q 021294          284 GDAEIDIQPLVTAARACET  302 (314)
Q Consensus       284 G~~~v~l~~l~~~~~~~~~  302 (314)
                      |.+.+.=++|......+.|
T Consensus        84 GKvai~re~l~~~~~~d~W  102 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGKDTW  102 (800)
T ss_pred             ceeeeeHHHHhhCCCCccc
Confidence            9999998888765533333

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.83  E-value=7.5e-09  Score=102.03  Aligned_cols=95  Identities=23%  Similarity=0.443  Sum_probs=78.8

Q ss_pred             EEEEEEEeeecCCC-CC---CC-CCCcEEEEEEC-----CeEeeee-eecCCCCCcccceeEEEecC-CCCcEEEEEEEc
Q 021294          207 LIKVNVVKGTNLAV-RD---VM-TSDPYVILALG-----HQTVKTR-VIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDK  274 (314)
Q Consensus       207 ~L~V~v~~a~~L~~-~d---~~-~~dPyv~v~l~-----~~~~kT~-~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~  274 (314)
                      .|.|.|+.+.+++. .+   +. ..||||.|.+-     ....+|+ +..++.||.|+|+|.|.+.. +...|+|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            69999999997644 22   22 67999999883     3457899 55568999999999999865 557799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccccccC
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAARACE  301 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~~~~  301 (314)
                      |..++|||+|++.+|+..|..|.++..
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyRhVp  723 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYRHVP  723 (746)
T ss_pred             CCCCcccccceeeccHHHhhCceeeee
Confidence            999999999999999999999987753

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.82  E-value=6.3e-09  Score=99.27  Aligned_cols=90  Identities=31%  Similarity=0.592  Sum_probs=82.7

Q ss_pred             eEEEEEEEeeecCCCCCCC--CCCcEEEEEECCeEeeeeeecCCCCCccc-ceeEEEecC---CCCcEEEEEEEcCCCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM--TSDPYVILALGHQTVKTRVIKSNLNPVWN-ESLMLSIPE---NIPPLKVLVYDKDTFTT  279 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~~~~kT~~~~~tlnP~w~-e~~~f~v~~---~~~~L~i~v~d~d~~~~  279 (314)
                      |.|-|.|..|++||.+|..  ..|.||.+.+++.+++|.+..+++||.|| +.|.|++.+   +.++|+|.+.|+|.++.
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            6788999999999999876  78999999999999999999999999999 668899865   56899999999999999


Q ss_pred             CceeEEEEEeCccccc
Q 021294          280 DDFMGDAEIDIQPLVT  295 (314)
Q Consensus       280 dd~iG~~~v~l~~l~~  295 (314)
                      +|-||.+.++|.+|..
T Consensus        83 ndaigkv~i~idpl~~   98 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCL   98 (1169)
T ss_pred             ccccceeeeccChHHH
Confidence            9999999999998763

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.78  E-value=2.8e-08  Score=98.04  Aligned_cols=93  Identities=24%  Similarity=0.438  Sum_probs=78.4

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeE-eeeeeecCCCCCccc-ceeEEEecC-CCCcEEEEEEEcCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQT-VKTRVIKSNLNPVWN-ESLMLSIPE-NIPPLKVLVYDKDTF  277 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~-~kT~~~~~tlnP~w~-e~~~f~v~~-~~~~L~i~v~d~d~~  277 (314)
                      -.|.|.|+.|++|+..+.+...|||.|.+-     ..+ ++|.+..+++||+|+ |.|+|.+.+ +-..|+|.|+|.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            468899999999997776677899999982     233 455667778999999 999999976 557799999999999


Q ss_pred             CCCceeEEEEEeCcccccccc
Q 021294          278 TTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      +...|||++.+|+..|..|.+
T Consensus      1145 s~~~FiaqA~yPv~~ik~GfR 1165 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSGFR 1165 (1267)
T ss_pred             CCcceeeeeecchhhhhccce
Confidence            999999999999998887654

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.78  E-value=2.6e-09  Score=104.03  Aligned_cols=90  Identities=29%  Similarity=0.510  Sum_probs=78.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-------eEeeeeeecCCCCCcccceeEEEecC-----CCCcEEEEEE
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-------QTVKTRVIKSNLNPVWNESLMLSIPE-----NIPPLKVLVY  272 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-------~~~kT~~~~~tlnP~w~e~~~f~v~~-----~~~~L~i~v~  272 (314)
                      ..|.|.|+-|+++.+.|.+ .+||||+|.++.       ..++|+|+.+++||+|+|.|.|.++.     ....|.|+|.
T Consensus       947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred             cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence            3566777888998888877 899999999964       34699999999999999999999965     2467999999


Q ss_pred             EcCCCCCCceeEEEEEeCccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~  295 (314)
                      |+|-++.+||-|++.+.|+++..
T Consensus      1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             ccceecccccchHHHHhhCCCCC
Confidence            99999999999999999998864

>PLN02228 Phosphoinositide phospholipase C

Probab=98.76  E-value=5e-08  Score=95.54  Aligned_cols=95  Identities=21%  Similarity=0.377  Sum_probs=78.6

Q ss_pred             eEEEEEEEeeecCCC---CC---CC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcc-cceeEEEecC-CCCcEEEEE
Q 021294          206 GLIKVNVVKGTNLAV---RD---VM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVW-NESLMLSIPE-NIPPLKVLV  271 (314)
Q Consensus       206 g~L~V~v~~a~~L~~---~d---~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w-~e~~~f~v~~-~~~~L~i~v  271 (314)
                      ..|.|+|+.|.+|+.   .+   .. ..||||+|.+     +....+|+++.++.||.| +|.|.|.+.. +...|+|.|
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~V  510 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFKV  510 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEEE
Confidence            469999999998732   11   12 4799999998     234579999988899999 9999999754 456799999


Q ss_pred             EEcCCCCCCceeEEEEEeCcccccccccc
Q 021294          272 YDKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       272 ~d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      +|+|..+.++++|++.+++..|..|.++.
T Consensus       511 ~D~d~~~~d~figq~~lPv~~Lr~GYR~V  539 (567)
T PLN02228        511 QDYDNDTQNDFAGQTCLPLPELKSGVRAV  539 (567)
T ss_pred             EeCCCCCCCCEEEEEEcchhHhhCCeeEE
Confidence            99998889999999999999999988765

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=7e-08  Score=73.52  Aligned_cols=85  Identities=15%  Similarity=0.279  Sum_probs=69.2

Q ss_pred             EEEEEEeeecCCCCC---CC-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294          208 IKVNVVKGTNLAVRD---VM-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       208 L~V~v~~a~~L~~~d---~~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~  282 (314)
                      |.|+|..++++.-.+   +. .++|||.+.++.. +.+|+..   .||.|||.|.|.+. ....+.|.|||+.. ...-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd-k~nEiel~VyDk~~-~~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE-KNNEEEVIVYDKGG-DQPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec-CCcEEEEEEEeCCC-Ceecc
Confidence            578899999997655   34 7899999999876 7888774   89999999999994 57889999999854 33457


Q ss_pred             eEEEEEeCccccccc
Q 021294          283 MGDAEIDIQPLVTAA  297 (314)
Q Consensus       283 iG~~~v~l~~l~~~~  297 (314)
                      ||..-+.|++|...-
T Consensus        76 i~llW~~~sdi~Ee~   90 (109)
T cd08689          76 VGLLWLRLSDIAEEI   90 (109)
T ss_pred             eeeehhhHHHHHHHH
Confidence            899999999887543

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02270 phospholipase D alpha

Probab=98.66  E-value=1.4e-07  Score=94.91  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=84.9

Q ss_pred             eeeEEEEEEEeeecCCCCC-----------------C--CCCCcEEEEEECCe-EeeeeeecC-CCCCcccceeEEEecC
Q 021294          204 FVGLIKVNVVKGTNLAVRD-----------------V--MTSDPYVILALGHQ-TVKTRVIKS-NLNPVWNESLMLSIPE  262 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d-----------------~--~~~dPyv~v~l~~~-~~kT~~~~~-tlnP~w~e~~~f~v~~  262 (314)
                      .-|.|.|+|.+|++|+..+                 .  ..+||||.|.+++. ..+|+++.+ ..||.|+|.|++.+..
T Consensus         6 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah   85 (808)
T PLN02270          6 LHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH   85 (808)
T ss_pred             eecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc
Confidence            4478999999999998531                 1  15699999999775 569999987 4699999999999977


Q ss_pred             CCCcEEEEEEEcCCCCCCceeEEEEEeCccccccccccCcccccC
Q 021294          263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMS  307 (314)
Q Consensus       263 ~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~  307 (314)
                      ....+.|.|.|.+.++. .+||.+.+++.+|+.+.....|..+++
T Consensus        86 ~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~  129 (808)
T PLN02270         86 MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILD  129 (808)
T ss_pred             CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccC
Confidence            77899999999998876 499999999999998877665655544

>PLN02964 phosphatidylserine decarboxylase

Probab=98.19  E-value=2.7e-06  Score=84.78  Aligned_cols=90  Identities=22%  Similarity=0.431  Sum_probs=75.8

Q ss_pred             ceeeeeEEEEEEEeeecCCCCCCCCCCc-EEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCC
Q 021294          201 MVEFVGLIKVNVVKGTNLAVRDVMTSDP-YVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFT  278 (314)
Q Consensus       201 ~~e~~g~L~V~v~~a~~L~~~d~~~~dP-yv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~  278 (314)
                      ...+.|++.+++++|.    +++  .|+ |+.+++|.++++|.+.++|+||+||+...|.+.+ +....+|.|||++.++
T Consensus        49 ~~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MKF--KDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccccCeEEEEeehhh----hcc--CCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            3468899999999986    332  477 4667889999999999999999999999999866 4455799999999999


Q ss_pred             CCceeEEEEEeCcccccc
Q 021294          279 TDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~  296 (314)
                      .++++|.++++|.++...
T Consensus       123 ~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             HHHhhhheeecHhhccHH
Confidence            999999999998877643

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.13  E-value=1.9e-06  Score=87.26  Aligned_cols=88  Identities=33%  Similarity=0.456  Sum_probs=77.1

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE--eeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT--VKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~--~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~d  280 (314)
                      ...+.|++++|.+|...|.. ..|||+.+.+|++.  -++..+.+++||+|.+.|.+...- ....|+++|||+|..+.|
T Consensus       612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~~d  691 (1105)
T KOG1326|consen  612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEAQD  691 (1105)
T ss_pred             eeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccccc
Confidence            35677999999999998877 89999999999877  467788999999999999887643 456799999999999999


Q ss_pred             ceeEEEEEeCcc
Q 021294          281 DFMGDAEIDIQP  292 (314)
Q Consensus       281 d~iG~~~v~l~~  292 (314)
                      +.||++.++|+.
T Consensus       692 ~~iget~iDLEn  703 (1105)
T KOG1326|consen  692 EKIGETTIDLEN  703 (1105)
T ss_pred             chhhceehhhhh
Confidence            999999999975

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=97.97  E-value=7.8e-06  Score=80.20  Aligned_cols=92  Identities=17%  Similarity=0.269  Sum_probs=68.2

Q ss_pred             EeeecCCCCCCCCCCcEEEEEECCe----EeeeeeecCCCCCcccceeEEEecCC----------------CCcEEEEEE
Q 021294          213 VKGTNLAVRDVMTSDPYVILALGHQ----TVKTRVIKSNLNPVWNESLMLSIPEN----------------IPPLKVLVY  272 (314)
Q Consensus       213 ~~a~~L~~~d~~~~dPyv~v~l~~~----~~kT~~~~~tlnP~w~e~~~f~v~~~----------------~~~L~i~v~  272 (314)
                      +.++++.+.....+|||+.+.....    ..+|++.+.+.+|.|+|.|.|.+...                ...|++.+|
T Consensus       138 L~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW  217 (800)
T KOG2059|consen  138 LKTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLW  217 (800)
T ss_pred             hhhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeec
Confidence            3344444444447899999998553    35999999999999999999987543                235889999


Q ss_pred             E-cCCCCCCceeEEEEEeCccccccccccCccc
Q 021294          273 D-KDTFTTDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       273 d-~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      + ++....++|+|++.+++..+........|..
T Consensus       218 ~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~  250 (800)
T KOG2059|consen  218 NDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYY  250 (800)
T ss_pred             cchhhhhhhhhceeEEeehhhhhhccCccceEE
Confidence            8 5666679999999999998875444444433

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.78  E-value=2.1e-05  Score=80.92  Aligned_cols=94  Identities=24%  Similarity=0.320  Sum_probs=77.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~  274 (314)
                      .|.|+|.|.-+++|+...-+ ..||||+.++-     ..+.+|++++++.||.|||.+...-.+    ....|++.||..
T Consensus      1523 ~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~ 1602 (1639)
T KOG0905|consen 1523 NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSN 1602 (1639)
T ss_pred             CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecc
Confidence            37999999999999655444 88999999993     245799999999999999999877322    347899999999


Q ss_pred             CCCCCCceeEEEEEeCcccccccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      +.+..+.++|.+.++|.++-...+
T Consensus      1603 ~~~~en~~lg~v~i~L~~~~l~kE 1626 (1639)
T KOG0905|consen 1603 GGLLENVFLGGVNIPLLKVDLLKE 1626 (1639)
T ss_pred             cceeeeeeeeeeecchhhcchhhh
Confidence            999999999999999998765443

>PLN02352 phospholipase D epsilon

Probab=97.69  E-value=0.00015  Score=73.30  Aligned_cols=95  Identities=17%  Similarity=0.338  Sum_probs=69.8

Q ss_pred             eeeEEEEEEEeeecCCCC----CC-C-CCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCC-CcEEEEEEEcC
Q 021294          204 FVGLIKVNVVKGTNLAVR----DV-M-TSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENI-PPLKVLVYDKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~----d~-~-~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~-~~L~i~v~d~d  275 (314)
                      .-|.|.++|.+|+-+...    .. . ..+|||.|.+++.+ .+|   .+..||.|+|.|++.+.... ..+.|.|.|  
T Consensus         8 lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--   82 (758)
T PLN02352          8 FHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--   82 (758)
T ss_pred             cccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--
Confidence            347899999999732111    11 1 23999999997654 577   55569999999999986655 579999988  


Q ss_pred             CCCCCceeEEEEEeCcccccccc-ccCccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAAR-ACETPISM  306 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~-~~~~~~~~  306 (314)
                         ...+||.+.+++.+|+.+.. ...|..++
T Consensus        83 ---~~~~ig~~~~p~~~~~~g~~~~~~~~~~~  111 (758)
T PLN02352         83 ---KCSILGRFHIQAHQIVTEASFINGFFPLI  111 (758)
T ss_pred             ---CCeEEEEEEEEHHHhhCCCcccceEEEcc
Confidence               25789999999999998866 44444443

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=7.3e-05  Score=67.64  Aligned_cols=88  Identities=26%  Similarity=0.302  Sum_probs=72.2

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~  274 (314)
                      ...-+.|+++++..|...|.. .+||||.+.+..     -+.+|.+.+.+++|+|++.|.|.+.+.   ...+.|.|||.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            335688899999999888887 899999999842     356899999999999999999998663   35688999999


Q ss_pred             CCCCCCceeEEEEEeCc
Q 021294          275 DTFTTDDFMGDAEIDIQ  291 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~  291 (314)
                      +.....+++|-....+-
T Consensus       311 ~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             CCCcCccCCCccccccc
Confidence            98878899988665544

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=97.62  E-value=1.2e-05  Score=79.02  Aligned_cols=90  Identities=26%  Similarity=0.527  Sum_probs=69.6

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEECC-------------e------------------EeeeeeecCCCCCcccce
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILALGH-------------Q------------------TVKTRVIKSNLNPVWNES  255 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-------------~------------------~~kT~~~~~tlnP~w~e~  255 (314)
                      +.|.+.+|.+|..++.. .+|||+...+-.             |                  ..-|.+.++|+||.|+|.
T Consensus       116 l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~Ek  195 (1103)
T KOG1328|consen  116 LNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEK  195 (1103)
T ss_pred             HHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhh
Confidence            45556677888887776 789998876510             0                  124788899999999999


Q ss_pred             eEEEecC-CCCcEEEEEEEcCCC---------------------------------CC---CceeEEEEEeCccccccc
Q 021294          256 LMLSIPE-NIPPLKVLVYDKDTF---------------------------------TT---DDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       256 ~~f~v~~-~~~~L~i~v~d~d~~---------------------------------~~---dd~iG~~~v~l~~l~~~~  297 (314)
                      |.|.+.+ ..+.+.+-+||+|.-                                 +.   |||+|.+.++|.++...+
T Consensus       196 F~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~G  274 (1103)
T KOG1328|consen  196 FQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPDG  274 (1103)
T ss_pred             eeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcch
Confidence            9999977 677899999998741                                 23   789999999999997543

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.45  E-value=0.0004  Score=67.87  Aligned_cols=93  Identities=18%  Similarity=0.240  Sum_probs=75.6

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEEC-------CeEeeeeeecCCCCCcccceeEEEecCC----CCcEEEEEEEc
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILALG-------HQTVKTRVIKSNLNPVWNESLMLSIPEN----IPPLKVLVYDK  274 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-------~~~~kT~~~~~tlnP~w~e~~~f~v~~~----~~~L~i~v~d~  274 (314)
                      ..++|.|+.|.+|.....+...|||.|.+-       +.++.|+...++-.|.|||+|+|-+.++    ...|.|.|.|+
T Consensus      1125 hkvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDY 1204 (1283)
T KOG1011|consen 1125 HKVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDY 1204 (1283)
T ss_pred             ceEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhh
Confidence            367888999999987666677899999882       2456788888999999999999988552    34588999898


Q ss_pred             CCCCCCceeEEEEEeCcccccccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      .-...|..+|.+.+.|.++...+.
T Consensus      1205 CFAReDRvvGl~VlqL~~va~kGS 1228 (1283)
T KOG1011|consen 1205 CFAREDRVVGLAVLQLRSVADKGS 1228 (1283)
T ss_pred             eeecccceeeeeeeehhhHhhcCc
Confidence            877778899999999999976544

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.39  E-value=0.00071  Score=53.50  Aligned_cols=79  Identities=16%  Similarity=0.308  Sum_probs=60.0

Q ss_pred             CCCcEEEEEE----CCeEeeeeeecCCCCCcccceeEEEec-----C-----------CCCcEEEEEEEcCCC-------
Q 021294          225 TSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIP-----E-----------NIPPLKVLVYDKDTF-------  277 (314)
Q Consensus       225 ~~dPyv~v~l----~~~~~kT~~~~~tlnP~w~e~~~f~v~-----~-----------~~~~L~i~v~d~d~~-------  277 (314)
                      ..++||++.+    ++...+|+++-++..|.|+..+.|.++     +           +...+.|+||....-       
T Consensus        32 GVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~  111 (143)
T cd08683          32 GVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK  111 (143)
T ss_pred             ccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence            3589999986    456788999999999999999999765     1           124688999986532       


Q ss_pred             ---CCCceeEEEEEeCccccccccccCcc
Q 021294          278 ---TTDDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       278 ---~~dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                         ..|-+||.+.+|+.+|+........|
T Consensus       112 ~~~~~DilLG~v~IPl~~Ll~~rsGitGW  140 (143)
T cd08683         112 IETSGDILLGTVKIPLRDLLTKRSGITGW  140 (143)
T ss_pred             cCcCCcEEEEEEEeeHHHHhhcccCcccc
Confidence               34558999999999998665544444

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.37  E-value=9.3e-05  Score=68.04  Aligned_cols=108  Identities=20%  Similarity=0.288  Sum_probs=84.9

Q ss_pred             cceeeeeEEEEEEEeeecCCCCCCC--CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE
Q 021294          200 AMVEFVGLIKVNVVKGTNLAVRDVM--TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY  272 (314)
Q Consensus       200 ~~~e~~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~  272 (314)
                      +.+...|.+.|.|++|++|..+.-.  .++|||+|++-.     .+.+|+...+++.|.+-+.+.|.-.+....|.+.||
T Consensus       263 ~~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~  342 (405)
T KOG2060|consen  263 ALMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVW  342 (405)
T ss_pred             hhhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEe
Confidence            3455678999999999999765433  789999999932     346899999999999999999988888889999999


Q ss_pred             E-cCCCCCCceeEEEEEeCccccccc-cccCcccccC
Q 021294          273 D-KDTFTTDDFMGDAEIDIQPLVTAA-RACETPISMS  307 (314)
Q Consensus       273 d-~d~~~~dd~iG~~~v~l~~l~~~~-~~~~~~~~~~  307 (314)
                      . +..+..+.|+|.+.+-+.+|-... ....|...++
T Consensus       343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfg  379 (405)
T KOG2060|consen  343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFG  379 (405)
T ss_pred             ccccccchHHHhhHHHHHhhhhccccccceeeeeccC
Confidence            4 677778889999999888886555 3444444443

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.31  E-value=5.3e-05  Score=77.02  Aligned_cols=89  Identities=24%  Similarity=0.377  Sum_probs=73.5

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEe---c-------CCCCcEEEEEEEc
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI---P-------ENIPPLKVLVYDK  274 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v---~-------~~~~~L~i~v~d~  274 (314)
                      -.+++.|.+|+.|...+.. .+|||..+.+-++...|.++.+++||.|++...|.-   .       .....+.|+|||.
T Consensus       206 ~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~  285 (1105)
T KOG1326|consen  206 SPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDL  285 (1105)
T ss_pred             hhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehh
Confidence            4566777889999888776 899999999999999999999999999999999852   1       1234578999999


Q ss_pred             CCCCCCceeEEEEEeCcccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~  294 (314)
                      +..+.++|+|.......-+.
T Consensus       286 dr~g~~ef~gr~~~~p~V~~  305 (1105)
T KOG1326|consen  286 DRSGINEFKGRKKQRPYVMV  305 (1105)
T ss_pred             hhhchHHhhcccccceEEEe
Confidence            99999999999876655444

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.13  E-value=0.0011  Score=64.14  Aligned_cols=84  Identities=26%  Similarity=0.501  Sum_probs=67.9

Q ss_pred             EEEeeecCCCCCCC-CCCcEEEEEEC--C----eEeeeeeecCCCCCcccceeEEEec-----CCCCcEEEEEEEcCCCC
Q 021294          211 NVVKGTNLAVRDVM-TSDPYVILALG--H----QTVKTRVIKSNLNPVWNESLMLSIP-----ENIPPLKVLVYDKDTFT  278 (314)
Q Consensus       211 ~v~~a~~L~~~d~~-~~dPyv~v~l~--~----~~~kT~~~~~tlnP~w~e~~~f~v~-----~~~~~L~i~v~d~d~~~  278 (314)
                      -..++++|..+|++ .+|||..+.-.  .    ...+|.+.+++++|.|.+ |.+...     +....+++++||++..+
T Consensus       141 ~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~  219 (529)
T KOG1327|consen  141 FSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNG  219 (529)
T ss_pred             eeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCC
Confidence            34567888888888 99999887652  2    346899999999999998 555432     24578999999999999


Q ss_pred             CCceeEEEEEeCccccc
Q 021294          279 TDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~  295 (314)
                      ++++||++..++..+..
T Consensus       220 ~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  220 KHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CcCceeEecccHHHhcc
Confidence            99999999999998864

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.94  E-value=0.0019  Score=47.69  Aligned_cols=86  Identities=15%  Similarity=0.227  Sum_probs=61.2

Q ss_pred             EEEEEeeecCCCCCCCCCCc--EEEE--EECC-eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCC
Q 021294          209 KVNVVKGTNLAVRDVMTSDP--YVIL--ALGH-QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       209 ~V~v~~a~~L~~~d~~~~dP--yv~v--~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~d  280 (314)
                      -|+++.+++|.......-+|  |++-  ++.+ ...+|.+.+...||+|.|+|.|.+..   ..-.|-|.|+.  ...+.
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            36777888875433332333  5443  2333 45789999999999999999998743   34557788887  55677


Q ss_pred             ceeEEEEEeCcccccc
Q 021294          281 DFMGDAEIDIQPLVTA  296 (314)
Q Consensus       281 d~iG~~~v~l~~l~~~  296 (314)
                      +.||.+.+.++++-..
T Consensus        80 e~iG~~sL~l~s~gee   95 (103)
T cd08684          80 RTIGECSLSLRTLSTQ   95 (103)
T ss_pred             ceeeEEEeecccCCHH
Confidence            8999999999988643

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.92  E-value=0.00017  Score=65.38  Aligned_cols=89  Identities=25%  Similarity=0.464  Sum_probs=73.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEec--C--CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIP--E--NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~--~--~~~~L~i~v~d~d  275 (314)
                      ..+.++|.+|.+|..+++. ..|||+++.+..     .+.+|++..+++||.|+|......-  .  ....+++.|.|.+
T Consensus        93 ~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~  172 (362)
T KOG1013|consen   93 RMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDND  172 (362)
T ss_pred             hhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCc
Confidence            4678899999999999887 899999998843     3478899999999999998776532  2  2345778899999


Q ss_pred             CCCCCceeEEEEEeCcccc
Q 021294          276 TFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~  294 (314)
                      .+..++++|+..|.+..|.
T Consensus       173 ~~~~~~sqGq~r~~lkKl~  191 (362)
T KOG1013|consen  173 KKTHNESQGQSRVSLKKLK  191 (362)
T ss_pred             ccccccCcccchhhhhccC
Confidence            9999999999998887664

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.05  E-value=0.0043  Score=57.96  Aligned_cols=102  Identities=25%  Similarity=0.380  Sum_probs=75.4

Q ss_pred             EEEEEEEeeecCCCCCC-CCCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecCC------------CCcEE
Q 021294          207 LIKVNVVKGTNLAVRDV-MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN------------IPPLK  268 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~-~~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~~------------~~~L~  268 (314)
                      .|.+.|+++.+++.-.- .-.|-||.+.+     ..++.+|.+++.+.+|.|+|.|.+.+...            ..-++
T Consensus       368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~k  447 (523)
T KOG3837|consen  368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKK  447 (523)
T ss_pred             HhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCee
Confidence            45566777777765331 14567887776     24678999999999999999999988541            23599


Q ss_pred             EEEEEcCCC-CCCceeEEEEEeCccccccccccCcccccCC
Q 021294          269 VLVYDKDTF-TTDDFMGDAEIDIQPLVTAARACETPISMSP  308 (314)
Q Consensus       269 i~v~d~d~~-~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~~  308 (314)
                      |++|.+..+ .+|.++|.+.+.|..|-...+..+...++.+
T Consensus       448 feifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DG  488 (523)
T KOG3837|consen  448 FEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDG  488 (523)
T ss_pred             EEEeeccccccccceeceeeeeehhhhcccchhhceecccc
Confidence            999998764 5678999999999988777666665555444

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.93  E-value=0.015  Score=59.12  Aligned_cols=90  Identities=24%  Similarity=0.546  Sum_probs=69.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C------CeEeeeeeecC-CCCCcccce-eEEE--ecCCCCcEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G------HQTVKTRVIKS-NLNPVWNES-LMLS--IPENIPPLKVLVY  272 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~------~~~~kT~~~~~-tlnP~w~e~-~~f~--v~~~~~~L~i~v~  272 (314)
                      .++.+.|+|+++.-|-.+..   ..||.|.+ |      ...++|++... ++||+|+|. |.|.  +-+....|+|.||
T Consensus       701 IA~t~sV~VISgqFLSdrkv---gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavy  777 (1189)
T KOG1265|consen  701 IAATLSVTVISGQFLSDRKV---GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVY  777 (1189)
T ss_pred             EEeeEEEEEEeeeecccccc---CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeee
Confidence            45788999999987765543   58999987 2      24568888775 699999954 6775  3445678999999


Q ss_pred             EcCCCCCCceeEEEEEeCcccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      +...    .+||+--+++..|..|+.+.
T Consensus       778 eEgg----K~ig~RIlpvd~l~~GYrhv  801 (1189)
T KOG1265|consen  778 EEGG----KFIGQRILPVDGLNAGYRHV  801 (1189)
T ss_pred             ccCC----ceeeeeccchhcccCcceeE
Confidence            9653    69999999999998887654

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.75  E-value=0.28  Score=41.34  Aligned_cols=86  Identities=23%  Similarity=0.292  Sum_probs=58.6

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d  275 (314)
                      ..+.|+|..+.++... ....+-||.+.+  |.+.    ..|+...-...+.|+|.+.|++.-    ....|.|.||+..
T Consensus         8 ~~f~i~i~~~~~~~~~-~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~   86 (173)
T cd08693           8 EKFSITLHKISNLNAA-ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEVS   86 (173)
T ss_pred             CCEEEEEEEeccCccC-CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEec
Confidence            3678888888888751 124566777655  5543    355555445679999999998642    3467999999864


Q ss_pred             CCC----------------CCceeEEEEEeCcc
Q 021294          276 TFT----------------TDDFMGDAEIDIQP  292 (314)
Q Consensus       276 ~~~----------------~dd~iG~~~v~l~~  292 (314)
                      ...                .+..||.+.++|-+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd  119 (173)
T cd08693          87 KKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD  119 (173)
T ss_pred             ccccccccccccccccccCcceEEEEEeEEEEc
Confidence            321                24689999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.70  E-value=0.33  Score=40.30  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=58.3

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeEe----eeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQTV----KTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~~----kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d  275 (314)
                      ..+.|+|+.+.++...+  .++-||.+.+  |.+..    .|+.+.. .++.|||.+.|++.-    ....|.|+||+..
T Consensus         8 ~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~   84 (158)
T cd08398           8 SNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSVK   84 (158)
T ss_pred             CCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEEe
Confidence            46789999998887643  4678888766  44432    3443333 579999999998742    3467999999965


Q ss_pred             CCC----CCceeEEEEEeCcc
Q 021294          276 TFT----TDDFMGDAEIDIQP  292 (314)
Q Consensus       276 ~~~----~dd~iG~~~v~l~~  292 (314)
                      ...    ....+|.+.++|-+
T Consensus        85 ~~~~~k~~~~~iG~~ni~LFd  105 (158)
T cd08398          85 GRKGAKEEHCPLAWGNINLFD  105 (158)
T ss_pred             cccCCCCceEEEEEEEEEEEC
Confidence            421    22469999999875

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.65  E-value=0.29  Score=40.33  Aligned_cols=86  Identities=19%  Similarity=0.229  Sum_probs=55.5

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  276 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~  276 (314)
                      .+.|++....++...+....+-||.+.+  |.+.    ..|.......++.|||.+.|++.-    ....|.|.||+.+.
T Consensus         9 ~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~   88 (156)
T cd08380           9 NLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSE   88 (156)
T ss_pred             CeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEec
Confidence            4556666666655422224566777655  4432    233333333679999999998632    34679999999765


Q ss_pred             CC--CCceeEEEEEeCcc
Q 021294          277 FT--TDDFMGDAEIDIQP  292 (314)
Q Consensus       277 ~~--~dd~iG~~~v~l~~  292 (314)
                      .+  .+..||.+.++|-+
T Consensus        89 ~~~~~~~~iG~~~~~lFd  106 (156)
T cd08380          89 PGSKKEVPLGWVNVPLFD  106 (156)
T ss_pred             CCCCcceEEEEEeEEeEc
Confidence            44  46789999999875

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=94.39  E-value=0.005  Score=63.38  Aligned_cols=75  Identities=20%  Similarity=0.231  Sum_probs=58.3

Q ss_pred             CCCCCCCcCCCC-CCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHHHHHhhhC
Q 021294           26 QPGNRHCADCGS-PDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYT  102 (314)
Q Consensus        26 ~~~N~~C~dC~~-~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n~~~e~~~  102 (314)
                      ...+..|++|++ +.-.|+++++.+..|+.|+++|+..+.|++...++.+++..+  |...-..|++..-..+.++..
T Consensus       627 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~--vn~~d~~g~~plh~~~~~g~~  702 (785)
T KOG0521|consen  627 ASSDGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGAD--VNALDSKGRTPLHHATASGHT  702 (785)
T ss_pred             hccCccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCc--chhhhccCCCcchhhhhhccc
Confidence            345889999997 567899999999999999999999999999999988888777  444445544444444554444

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.04  E-value=0.26  Score=40.94  Aligned_cols=68  Identities=21%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             CCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCCCCCCceeEEEEEeCccc
Q 021294          226 SDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       226 ~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l  293 (314)
                      ++.||.+.+  +++.    ..|....-+..+.|||.+.|++.-    ....|.|+||+....+....+|.+.++|-+.
T Consensus        30 ~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          30 SDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            455555544  3322    244444445668899999998742    3467999999987665677999999998753

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=93.87  E-value=0.4  Score=39.53  Aligned_cols=92  Identities=14%  Similarity=0.294  Sum_probs=66.1

Q ss_pred             eEEEEEEEeeecCCCCCC---C--CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCC--------------CCc
Q 021294          206 GLIKVNVVKGTNLAVRDV---M--TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN--------------IPP  266 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~---~--~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~--------------~~~  266 (314)
                      -.|+|+|..++-+...-.   .  .+--.+-+.+++|.++|+.+..+.+|.|+|.|.|++...              ..+
T Consensus         9 ~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~p   88 (156)
T PF15627_consen    9 RYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDP   88 (156)
T ss_pred             eEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCc
Confidence            467888888765422111   1  222344456689999999999999999999999998643              246


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCccccccc
Q 021294          267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      |.+-|..-|..+...++|...++...++...
T Consensus        89 ihivli~~d~~~~~~Lv~s~~ldWR~vL~s~  119 (156)
T PF15627_consen   89 IHIVLIRTDPSGETTLVGSHFLDWRKVLCSG  119 (156)
T ss_pred             eEEEEEEecCCCceEeeeeceehHHHHhccC
Confidence            8888877777666688999888888766443

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=93.31  E-value=0.8  Score=42.78  Aligned_cols=84  Identities=17%  Similarity=0.308  Sum_probs=69.1

Q ss_pred             EEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC--------CCCcEEEEEEEcC-CCC
Q 021294          208 IKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE--------NIPPLKVLVYDKD-TFT  278 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~--------~~~~L~i~v~d~d-~~~  278 (314)
                      +.|.|++|++++...  ...-++..++++....|..+.++-.|.|+..+.-++..        ...+|++++|.-+ .-+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            578899999998763  23456777889999999999999999999988876642        4578999999988 556


Q ss_pred             CCceeEEEEEeCccc
Q 021294          279 TDDFMGDAEIDIQPL  293 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l  293 (314)
                      ..+.+|.+.++|...
T Consensus        80 ~re~iGyv~LdLRsa   94 (340)
T PF12416_consen   80 KRESIGYVVLDLRSA   94 (340)
T ss_pred             cceeccEEEEEcccc
Confidence            778999999999988

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=92.19  E-value=0.28  Score=47.97  Aligned_cols=59  Identities=32%  Similarity=0.632  Sum_probs=48.4

Q ss_pred             eeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC----CCCCceeEEEEEeCccccccc
Q 021294          239 VKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT----FTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       239 ~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~----~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .+|.++.+.+||.|.+.|.+... +....|+|+++|-+.    +..++|+|++...+..++...
T Consensus        43 ~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~  106 (529)
T KOG1327|consen   43 GRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSS  106 (529)
T ss_pred             cceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhh
Confidence            48999999999999999887754 356789999999654    456789999999999887543

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.21  E-value=1.1  Score=37.48  Aligned_cols=88  Identities=20%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeEe----eeeeec----CCCCCcccceeEEEecC----CCCcEEEE
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTV----KTRVIK----SNLNPVWNESLMLSIPE----NIPPLKVL  270 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~~----kT~~~~----~tlnP~w~e~~~f~v~~----~~~~L~i~  270 (314)
                      ..+.|+|..+.+++..-.. ..+-||.+.+  |.+..    .|+...    -...+.|||.+.|++.-    ....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            4677888888888765433 4677888765  54432    343221    12357799999998642    34569999


Q ss_pred             EEEcCCCC---------CCceeEEEEEeCccc
Q 021294          271 VYDKDTFT---------TDDFMGDAEIDIQPL  293 (314)
Q Consensus       271 v~d~d~~~---------~dd~iG~~~v~l~~l  293 (314)
                      ||+.....         .+..||.+.++|-+.
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~  119 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF  119 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcc
Confidence            99866543         356899999998753

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=90.94  E-value=1.3  Score=35.87  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=39.7

Q ss_pred             eeeeecCC-CCCcccceeEEEec--C--CCCcEEEEEEEcCCCCCC----ceeEEEEEeCccc
Q 021294          240 KTRVIKSN-LNPVWNESLMLSIP--E--NIPPLKVLVYDKDTFTTD----DFMGDAEIDIQPL  293 (314)
Q Consensus       240 kT~~~~~t-lnP~w~e~~~f~v~--~--~~~~L~i~v~d~d~~~~d----d~iG~~~v~l~~l  293 (314)
                      .|.....+ .++.|+|.+.|.+.  +  ....|.|.||+.+.....    ..||.+.++|-+.
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~   85 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY   85 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence            55555555 79999999999863  2  456799999997765554    6999999998753

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=90.85  E-value=3.7  Score=35.03  Aligned_cols=55  Identities=22%  Similarity=0.316  Sum_probs=41.4

Q ss_pred             eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCC--CceeEEEEEeCc
Q 021294          237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTT--DDFMGDAEIDIQ  291 (314)
Q Consensus       237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~--dd~iG~~~v~l~  291 (314)
                      ..++|.+..++.+|.|+|++.+.++.   ....|.|+++....-.+  ...+|-+.++|-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            35688899999999999999999875   34568888877443221  257898888883

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=89.64  E-value=3.3  Score=35.06  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=50.8

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeE---eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT---VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDT  276 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~---~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~  276 (314)
                      .+.|+|..+..+ ..+.. ...-||.+.+  |...   .+|....-+.++.|||.+.|++.-    ....|.|.||+...
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            456666666532 22211 2335566544  4432   245555556679999999998742    34569999998522


Q ss_pred             C----------------CCCceeEEEEEeCcc
Q 021294          277 F----------------TTDDFMGDAEIDIQP  292 (314)
Q Consensus       277 ~----------------~~dd~iG~~~v~l~~  292 (314)
                      .                ..+..||-+.+.|-+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD  121 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID  121 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEc
Confidence            1                124578888888865

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=88.16  E-value=0.96  Score=41.29  Aligned_cols=81  Identities=23%  Similarity=0.312  Sum_probs=59.4

Q ss_pred             ceeeeeEEEEEEEeeecCCCCCC--C-CCCcEEEEEECCe-EeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294          201 MVEFVGLIKVNVVKGTNLAVRDV--M-TSDPYVILALGHQ-TVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT  276 (314)
Q Consensus       201 ~~e~~g~L~V~v~~a~~L~~~d~--~-~~dPyv~v~l~~~-~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~  276 (314)
                      .+...|+|.+.++.+++|.....  + ..+.||++..+.+ ..+|.+-....--.|.|.|...+.. ...+.+.||.|+.
T Consensus        46 ~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~-~~vl~~lvySW~p  124 (442)
T KOG1452|consen   46 LVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN-IEVLHYLVYSWPP  124 (442)
T ss_pred             eecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc-ceeeeEEEeecCc
Confidence            44566899999999999965433  3 6788999988765 3566666556667899999988754 3568888999887


Q ss_pred             CCCCce
Q 021294          277 FTTDDF  282 (314)
Q Consensus       277 ~~~dd~  282 (314)
                      -.++.+
T Consensus       125 q~RHKL  130 (442)
T KOG1452|consen  125 QRRHKL  130 (442)
T ss_pred             hhhccc
Confidence            555543

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=87.60  E-value=2.9  Score=31.25  Aligned_cols=64  Identities=19%  Similarity=0.261  Sum_probs=45.7

Q ss_pred             CCcEEEEEECC-eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 021294          226 SDPYVILALGH-QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       226 ~dPyv~v~l~~-~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~  294 (314)
                      .+..+++.+++ ...+|..... .+..|++.|.|++.. ...|.|.||-+|-   ..+.|...+.|++..
T Consensus         9 ~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR-sRELEI~VywrD~---RslCav~~lrLEd~~   73 (98)
T cd08687           9 SEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER-SRELEIAVYWRDW---RSLCAVKFLKLEDER   73 (98)
T ss_pred             cceEEEEEEcCeEEeecccccc-ccccccceeEEEeec-ccEEEEEEEEecc---hhhhhheeeEhhhhc
Confidence            46667788876 4456665543 578999999999965 4689999998765   245666777777743

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=87.42  E-value=4.9  Score=34.47  Aligned_cols=55  Identities=13%  Similarity=0.228  Sum_probs=41.2

Q ss_pred             eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCC----CCceeEEEEEeCc
Q 021294          237 QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT----TDDFMGDAEIDIQ  291 (314)
Q Consensus       237 ~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~----~dd~iG~~~v~l~  291 (314)
                      ...+|-+.-++.+|.|+|++.+.++.   ....|.|+++....-.    ....+|-+.++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            45788888889999999999999875   3466899998754221    2246888888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=85.53  E-value=5.6  Score=33.24  Aligned_cols=68  Identities=16%  Similarity=0.281  Sum_probs=49.7

Q ss_pred             CCcEEEEEECCeE-eeeeeecC--CCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeEEEEEeCcccc
Q 021294          226 SDPYVILALGHQT-VKTRVIKS--NLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       226 ~dPyv~v~l~~~~-~kT~~~~~--tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG~~~v~l~~l~  294 (314)
                      ..-|+++.++++. .+|+...-  ...-.|+|.|.+.+..-.+.|.|+||.... ..+.+|+++.+++-...
T Consensus        37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            3567788886654 34444332  334467888998887777889999999887 67889999999986554

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=85.45  E-value=8.1  Score=30.86  Aligned_cols=88  Identities=17%  Similarity=0.267  Sum_probs=56.7

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCeE---eeeeeec-CCCCCcccceeEEEec----C-----CCCcEEEEEEE
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQT---VKTRVIK-SNLNPVWNESLMLSIP----E-----NIPPLKVLVYD  273 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~---~kT~~~~-~tlnP~w~e~~~f~v~----~-----~~~~L~i~v~d  273 (314)
                      .+.|.|.+..+++..   ....||.+..+...   ..|.... .+..-.|+|.|.+.+.    .     ....+.|.|+.
T Consensus         8 ~~~l~i~~l~~~p~~---~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~   84 (143)
T PF10358_consen    8 QFDLTIHELENLPSS---NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFE   84 (143)
T ss_pred             EEEEEEEEeECcCCC---CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEE
Confidence            566777777777662   23445666555543   4444333 3455689999988752    1     22458889988


Q ss_pred             cCCCCCCceeEEEEEeCccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      ...-+....+|.+.++|.++....
T Consensus        85 ~~~~~~k~~lG~~~inLaey~~~~  108 (143)
T PF10358_consen   85 VDGSGKKKVLGKVSINLAEYANED  108 (143)
T ss_pred             ecCCCccceEEEEEEEHHHhhCcC
Confidence            743333368999999999998653

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>PRK12495 hypothetical protein; Provisional

Probab=85.34  E-value=0.32  Score=42.01  Aligned_cols=39  Identities=31%  Similarity=0.632  Sum_probs=28.9

Q ss_pred             HHHHHHHHHc---CCCCCCCcCCCCCCCCeEEecccceechhhHHH
Q 021294           16 PRARLENLLR---QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGI   58 (314)
Q Consensus        16 ~~~~~~~l~~---~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~   58 (314)
                      ..+++-+||.   ...+..|-+||.+=|.+    -|+.+|..|..+
T Consensus        26 ~~~~ma~lL~~gatmsa~hC~~CG~PIpa~----pG~~~Cp~CQ~~   67 (226)
T PRK12495         26 ATERMSELLLQGATMTNAHCDECGDPIFRH----DGQEFCPTCQQP   67 (226)
T ss_pred             HHHHHHHHHHhhcccchhhcccccCcccCC----CCeeECCCCCCc
Confidence            3444555554   45789999999999832    599999999755

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=84.95  E-value=2.6  Score=35.68  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=33.6

Q ss_pred             EeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCC---CceeEEEEEeCcc
Q 021294          238 TVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTT---DDFMGDAEIDIQP  292 (314)
Q Consensus       238 ~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~---dd~iG~~~v~l~~  292 (314)
                      ...|.+.-++.+|.|+|+|.+.++.   ....|.|++++...-..   ...+|.+.++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            4577788888999999999999976   23568899998654322   2689999999876

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=83.38  E-value=1.2  Score=27.78  Aligned_cols=33  Identities=12%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             CCCCcCCCCCCCCeEEecccceechhhHHH-Hhh
Q 021294           29 NRHCADCGSPDPKWVSLSTGVFICIKCSGI-HRS   61 (314)
Q Consensus        29 N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~-Hr~   61 (314)
                      +..|..|......+...+=++++|..|... |+.
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~   36 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG   36 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC
Confidence            578999998878899999999999999988 886

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=82.31  E-value=10  Score=28.64  Aligned_cols=68  Identities=22%  Similarity=0.250  Sum_probs=40.2

Q ss_pred             EEEEEEeeecCCCCCCC-CCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294          208 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  275 (314)
Q Consensus       208 L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d  275 (314)
                      +.+.+....+....... ..+-||.+.+  |++.    ..|....-...+.|||.+.|++.-    ....|.|.+|+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            33444444444433222 2467777765  4432    244444445568999999998642    3456999999854

Outlier of C2 family.

>PRK00085 recO DNA repair protein RecO; Reviewed

Probab=81.97  E-value=0.99  Score=40.00  Aligned_cols=31  Identities=32%  Similarity=0.757  Sum_probs=26.9

Q ss_pred             CCCCCCCcCCCCCCC-CeEEecccceechhhH
Q 021294           26 QPGNRHCADCGSPDP-KWVSLSTGVFICIKCS   56 (314)
Q Consensus        26 ~~~N~~C~dC~~~~p-~w~s~~~g~~~C~~C~   56 (314)
                      .|.-..|+-||.+.. .|.+..-|.++|..|.
T Consensus       146 ~p~l~~C~~Cg~~~~~~~f~~~~gg~~c~~c~  177 (247)
T PRK00085        146 GLDLDHCAVCGAPGDHRYFSPKEGGAVCSECG  177 (247)
T ss_pred             ccchhhHhcCCCCCCceEEecccCCccccccc
Confidence            466689999998755 8999999999999997

>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[]

Probab=80.44  E-value=1.4  Score=26.86  Aligned_cols=27  Identities=33%  Similarity=0.893  Sum_probs=22.6

Q ss_pred             CCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294           27 PGNRHCADCGSPDPKWVSLSTGVFICIKCS   56 (314)
Q Consensus        27 ~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~   56 (314)
                      ..|..|..|++.   |...+=|-+.|..|-
T Consensus         6 ~~~~~C~~C~~~---~~~~~dG~~yC~~cG   32 (36)
T PF11781_consen    6 GPNEPCPVCGSR---WFYSDDGFYYCDRCG   32 (36)
T ss_pred             cCCCcCCCCCCe---EeEccCCEEEhhhCc
Confidence            446679999987   888888999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
2iqj_A	134	Crystal Structure Of The Gap Domain Of Smap1l (Loc6		5e-29
3fm8_C	392	Crystal Structure Of Full Length Centaurin Alpha-1		2e-25
3feh_A	386	Crystal Structure Of Full Length Centaurin Alpha-1		2e-25
2crr_A	141	Solution Structure Of Arfgap Domain From Human Smap		6e-24
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		6e-22
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		6e-22
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		7e-22
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		5e-18
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		2e-17
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-17
3sub_A	163	Crystal Structure Of The Catalytic Domain Of Plasmo		4e-16
3o47_A	329	Crystal Structure Of Arfgap1-Arf1 Fusion Protein Le		3e-14
2p57_A	144	Gap Domain Of Znf289, An Id1-Regulated Zinc Finger		3e-14
3dwd_A	147	Crystal Structure Of The Arfgap Domain Of Human Arf		6e-14
2crw_A	149	Solution Structure Of The Arfgap Domain Of Adp-Ribo		7e-14
2owa_A	138	Crystal Structure Of Putative Gtpase Activating Pro		1e-12
3b7y_A	153	Crystal Structure Of The C2 Domain Of The E3 Ubiqui		8e-11
3m7f_B	176	Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX		3e-10
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		9e-10
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		9e-09
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		3e-08
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		2e-07
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		7e-07
2olm_A	140	Arfgap Domain Of Hiv-1 Rev Binding Protein Length =		9e-07
2d9l_A	134	Solution Structure Of The Arfgap Domain Of Human Ri		1e-06
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		4e-06
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		9e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		2e-05
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		4e-05
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-05
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		1e-04
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		2e-04
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		2e-04
3n5a_A	138	Synaptotagmin-7, C2b-Domain, Calcium Bound Length =		2e-04
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		2e-04
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		2e-04
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		3e-04
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		3e-04
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		4e-04
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		4e-04
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		5e-04
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		6e-04
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		6e-04

>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744) Stromal Membrane-Associated Protein 1-Like Length = 134

Iteration: 1
 Score =  124 bits (312), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 60/123 (48%), Positives = 82/123 (66%), Gaps = 4/123 (3%)
Query: 11  KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVL 70
           K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVHIS+V 
Sbjct: 9   KDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVK 68
Query: 71  SVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE 130
           SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +  ++    FIR KYEK +
Sbjct: 69  SVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDPAVE---GFIRDKYEKKK 124
Query: 131 FFN 133
           + +
Sbjct: 125 YMD 127

>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound With The Fha Domain Of Kif13b (Capri Target) Length = 392

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           RA LE LL++PGN  CADCG+PDP W S + GVFIC+ CSGIHR++   +SKV SV+LD 
Sbjct: 25  RAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA 82
Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136
           W   QV+ +A   GN A   ++E+  P    +P+P+     R  +IR KYE+ EF   ++
Sbjct: 83  WEEAQVEFMASH-GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 141
Query: 137 QALLCPYPAPHR 148
           Q    PY A +R
Sbjct: 142 QE---PYSAGYR 150

>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1 Length = 386

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/132 (46%), Positives = 83/132 (62%), Gaps = 6/132 (4%)
Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           RA LE LL++PGN  CADCG+PDP W S + GVFIC+ CSGIHR++   +SKV SV+LD 
Sbjct: 23  RAVLE-LLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA 80
Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE 136
           W   QV+ +A   GN A   ++E+  P    +P+P+     R  +IR KYE+ EF   ++
Sbjct: 81  WEEAQVEFMASH-GNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139
Query: 137 QALLCPYPAPHR 148
           Q    PY A +R
Sbjct: 140 QE---PYSAGYR 148

>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1 Length = 141

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 66/97 (68%), Gaps = 1/97 (1%)
Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           L  LLR+  N++CADC +  P+W S + GVFICI+C+GIHR+LGVHIS+V SV LD+WT 
Sbjct: 20  LSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTA 79
Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFID 116
           EQ+  + +M GN      YEA  P N ++P  +  ++
Sbjct: 80  EQIQCMQDM-GNTKARLLYEANLPENFRRPQTDQAVE 115

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 28  GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE 87
           GN  C DC  P P+W S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E
Sbjct: 44  GNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE 103
Query: 88  MGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           + GN+ +N+ YEA      +KKP P+    E+  +I  KY + +F  
Sbjct: 104 L-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 28  GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE 87
           GN  C DC  P P+W S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E
Sbjct: 44  GNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE 103
Query: 88  MGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           + GN+ +N+ YEA      +KKP P+    E+  +I  KY + +F  
Sbjct: 104 L-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score =  101 bits (251), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 66/107 (61%), Gaps = 2/107 (1%)
Query: 28  GNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE 87
           GN  C DC  P P+W S++ GV +CI+CSGIHRSLGVH SKV S+ LD W  E V  + E
Sbjct: 44  GNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE 103
Query: 88  MGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFN 133
           + GN+ +N+ YEA      +KKP P+    E+  +I  KY + +F  
Sbjct: 104 L-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLT 149

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 88.2 bits (217), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 25  RQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDA 84
           R  GN  C DCG+PDP W+S + G+  CI+CSGIHR LGVH S++ S+ LD     ++  
Sbjct: 13  RMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSEL-L 71
Query: 85  LAEMGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKY 126
           LA+  GN   N+  E   P  +  KP+P S +  R D+I  KY
Sbjct: 72  LAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKY 114

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 26  QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDAL 85
           +PGN  C DCG+ DP W+S + GV  CI+CSG+HR LGV  S++ S+ LD     ++  L
Sbjct: 39  RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LL 97
Query: 86  AEMGGNIAVNKKYEAYTPGNLK-KPSPNSFIDERSDFIRRKYEKLEF 131
           A   GN + N+  EA  P +   KPS  S +  R D+I  KY +  F
Sbjct: 98  ALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 144

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 26  QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDAL 85
           +PGN  C DCG+ DP W+S + GV  CI+CSG+HR LGV  S++ S+ LD     ++  L
Sbjct: 20  RPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSEL-LL 78
Query: 86  AEMGGNIAVNKKYEAYTPGNLK-KPSPNSFIDERSDFIRRKYEKLEF 131
           A   GN + N+  EA  P +   KPS  S +  R D+I  KY +  F
Sbjct: 79  ALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRF 125

>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium Falciparum Arf Gtpase Activating Protein Length = 163

Iteration: 1
 Score = 82.0 bits (201), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/90 (46%), Positives = 58/90 (64%), Gaps = 9/90 (10%)
Query: 29  NRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEM 88
           N  C DCG  +P WVS++ G+F+CI CSG+HRSLGVHIS V S+K+D +T+EQ+  + + 
Sbjct: 22  NNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKG 81
Query: 89  GGNIAVNKKYEAYTPGNLKKPSPNSFIDER 118
           G     NKK + Y    L+    + FI ER
Sbjct: 82  G-----NKKCQTY----LENYGISDFIPER 102

>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein Length = 329

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 61/92 (66%), Gaps = 3/92 (3%)
Query: 11  KNVSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISK 68
           + ++ PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S 
Sbjct: 17  QGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSF 76
Query: 69  VLSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 100
           V SV +D+W + +++ + + GGN    +  E+
Sbjct: 77  VRSVTMDKWKDIELEKM-KAGGNAKFREFLES 107

>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein Length = 144

Iteration: 1
 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 47/66 (71%), Gaps = 2/66 (3%)
Query: 27 PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDAL 85
          P N+ C DCG+ +P W S++ GVF+CI CSG+HRSLGVH+S + S +LD  W   Q+  +
Sbjct: 35 PTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCM 94
Query: 86 AEMGGN 91
           ++GGN
Sbjct: 95 -QVGGN 99

>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1 Length = 147

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 61/91 (67%), Gaps = 3/91 (3%)
Query: 12  NVSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKV 69
           +++ PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V
Sbjct: 19  SMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFV 78
Query: 70  LSVKLDEWTNEQVDALAEMGGNIAVNKKYEA 100
            SV +D+W + +++ + + GGN    +  E+
Sbjct: 79  RSVTMDKWKDIELEKM-KAGGNAKFREFLES 108

>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of Adp-Ribosylation Factor Gtpaseactivating Protein 3 (Arfgap 3) Length = 149

Iteration: 1
 Score = 74.3 bits (181), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 53/83 (63%), Gaps = 2/83 (2%)
Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WT 78
            + L   P N+ C DCG+ +P W S++ GVF+CI CSG HRSLGVH+S + S +LD  W+
Sbjct: 20  FKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWS 79
Query: 79  NEQVDALAEMGGNIAVNKKYEAY 101
             Q+  + ++GGN + +  +  +
Sbjct: 80  WFQLRCM-QVGGNASASSFFHQH 101

>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein For Adp Ribosylation Factor From Cryptosporidium Parvum (Cgd5_1040) Length = 138

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 45/66 (68%), Gaps = 1/66 (1%)
Query: 26 QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDAL 85
          +P NR C DC S +P W+SLS  VFIC+ CS  HR +GVHIS V S  LD++T  Q+  +
Sbjct: 33 RPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRM 92
Query: 86 AEMGGN 91
           ++GGN
Sbjct: 93 -DIGGN 97

>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 259
           +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++  
Sbjct: 21  IVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR 80
Query: 260 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 306
           +      L   V+D++  T DDF+G  ++ + PL T     E P + 
Sbjct: 81  VHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTF 127

>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 58/107 (54%), Gaps = 7/107 (6%)
Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLS 259
           +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++  
Sbjct: 9   VVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR 68
Query: 260 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 306
           +      +   V+D++  T DDF+G  ++ + PL T     E P + 
Sbjct: 69  VLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTF 115

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 60.8 bits (146), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 8/108 (7%)
Query: 207 LIKVNVVKGTNLAVRDVM-TSDPYVILAL-------GHQTVKTRVIKSNLNPVWNESLML 258
           +++V VV G +LA +D+   SDPYV L+L           V+T+ IK  LNP WNE    
Sbjct: 22  ILRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF 81
Query: 259 SIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISM 306
            +  +   L   V+D++  T DDF+G  ++ +  L T     E P + 
Sbjct: 82  RVNPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHLPTEDPTMERPYTF 129

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 205 VGLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
           +G + V+V++ T L A +    S+PY  +++G Q+  TR I+  LNP WN +    I + 
Sbjct: 386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDL 445
Query: 264 IPPLKVL-VYDKDTFTTDDFMGDAEIDIQPLVTAARA 299
              +  L ++D+D F+ DDF+G  EI +  + T   +
Sbjct: 446 YQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 260
           V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN+     I
Sbjct: 9   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 68
Query: 261 PENIPPLKVLVYDKDTFTTDDFMGDAEI 288
            +    L+V V+D+D     DF+G   I
Sbjct: 69  KDIHDVLEVTVFDEDGDKPPDFLGKVAI 96

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 206 GLIKVNVVKGTNLAVRDVMTS-DPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPEN 263
           G ++V +V    L   D + + DPYV L    Q  K+ V +     P WNE+ + ++ E 
Sbjct: 10  GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEG 69
Query: 264 IPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
              LK  ++DKD  T DD +G+A I ++P+
Sbjct: 70  TTELKAKIFDKDVGTEDDAVGEATIPLEPV 99

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 208 IKVNVVKGTNLAVRD-VMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPP 266
           I + VV    L  +D   +SDPYV + +G    +T+ I  NLNPVW E+       +   
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78
Query: 267 LKVLVYDKD-----------TFTTDDFMGDAEIDIQPL 293
           +KV V D+D              +DDF+G   I+++ L
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein Length = 140

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           L ++   P NR C DC    P +V+++ G F+C  CSG  R L     +V S+ +  +T 
Sbjct: 16  LRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNP-PHRVKSISMTTFTQ 74
Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER--SDFIRRKYEKLEFFNFDEQ 137
           ++++ L + G  +        +   +   P    F D +   +F++ KYEK  ++   EQ
Sbjct: 75  QEIEFLQKHGNEVCKQIWLGLFDDRSSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQ 131
Query: 138 A 138
           A
Sbjct: 132 A 132

>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip Length = 134

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 6/125 (4%)
Query: 20  LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTN 79
           L ++   P NR C DC    P +V+++ G F+C  CSG  R L     +V S+ +  +T 
Sbjct: 11  LRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQ 69
Query: 80  EQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER--SDFIRRKYEKLEFFNFDEQ 137
           ++++ L + G  +        +   +   P    F D +   +F++ KYEK  ++   EQ
Sbjct: 70  QEIEFLQKHGNEVCKQIWLGLFDDRSSAIP---DFRDPQKVKEFLQEKYEKKRWYVPPEQ 126
Query: 138 ALLCP 142
           A   P
Sbjct: 127 AKSGP 131

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 278
           SDPYV L L          KT+ IKS+LNP WNE+    + E+     L V ++D D  +
Sbjct: 193 SDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 252
Query: 279 TDDFMGDAEIDIQPLVTAA 297
            +DFMG     I  L  A 
Sbjct: 253 RNDFMGSLSFGISELQKAG 271

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI-PENIP-PLKVLVYDKDTFT 278
           SDPYV L L          KTR +K+ LNPVWNE+ + ++ P ++   L V V+D D  +
Sbjct: 41  SDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVFNLKPGDVERRLSVEVWDWDRTS 100
Query: 279 TDDFMGDAEIDIQPLVTA 296
            +DFMG     +  L+ A
Sbjct: 101 RNDFMGAMSFGVSELLKA 118

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPENIPP--LKVLVYDKDTFT 278
           SDPYV L L          KT+ IK +LNP WNE+    + E+     L V ++D D  +
Sbjct: 52  SDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLTS 111
Query: 279 TDDFMGDAEIDIQPLVTAA 297
            +DFMG     I  L  A 
Sbjct: 112 RNDFMGSLSFGISELQKAG 130

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 278
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 38  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 97
Query: 279 TDDFMGDAEIDIQPLV 294
            +DFMG     +  L+
Sbjct: 98  RNDFMGSLSFGVSELM 113

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 278
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 37  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 96
Query: 279 TDDFMGDAEIDIQPLV 294
            +DFMG     +  L+
Sbjct: 97  RNDFMGSLSFGVSELM 112

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 14/92 (15%)
Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
           + V ++K   L  +D   TSDP+V + L       ++T+V + NLNP WNE+ +    E 
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLF---EG 84
Query: 264 IPPLKVL-------VYDKDTFTTDDFMGDAEI 288
            P  KV+       V D D F+ +D +G+  I
Sbjct: 85  FPYEKVVQRILYLQVLDYDRFSRNDPIGEVSI 116

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 206 GLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
           GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211
Query: 260 I-PENIP--PLKVLVYDKDTFTTDDFMG 284
           + PE++    L + V D D    ++ +G
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIG 239

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 9/88 (10%)
Query: 206 GLIKVNVVKGTNLAVRDVMT-SDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
           GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+  
Sbjct: 153 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 212
Query: 260 I-PENIP--PLKVLVYDKDTFTTDDFMG 284
           + PE++    L + V D D    ++ +G
Sbjct: 213 VAPESVENVGLSIAVVDYDCIGHNEVIG 240

>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-----NLNPVWNESLMLSIP 261
           I VN++K  NL   D+  TSDPYV + L ++  +    K+     NLNP++NES    IP
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77
Query: 262 -ENIPPLKVL--VYDKDTFTTDDFMG 284
            E +    ++  V DKD  + +D +G
Sbjct: 78  TEKLRETTIIITVMDKDKLSRNDVIG 103

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI--PENIPPLKVLVYDKDTFT 278
           SDPYV L L          KT+ I+S LNP WNES    +   +    L V ++D D  T
Sbjct: 39  SDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRTT 98
Query: 279 TDDFMGDAEIDIQPL 293
            +DF G     +  L
Sbjct: 99  RNDFXGSLSFGVSEL 113

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 60/105 (57%), Gaps = 19/105 (18%)
Query: 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL----GHQTV----------KTRVIKSNLN 249
           +G + +++++  NL  RD    SDP+V + L    G   V          +T+ ++ +LN
Sbjct: 17  LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLN 76
Query: 250 PVWNESLM---LSIPENIP-PLKVLVYDKDTFTTDDFMGDAEIDI 290
           P WN++++   +S+ + +   L+V V+D D F+++DF+G+  ID+
Sbjct: 77  PEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 23  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 266 PLKVL---VYDKDTFTTDDFMGDAEI 288
             K L   VYD D F+  D +G+ ++
Sbjct: 83  AGKTLVMAVYDFDRFSKHDIIGEFKV 108

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 21  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 266 PLKVL---VYDKDTFTTDDFMGDAEI 288
             K L   VYD D F+  D +G+ ++
Sbjct: 81  GGKTLVMAVYDFDRFSKHDIIGEFKV 106

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 210 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 266 PLKVL---VYDKDTFTTDDFMGDAEI 288
             K L   VYD D F+  D +G+ ++
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 210 VNVVKGTNLAVRDVM-TSDPYV---ILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV   +L    +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 266 PLKVL---VYDKDTFTTDDFMGDAEI 288
             K L   VYD D F+  D +G+ ++
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKV 123

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 46  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 266 PLKVL---VYDKDTFTTDDFMGDAEI 288
             K L   VYD D F+  D +G+ ++
Sbjct: 106 GGKTLVMAVYDFDRFSKHDIIGEFKV 131

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 276
           +DPYV L L         ++T+ +++  NPVWNE+L    I E       L++ V D+D 
Sbjct: 50  ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 109
Query: 277 FTTDDFMGDAEIDIQPLVTAAR 298
           F  ++F+G+    ++ L    R
Sbjct: 110 FGHNEFIGETRFSLKKLKANQR 131

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 226 SDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLML-SIPE---NIPPLKVLVYDKDT 276
           +DPYV L L         ++T+ +++  NPVWNE+L    I E       L++ V D+D 
Sbjct: 48  ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDK 107
Query: 277 FTTDDFMGDAEIDIQPLVTAAR 298
           F  ++F+G+    ++ L    R
Sbjct: 108 FGHNEFIGETRFSLKKLKANQR 129

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	4e-56
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	2e-55
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-55
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-52
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	4e-52
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-52
2owa_A	138	Arfgap-like finger domain containing protein; zinc	3e-49
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	1e-48
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	2e-45
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	8e-44
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-40
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	6e-40
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	1e-39
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-39
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	3e-37
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-35
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	1e-34
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	1e-32
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-31
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-31
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-29
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	2e-27
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	8e-25
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-24
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	7e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	5e-23
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	8e-23
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	2e-22
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-20
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	5e-20
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	5e-19
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	9e-19
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	1e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	3e-16
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-18
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	3e-15
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	2e-18
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	5e-18
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	7e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	1e-17
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-17
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	6e-17
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-16
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	1e-16
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	2e-16
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-16
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	3e-16
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	3e-16
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	6e-16
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	8e-16
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-15
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	2e-14
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-12
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-10
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	2e-09
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	3e-07
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1u5k_A	244	Hypothetical protein; OBD-fold, Zn-binding, recomb	8e-05
3k1f_M	197	Transcription initiation factor IIB; RNA polymeras	2e-04

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens} Length = 134

 Score =  177 bits (450), Expect = 4e-56
 Identities = 60/126 (47%), Positives = 79/126 (62%), Gaps = 4/126 (3%)

Query: 6   ANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVH 65
                K+V   +A L NLL +  N+ CADC S  P+W S + GVFICI+C+GIHR+LGVH
Sbjct: 4   TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVH 63

Query: 66  ISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRK 125
           IS+V SV LD+WT EQ+  + EM GN   N+ YEAY P   ++P  +        FIR K
Sbjct: 64  ISRVKSVNLDQWTQEQIQCMQEM-GNGKANRLYEAYLPETFRRPQIDP---AVEGFIRDK 119

Query: 126 YEKLEF 131
           YEK ++
Sbjct: 120 YEKKKY 125

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score =  176 bits (447), Expect = 2e-55
 Identities = 55/130 (42%), Positives = 78/130 (60%), Gaps = 4/130 (3%)

Query: 2   ATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRS 61
           ++  +    K     +  L  LLR+  N++CADC +  P+W S + GVFICI+C+GIHR+
Sbjct: 2   SSGSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRN 61

Query: 62  LGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDF 121
           LGVHIS+V SV LD+WT EQ+  + +M GN      YEA  P N ++P  +        F
Sbjct: 62  LGVHISRVKSVNLDQWTAEQIQCMQDM-GNTKARLLYEANLPENFRRPQTD---QAVEFF 117

Query: 122 IRRKYEKLEF 131
           IR KYEK ++
Sbjct: 118 IRDKYEKKKY 127

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score =  182 bits (462), Expect = 5e-55
 Identities = 54/193 (27%), Positives = 79/193 (40%), Gaps = 7/193 (3%)

Query: 6   ANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVH 65
             +  +   G    +  +    GN  C DC  P P+W S++ GV +CI+CSGIHRSLGVH
Sbjct: 22  GMARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVH 81

Query: 66  ISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTP-GNLKKPSPNSFIDERSDFIRR 124
            SKV S+ LD W  E V  + E+ GN+ +N+ YEA      +KKP P+    E+  +I  
Sbjct: 82  FSKVRSLTLDSWEPELVKLMCEL-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHA 140

Query: 125 KYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIGIAFRNSWGR 184
           KY + +F        L                     K     +    R      +    
Sbjct: 141 KYVEKKFL-----TKLPEIRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLG 195

Query: 185 KESESKNSKKANS 197
                    +A+ 
Sbjct: 196 SLHPGALLFRASG 208

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score =  174 bits (441), Expect = 1e-52
 Identities = 44/132 (33%), Positives = 68/132 (51%), Gaps = 2/132 (1%)

Query: 1   MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60
           +  + +  D +     +  +  +  +PGN  C DCG+ DP W+S + GV  CI+CSG+HR
Sbjct: 14  LVPRGSGHDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHR 73

Query: 61  SLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKK-PSPNSFIDERS 119
            LGV  S++ S+ LD     ++     M GN + N+  EA  P +    PS  S +  R 
Sbjct: 74  ELGVRFSRMQSLTLDLLGPSELLLALNM-GNTSFNEVMEAQLPSHGGPKPSAESDMGTRR 132

Query: 120 DFIRRKYEKLEF 131
           D+I  KY +  F
Sbjct: 133 DYIMAKYVEHRF 144

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score =  175 bits (444), Expect = 4e-52
 Identities = 60/198 (30%), Positives = 88/198 (44%), Gaps = 18/198 (9%)

Query: 1   MATQHANSDPKNVSGP-----RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKC 55
           M   H +S  +          R  +  LL++PGN  CADCG+PDP W S + GVFIC+ C
Sbjct: 1   MHHHHHHSSGRENLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSC 60

Query: 56  SGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFI 115
           SGIHR++   +SKV SV+LD W   QV+      GN A   ++E+  P    +P+P+   
Sbjct: 61  SGIHRNIP-QVSKVKSVRLDAWEEAQVE-FMASHGNDAARARFESKVPSFYYRPTPSDCQ 118

Query: 116 DERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSSHDKKHYEKQATRHRIG 175
             R  +IR KYE+ EF                +   S+        K+  +      R  
Sbjct: 119 LLREQWIRAKYERQEF-----------IYPEKQEPYSAGYREGFLWKRGRDNGQFLSRKF 167

Query: 176 IAFRNSWGRKESESKNSK 193
           +        K     ++K
Sbjct: 168 VLTEREGALKYFNRNDAK 185

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score =  171 bits (434), Expect = 8e-52
 Identities = 44/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           +  +  + R  GN  C DCG+PDP W+S + G+  CI+CSGIHR LGVH S++ S+ LD 
Sbjct: 5   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 64

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKK-PSPNSFIDERSDFIRRKYEKLEF 131
               ++  LA+  GN   N+  E   P      P+P S +  R D+I  KY +  +
Sbjct: 65  LGTSELL-LAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 119

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II} Length = 138

 Score =  159 bits (405), Expect = 3e-49
 Identities = 40/129 (31%), Positives = 61/129 (47%), Gaps = 7/129 (5%)

Query: 2   ATQHANSDPKNVSGPRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIH 59
                  +   VS        + +  +P NR C DC S +P W+SLS  VFIC+ CS  H
Sbjct: 7   LINADVDEKGFVSDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDH 66

Query: 60  RSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERS 119
           R +GVHIS V S  LD++T  Q+  + ++GGN      ++     N    +     +  S
Sbjct: 67  RKMGVHISFVRSSDLDKFTPIQLVRM-DIGGNGRARNYFKQVLGVNFSPKT----KEYAS 121

Query: 120 DFIRRKYEK 128
               R+Y++
Sbjct: 122 SICGRQYKQ 130

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A Length = 140

 Score =  158 bits (401), Expect = 1e-48
 Identities = 31/151 (20%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 6   ANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVH 65
           +++  K        L ++   P NR C DC    P +V+++ G F+C  CSG  R L   
Sbjct: 2   SSAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP 61

Query: 66  ISKVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRK 125
             +V S+ +  +T ++++ L +  GN    + +                  +  +F++ K
Sbjct: 62  -HRVKSISMTTFTQQEIEFLQKH-GNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEK 119

Query: 126 YEKLEFFNFDEQALLCPYPAPHRRSSSSSTS 156
           YEK  ++           P    +  +S  +
Sbjct: 120 YEKKRWYV----------PPEQAKVVASVHA 140

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens} Length = 147

 Score =  150 bits (380), Expect = 2e-45
 Identities = 36/113 (31%), Positives = 62/113 (54%), Gaps = 1/113 (0%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V SV +D+
Sbjct: 26  RKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK 85

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKL 129
           W + +++ + + GGN    +  E+    +        +    +   R K   L
Sbjct: 86  WKDIELEKM-KAGGNAKFREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVAL 137

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7} Length = 163

 Score =  146 bits (370), Expect = 8e-44
 Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 7/150 (4%)

Query: 17  RARLENLLRQ-PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLD 75
              +  L ++   N  C DCG  +P WVS++ G+F+CI CSG+HRSLGVHIS V S+K+D
Sbjct: 9   VEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMD 68

Query: 76  EWTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPS-PNSFIDER-SDFIRRKYEKLEFFN 133
            +T+EQ+  + + GGN       E Y   +        +   +     +R     ++   
Sbjct: 69  IFTDEQLKYI-DKGGNKKCQTYLENYGISDFIPERKYRTKAADHYRKILRSIVHNVD--- 124

Query: 134 FDEQALLCPYPAPHRRSSSSSTSSSSHDKK 163
                 L    +      + + + ++ ++ 
Sbjct: 125 PPAPLPLDEGKSLINYGRNENVNENNKNQY 154

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score =  146 bits (369), Expect = 3e-40
 Identities = 46/125 (36%), Positives = 67/125 (53%), Gaps = 2/125 (1%)

Query: 8   SDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHIS 67
            D +     +  +  +  +PGN  C DCG+ DP W+S + GV  CI+CSG+HR LGV  S
Sbjct: 2   HDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFS 61

Query: 68  KVLSVKLDEWTNEQVDALAEMGGNIAVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKY 126
           ++ S+ LD     ++  LA   GN + N+  EA  P +   KPS  S +  R D+I  KY
Sbjct: 62  RMQSLTLDLLGPSEL-LLALNMGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKY 120

Query: 127 EKLEF 131
            +  F
Sbjct: 121 VEHRF 125

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 149

 Score =  136 bits (343), Expect = 6e-40
 Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 11/131 (8%)

Query: 6   ANSDPKNVSGPRAR-----LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHR 60
            +S    +  P  +      + L   P N+ C DCG+ +P W S++ GVF+CI CSG HR
Sbjct: 1   GSSGSSGMGDPSKQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHR 60

Query: 61  SLGVHISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYTPGNLK-KPSPNSFIDER 118
           SLGVH+S + S +LD  W+  Q+  + ++GGN + +  +  +           NS     
Sbjct: 61  SLGVHLSFIRSTELDSNWSWFQLRCM-QVGGNASASSFFHQHGCSTNDTNAKYNS---RA 116

Query: 119 SDFIRRKYEKL 129
           +   R K + L
Sbjct: 117 AQLYREKIKSL 127

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens} Length = 144

 Score =  135 bits (341), Expect = 1e-39
 Identities = 41/126 (32%), Positives = 63/126 (50%), Gaps = 6/126 (4%)

Query: 6   ANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVH 65
             S   N +  +   + L   P N+ C DCG+ +P W S++ GVF+CI CSG+HRSLGVH
Sbjct: 14  RGSAEPNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVH 73

Query: 66  ISKVLSVKLDE-WTNEQVDALAEMGGNIAVNKKYEAYTPGNLKKPS-PNSFIDERSDFIR 123
           +S + S +LD  W   Q+  + ++GGN      +  +        +  NS     +   R
Sbjct: 74  LSFIRSTELDSNWNWFQLRCM-QVGGNANATAFFRQHGCTANDANTKYNSRA---AQMYR 129

Query: 124 RKYEKL 129
            K  +L
Sbjct: 130 EKIRQL 135

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  135 bits (341), Expect = 1e-39
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)

Query: 195 ANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWN 253
           ++     V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN
Sbjct: 2   SSGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWN 61

Query: 254 ESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 297
           +     I +    L+V V+D+D     DF+G   I +  +    
Sbjct: 62  KVFTFPIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score =  128 bits (324), Expect = 3e-37
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKS-NLNPVWNESLMLSIPE 262
            G ++V +V    L   D +   DPYV L    Q  K+ V +     P WNE+ + ++ E
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
               LK  ++DKD  T DD +G+A I ++P+     
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGS 104

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score =  124 bits (313), Expect = 2e-35
 Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 197 SLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLN 249
            L+   E   +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LN
Sbjct: 11  GLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLN 70

Query: 250 PVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSPC 309
           P WNE ++  +      L   V+D++  T DDF+G  ++ + PL T     E P +    
Sbjct: 71  PKWNEEILFRVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDF 130

Query: 310 NL 311
            L
Sbjct: 131 VL 132

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score =  122 bits (307), Expect = 1e-34
 Identities = 24/93 (25%), Positives = 44/93 (47%), Gaps = 4/93 (4%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP---- 261
           G+++V V   +N+        DP V +    +  KT+ + + LNPVWNE L   +     
Sbjct: 7   GMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPL 66

Query: 262 ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 294
           +    L ++V D +T   +  +G A + ++ L 
Sbjct: 67  DFSSSLGIIVKDFETIGQNKLIGTATVALKDLT 99

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score =  118 bits (296), Expect = 1e-32
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 7/106 (6%)

Query: 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLM 257
             +++V V+ G  LA +D++  SDPYV + L         +V+T+ IK +LNP WNE ++
Sbjct: 7   TRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEIL 66

Query: 258 LSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACETP 303
             +      +   V+D++  T DDF+G  ++ + PL T     E P
Sbjct: 67  FRVLPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP 112

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  114 bits (287), Expect = 1e-31
 Identities = 33/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 192 SKKANSLVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNP 250
           + K + L    ++   I + VV    L  +D   +SDPYV + +G    +T+ I  NLNP
Sbjct: 3   AVKQSVLDGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNP 62

Query: 251 VWNESLMLSIPENIPPLKVLVYDKD-----------TFTTDDFMGDAEIDIQPL 293
           VW E+       +   +KV V D+D              +DDF+G   I+++ L
Sbjct: 63  VWEENFHFECHNSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL 116

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score =  114 bits (287), Expect = 2e-31
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 178 FRNSWGRKESESKNSKKANS---LVAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILA 233
             +S GR+    +    + S    +  +     +++ V+       +       PYV + 
Sbjct: 5   HHHSSGRENLYFQGMSDSGSQLGSMGSLTMKSQLQITVISAKLKENKKNWFGPSPYVEVT 64

Query: 234 LGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
           +  Q+ KT    +  +P W + L + +      L   V+   T  +D  +G A +DI   
Sbjct: 65  VDGQSKKTEKCNNTNSPKWKQPLTVIVTPV-SKLHFRVWSHQTLKSDVLLGTAALDIYET 123

Query: 294 VTAARAC 300
           + +    
Sbjct: 124 LKSNNMK 130

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  108 bits (272), Expect = 1e-29
 Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 201 MVEFVGLIKVNVVKGTNLAVRDVM------------TSDPYVILALGHQTV-KTRVIKSN 247
           MV F GL+K+ + +  +L                    DPY+ L +    + +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 248 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAA 297
            +P W++  +  +  N   +++ V+       DDF+ +  I  + L+   
Sbjct: 61  NSPAWHDEFVTDVC-NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNG 109

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score =  108 bits (271), Expect = 2e-27
 Identities = 35/88 (39%), Positives = 57/88 (64%), Gaps = 3/88 (3%)

Query: 16  PRAR--LENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVK 73
           PR R  L+ +  Q  N  C +CG+ +P+WVS++ G++IC++CSG HR LGVH+S V SV 
Sbjct: 22  PRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVT 81

Query: 74  LDEWTNEQVDALAEMGGNIAVNKKYEAY 101
           +D+W + +++   + GGN    +  E+ 
Sbjct: 82  MDKWKDIELE-KMKAGGNAKFREFLESQ 108

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 97.0 bits (241), Expect = 8e-25
 Identities = 22/135 (16%), Positives = 50/135 (37%), Gaps = 13/135 (9%)

Query: 180 NSWGRKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNLAVRDV-----------MTSDP 228
           +S       S    + +     ++F G ++V + +   L                   DP
Sbjct: 3   SSHHHHHHSSGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDP 62

Query: 229 YVILALGHQTV-KTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAE 287
           Y+ +++    V +T   +    P +NE    ++ +    L++ V+ +     D F+ +  
Sbjct: 63  YLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTDG-GHLELAVFHETPLGYDHFVANCT 121

Query: 288 IDIQPLVTAARACET 302
           +  Q L+    A +T
Sbjct: 122 LQFQELLRTTGASDT 136

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 94.7 bits (236), Expect = 2e-24
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLML 258
               V V++ T +          T DPYV L +        +TR   +++NPVWNE+   
Sbjct: 3   HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEF 62

Query: 259 SIPENI-PPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            +  N    L++ + D + +  D+ +G A   +  +
Sbjct: 63  ILDPNQENVLEITLMDAN-YVMDETLGTATFTVSSM 97

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score =  100 bits (250), Expect = 7e-24
 Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 2/92 (2%)

Query: 209 KVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP--P 266
            V+  +  +L       +D Y+ +  G Q  +T V+ +N NP W + +           P
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
           L+V V+D D    DD +G  +           
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHSGFHEVT 488

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 91.3 bits (227), Expect = 8e-23
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 259
            ++ V V    NL   D    SDPYV L L          KT+ IK +LNP WNE+    
Sbjct: 31  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 90

Query: 260 IPENIP--PLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
           + E+     L V ++D D  + +DFMG     I  L
Sbjct: 91  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 126

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 90.1 bits (224), Expect = 2e-22
 Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 7/92 (7%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQTVKTRVIKSNLNPVWNESLMLSIPENI 264
           I++ V+   NLA +D     DP+  + +    Q   T  +K+ L+P WN+   L + +  
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT- 65

Query: 265 PPLKVLVYDKDTFTTDD---FMGDAEIDIQPL 293
             + + V++           F+G   +    +
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNAI 97

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 84.7 bits (210), Expect = 2e-20
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97

Query: 266 P---LKVLVYDKDTFTTDDFMGDAEIDI 290
               L + VYD D F+  D +G+ ++ +
Sbjct: 98  GGKTLVMAVYDFDRFSKHDIIGEFKVPM 125

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 84.0 bits (208), Expect = 5e-20
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 7/88 (7%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +  
Sbjct: 46  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105

Query: 266 P---LKVLVYDKDTFTTDDFMGDAEIDI 290
               L + VYD D F+  D +G+ ++ +
Sbjct: 106 GGKTLVMAVYDFDRFSKHDIIGEFKVPM 133

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 80.8 bits (200), Expect = 5e-19
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-I 260
             + V ++K   L  +D   TSDP+V + L       ++T+V + NLNP WNE+ +    
Sbjct: 26  STLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGF 85

Query: 261 PENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
           P        L + V D D F+ +D +G+  I +
Sbjct: 86  PYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPL 118

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 80.1 bits (198), Expect = 9e-19
 Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 15/94 (15%)

Query: 209 KVNVVKGTNLAVRDV--MTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
            VN+ +   L   D   MTSDPY+ + +       VKTRV++  L+P ++E+        
Sbjct: 25  VVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTF---YG 81

Query: 264 IPP-------LKVLVYDKDTFTTDDFMGDAEIDI 290
           IP        L   +   D F+ DD +G+  I +
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPL 115

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.3 bits (206), Expect = 1e-18
 Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 261
             + V +++  +L  +D    SDPYV + L     +  +T+V +  LNP++NE+   S+P
Sbjct: 20  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 79

Query: 262 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 291
                   L   VYD D F+  D +G   +D  
Sbjct: 80  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL 112

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 76.4 bits (188), Expect = 3e-16
 Identities = 28/102 (27%), Positives = 47/102 (46%), Gaps = 9/102 (8%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLS 259
           GL+ V ++K +NL   D+   SDPYV  +L  +       KT + K+ LNP +NE+L+  
Sbjct: 152 GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 211

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
           +         L + V D D    ++ +G   +  +      R
Sbjct: 212 VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGR 253

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 82.5 bits (204), Expect = 2e-18
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 208 IKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
           + V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P +
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80

Query: 264 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
                 L + VYD D F+  D +G+ ++ +  +
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 73.7 bits (181), Expect = 3e-15
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLS 259
           G + V +++  NL   DV   SDPYV + L          KT + K+ LNP +NES    
Sbjct: 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 209

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMG 284
           +P        + V V D D    +D +G
Sbjct: 210 VPFEQIQKVQVVVTVLDYDKIGKNDAIG 237

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 79.0 bits (195), Expect = 2e-18
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 19/100 (19%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL--------------GHQTVKTRVIKSNLNPVWNE 254
           +++++  NL  RD    SDP+V + L                   +T+ ++ +LNP WN+
Sbjct: 22  IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81

Query: 255 SL-MLSIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
           ++   SI         L+V V+D D F+++DF+G+  ID+
Sbjct: 82  TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDL 121

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 78.2 bits (193), Expect = 5e-18
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 16/94 (17%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
             +++   L   D    +DPYV L L         ++T+ +++  NPVWNE+L       
Sbjct: 33  CTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQY---HG 89

Query: 264 IPP-------LKVLVYDKDTFTTDDFMGDAEIDI 290
           I         L++ V D+D F  ++F+G+    +
Sbjct: 90  ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSL 123

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 78.2 bits (193), Expect = 7e-18
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 210 VNVVKGTNLAVRDVM--TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           V+V +   LA  D     S+PYV   L          KT + +  +NP+++E+L   IPE
Sbjct: 27  VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86

Query: 263 NIPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
           ++     L+  V+    F  + F+G+AEI +
Sbjct: 87  SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQM 117

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 77.0 bits (190), Expect = 1e-17
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 210 VNVVKGTNLAVRDVMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
           V  ++            D YV  ++    G    +T + K  L+  W E L+L + E   
Sbjct: 30  VTRLEAVTSNHDG--GCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEEL 87

Query: 266 P---LKVLVYDKDTFTTDDFMGDAEIDI 290
           P   L + +   D F+     G+  + +
Sbjct: 88  PTATLTLTLRTCDRFSRHSVAGELRLGL 115

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 82.7 bits (203), Expect = 1e-17
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 9/98 (9%)

Query: 203 EFVGLIKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNES 255
           ++     V V++ T +          T DPYV L +        +TR   +++NPVWNE+
Sbjct: 15  QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNET 74

Query: 256 LMLSIPENI-PPLKVLVYDKDTFTTDDFMGDAEIDIQP 292
               +  N    L++ + D +    D+ +G A   +  
Sbjct: 75  FEFILDPNQENVLEITLMDANYV-MDETLGTATFTVSS 111

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 75.0 bits (185), Expect = 6e-17
 Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 9/91 (9%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLSIPEN 263
           VN++K  NL   D+  TSDPYV + L ++       KT   K NLNP++NES    IP  
Sbjct: 20  VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79

Query: 264 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 291
                 + + V DKD  + +D +G   +  +
Sbjct: 80  KLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 74.8 bits (184), Expect = 1e-16
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 14/99 (14%)

Query: 206 GLIKVNVVKGTNLAVRDVM--------TSDPYVILAL---GHQTVKTRVIKSNLNPVWNE 254
             + V V++  +L               S+PYV + L      + +T V +    PV+ E
Sbjct: 26  NHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEE 85

Query: 255 SLMLSIPENIPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
                IP        L + V D D F+    +G   + +
Sbjct: 86  RYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 26/91 (28%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 210 VNVVKGTNLAVRDVMTSDPYVILAL----GHQT-VKTRVIKSNLNPVWNESLMLSIPENI 264
           V V    NL       SDPYV + L          KT V K  LNPV+++S   S+    
Sbjct: 28  VVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE 87

Query: 265 PP---LKVLVYDKDTFTTDD--FMGDAEIDI 290
                L V V +   F + D   +G   + +
Sbjct: 88  VQRRTLDVAVKNSGGFLSKDKGLLGKVLVAL 118

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 74.3 bits (183), Expect = 2e-16
 Identities = 19/101 (18%), Positives = 46/101 (45%), Gaps = 8/101 (7%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLSI 260
            ++ +++++G  L  +   T DPYV ++L  +       KT+ +    +P ++E     +
Sbjct: 27  RVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPV 86

Query: 261 PENIPP--LKVLVYDKDTFTT-DDFMGDAEIDIQPLVTAAR 298
            E      L V V+++ + +     +G     ++ L+T  +
Sbjct: 87  QEEDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDK 127

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 74.7 bits (184), Expect = 2e-16
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 9/90 (10%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILALGHQTV-----KTRVIKSNLNPVWNESLMLSIPEN 263
           V +++  +LA  D    SDP+V L L          KT++ K  LNP +NE     I  +
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100

Query: 264 IPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
                 L + V+D D   ++D++G  ++ I
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGI 130

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 73.6 bits (181), Expect = 3e-16
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 210 VNVVKGTNLAVRDV-MTSDPYVILAL------GHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           + +++ +NL+           + +A+           +TR + ++   V+NE   +S+  
Sbjct: 47  ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106

Query: 263 NIPPLKVL---VYDKDTFTTDDFMGDAEIDI 290
                K L   V   D    ++ +G A+I +
Sbjct: 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISL 137

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 73.1 bits (180), Expect = 3e-16
 Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 210 VNVVKGTNLAVRDVMTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPEN 263
           + V+   +L   D    +PYV   L          KT++ +   NP +NE L+ S   + 
Sbjct: 24  IMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKE 83

Query: 264 IPP---LKVLVYDKDTFTTDDFMGDAEIDI 290
                 L++ V   ++   + F+G   + +
Sbjct: 84  TLRQRELQLSVLSAESLRENFFLGGITLPL 113

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 71.9 bits (177), Expect = 6e-16
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
           V ++   +L  R+     +PYV +            +T+ +K  L P WN++ +      
Sbjct: 22  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY---SP 78

Query: 264 IPP-------LKVLVYDKDTFTTD--DFMGDAEIDIQ 291
           +         L++ ++D+     +  +F+G+  I+++
Sbjct: 79  VHRREFRERMLEITLWDQARVREEESEFLGEILIELE 115

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 72.8 bits (179), Expect = 7e-16
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 9/91 (9%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLSIPEN 263
           V +++  NL   DV   SDPYV + L          KT + K+ LNP +NES    +P  
Sbjct: 29  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88

Query: 264 IPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 291
                 + V V D D    +D +G   +   
Sbjct: 89  QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
             + V V+K  +L   DV   SDPYV + L H        KT V K   N V+NE  +  
Sbjct: 30  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 89

Query: 260 IP-ENIPP--LKVLVYDKDTFTTDDFMGDAEIDI 290
           IP E++    ++ LV D +  + ++ +G   +  
Sbjct: 90  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGA 123

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 71.2 bits (175), Expect = 2e-15
 Identities = 17/97 (17%), Positives = 42/97 (43%), Gaps = 18/97 (18%)

Query: 210 VNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPEN 263
           V ++   +L  R+     +PYV +            +T+ +K  L P WN++ +      
Sbjct: 25  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIY---SP 81

Query: 264 IPP-------LKVLVYDKDTFTTD--DFMGDAEIDIQ 291
           +         L++ ++D+     +  +F+G+  I+++
Sbjct: 82  VHRREFRERMLEITLWDQARVREEESEFLGEILIELE 118

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 69.0 bits (169), Expect = 2e-14
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 8/89 (8%)

Query: 210 VNVVKGTNLAVRDV--MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE 262
           V V++  +L  +     T  PYV + L          KTR+ +  L+P++ +SL+     
Sbjct: 34  VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP 93

Query: 263 NIPPLKVLVY-DKDTFTTDDFMGDAEIDI 290
               L+V+V+ D        FMG A+I +
Sbjct: 94  QGKVLQVIVWGDYGRMDHKCFMGVAQILL 122

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
            L+ V V K      ++    + YV L + +    T  ++    P W +  M  I     
Sbjct: 5   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDL 61

Query: 266 PLKVLVYDKDTFTTDDFMGDAEIDI 290
            L V V++K     D  +G   I +
Sbjct: 62  GLTVEVWNKGLI-WDTMVGTVWIPL 85

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 57.3 bits (138), Expect = 2e-10
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 4/89 (4%)

Query: 203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE 262
             + L+ V V K      ++    + YV L + +    T  ++ +  P W +  M  I  
Sbjct: 11  GILSLLCVGVKKAKFDGAQEKF--NTYVTLKVQNVESTTIAVRGS-QPSWEQDFMFEINR 67

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 291
               L V V++K     D  +G   I ++
Sbjct: 68  LDLGLTVEVWNKG-LIWDTMVGTVWIPLR 95

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 3/124 (2%)

Query: 184 RKESESKNSKKANSLVAMVEFVGLIKVNVVKGTNL-AVRDVMTSDPYVILALGHQTVKTR 242
               + +  K   +       +G + V+V++ T L A +    S+PY  +++G Q+  TR
Sbjct: 365 IDTEKKQREKAYQARSQKTSGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTR 424

Query: 243 VIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACE 301
            I+  LNP WN +    I +     L + ++D+D F+ DDF+G  EI +  + T   +  
Sbjct: 425 TIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQESK- 483

Query: 302 TPIS 305
            P++
Sbjct: 484 GPMT 487

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 14/93 (15%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 210 VNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPV-WNESLMLSIPENIPP-- 266
           V++   + L  R    +D    +    Q+  +RV+++  +   ++E+    +  +I    
Sbjct: 25  VHLKTVSELRGR----ADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNE 80

Query: 267 -LKVLVYDKDTFTTDDFMGDAEIDIQPLVTAAR 298
            L++ +++     ++  +G   + +Q +V   R
Sbjct: 81  VLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENR 113

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 208 IKVNVVKGTNLAVRDVMTSDPYVILAL-GHQTVKTRVIK---SNLNPVWNESLMLSIPEN 263
           +K+ +++   L  +       Y  L L      +T       S     W E    +    
Sbjct: 13  LKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 264 IPPLKVLVY----DKDTFTTDDFMGDAEIDIQPL 293
           +  L++ +Y     K       ++G   + +  L
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATL 102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 7e-05
 Identities = 35/257 (13%), Positives = 76/257 (29%), Gaps = 93/257 (36%)

Query: 10  PKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKV 69
           P +   P   L  +                  W  +     + +       SL       
Sbjct: 382 PPSAHIPTILLSLI------------------WFDVIKSDVMVVVNKLHKYSL------- 416

Query: 70  LSVKLDEWTNE--------QVDALAEMGGNIAVNKK----Y---EAYTPGNLKKPSPNSF 114
               +++   E         ++   ++    A+++     Y   + +   +L  P  + +
Sbjct: 417 ----VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 115 I-------------DERSDFIRRKYEKLEFFNFDEQALLCPYPAPHRRSSSSSTSSSS-- 159
                          ER    R  +  L+ F F EQ +        R  S++  +S S  
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVF--LD-FRFLEQKI--------RHDSTAWNASGSIL 521

Query: 160 ---HDKKHYEKQATRHRIGIAFRNSWGRKESESKNSKKANSLVAMVEFVGLIKVNVV--K 214
                 K Y+     +               + K  +  N++   ++F+  I+ N++  K
Sbjct: 522 NTLQQLKFYKPYICDN---------------DPKYERLVNAI---LDFLPKIEENLICSK 563

Query: 215 GTNLAVRDVMTSDPYVI 231
            T+L    +M  D  + 
Sbjct: 564 YTDLLRIALMAEDEAIF 580

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 35/238 (14%), Positives = 68/238 (28%), Gaps = 64/238 (26%)

Query: 5   HANSDPKNVSGPRARLENLLRQPGNRHC----AD-------------C----GSPDPKWV 43
           H+++    +   +A L  LL+     +C     +             C     +   K V
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQV 277

Query: 44  SLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE--MGGN------IAVN 95
           +           S  H S+ +   +V S+ L ++ + +   L    +  N      IA +
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAES 336

Query: 96  KKYEAYTPGNLKKPSPNSFIDERSDFI--------RRKYEKLEFFNFDEQ---ALLC--- 141
            +    T  N K  + +         +        R+ +++L  F         LL    
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 142 ---PYPAP-------HRRS----SSSSTSSSSHD-----KKHYEKQATRHRIGIAFRN 180
                          H+ S        ++ S        K   E +   HR  +   N
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454

>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C Length = 244

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 30  RHCADCGSPDPKWVSLSTGVFICIKCSG-----------IHRSLGVHISKVLSVKLDEWT 78
             CA CG+PDP+      G  +C KC+            +  ++   +       +    
Sbjct: 151 ARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPVPSAD 210

Query: 79  NEQVDALAE 87
              +    E
Sbjct: 211 RPALWRALE 219

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 22/81 (27%)

Query: 1  MATQHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVS-LSTGVFICIKCSGIH 59
          M T+   S  K        L  +L       C +C    PK V   S G  +C  C  + 
Sbjct: 1  MMTR--ESIDKRAGRRGPNLNIVLT------CPECKVYPPKIVERFSEGDVVCALCGLV- 51

Query: 60 RSLGVHISKVLSVKLD---EW 77
            L   +       +D   EW
Sbjct: 52 --LSDKL-------VDTRSEW 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
2iqj_A	134	Stromal membrane-associated protein 1-like; zinc,	100.0
2crr_A	141	Stromal membrane-associated protein SMAP1B; arfgap	100.0
2olm_A	140	Nucleoporin-like protein RIP; arfgap, GTPase-activ	100.0
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	100.0
2owa_A	138	Arfgap-like finger domain containing protein; zinc	100.0
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	100.0
3dwd_A	147	ADP-ribosylation factor GTPase-activating protein;	100.0
2crw_A	149	ARF GAP 3, ADP-ribosylation factor GTPase-activati	100.0
2p57_A	144	GTPase-activating protein ZNF289; zinc finger, GAP	100.0
3sub_A	163	ADP-ribosylation factor GTPase-activating protein;	100.0
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	100.0
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	100.0
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.97
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.96
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.73
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.73
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.72
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.7
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.7
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.69
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.68
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.68
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.67
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.67
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.67
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.66
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.66
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.66
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.66
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.66
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.66
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.66
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.65
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.64
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.64
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.64
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.64
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.63
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.63
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.63
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.63
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.62
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.62
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.62
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.61
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.6
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.59
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.58
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.53
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.52
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.5
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.5
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.47
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.43
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.38
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.37
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.37
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.35
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.16
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.16
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.03
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.0
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.94
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	98.24
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	98.15
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	89.91
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	89.44
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	87.55
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	86.3
3dfx_A	63	Trans-acting T-cell-specific transcription factor	85.24
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	81.11
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	80.73

>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}

Probab=100.00  E-value=1.2e-46  Score=299.89  Aligned_cols=127  Identities=46%  Similarity=0.836  Sum_probs=109.4

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294            4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD   83 (314)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~   83 (314)
                      .|+..++++.+.++++|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+
T Consensus         2 ~m~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~   81 (134)
T 2iqj_A            2 SMTGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQ   81 (134)
T ss_dssp             -----------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHH
T ss_pred             CcccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHH
Confidence            36677788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294           84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF  134 (314)
Q Consensus        84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~  134 (314)
                      .|+ .+||..+|++||+++|+.+.+|.++   +.+++||++||++++|+.+
T Consensus        82 ~m~-~~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~  128 (134)
T 2iqj_A           82 CMQ-EMGNGKANRLYEAYLPETFRRPQID---PAVEGFIRDKYEKKKYMDR  128 (134)
T ss_dssp             HHH-TCHHHHHHHHHTTTCCSSCCCCCSH---HHHHHHHHHHHTSCTTCCT
T ss_pred             HHH-HHchHHHHHHHHhcCCccCCCCCch---HHHHHHHHHHHhCCeeeCC
Confidence            995 5699999999999999887777653   5688999999999999974

>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=1.4e-45  Score=296.32  Aligned_cols=127  Identities=43%  Similarity=0.799  Sum_probs=116.8

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294            4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD   83 (314)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~   83 (314)
                      +-+....+.++..+++|++|++.|+|+.|||||+++|+|||+|||||||++||||||.||+|||+||||+||+|++++|+
T Consensus         4 ~~~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~   83 (141)
T 2crr_A            4 GSSGKAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQ   83 (141)
T ss_dssp             CCCCCTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHH
Confidence            34456677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294           84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNF  134 (314)
Q Consensus        84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~  134 (314)
                      .|+. +||..+|++||+++|+.+.+|.++   +.+++||++||++++|+.+
T Consensus        84 ~m~~-~GN~~an~~~e~~lp~~~~~P~~~---~~~e~fIr~KY~~k~f~~~  130 (141)
T 2crr_A           84 CMQD-MGNTKARLLYEANLPENFRRPQTD---QAVEFFIRDKYEKKKYYDK  130 (141)
T ss_dssp             HHHH-THHHHHHHHGGGSCCTTCCCCCSH---HHHHHHHHHHHTSCTTCCC
T ss_pred             HHHH-HccHHHHHHHHhcCCcccCCCCch---HHHHHHHHHHHhcCcccCC
Confidence            9976 599999999999999887777653   5688999999999999963

>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A

Probab=100.00  E-value=4.7e-44  Score=287.12  Aligned_cols=124  Identities=26%  Similarity=0.485  Sum_probs=110.2

Q ss_pred             CCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcc
Q 021294           11 KNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGG   90 (314)
Q Consensus        11 ~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gG   90 (314)
                      ++++.++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||+||+| |+|+||+||+|++++|+.|+. ||
T Consensus         7 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~-~G   84 (140)
T 2olm_A            7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQK-HG   84 (140)
T ss_dssp             HHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHH-CH
T ss_pred             HHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHH-hc
Confidence            4556789999999999999999999999999999999999999999999999997 999999999999999999965 69


Q ss_pred             hhHHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeeccccc
Q 021294           91 NIAVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNFDEQ  137 (314)
Q Consensus        91 N~~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~~  137 (314)
                      |..+|++||+++++. ..+|.+. +.+.+++||++||++++|+.+..+
T Consensus        85 N~~an~~~e~~~~~~~~~~P~~~-d~~~~~~fIr~KYe~k~f~~~~~~  131 (140)
T 2olm_A           85 NEVCKQIWLGLFDDRSSAIPDFR-DPQKVKEFLQEKYEKKRWYVPPEQ  131 (140)
T ss_dssp             HHHHHHHHTTTCCTTTSCCCCTT-CHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred             cHHHHHHHHhhCCcccCCCCCCC-CHHHHHHHHHHHHcCCeeeCCccc
Confidence            999999999999753 3344433 356788999999999999986555

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=100.00  E-value=9.9e-39  Score=299.66  Aligned_cols=128  Identities=39%  Similarity=0.743  Sum_probs=113.9

Q ss_pred             CCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHH
Q 021294            8 SDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAE   87 (314)
Q Consensus         8 ~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~   87 (314)
                      ++-+++++.+++|+.|++.|+|+.|||||+++|+|||+|||||||++||||||+||+|||+||||+||.|++++|+.|+.
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~  103 (368)
T 3jue_A           24 ARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCE  103 (368)
T ss_dssp             --------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHH
Confidence            45677788889999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             hcchhHHHHHHhhhCCC-CCCCCCCCCCHHHHHHHHhcccccceeecccc
Q 021294           88 MGGNIAVNKKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE  136 (314)
Q Consensus        88 ~gGN~~~n~~~e~~~~~-~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~  136 (314)
                      . ||..+|++||+.+++ ...||.|+++.+.|++||++||++++|+...+
T Consensus       104 ~-gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~  152 (368)
T 3jue_A          104 L-GNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP  152 (368)
T ss_dssp             S-CHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred             H-ccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence            5 999999999999986 35799999999999999999999999997544

>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.8e-38  Score=253.25  Aligned_cols=113  Identities=34%  Similarity=0.533  Sum_probs=97.4

Q ss_pred             CCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294           13 VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI   92 (314)
Q Consensus        13 ~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~   92 (314)
                      ++..+++++.|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+||||+||+|++++|+.|+ .|||.
T Consensus        20 ~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~-~~GN~   98 (138)
T 2owa_A           20 DKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMD-IGGNG   98 (138)
T ss_dssp             HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHH-HCCHH
T ss_pred             HHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHH-hhccH
Confidence            34556777789999999999999999999999999999999999999999999999999999999999999996 47999


Q ss_pred             HHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccce
Q 021294           93 AVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLE  130 (314)
Q Consensus        93 ~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~  130 (314)
                      .+|++||+.....   | +.+..+....|+.++|+++.
T Consensus        99 ~an~~~e~~~~~~---~-~~~~~~kY~s~~a~~Y~~kL  132 (138)
T 2owa_A           99 RARNYFKQVLGVN---F-SPKTKEYASSICGRQYKQIL  132 (138)
T ss_dssp             HHHHHHHHHTCTT---C-CGGGCHHHHSHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCC---C-CCCHHHHHhhHHHHHHHHHH
Confidence            9999999965321   1 12234556789999999874

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=100.00  E-value=2.3e-38  Score=298.25  Aligned_cols=123  Identities=43%  Similarity=0.829  Sum_probs=115.8

Q ss_pred             CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294           12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN   91 (314)
Q Consensus        12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN   91 (314)
                      +.+.++++|++|++.|+|+.|||||+++|+|||+|+|||||++||||||+| +|||+||||+||.|++++|+.|+. +||
T Consensus        17 q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~-~gN   94 (386)
T 3lju_X           17 QGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS-HGN   94 (386)
T ss_dssp             HHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH-SSH
T ss_pred             hhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH-hcc
Confidence            345678999999999999999999999999999999999999999999999 999999999999999999999976 599


Q ss_pred             hHHHHHHhhhCCCCCCCCCCCCCHHHHHHHHhcccccceeecccc
Q 021294           92 IAVNKKYEAYTPGNLKKPSPNSFIDERSDFIRRKYEKLEFFNFDE  136 (314)
Q Consensus        92 ~~~n~~~e~~~~~~~~kp~~~~~~~~r~~fI~~KY~~~~f~~~~~  136 (314)
                      ..+|++||+++|....+|.|+++...|++||++||++++|+.++.
T Consensus        95 ~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~  139 (386)
T 3lju_X           95 DAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK  139 (386)
T ss_dssp             HHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred             hHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence            999999999999888899999999999999999999999997544

>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}

Probab=100.00  E-value=4.1e-37  Score=245.27  Aligned_cols=123  Identities=31%  Similarity=0.567  Sum_probs=92.9

Q ss_pred             CCCCCCCCCCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHH
Q 021294            4 QHANSDPKNVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVD   83 (314)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~   83 (314)
                      ++-...|-.++.++++|++|++.|+|+.|||||+++|+|||+|||||||++||||||.||+|||+||||+||+|+++||+
T Consensus        13 ~~~~~~~m~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~   92 (147)
T 3dwd_A           13 GLVPRGSMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELE   92 (147)
T ss_dssp             ---------CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHH
T ss_pred             CcccCCCCCCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHH
Confidence            34455566778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcchhHHHHHHhhhCCCCCCCCCCCCCHHHH---------HHHHhcccccceee
Q 021294           84 ALAEMGGNIAVNKKYEAYTPGNLKKPSPNSFIDER---------SDFIRRKYEKLEFF  132 (314)
Q Consensus        84 ~~~~~gGN~~~n~~~e~~~~~~~~kp~~~~~~~~r---------~~fI~~KY~~~~f~  132 (314)
                      .|+. |||.++|++||+...     ..|..+..+|         ++-|.++++.+.|.
T Consensus        93 ~m~~-~GN~~an~~~ea~~~-----~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~  144 (147)
T 3dwd_A           93 KMKA-GGNAKFREFLESQED-----YDPCWSLQEKYNSRAAALFRDKVVALAEGREWS  144 (147)
T ss_dssp             HHHH-CCHHHHHHHHHTSTT-----CCTTCCHHHHHTSHHHHHHHHHHHHHHC-----
T ss_pred             HHHH-HhhHHHHHHHHhCCC-----CCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCC
Confidence            9965 799999999998631     1233444443         34566666666665

>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=100.00  E-value=2.3e-37  Score=249.39  Aligned_cols=90  Identities=38%  Similarity=0.753  Sum_probs=85.1

Q ss_pred             CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC-CCHHHHHHHHHhcchh
Q 021294           14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGGNI   92 (314)
Q Consensus        14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~v~~~~~~gGN~   92 (314)
                      +..+++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||.||+|||+||||+||. |+++||+.|+ .|||.
T Consensus        14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~-~~GN~   92 (149)
T 2crw_A           14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQ-VGGNA   92 (149)
T ss_dssp             HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHH-TTCHH
T ss_pred             HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHH-HHhhH
Confidence            457899999999999999999999999999999999999999999999999999999999995 9999999995 67999


Q ss_pred             HHHHHHhhhCCC
Q 021294           93 AVNKKYEAYTPG  104 (314)
Q Consensus        93 ~~n~~~e~~~~~  104 (314)
                      ++|++||++.+.
T Consensus        93 ~an~~~e~~~~~  104 (149)
T 2crw_A           93 SASSFFHQHGCS  104 (149)
T ss_dssp             HHHHHHHHHCCC
T ss_pred             HHHHHHHhcCCC
Confidence            999999999853

>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.6e-35  Score=236.34  Aligned_cols=90  Identities=39%  Similarity=0.795  Sum_probs=83.6

Q ss_pred             CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCC-CCHHHHHHHHHhcc
Q 021294           12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE-WTNEQVDALAEMGG   90 (314)
Q Consensus        12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~-w~~~~v~~~~~~gG   90 (314)
                      +.+..+++++.|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+|+|++||. |+++||+.|+ .||
T Consensus        20 ~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~-~~G   98 (144)
T 2p57_A           20 NKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQ-VGG   98 (144)
T ss_dssp             CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHH-HCC
T ss_pred             CHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHH-HhC
Confidence            34456788888999999999999999999999999999999999999999999999999999996 9999999995 579


Q ss_pred             hhHHHHHHhhhC
Q 021294           91 NIAVNKKYEAYT  102 (314)
Q Consensus        91 N~~~n~~~e~~~  102 (314)
                      |.++|++||+..
T Consensus        99 N~~an~~~e~~g  110 (144)
T 2p57_A           99 NANATAFFRQHG  110 (144)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcC
Confidence            999999999884

>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.4e-35  Score=235.80  Aligned_cols=91  Identities=42%  Similarity=0.822  Sum_probs=85.0

Q ss_pred             CcHHHHHHHHHcC-CCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294           14 SGPRARLENLLRQ-PGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI   92 (314)
Q Consensus        14 ~~~~~~~~~l~~~-~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~   92 (314)
                      +.+++.|++|++. |+|+.|||||+++|+|||++||||||++|||+||.||+|||+||||+||.|++++|+.|+ .|||.
T Consensus         6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~-~~GN~   84 (163)
T 3sub_A            6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYID-KGGNK   84 (163)
T ss_dssp             HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHH-HCCHH
T ss_pred             HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHH-hhCHH
Confidence            3578999999986 899999999999999999999999999999999999999999999999999999999996 57999


Q ss_pred             HHHHHHhhhCCCC
Q 021294           93 AVNKKYEAYTPGN  105 (314)
Q Consensus        93 ~~n~~~e~~~~~~  105 (314)
                      ++|++||++.+..
T Consensus        85 ~an~~~e~~g~~~   97 (163)
T 3sub_A           85 KCQTYLENYGISD   97 (163)
T ss_dssp             HHHHHHHHTTCTT
T ss_pred             HHHHHHHHcCCcc
Confidence            9999999987643

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=100.00  E-value=3e-33  Score=255.71  Aligned_cols=120  Identities=36%  Similarity=0.644  Sum_probs=112.0

Q ss_pred             CCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchh
Q 021294           13 VSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNI   92 (314)
Q Consensus        13 ~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~   92 (314)
                      .+.++++++.|++.|+|+.|||||+++|+|+|+|+|+|+|++|||+||.||+|||+|+|++||.|+++++..|.. +||.
T Consensus        26 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~-~GN~  104 (301)
T 2b0o_E           26 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGNT  104 (301)
T ss_dssp             -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH-CCHH
T ss_pred             HHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH-cCCH
Confidence            345788899999999999999999999999999999999999999999999999999999999999999999976 5899


Q ss_pred             HHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeec
Q 021294           93 AVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        93 ~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      .+|.+||+.++.. ..+|.+.++...|++||++||++++|..
T Consensus       105 ~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~  146 (301)
T 2b0o_E          105 SFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFAR  146 (301)
T ss_dssp             HHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSC
T ss_pred             HHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhc
Confidence            9999999999875 6799999999999999999999999985

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=100.00  E-value=2.5e-33  Score=253.39  Aligned_cols=119  Identities=36%  Similarity=0.668  Sum_probs=111.9

Q ss_pred             CcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhH
Q 021294           14 SGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIA   93 (314)
Q Consensus        14 ~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~   93 (314)
                      +.+++++++|++.|+|+.|||||+++|+|+|+|||+|+|++|||+||.||+|||+|||++||.|+++++..|.. +||..
T Consensus         2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~-~GN~~   80 (278)
T 1dcq_A            2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAG   80 (278)
T ss_dssp             -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHH
T ss_pred             chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHH-cCcHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999998865 59999


Q ss_pred             HHHHHhhhCCCCC-CCCCCCCCHHHHHHHHhcccccceeec
Q 021294           94 VNKKYEAYTPGNL-KKPSPNSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        94 ~n~~~e~~~~~~~-~kp~~~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      +|++||+.+|... .+|.|.+.+..+++||++||..++|..
T Consensus        81 ~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~  121 (278)
T 1dcq_A           81 FNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR  121 (278)
T ss_dssp             HHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccc
Confidence            9999999998654 489999999999999999999999986

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.97  E-value=7.7e-33  Score=269.39  Aligned_cols=122  Identities=35%  Similarity=0.623  Sum_probs=113.0

Q ss_pred             CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294           12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN   91 (314)
Q Consensus        12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN   91 (314)
                      .++.++++++.|++.|+|+.|||||+++|+|+|+|+|||+|++|||+||+||+|||+|||++||.|+++++.+|.. +||
T Consensus         6 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~-~GN   84 (497)
T 3lvq_E            6 PHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN-MGN   84 (497)
T ss_dssp             --CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTT-CCH
T ss_pred             hHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHH-Hhh
Confidence            4566899999999999999999999999999999999999999999999999999999999999999999999965 589


Q ss_pred             hHHHHHHhhhCCCC-CCCCCCCCCHHHHHHHHhcccccceeecc
Q 021294           92 IAVNKKYEAYTPGN-LKKPSPNSFIDERSDFIRRKYEKLEFFNF  134 (314)
Q Consensus        92 ~~~n~~~e~~~~~~-~~kp~~~~~~~~r~~fI~~KY~~~~f~~~  134 (314)
                      ..+|.+||+.+|.. ..+|.+.+....|++||++||++++|...
T Consensus        85 ~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~  128 (497)
T 3lvq_E           85 TSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR  128 (497)
T ss_dssp             HHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCC
T ss_pred             HHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhccccccc
Confidence            99999999999854 47888999999999999999999999864

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.96  E-value=3.9e-29  Score=231.21  Aligned_cols=91  Identities=36%  Similarity=0.750  Sum_probs=84.6

Q ss_pred             CCCcHHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcch
Q 021294           12 NVSGPRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGN   91 (314)
Q Consensus        12 ~~~~~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN   91 (314)
                      .++.+++.|++|++.|+|+.|||||+++|+|||+|||||+|+.|||+||.||+|||+|||++||+|++++|+.|+. +||
T Consensus        20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~-~gN   98 (329)
T 3o47_A           20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKA-GGN   98 (329)
T ss_dssp             ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHH-CCH
T ss_pred             CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHH-hCc
Confidence            4577899999999999999999999999999999999999999999999999999999999999999999999965 699


Q ss_pred             hHHHHHHhhhCC
Q 021294           92 IAVNKKYEAYTP  103 (314)
Q Consensus        92 ~~~n~~~e~~~~  103 (314)
                      ..+|++||+...
T Consensus        99 ~~~n~~~e~~~~  110 (329)
T 3o47_A           99 AKFREFLESQED  110 (329)
T ss_dssp             HHHHHHHHTCSS
T ss_pred             HHHHHHHHhcCC
Confidence            999999998753

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.73  E-value=1.4e-17  Score=133.42  Aligned_cols=98  Identities=32%  Similarity=0.574  Sum_probs=89.9

Q ss_pred             cceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294          200 AMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  278 (314)
Q Consensus       200 ~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~  278 (314)
                      ......+.|.|+|++|++|+..+.. .+||||++.++.++.+|+++++++||.|||.|.|.+......|.|+|||++.++
T Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~d~~~   86 (133)
T 2ep6_A            7 GDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDK   86 (133)
T ss_dssp             CSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTE
T ss_pred             cccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEECCCCC
Confidence            4566789999999999999998876 899999999999999999999999999999999999876678999999999999


Q ss_pred             CCceeEEEEEeCccccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~  297 (314)
                      ++++||++.++|.++..+.
T Consensus        87 ~~~~lG~~~i~l~~l~~~~  105 (133)
T 2ep6_A           87 PPDFLGKVAIPLLSIRDGQ  105 (133)
T ss_dssp             EEEECCBCEEEGGGCCSSC
T ss_pred             CCCeeEEEEEEHHHccCCC
Confidence            9999999999999997654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.73  E-value=5e-17  Score=132.47  Aligned_cols=96  Identities=32%  Similarity=0.570  Sum_probs=85.4

Q ss_pred             hcceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCC
Q 021294          199 VAMVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTF  277 (314)
Q Consensus       199 ~~~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~  277 (314)
                      .++..+.|.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+......|.|+|||++..
T Consensus        10 ~~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~   89 (148)
T 3kwu_A           10 DGTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDD   89 (148)
T ss_dssp             -----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCS
T ss_pred             ccccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCC
Confidence            35667889999999999999998876 89999999999999999999999999999999999977668899999999986


Q ss_pred             -----------CCCceeEEEEEeCcccc
Q 021294          278 -----------TTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       278 -----------~~dd~iG~~~v~l~~l~  294 (314)
                                 +.+++||++.++|.++.
T Consensus        90 ~~~~~~~~~~~~~~~~lG~~~i~l~~l~  117 (148)
T 3kwu_A           90 IKSRVKQRFKRESDDFLGQTIIEVRTLS  117 (148)
T ss_dssp             HHHHHHTTTSSCSSEEEEEEEEEGGGCC
T ss_pred             ccccccccccCCCCccEEEEEEEHHHCc
Confidence                       88999999999999984

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.72  E-value=1.2e-17  Score=137.64  Aligned_cols=97  Identities=18%  Similarity=0.367  Sum_probs=85.4

Q ss_pred             hcceeeeeEEEEEEEeeecCCCCCC-----------CCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCc
Q 021294          199 VAMVEFVGLIKVNVVKGTNLAVRDV-----------MTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPP  266 (314)
Q Consensus       199 ~~~~e~~g~L~V~v~~a~~L~~~d~-----------~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~  266 (314)
                      .++....|.|.|+|++|++|+..|.           ..+||||++.++.+. .+|+++++++||.|||.|.|.+.. ...
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~  100 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH  100 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred             chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence            4567888999999999999998772           258999999998866 699999999999999999999865 358


Q ss_pred             EEEEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294          267 LKVLVYDKDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       267 L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      |.|+|||++.+++|++||.+.|+|.++..+
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~  130 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRT  130 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHH
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcc
Confidence            999999999999999999999999999865

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.70  E-value=2.3e-17  Score=132.47  Aligned_cols=95  Identities=32%  Similarity=0.530  Sum_probs=87.3

Q ss_pred             ceeeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294          201 MVEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  278 (314)
Q Consensus       201 ~~e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~  278 (314)
                      .....+.|.|+|++|++|+..+.. .+||||++.++.+..+|++++ +++||.|||.|.|.+......|.|+|||++.++
T Consensus         5 ~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~~~   84 (136)
T 1wfj_A            5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGT   84 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCT
T ss_pred             CCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCCCC
Confidence            345779999999999999998876 899999999999999999998 899999999999999877788999999999999


Q ss_pred             CCceeEEEEEeCccccc
Q 021294          279 TDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~  295 (314)
                      +|++||++.++|.++..
T Consensus        85 ~d~~lG~~~i~l~~l~~  101 (136)
T 1wfj_A           85 EDDAVGEATIPLEPVFV  101 (136)
T ss_dssp             TTCCSEEEEEESHHHHH
T ss_pred             CCceEEEEEEEHHHhcc
Confidence            99999999999999854

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=8.9e-17  Score=129.67  Aligned_cols=97  Identities=25%  Similarity=0.436  Sum_probs=86.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcCCCCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKDTFTT  279 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d~~~~  279 (314)
                      ..|.|.|+|++|++|+..+...+||||++.++.++.+|+++++++||.|||.|.|.+..    ....|.|+|||++.++.
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~~   84 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIGQ   84 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSSS
T ss_pred             CCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCCC
Confidence            35799999999999998877778999999999999999999999999999999999864    35789999999999999


Q ss_pred             CceeEEEEEeCcccccccccc
Q 021294          280 DDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       280 dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      +++||++.++|.++..+....
T Consensus        85 ~~~lG~~~i~l~~l~~~~~~~  105 (140)
T 2dmh_A           85 NKLIGTATVALKDLTGDQSRS  105 (140)
T ss_dssp             CCCCEEEEEEGGGTCSSSCEE
T ss_pred             CceEEEEEEEHHHhccCCCce
Confidence            999999999999997665433

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.69  E-value=6.4e-17  Score=130.12  Aligned_cols=94  Identities=20%  Similarity=0.455  Sum_probs=83.4

Q ss_pred             eeeeeEEEEEEEeeecCCCCCCC-C-----------CCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcEE
Q 021294          202 VEFVGLIKVNVVKGTNLAVRDVM-T-----------SDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPLK  268 (314)
Q Consensus       202 ~e~~g~L~V~v~~a~~L~~~d~~-~-----------~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~  268 (314)
                      ....|.|.|+|++|++|+..+.. .           +||||++.++.+. .+|+++.+++||.|||.|.|.+... ..|.
T Consensus         2 ~~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~   80 (136)
T 1gmi_A            2 VVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIE   80 (136)
T ss_dssp             CCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEE
T ss_pred             cccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEE
Confidence            34678999999999999987743 3           8999999998765 6899999999999999999998655 7899


Q ss_pred             EEEEEcCCCCCCceeEEEEEeCcccccc
Q 021294          269 VLVYDKDTFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       269 i~v~d~d~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      |+|||++.+++|++||.+.++|.++...
T Consensus        81 ~~V~d~d~~~~dd~iG~~~i~l~~l~~~  108 (136)
T 1gmi_A           81 LAVFHDAPIGYDDFVANCTIQFEELLQN  108 (136)
T ss_dssp             EEEEECCSSSSCEEEEEEEEEHHHHTST
T ss_pred             EEEEeCCCCCCCCEEEEEEEEHHHhccc
Confidence            9999999999999999999999998864

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.68  E-value=1.9e-16  Score=127.08  Aligned_cols=98  Identities=19%  Similarity=0.307  Sum_probs=83.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+. +.. .+||||++.+     ...+.+|+++++++||.|||+|.|. +..   ....|.|+|||
T Consensus        18 ~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d   96 (134)
T 2b3r_A           18 RNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLS   96 (134)
T ss_dssp             ETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEE
T ss_pred             cCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEE
Confidence            44799999999999997 444 8999999999     4567899999999999999999999 653   45789999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccccccCc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      ++.++++++||++.++|.++..+.....|
T Consensus        97 ~d~~~~~~~lG~~~i~l~~l~~~~~~~~W  125 (134)
T 2b3r_A           97 AESLRENFFLGGITLPLKDFNLSKETVKW  125 (134)
T ss_dssp             CCSSSCCEEEEEEEEEGGGSCTTSCEEEE
T ss_pred             CCCCCCCcEEEEEEEEhhhccCCCCccee
Confidence            99999999999999999999765544333

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.68  E-value=2.8e-16  Score=131.91  Aligned_cols=96  Identities=33%  Similarity=0.643  Sum_probs=79.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~  276 (314)
                      ..|.|.|+|++|++|+..+.. .+||||++.++.      +.++|+++++++||.|+|.|.|.+......|.|+|||++.
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~d~   85 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDENR   85 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEECC-
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEECCC
Confidence            458999999999999998876 899999999964      6789999999999999999999998766789999999999


Q ss_pred             CCCCceeEEEEEeCccccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~  299 (314)
                      ++.+++||++.++|..+......
T Consensus        86 ~~~d~~lG~~~i~l~~l~~~~~~  108 (176)
T 3m7f_B           86 LTRDDFLGQVDVPLYPLPTENPR  108 (176)
T ss_dssp             ---CEEEEEEEEESCSCCBC---
T ss_pred             CCCCcEEEEEEEEHHHccccCCc
Confidence            99999999999999999876544

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.2e-16  Score=126.63  Aligned_cols=102  Identities=26%  Similarity=0.400  Sum_probs=86.3

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEcC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~d  275 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+.   .+..+|+++++++||.|||.|.|.+..    ....|.|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            457899999999999998876 89999999993   467899999999999999999998532    3577999999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      .++++++||++.++|.++..+.... .|..+
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~~~~-~W~~L  133 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQMQT-FWKDL  133 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTSCEE-EEECC
T ss_pred             CCCCCcEEEEEEEEhhhhcCCCCcc-EEEEC
Confidence            9999999999999999998665333 34433

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.67  E-value=3.8e-16  Score=127.94  Aligned_cols=96  Identities=35%  Similarity=0.670  Sum_probs=81.5

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcC
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD  275 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d  275 (314)
                      ...+.|.|+|++|++|+..+.. .+||||++.++.      ...+|+++++++||.|||.|.|.+......|.|+|||++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d~d   96 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFDEN   96 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEECC
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEECC
Confidence            3457999999999999988876 899999999963      578999999999999999999999876678999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      .++++++||++.++|.++..+..
T Consensus        97 ~~~~d~~iG~~~i~l~~l~~~~~  119 (153)
T 3b7y_A           97 RLTRDDFLGQVDVPLYPLPTENP  119 (153)
T ss_dssp             SSSCCEEEEEEEEECCSCCBCCT
T ss_pred             CCcCCCeeEEEEEEHHHcccCCC
Confidence            99999999999999999986654

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.67  E-value=2.3e-16  Score=129.26  Aligned_cols=100  Identities=28%  Similarity=0.447  Sum_probs=86.2

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+   +.+..+|+++++++||.|||.|.|.+..   ....|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            347899999999999998876 8999999999   4567899999999999999999998854   35789999999999


Q ss_pred             CCCCceeEEEEEeCccccccccccCcc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      ++++++||++.++|.++..+.....|.
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~~~W~  146 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVTEEWR  146 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCEEEEE
T ss_pred             CCCCcEEEEEEEEchhccCCCCcceEE
Confidence            999999999999999997655444343

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.66  E-value=3.3e-16  Score=131.34  Aligned_cols=93  Identities=19%  Similarity=0.403  Sum_probs=82.6

Q ss_pred             eeeEEEEEEEeeecCC-CCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294          204 FVGLIKVNVVKGTNLA-VRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~-~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~  282 (314)
                      ..+.|.|+|++|++|+ ..+...+||||++.++.+..+|+++++++||.|||.|.|.+.. ...|.|+|||++.++.+++
T Consensus        34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~-~~~L~~~V~D~d~~~~dd~  112 (173)
T 2nq3_A           34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVL  112 (173)
T ss_dssp             CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEE
T ss_pred             CceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC-CCEEEEEEEECCCCCCCce
Confidence            4578999999999999 5555579999999999999999999999999999999999864 6789999999999999999


Q ss_pred             eEEEEEeCccccccc
Q 021294          283 MGDAEIDIQPLVTAA  297 (314)
Q Consensus       283 iG~~~v~l~~l~~~~  297 (314)
                      ||++.++|.++..+.
T Consensus       113 lG~~~i~l~~l~~~~  127 (173)
T 2nq3_A          113 LGTAALDIYETLKSN  127 (173)
T ss_dssp             EEEEEEEHHHHHHHT
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999987543

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.66  E-value=2e-16  Score=125.25  Aligned_cols=99  Identities=24%  Similarity=0.421  Sum_probs=84.2

Q ss_pred             eeEEEEEEEeeecCCCC---CC-CCCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEec-CCCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVR---DV-MTSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIP-ENIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~---d~-~~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~-~~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+..   +. ..+||||++.++.   +.++|+++++++||.|||.|.|.+. .....|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            47899999999999984   43 3789999999974   7889999999999999999999995 356789999999998


Q ss_pred             CCCCceeEEEEEeCccccccccccCccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      ++ +++||++.++|.++..+.....|..
T Consensus        82 ~~-~~~iG~~~i~l~~l~~~~~~~~~~~  108 (126)
T 1rlw_A           82 VM-DETLGTATFTVSSMKVGEKKEVPFI  108 (126)
T ss_dssp             SC-CEEEEEEEEEGGGSCTTCEEEEEEE
T ss_pred             CC-CceeEEEEEEHHHccCCCcEEEEEE
Confidence            84 8999999999999986655544433

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.66  E-value=2.1e-16  Score=129.70  Aligned_cols=93  Identities=19%  Similarity=0.417  Sum_probs=81.5

Q ss_pred             eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcC
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKD  275 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d  275 (314)
                      ...+.|.|+|++|++|+..+...+||||++.+     .....+|+++++++||.|||.|.|.+.  .....|.|+|||++
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            34579999999999999988558999999999     345789999999999999999999983  33456999999999


Q ss_pred             CCCC-CceeEEEEEeCccccc
Q 021294          276 TFTT-DDFMGDAEIDIQPLVT  295 (314)
Q Consensus       276 ~~~~-dd~iG~~~v~l~~l~~  295 (314)
                      .+++ +++||++.++|.++..
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~  124 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLT  124 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC
T ss_pred             CCCCCCcEEEEEEEEHHHhcC
Confidence            9887 9999999999999975

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.66  E-value=7e-16  Score=123.24  Aligned_cols=88  Identities=22%  Similarity=0.431  Sum_probs=79.0

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCC---
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT---  279 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~--~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~---  279 (314)
                      ..|.|+|++|++|+..+.. .+||||++.++.  +..+|+++++++||.|||.|.|.+... ..|.|+|||++.+++   
T Consensus         5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~l~~~v~d~d~~~~~~~   83 (132)
T 3pyc_A            5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT-DSITISVWNHKKIHKKQG   83 (132)
T ss_dssp             EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT-CCEEEEEEEGGGTTSSTT
T ss_pred             EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC-CEEEEEEEECCCCCCCCC
Confidence            5789999999999998876 899999999964  789999999999999999999998764 359999999999876   


Q ss_pred             CceeEEEEEeCcccc
Q 021294          280 DDFMGDAEIDIQPLV  294 (314)
Q Consensus       280 dd~iG~~~v~l~~l~  294 (314)
                      |++||++.+++.++.
T Consensus        84 d~~lG~~~i~l~~l~   98 (132)
T 3pyc_A           84 AGFLGCVRLLSNAIS   98 (132)
T ss_dssp             TTEEEEEEECHHHHH
T ss_pred             CCceEEEEEeHHHhh
Confidence            899999999998884

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.66  E-value=2.8e-16  Score=127.27  Aligned_cols=99  Identities=28%  Similarity=0.455  Sum_probs=86.0

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+   +.+..+|+++++++||.|||+|.|.+..   ....|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            347899999999999998876 8999999999   5568899999999999999999999853   34789999999999


Q ss_pred             CCCCceeEEEEEeCccccccccccCc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      ++.+++||++.++|.++..+.....|
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~~~W  137 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVTEEW  137 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCEEEE
T ss_pred             CCCCceEEEEEEEHHHccCCCCcceE
Confidence            99999999999999999766544433

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.66  E-value=3.9e-16  Score=125.67  Aligned_cols=101  Identities=27%  Similarity=0.423  Sum_probs=85.7

Q ss_pred             eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.  ..+||||++.+.   .+..+|+++++++||.|||.|.|. +..   ....|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            34789999999999999886  378999999994   478999999999999999999995 654   236899999999


Q ss_pred             CCCCCCceeEEEEEeCccccccccccCccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAARACETPI  304 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~  304 (314)
                      +.++++++||++.++|.++..+.....++.
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~  129 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIELSEGKMLMNR  129 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCCTTCCEEEEE
T ss_pred             CCCCCCcEEEEEEEehhHccCCCCcchhhh
Confidence            999999999999999999976654444433

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=131.95  Aligned_cols=92  Identities=17%  Similarity=0.195  Sum_probs=81.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC------eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH------QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~------~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d  273 (314)
                      ..+.|.|.|++|++|+.++.. .+||||++.+..      .+++|+++++++||+|||+|.|.+..   ....|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            347899999999999998876 899999999954      27899999999999999999999864   24679999999


Q ss_pred             cCCCCCCceeEEEEEeCccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~  295 (314)
                      ++.++++++||++.++|.++..
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~~  142 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVCR  142 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSCT
T ss_pred             CCCCCCCcEEEEEEEEHHHccC
Confidence            9999999999999999999853

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.64  E-value=3.5e-16  Score=126.52  Aligned_cols=95  Identities=28%  Similarity=0.546  Sum_probs=83.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEE-ecCC---CCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS-IPEN---IPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~-v~~~---~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||.|.|. +...   ...|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            447899999999999998876 899999999964     68899999999999999999998 5431   3689999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      ++.++++++||++.++|.++..+..
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~~  131 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQR  131 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTCC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCCc
Confidence            9999999999999999999976553

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.64  E-value=4.2e-16  Score=125.67  Aligned_cols=106  Identities=18%  Similarity=0.381  Sum_probs=87.1

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEe-cC---CCCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSI-PE---NIPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v-~~---~~~~L~i~v~d~  274 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+     +.+..+|+++++++||.|||.|.|.+ ..   ....|.|+|||+
T Consensus        20 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~   99 (141)
T 1v27_A           20 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   99 (141)
T ss_dssp             TTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEB
T ss_pred             CCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEEC
Confidence            37899999999999998876 7999999998     45788999999999999999999995 32   346899999999


Q ss_pred             CCCCC--CceeEEEEEeCccccccccccCcccccCCccCC
Q 021294          275 DTFTT--DDFMGDAEIDIQPLVTAARACETPISMSPCNLG  312 (314)
Q Consensus       275 d~~~~--dd~iG~~~v~l~~l~~~~~~~~~~~~~~~~~~g  312 (314)
                      +.++.  +++||.+.++|.++....  ...|..+....-|
T Consensus       100 d~~~~~~~~~lG~~~i~l~~l~~~~--~~~W~~L~~~~~g  137 (141)
T 1v27_A          100 ARVREEESEFLGEILIELETALLDD--EPHWYKLQTHDSG  137 (141)
T ss_dssp             CSSSSCCBCCCEEEEEEGGGCCCSS--EEEEEECBCCSSC
T ss_pred             CCCcCCCCceEEEEEEEccccCCCC--CCceEECcccccC
Confidence            99987  999999999999987543  3345444444333

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.64  E-value=3.3e-16  Score=127.82  Aligned_cols=92  Identities=37%  Similarity=0.507  Sum_probs=82.7

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecCC--CCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPEN--IPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~~--~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+.     ....+|+++++++||.|||+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            46899999999999998876 89999999995     4678999999999999999999998652  3579999999999


Q ss_pred             CCCCceeEEEEEeCcccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~  296 (314)
                      ++++++||++.++|.++..+
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~  129 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKA  129 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC
T ss_pred             CCCCCEEEEEEEEHHHhCcC
Confidence            99999999999999998765

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.64  E-value=3.8e-16  Score=130.64  Aligned_cols=100  Identities=26%  Similarity=0.371  Sum_probs=85.6

Q ss_pred             eeeEEEEEEEeeecCCCCCC--CCCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEE-EcC
Q 021294          204 FVGLIKVNVVKGTNLAVRDV--MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVY-DKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~--~~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~-d~d  275 (314)
                      ..+.|.|+|++|++|+..+.  ..+||||++.+..     ...+|+++++++||+|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            35799999999999999884  3899999999843     378999999999999999999998766678999999 999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCcc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      .++++++||++.++|.++..+.....|.
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~~~W~  135 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMVIGWY  135 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCEEEEE
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCcceeE
Confidence            9999999999999999997554443333

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6.3e-16  Score=125.82  Aligned_cols=104  Identities=21%  Similarity=0.312  Sum_probs=85.1

Q ss_pred             eeeEEEEEEEeeecCCCC-CC-------CCCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEE
Q 021294          204 FVGLIKVNVVKGTNLAVR-DV-------MTSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKV  269 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~-d~-------~~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i  269 (314)
                      ..+.|.|+|++|++|+.. +.       ..+||||++.+.   .+..+|+++++++||.|||+|.|.+..   ....|.|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            347999999999999974 21       278999999995   467899999999999999999999864   2357999


Q ss_pred             EEEEcCCCCCCceeEEEEEeCccccccccccCcccccCC
Q 021294          270 LVYDKDTFTTDDFMGDAEIDIQPLVTAARACETPISMSP  308 (314)
Q Consensus       270 ~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~~  308 (314)
                      +|||++.++++++||++.++|.++...... .+|..+..
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~-~~w~~L~~  141 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLVKGG-HWWKALIP  141 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTTTCC-CEEECCBC
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCCCCc-cEEEEeec
Confidence            999999999999999999999999755433 34544443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.63  E-value=8.2e-16  Score=122.14  Aligned_cols=92  Identities=20%  Similarity=0.441  Sum_probs=76.9

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC----CCCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE----NIPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~~L~i~v~d~  274 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+     +....+|+++++++||.|||.|.|.+..    ....|.|+|||+
T Consensus        17 ~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~   96 (129)
T 2bwq_A           17 GHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQ   96 (129)
T ss_dssp             TTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEEC
Confidence            47899999999999998876 7899999999     4578899999999999999999999522    346899999999


Q ss_pred             CCCCC--CceeEEEEEeCcccccc
Q 021294          275 DTFTT--DDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       275 d~~~~--dd~iG~~~v~l~~l~~~  296 (314)
                      +.++.  +++||++.++|.++...
T Consensus        97 d~~~~~~~~~lG~~~i~l~~l~~~  120 (129)
T 2bwq_A           97 ARVREEESEFLGEILIELETALLD  120 (129)
T ss_dssp             -------CEEEEEEEEEGGGCCCS
T ss_pred             CcCcCcCCceeEEEEEEccccCCC
Confidence            99987  99999999999998754

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.63  E-value=3.4e-16  Score=127.61  Aligned_cols=99  Identities=27%  Similarity=0.422  Sum_probs=84.5

Q ss_pred             eeEEEEEEEeeecCCCCC-CC-CCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294          205 VGLIKVNVVKGTNLAVRD-VM-TSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK  274 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d-~~-~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~  274 (314)
                      .+.|.|+|++|++|+..+ .. .+||||++.+.     ....+|+++++++||.|||.|.|.+...   ...|.|+|||+
T Consensus        22 ~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~  101 (148)
T 3fdw_A           22 TQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHH  101 (148)
T ss_dssp             TTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEE
T ss_pred             CCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEEC
Confidence            478999999999999887 33 89999999995     3478999999999999999999998653   34699999999


Q ss_pred             CCCCCCceeEEEEEeCccccccccccCcc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAARACETP  303 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~~~~~~~  303 (314)
                      +.++++++||++.++|.++..+.....|.
T Consensus       102 d~~~~~~~iG~~~i~l~~l~~~~~~~~W~  130 (148)
T 3fdw_A          102 GRFGRNTFLGEAEIQMDSWKLDKKLDHCL  130 (148)
T ss_dssp             CGGGCEEEEEEEEEEHHHHHHHCCSEEEE
T ss_pred             CCCcCCcEEEEEEEEcccccccCCccceE
Confidence            99999999999999999997655444333

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.63  E-value=2.7e-15  Score=120.91  Aligned_cols=99  Identities=17%  Similarity=0.250  Sum_probs=80.4

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---C-eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---H-QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~-~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++   .+.. .+||||++.+.   . ...+|+++++++||.|||+|.|.+...   ...|.|+|||++.
T Consensus        25 ~~~L~V~v~~a~~---~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           25 KAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTEEEEEEEEEEC---CCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCEEEEEEEEEEc---CCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCC
Confidence            4689999999993   4544 89999999993   2 357999999999999999999998652   4679999999999


Q ss_pred             CCCCceeEEEEEeCccccccccccCcccccC
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACETPISMS  307 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~  307 (314)
                      ++++++||++.++|.++..+.... .|..+.
T Consensus       102 ~~~dd~lG~~~i~l~~l~~~~~~~-~W~~L~  131 (138)
T 1wfm_A          102 FSRHSVAGELRLGLDGTSVPLGAA-QWGELK  131 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTCC-EEEECC
T ss_pred             CCCCcEEEEEEEEcccccCccccc-ceeeCc
Confidence            999999999999999986444333 344333

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.9e-15  Score=122.23  Aligned_cols=102  Identities=25%  Similarity=0.226  Sum_probs=83.2

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC-----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG-----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~-----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+..+...+||||++.+.     ....+|+++++++||.|||.|.|.+..   ....|.|+|||++.
T Consensus        23 ~~~L~v~v~~a~~L~~~d~~g~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           23 RNKLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             TTEEEEEEEEEECCCCSSTTCCCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCC
Confidence            4789999999999998875449999999993     267899999999999999999999854   23589999999998


Q ss_pred             CCC--CceeEEEEEeCccccccccccCccccc
Q 021294          277 FTT--DDFMGDAEIDIQPLVTAARACETPISM  306 (314)
Q Consensus       277 ~~~--dd~iG~~~v~l~~l~~~~~~~~~~~~~  306 (314)
                      ++.  +++||.+.++|.++..+.....|..+.
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~  134 (142)
T 2dmg_A          103 FLSKDKGLLGKVLVALASEELAKGWTQWYDLT  134 (142)
T ss_dssp             SSCCSCCCCEEEEEECCCSTTTTCBCCBCCCB
T ss_pred             ccccCCcEEEEEEEecccccccccccceeecc
Confidence            764  579999999999987655444444333

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.62  E-value=3.3e-16  Score=126.63  Aligned_cols=96  Identities=29%  Similarity=0.530  Sum_probs=82.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCe--------------EeeeeeecCCCCCcccceeEEE-ecC---CCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQ--------------TVKTRVIKSNLNPVWNESLMLS-IPE---NIP  265 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~--------------~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~  265 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+...              ..+|+++++++||.|||.|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            57899999999999998876 8999999999652              4789999999999999999997 542   456


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCcccccccccc
Q 021294          266 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       266 ~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      .|.|+|||++.++++++||.+.++|.++..+....
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~  131 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTP  131 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCCC
Confidence            89999999999999999999999999987654333

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.62  E-value=9e-16  Score=123.19  Aligned_cols=94  Identities=34%  Similarity=0.471  Sum_probs=81.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCC---CcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENI---PPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~---~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||.|.|.+....   ..|.|+|||+
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~   93 (138)
T 3n5a_A           14 SANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDK   93 (138)
T ss_dssp             TTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEEC
T ss_pred             CCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEEC
Confidence            347899999999999998876 899999999953     4789999999999999999999986533   5799999999


Q ss_pred             CCCCCCceeEEEEEeCccccccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      +.++++++||++.++|.++..+.
T Consensus        94 ~~~~~~~~lG~~~i~l~~~~~~~  116 (138)
T 3n5a_A           94 DKLSRNDVIGKIYLSWKSGPGEV  116 (138)
T ss_dssp             CSSSCCEEEEEEEESSSSCHHHH
T ss_pred             CCCCCCcEEEEEEEccccCChHH
Confidence            99999999999999999765443

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.61  E-value=3.1e-15  Score=124.31  Aligned_cols=91  Identities=30%  Similarity=0.443  Sum_probs=81.6

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||.|.|.+..   ....|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            457999999999999998876 899999999964     67899999999999999999999864   246899999999


Q ss_pred             CCCCCCceeEEEEEeCcccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~  294 (314)
                      +.++++++||.+.++|..+.
T Consensus       115 d~~~~~~~iG~~~i~l~~~~  134 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKG  134 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCcEEEeEEEecccCC
Confidence            99999999999999999864

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.60  E-value=2.6e-15  Score=123.80  Aligned_cols=90  Identities=31%  Similarity=0.441  Sum_probs=79.7

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+..     ...+|+++++++||.|||.|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            457999999999999998876 899999999942     467999999999999999999998642   35799999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 021294          275 DTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l  293 (314)
                      +.++.+++||.+.++|..+
T Consensus       103 d~~~~~~~iG~~~i~l~~~  121 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNST  121 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCC
T ss_pred             CCCCCCceEEEEEECCCCC
Confidence            9999999999999999865

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.59  E-value=3.2e-15  Score=122.44  Aligned_cols=90  Identities=29%  Similarity=0.406  Sum_probs=75.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CCe---EeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GHQ---TVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~~---~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~  274 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+  +..   +++|+++++++||.|||+|.|.+...   ...|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            347999999999999998866 8999999999  433   67999999999999999999998653   25799999999


Q ss_pred             CCCCCCceeEEEEEeCccc
Q 021294          275 DTFTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l  293 (314)
                      +.++++++||.+.++|...
T Consensus       108 d~~~~~~~lG~~~i~l~~~  126 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATAE  126 (153)
T ss_dssp             CTTSCCEEEEEEEESTTCC
T ss_pred             CCCCCCcEEEEEEECCCCC
Confidence            9999999999999999883

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.58  E-value=4.3e-15  Score=118.84  Aligned_cols=89  Identities=25%  Similarity=0.343  Sum_probs=74.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~  282 (314)
                      .++.|.|+|++|++|+.  ...+||||++.  .+..+|+++. +++||.|||.|.|.+......|.|+|||++ ++.|++
T Consensus         3 ~~~~L~V~V~~A~~l~~--~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   77 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA--QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   77 (131)
T ss_dssp             CCEEEEEEEEEEECSSC--GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEE
T ss_pred             cceEEEEEEEEeECCCC--CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCe
Confidence            45899999999998853  33789999999  3344565554 699999999999999876678999999999 889999


Q ss_pred             eEEEEEeCccccccc
Q 021294          283 MGDAEIDIQPLVTAA  297 (314)
Q Consensus       283 iG~~~v~l~~l~~~~  297 (314)
                      ||++.++|.++....
T Consensus        78 iG~~~i~l~~l~~~~   92 (131)
T 2cjt_A           78 VGTVWIPLRTIRQSN   92 (131)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhhhcC
Confidence            999999999986543

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.53  E-value=1.8e-14  Score=119.96  Aligned_cols=89  Identities=24%  Similarity=0.338  Sum_probs=75.1

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCce
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~  282 (314)
                      .++.|.|+|++|++|+  ....+||||++.  .+..+|+++. +++||.|||.|.|.+......|.|+|||++ ++.|++
T Consensus        12 ~~~~L~V~V~~A~~l~--~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~   86 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG--AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTM   86 (167)
T ss_dssp             CCCEEEEEEEEEECSS--CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCEE
T ss_pred             ceEEEEEEEEEEECCC--CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCce
Confidence            4689999999999885  234789999999  3445676665 599999999999999876678999999999 889999


Q ss_pred             eEEEEEeCccccccc
Q 021294          283 MGDAEIDIQPLVTAA  297 (314)
Q Consensus       283 iG~~~v~l~~l~~~~  297 (314)
                      ||++.++|.++....
T Consensus        87 iG~~~i~L~~l~~~~  101 (167)
T 2cjs_A           87 VGTVWIPLRTIRQSN  101 (167)
T ss_dssp             EEEEEEEGGGSCBCS
T ss_pred             EEEEEEEHHHhcccC
Confidence            999999999986543

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.52  E-value=4.7e-14  Score=137.40  Aligned_cols=88  Identities=25%  Similarity=0.374  Sum_probs=80.4

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEec--CCCCcEEEEEEEcCCCCCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIP--ENIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~--~~~~~L~i~v~d~d~~~~d  280 (314)
                      .++.|.|+|++|++|+. |.. .+||||+|.++.+..+|+++++++||.|||.|.|.+.  .....|+|+|||+|..+.|
T Consensus       392 ~~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~d  470 (540)
T 3nsj_A          392 GLAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDD  470 (540)
T ss_dssp             TEEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCC
T ss_pred             cccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCC
Confidence            37899999999999998 766 8999999999999999999999999999999999863  3567899999999999999


Q ss_pred             ceeEEEEEeCcc
Q 021294          281 DFMGDAEIDIQP  292 (314)
Q Consensus       281 d~iG~~~v~l~~  292 (314)
                      |+||.+.++|..
T Consensus       471 D~LG~~~~~L~~  482 (540)
T 3nsj_A          471 DLLGSCDRSPHS  482 (540)
T ss_dssp             EEEEEEEECCCS
T ss_pred             CEEEEEEEEeeC
Confidence            999999999873

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.50  E-value=7.4e-14  Score=125.62  Aligned_cols=95  Identities=28%  Similarity=0.468  Sum_probs=83.7

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.++   .+..+|+++++++||.|||.|.|.+..   ....|.|+|||++.
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~   96 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR   96 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence            347999999999999998876 89999999995   357899999999999999999999864   34689999999999


Q ss_pred             CCCCceeEEEEEeCcccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      ++.+++||++.++|.++..+..
T Consensus        97 ~~~~~~lG~~~i~l~~l~~~~~  118 (284)
T 2r83_A           97 FSKHDIIGEFKVPMNTVDFGHV  118 (284)
T ss_dssp             SSCCCEEEEEEEEGGGCCCSSC
T ss_pred             CCCCceeEEEEEcchhcccCCc
Confidence            9999999999999999876543

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.50  E-value=7.3e-14  Score=135.79  Aligned_cols=95  Identities=32%  Similarity=0.558  Sum_probs=85.9

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCCCCCCc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~~~~dd  281 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.++.+..+|+++++++||.|+|.|.|.+.. ....|.|+|||+|.+++|+
T Consensus       385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~d  464 (510)
T 3jzy_A          385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPDD  464 (510)
T ss_dssp             -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSCC
T ss_pred             CCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCCC
Confidence            458999999999999998876 89999999999999999999999999999999999865 4467999999999999999


Q ss_pred             eeEEEEEeCcccccccc
Q 021294          282 FMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       282 ~iG~~~v~l~~l~~~~~  298 (314)
                      +||.+.++|.++..+..
T Consensus       465 ~lG~~~~~l~~l~~~~~  481 (510)
T 3jzy_A          465 FLGRTEIPVAKIRTEQE  481 (510)
T ss_dssp             EEEEEEEEHHHHHHHHH
T ss_pred             ceEEEEEEHHHhccccC
Confidence            99999999999876543

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.47  E-value=1.5e-13  Score=124.61  Aligned_cols=92  Identities=30%  Similarity=0.537  Sum_probs=80.2

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+   +.+..+|+++++++||.|+|.|.|.+..   ....|.|+|||++.
T Consensus        18 ~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~   97 (296)
T 1dqv_A           18 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR   97 (296)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCC
Confidence            357899999999999998876 8999999999   5678899999999999999999999853   24589999999999


Q ss_pred             CCCCceeEEEEEe-Cccccc
Q 021294          277 FTTDDFMGDAEID-IQPLVT  295 (314)
Q Consensus       277 ~~~dd~iG~~~v~-l~~l~~  295 (314)
                      ++++++||++.++ +.++..
T Consensus        98 ~~~~~~iG~~~i~~l~~~~~  117 (296)
T 1dqv_A           98 FSRHDLIGQVVLDNLLELAE  117 (296)
T ss_dssp             SSCCCEEEEEECCCTTGGGS
T ss_pred             CCCCceEEEEEecccccccc
Confidence            9999999999996 545543

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.43  E-value=3.5e-13  Score=121.14  Aligned_cols=90  Identities=31%  Similarity=0.428  Sum_probs=79.0

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d  275 (314)
                      .+.|.|.|++|++|+..+.. .+||||++.+.  +   .+.+|+++++++||.|||.|.|.+...   ...|.|+|||++
T Consensus       149 ~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d  228 (284)
T 2r83_A          149 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  228 (284)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECC
T ss_pred             CCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCC
Confidence            46899999999999998876 89999999983  2   467899999999999999999998653   346999999999


Q ss_pred             CCCCCceeEEEEEeCcccc
Q 021294          276 TFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~  294 (314)
                      .++++++||++.+++..+.
T Consensus       229 ~~~~~~~iG~~~i~l~~~~  247 (284)
T 2r83_A          229 KIGKNDAIGKVFVGYNSTG  247 (284)
T ss_dssp             SSSCCCEEEEEEEETTCCH
T ss_pred             CCCCCcEEEEEEECCCCCC
Confidence            9999999999999998754

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.38  E-value=1.3e-12  Score=104.18  Aligned_cols=89  Identities=13%  Similarity=0.250  Sum_probs=80.0

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecC---CCCcEEEEEEEcCCCCCCce
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFTTDDF  282 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~~dd~  282 (314)
                      -|.|.|.+|++|+.    ..|||+++.+.+.+++|++++ +++||+|||.|.+++..   ..+.|.|.|+|++.++++.+
T Consensus        22 sL~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nrl   97 (144)
T 3l9b_A           22 ALIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKL   97 (144)
T ss_dssp             EEEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCEE
T ss_pred             EEEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCCE
Confidence            47899999999984    679999999999999999998 69999999999999854   45789999999999999999


Q ss_pred             eEEEEEeCccccccccc
Q 021294          283 MGDAEIDIQPLVTAARA  299 (314)
Q Consensus       283 iG~~~v~l~~l~~~~~~  299 (314)
                      ||++.++|+++......
T Consensus        98 IG~~~i~Lq~lv~~~~l  114 (144)
T 3l9b_A           98 IGTFRMVLQKVVEENRV  114 (144)
T ss_dssp             EEEEEEESHHHHHHSEE
T ss_pred             EEEEEEEhHHhccCCeE
Confidence            99999999998866543

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.37  E-value=2.3e-12  Score=127.99  Aligned_cols=95  Identities=24%  Similarity=0.448  Sum_probs=83.8

Q ss_pred             eeeEEEEEEEeeecCCCCCC---CCCCcEEEEEECC-----eEeeeeeecCC-CCCcccceeEEEecC-CCCcEEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDV---MTSDPYVILALGH-----QTVKTRVIKSN-LNPVWNESLMLSIPE-NIPPLKVLVYD  273 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~---~~~dPyv~v~l~~-----~~~kT~~~~~t-lnP~w~e~~~f~v~~-~~~~L~i~v~d  273 (314)
                      ..+.|.|+|++|++|+..+.   ..+||||+|.+.+     .+.+|++++++ +||+|||+|.|.+.. ....|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            45899999999999998873   3899999999933     67899999997 999999999999865 34679999999


Q ss_pred             cCCCCCCceeEEEEEeCcccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      +|.++.+++||++.++|..|..+..
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G~r  599 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQGYR  599 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCCcE
Confidence            9999999999999999999987754

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.37  E-value=5.8e-13  Score=133.77  Aligned_cols=98  Identities=23%  Similarity=0.459  Sum_probs=85.9

Q ss_pred             eeeEEEEEEEeeecCCC---CCCC-CCCcEEEEEEC---CeEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294          204 FVGLIKVNVVKGTNLAV---RDVM-TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~---~d~~-~~dPyv~v~l~---~~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d  275 (314)
                      ..+.|.|+|++|++|+.   .|.. .+||||++.++   ..+.+|+++++++||+|||+|.|.+.. ....|.|+|||+|
T Consensus        16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~D   95 (749)
T 1cjy_A           16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDAN   95 (749)
T ss_dssp             CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEECC
T ss_pred             CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEECC
Confidence            46899999999999998   6654 79999999997   468899999999999999999999976 5678999999999


Q ss_pred             CCCCCceeEEEEEeCccccccccccCc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      .++ +++||++.++|.+|..+.....|
T Consensus        96 ~~~-ddfIG~v~I~L~~L~~g~~~~~w  121 (749)
T 1cjy_A           96 YVM-DETLGTATFTVSSMKVGEKKEVP  121 (749)
T ss_dssp             SSS-CEEEEEECCBSTTSCTTCCCCEE
T ss_pred             CCC-CceeEEEEEEHHHcCCCCceEEE
Confidence            999 99999999999999766544433

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.35  E-value=3.4e-13  Score=122.31  Aligned_cols=91  Identities=30%  Similarity=0.476  Sum_probs=80.4

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d  275 (314)
                      .+.|.|.|++|++|+..+.. .+||||++.+.  +   .+.+|+++++++||.|||.|.|.+...   ...|.|+|||++
T Consensus       151 ~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d  230 (296)
T 1dqv_A          151 AGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYD  230 (296)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECC
T ss_pred             cceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCC
Confidence            47999999999999998876 78999999995  2   567999999999999999999998653   357999999999


Q ss_pred             CCCCCceeEEEEEeCccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVT  295 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~  295 (314)
                      .++.+++||.+.+++..+..
T Consensus       231 ~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          231 CIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             SSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCceEEEEEECCccCCc
Confidence            99999999999999987754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.16  E-value=3.7e-11  Score=120.75  Aligned_cols=93  Identities=38%  Similarity=0.528  Sum_probs=82.4

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+.++.. .+||||++.+     ...+.+|+++++++||.|||.|.|.+..  ....|.|+|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            46899999999999998877 8999999999     4467899999999999999999999864  34569999999999


Q ss_pred             CCCCceeEEEEEeCccccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .+.+++||.+.++|.++....
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~~  271 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKAG  271 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHCC
T ss_pred             ccccccccccccchhhhccCC
Confidence            999999999999999887543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.16  E-value=3.3e-12  Score=123.41  Aligned_cols=99  Identities=13%  Similarity=0.206  Sum_probs=12.8

Q ss_pred             eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEECCe-EeeeeeecCC---CCCcccceeEEEecCCCCcEEEEEEEc-C--
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQ-TVKTRVIKSN---LNPVWNESLMLSIPENIPPLKVLVYDK-D--  275 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~-~~kT~~~~~t---lnP~w~e~~~f~v~~~~~~L~i~v~d~-d--  275 (314)
                      ...+.|.|+|++|++|+.++    ||||++.++++ ..+|++++++   +||.|||.|.|.+.+....|.|+|||. +  
T Consensus         8 r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEEECC-------------------------------------------------CCEECC-------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            45678999999999999877    99999999765 5699999999   999999999998655457899999994 4  


Q ss_pred             -CCCCCceeEEEEEeCccccccccccCcccc
Q 021294          276 -TFTTDDFMGDAEIDIQPLVTAARACETPIS  305 (314)
Q Consensus       276 -~~~~dd~iG~~~v~l~~l~~~~~~~~~~~~  305 (314)
                       ..+++++||.+.+++..+..+.....|..+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L  114 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGRHFTEQWYPV  114 (483)
T ss_dssp             -----------------------CCEECC--
T ss_pred             ccCCCCceEEEEEEEHHHhcCCCCCCeEEEC
Confidence             367899999999999999866544444433

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.03  E-value=8.9e-10  Score=111.76  Aligned_cols=88  Identities=16%  Similarity=0.451  Sum_probs=74.7

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECC-------eEeeeeeecC-CCCCcccce-eEEE-ecC-CCCcEEEEEEE
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGH-------QTVKTRVIKS-NLNPVWNES-LMLS-IPE-NIPPLKVLVYD  273 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~-------~~~kT~~~~~-tlnP~w~e~-~~f~-v~~-~~~~L~i~v~d  273 (314)
                      .+.|.|+|++|++|+..   ..||||+|.+.+       ++++|+++++ ++||+|||+ |.|. +.. ....|+|+|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999854   579999999943       5679999886 599999998 9998 643 44679999999


Q ss_pred             cCCCCCCceeEEEEEeCccccccccc
Q 021294          274 KDTFTTDDFMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       274 ~d~~~~dd~iG~~~v~l~~l~~~~~~  299 (314)
                      ++    +++||++.++|..|..|.++
T Consensus       726 ~d----ddfiG~~~ipL~~L~~GyR~  747 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPGYRH  747 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCEEEE
T ss_pred             cC----CCeeeEEEEEHHHcCCcceE
Confidence            85    79999999999999988764

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.00  E-value=8.6e-10  Score=112.55  Aligned_cols=88  Identities=19%  Similarity=0.443  Sum_probs=73.8

Q ss_pred             eEEEEEEEeeecCCCCCCCCCCcEEEEEECC------eEeeeeeecC-CCCCcccc-eeEEE-ecC-CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGH------QTVKTRVIKS-NLNPVWNE-SLMLS-IPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~------~~~kT~~~~~-tlnP~w~e-~~~f~-v~~-~~~~L~i~v~d~d  275 (314)
                      ..|.|+|++|++|+..   .+||||+|.+.+      .+++|+++++ ++||+||| .|.|. +.. ....|+|+|||++
T Consensus       725 ~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d  801 (885)
T 3ohm_B          725 NALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG  801 (885)
T ss_dssp             EEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred             eEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC
Confidence            4799999999999863   579999999943      3579999986 59999999 69998 643 4467999999987


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                          +++||++.++|..|..|.++.
T Consensus       802 ----ddfiG~~~lpL~~L~~GyR~v  822 (885)
T 3ohm_B          802 ----GKFVGHRILPVSAIRSGYHYV  822 (885)
T ss_dssp             ----TEEEEEEEEETTTCCCEEEEE
T ss_pred             ----ccEEeeEEEEHHHcCCCceEE
Confidence                799999999999999887653

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=98.94  E-value=2.6e-09  Score=108.71  Aligned_cols=89  Identities=26%  Similarity=0.523  Sum_probs=73.6

Q ss_pred             eeeEEEEEEEeeecCCCCCCCCCCcEEEEEE-C---C--eEeeee-eecC-CCCCcccc-eeEE-EecC-CCCcEEEEEE
Q 021294          204 FVGLIKVNVVKGTNLAVRDVMTSDPYVILAL-G---H--QTVKTR-VIKS-NLNPVWNE-SLML-SIPE-NIPPLKVLVY  272 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~---~--~~~kT~-~~~~-tlnP~w~e-~~~f-~v~~-~~~~L~i~v~  272 (314)
                      ..+.|.|+|++|++|+..   .+||||+|.+ |   .  ++++|+ ++++ ++||+||| .|.| .+.. ....|+|.||
T Consensus       676 ~~~~L~V~Visa~~L~~~---~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCcc---CCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            357899999999999853   5799999999 3   1  357899 7765 69999999 6999 7753 4457999999


Q ss_pred             EcCCCCCCceeEEEEEeCccccccccc
Q 021294          273 DKDTFTTDDFMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       273 d~d~~~~dd~iG~~~v~l~~l~~~~~~  299 (314)
                      |++    +++||++.++|..|..|...
T Consensus       753 D~d----~d~iG~~~ipl~~L~~G~r~  775 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNSGYHH  775 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCCEEEE
T ss_pred             EeC----CCccceEeeehhhcCCCcEE
Confidence            986    79999999999999887654

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=98.24  E-value=8.6e-06  Score=63.08  Aligned_cols=87  Identities=10%  Similarity=0.200  Sum_probs=64.6

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeE----eee-eeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQT----VKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFT  278 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~----~kT-~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~  278 (314)
                      ...|+|.+.+..--+..... ..||||.+.++...    .+| ...+.|..|.|++.|.-.+.+ ...|.|.|++...  
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a~--   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAAE--   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT-TCEEEEEEEEETT--
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC-CEEEEEEEEcCCC--
Confidence            35677777555422222222 68999999986543    244 667779999999999988865 4789999997554  


Q ss_pred             CCceeEEEEEeCcccccc
Q 021294          279 TDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~  296 (314)
                        +|++.+.+.+++|+..
T Consensus        82 --~fvAn~tV~~edL~~~   97 (126)
T 1yrk_A           82 --EPVSEVTVGVSVLAER   97 (126)
T ss_dssp             --EEEEEEEEEHHHHHHH
T ss_pred             --CeeeEEEEEHHHHHhh
Confidence              9999999999999854

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=98.15  E-value=7.3e-06  Score=64.31  Aligned_cols=89  Identities=11%  Similarity=0.263  Sum_probs=66.7

Q ss_pred             eeeeEEEEEEEeeecCCCCC--CCCCCcEEEEEECCeE----eee-eeecCCCCCcccceeEEEecCCCCcEEEEEEEcC
Q 021294          203 EFVGLIKVNVVKGTNLAVRD--VMTSDPYVILALGHQT----VKT-RVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKD  275 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d--~~~~dPyv~v~l~~~~----~kT-~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d  275 (314)
                      ...++|+|.+.+..--+...  ....||||.|.++...    .+| ...+.|..|.|++.|.-.+.+ ...|.|.|++..
T Consensus         7 ~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~-Gr~l~i~Vfh~a   85 (138)
T 2enj_A            7 GMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK-GRVMQIIVKGKN   85 (138)
T ss_dssp             SCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS-SCEEEEEEECSS
T ss_pred             ccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC-CeEEEEEEEcCC
Confidence            34467788876665433332  2368999999996542    456 566679999999999988865 478999999644


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      .    +|++.+.|.+.+|+..
T Consensus        86 ~----~fVAn~tV~~edL~~~  102 (138)
T 2enj_A           86 V----DLISETTVELYSLAER  102 (138)
T ss_dssp             C----SCCEEEEEESHHHHHH
T ss_pred             C----CeeeEEEEEHHHHHhh
Confidence            3    8999999999999854

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=89.91  E-value=5  Score=33.91  Aligned_cols=55  Identities=15%  Similarity=0.271  Sum_probs=41.4

Q ss_pred             eEeeeeeecCCCCCcccceeEEEecCC---CCcEEEEEEEcCCC----CCCceeEEEEEeCc
Q 021294          237 QTVKTRVIKSNLNPVWNESLMLSIPEN---IPPLKVLVYDKDTF----TTDDFMGDAEIDIQ  291 (314)
Q Consensus       237 ~~~kT~~~~~tlnP~w~e~~~f~v~~~---~~~L~i~v~d~d~~----~~dd~iG~~~v~l~  291 (314)
                      ..++|.+.-++.+|.|+|++.+.++..   ...|.|+++....-    ..+..+|-+.++|-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            346788888899999999999999763   34688998875432    12347899999975

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=89.44  E-value=0.3  Score=30.64  Aligned_cols=39  Identities=31%  Similarity=0.782  Sum_probs=32.3

Q ss_pred             CCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCCc
Q 021294           27 PGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGVH   65 (314)
Q Consensus        27 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~~   65 (314)
                      .....|++|++. -|.|=.-..|..+|-.|.-.++..|.+
T Consensus         2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~   41 (46)
T 1gnf_A            2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN   41 (46)
T ss_dssp             CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred             CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence            356899999986 578999889999999998888776653

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=87.55  E-value=0.69  Score=28.54  Aligned_cols=35  Identities=26%  Similarity=0.609  Sum_probs=29.6

Q ss_pred             CCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294           30 RHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV   64 (314)
Q Consensus        30 ~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~   64 (314)
                      +.|++|+.. -|.|=.-..|-.+|-.|.-..+..|.
T Consensus         2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   37 (43)
T ss_dssp             CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred             CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence            579999986 57999999999999999887776554

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=86.30  E-value=0.93  Score=30.73  Aligned_cols=38  Identities=26%  Similarity=0.603  Sum_probs=32.1

Q ss_pred             CCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294           27 PGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV   64 (314)
Q Consensus        27 ~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~   64 (314)
                      .+...|++|+.. -|.|-.-.-|-.||-.|.-..+..|.
T Consensus         7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence            456899999985 58999999999999999887776664

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=85.24  E-value=0.64  Score=31.23  Aligned_cols=39  Identities=18%  Similarity=0.480  Sum_probs=32.6

Q ss_pred             CCCCCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294           26 QPGNRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV   64 (314)
Q Consensus        26 ~~~N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~   64 (314)
                      ......|++|+.. -|.|=.-..|-.+|-.|.-..+..|.
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~   43 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI   43 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence            4567899999986 57999999999999999887776664

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=81.11  E-value=1.4  Score=33.40  Aligned_cols=35  Identities=34%  Similarity=0.890  Sum_probs=28.9

Q ss_pred             CCCCcCCCCC-CCCeEEecccceechhhHHHHhhcC
Q 021294           29 NRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLG   63 (314)
Q Consensus        29 N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg   63 (314)
                      .+.|++||+. -|.|=.-..|-++|-.|.-.++..|
T Consensus         5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G   40 (115)
T 4hc9_A            5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNG   40 (115)
T ss_dssp             -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHS
T ss_pred             CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcc
Confidence            4789999985 6899999999999999987775444

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=80.73  E-value=9  Score=39.49  Aligned_cols=88  Identities=16%  Similarity=0.266  Sum_probs=59.2

Q ss_pred             eeeeEEEEEEEeeecCCCCCCCCCCcEEEEEE--CCeE----eeeeeecCCCCCcccceeEEEec----CCCCcEEEEEE
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVMTSDPYVILAL--GHQT----VKTRVIKSNLNPVWNESLMLSIP----ENIPPLKVLVY  272 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l--~~~~----~kT~~~~~tlnP~w~e~~~f~v~----~~~~~L~i~v~  272 (314)
                      .....+.|+|..+.++...+  ..+-||.+.+  |.+.    ..|..+.-..+|.|||.+.|++.    +....|.|+||
T Consensus       214 ~~~~~f~i~i~~~~~~~~~~--~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNADE--RMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             hcCCceEEEEEEecccCCCC--CceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            34468899999998886532  3567877766  5432    34554444678999999999873    24567999999


Q ss_pred             EcCCC--C----------CCceeEEEEEeCcc
Q 021294          273 DKDTF--T----------TDDFMGDAEIDIQP  292 (314)
Q Consensus       273 d~d~~--~----------~dd~iG~~~v~l~~  292 (314)
                      +....  +          .+..+|.+.++|-+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd  323 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFD  323 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBC
T ss_pred             EecCCccCccccccccccccceEEEEeeeEEC
Confidence            95321  1          23489999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1dcqa2	122	g.45.1.1 (A:247-368) Pyk2-associated protein beta	5e-42
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	9e-18
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	3e-15
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-15
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-15
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-14
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	2e-14
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	3e-14
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-13
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-12
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	3e-12
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	3e-12
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-11
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	7e-11
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	2e-10
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-10
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	5e-10
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	2e-08
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-06
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	7e-06
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	6e-05
d1u5ka2	157	g.45.1.2 (A:81-237) Recombinational repair protein	7e-04

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  139 bits (351), Expect = 5e-42
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 17  RARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDE 76
           +  +  + R  GN  C DCG+PDP W+S + G+  CI+CSGIHR LGVH S++ S+ LD 
Sbjct: 3   KEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV 62

Query: 77  WTNEQVDALAEMGGNIAVNKKYEAYTP-GNLKKPSPNSFIDERSDFIRRKYEKLEF 131
               ++     + GN   N+  E   P  +  KP+P S +  R D+I  KY +  +
Sbjct: 63  LGTSELLLAKNI-GNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRY 117

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 76.3 bits (187), Expect = 9e-18
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPE 262
            G ++V +V    L   D +   DPYV L    Q  K+ V +     P WNE+ + ++ E
Sbjct: 9   HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE 68

Query: 263 NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295
               LK  ++DKD  T DD +G+A I ++P+  
Sbjct: 69  GTTELKAKIFDKDVGTEDDAVGEATIPLEPVFV 101

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.0 bits (168), Expect = 3e-15
 Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 8/96 (8%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 259
            ++ V V    NL   D    SDPYV L L          KT+ IK +LNP WNE+    
Sbjct: 15  EVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ 74

Query: 260 IPENIP--PLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
           + E+     L V ++D D  + +DFMG     I  L
Sbjct: 75  LKESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL 110

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 3e-15
 Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 202 VEFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSI 260
           V+ VG+++V V+K  +L   D    SDP+ +L LG+  ++T  +  NLNP WN+     I
Sbjct: 2   VKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPI 61

Query: 261 PENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            +    L+V V+D+D     DF+G   I +  +
Sbjct: 62  KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSI 94

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 4e-15
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 12/100 (12%)

Query: 206 GLIKVNVVKGTNLAVRDV-MTSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS 259
             + V ++   +L  R+     +PYV +            +T+ +K  L P WN++ + S
Sbjct: 14  HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYS 73

Query: 260 IPENI----PPLKVLVYDKDTFTTD--DFMGDAEIDIQPL 293
                      L++ ++D+     +  +F+G+  I+++  
Sbjct: 74  PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 1e-14
 Identities = 19/88 (21%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIP 265
            L+ V V K      ++    + YV L + +    T  ++    P W +  M  I     
Sbjct: 2   SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDL 58

Query: 266 PLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            L V V++K     D  +G   I ++ +
Sbjct: 59  GLTVEVWNKG-LIWDTMVGTVWIPLRTI 85

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 2e-14
 Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 9/95 (9%)

Query: 206 GLIKVNVVKGTNLAVRDV-MTSDPYVILALGHQ-----TVKTRVIKSNLNPVWNESLMLS 259
             + V V+K  +L   DV   SDPYV + L H        KT V K   N V+NE  +  
Sbjct: 15  NTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD 74

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 291
           IP        ++ LV D +  + ++ +G   +   
Sbjct: 75  IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 109

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 66.7 bits (162), Expect = 3e-14
 Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 206 GLIKVNVVKGTNLAVRDV-MTSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIP 261
             + V +++   L   D+  TSDPYV + L     +  +T+V +  LNPV+NE     +P
Sbjct: 34  NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVP 93

Query: 262 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            +      L + VYD D F+  D +G+ ++ +  +
Sbjct: 94  YSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 206 GLIKVNVVKGTNLAVRDV-MTSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 259
           G + V +++  +LA  D    SDP+V L L          KT++ K  LNP +NE     
Sbjct: 15  GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 74

Query: 260 IPENIPPLKVLV---YDKDTFTTDDFMGDAEIDIQPL 293
           I  +    K L    +D D   ++D++G  ++ I   
Sbjct: 75  IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAK 111

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 61.4 bits (148), Expect = 2e-12
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 201 MVEFVGLIKVNVVKGTNLAVRDVM------------TSDPYVILALGHQTV-KTRVIKSN 247
           MV F GL+K+ + +  +L                    DPY+ L +    + +T   +  
Sbjct: 1   MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKT 60

Query: 248 LNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPLV 294
            +P W++  +  +       ++ V+       DDF+ +  I  + L+
Sbjct: 61  NSPAWHDEFVTDVCNGRKI-ELAVFHDAPIGYDDFVANCTIQFEELL 106

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM--TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSI 260
               VN+ +   L   D    TSDPY+ + +       VKTRV++  L+P ++E+     
Sbjct: 22  KAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYG 81

Query: 261 PE----NIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
                     L   +   D F+ DD +G+  I +  +
Sbjct: 82  IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENI 264
             +++ V+       +       PYV + +  Q+ KT    +  +P W + L + +   +
Sbjct: 6   SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PV 64

Query: 265 PPLKVLVYDKDTFTTDDFMGDAEIDIQPLVT 295
             L   V+   T  +D  +G A +DI   + 
Sbjct: 65  SKLHFRVWSHQTLKSDVLLGTAALDIYETLK 95

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 4e-11
 Identities = 23/94 (24%), Positives = 41/94 (43%), Gaps = 9/94 (9%)

Query: 208 IKVNVVKGTNLAVRDVM----TSDPYVILALG---HQTVKTRVIKSNLNPVWNESLM-LS 259
             V V++ T +          T DPYV L +        +TR   +++NPVWNE+   + 
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 260 IPENIPPLKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            P     L++ + D +    D+ +G A   +  +
Sbjct: 65  DPNQENVLEITLMDANYVM-DETLGTATFTVSSM 97

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 7e-11
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 259
           G + V +++  NL   DV   SDPYV + L       +  KT + K+ LNP +NES    
Sbjct: 25  GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE 84

Query: 260 IPEN---IPPLKVLVYDKDTFTTDDFMGDAEIDI 290
           +P        + V V D D    +D +G   +  
Sbjct: 85  VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGY 118

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 19/107 (17%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL--------------GHQTVKTRVIKSNLNP 250
           G + +++++  NL  RD    SDP+V + L                   +T+ ++ +LNP
Sbjct: 18  GNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNP 77

Query: 251 VWNESLMLSIPENIPP----LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
            WN++++             L+V V+D D F+++DF+G+  ID+   
Sbjct: 78  EWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 10/94 (10%)

Query: 208 IKVNVVKGTNLAVRDVM---TSDPYVI-----LALGHQTVKTRVIK-SNLNPVWNESLML 258
           ++V ++ G  L   +       DP VI     +     + +T VI  +  NP W+     
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 259 SIP-ENIPPLKVLVYDKDTFTTDDFMGDAEIDIQ 291
            +   ++  ++ +V D D+ + +DF+G + I   
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWN 99

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.8 bits (131), Expect = 5e-10
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLS 259
           GL+ V ++K +NL   D+   SDPYV  +L       +  KT + K+ LNP +NE+L+  
Sbjct: 20  GLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFD 79

Query: 260 IPENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQ 291
           +         L + V D D    ++ +G   +  +
Sbjct: 80  VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPE 114

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.0 bits (118), Expect = 2e-08
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVI----LALGHQTVKTRVIKSNLNPVWNESLMLSIP 261
             + V +++  +L  +D        +    L    +  +T+V +  LNP++NE+   S+P
Sbjct: 18  DQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVP 77

Query: 262 ENIPP---LKVLVYDKDTFTTDDFMGDAEID 289
                   L   VYD D F+  D +G   +D
Sbjct: 78  LAELAQRKLHFSVYDFDRFSRHDLIGQVVLD 108

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 18/94 (19%)

Query: 208 IKVNVVKGTNLAVRDVMTSDPYVILALG--------HQTVKTRVIKSNLNPVWNESLMLS 259
           + + V+ G  L+ R V     YV + L             K     +++NPVW E   + 
Sbjct: 3   LSITVISGQFLSERSV---RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 260 IPENIPPLKVL---VYDKDTFTTDDFMGDAEIDI 290
               +P L  L   V ++     + F+G   I I
Sbjct: 60  EKILMPELASLRVAVMEEG----NKFLGHRIIPI 89

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 7e-06
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 206 GLIKVNVVKGTNLAVRDVMTSDPYVILAL----GHQTVKTRVIKSNLNPVWNESLMLSIP 261
             + V  ++            D YV  ++    G    +T + K  L+  W E L+L + 
Sbjct: 26  AELFVTRLEAVTSNHDGGC--DCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLA 83

Query: 262 ENIPP---LKVLVYDKDTFTTDDFMGDAEIDIQPL 293
           E   P   L + +   D F+     G+  + +   
Sbjct: 84  EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 225 TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTT 279
            S P+  + +       +       K  + P W  +    I      +++++        
Sbjct: 23  ASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAA---- 77

Query: 280 DDFMGDAEIDIQPL 293
           +D M +  + +  L
Sbjct: 78  EDPMSEVTVGVSVL 91

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Length = 157

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 26  QPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDAL 85
            P    CA CG+PDP+      G  +C KC+ +       +  +               +
Sbjct: 67  IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALPPYPPAVLDFLRHAVRRTVRASFEQPV 126

Query: 86  -----AEMGGNIAVNKKYEAYTPGNLKKP 109
                  +   +    K+     G +   
Sbjct: 127 PSADRPALWRALE---KFVTVQVGGVHSW 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d1dcqa2	122	Pyk2-associated protein beta ARF-GAP domain {Mouse	100.0
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.8
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.72
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.68
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.67
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.65
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.64
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.63
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.63
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.63
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.62
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.61
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.61
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.55
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.54
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.54
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.51
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.5
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.42
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.28
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.2
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	91.37
d1u5ka2	157	Recombinational repair protein RecO, C-terminal do	91.31
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	89.98
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	86.27

>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: Pyk2-associated protein beta ARF-GAP domain
domain: Pyk2-associated protein beta ARF-GAP domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-45  Score=288.72  Aligned_cols=117  Identities=37%  Similarity=0.700  Sum_probs=111.6

Q ss_pred             HHHHHHHHHcCCCCCCCcCCCCCCCCeEEecccceechhhHHHHhhcCCceeEEEEeccCCCCHHHHHHHHHhcchhHHH
Q 021294           16 PRARLENLLRQPGNRHCADCGSPDPKWVSLSTGVFICIKCSGIHRSLGVHISKVLSVKLDEWTNEQVDALAEMGGNIAVN   95 (314)
Q Consensus        16 ~~~~~~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~~~Hr~lg~~~s~v~s~~~d~w~~~~v~~~~~~gGN~~~n   95 (314)
                      ++++|++|++.|+|+.|||||+++|+|||+|||||||++|||+||+||+|||+|+|++||+|+++||+.|+. +||..+|
T Consensus         2 t~~~l~~l~~~p~N~~CaDC~~~~p~w~s~n~GvfvC~~CsgiHR~lg~~is~VkS~~ld~w~~~~i~~~~~-~GN~~~n   80 (122)
T d1dcqa2           2 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKN-IGNAGFN   80 (122)
T ss_dssp             HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHH-SCHHHHH
T ss_pred             hHHHHHHHHhCCCCCccCCCCCCCCCeEEecCCEEEchhhhHHHhcCCCCceEeeecccCCCCHHHHHHHHH-HhHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999999976 6999999


Q ss_pred             HHHhhhCCC-CCCCCCCCCCHHHHHHHHhcccccceeec
Q 021294           96 KKYEAYTPG-NLKKPSPNSFIDERSDFIRRKYEKLEFFN  133 (314)
Q Consensus        96 ~~~e~~~~~-~~~kp~~~~~~~~r~~fI~~KY~~~~f~~  133 (314)
                      ++||+.+|. ...||.|+++...|++||++||++++|+.
T Consensus        81 ~~~ea~~~~~~~~kp~~~~~~~~r~~fI~~KY~~k~f~~  119 (122)
T d1dcqa2          81 EIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYAR  119 (122)
T ss_dssp             HHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSC
T ss_pred             HHHHhhCCcccCcCCCCCccHHHHHHHHHHHHHhCcccc
Confidence            999999985 45689999999999999999999999996

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=142.86  Aligned_cols=97  Identities=31%  Similarity=0.573  Sum_probs=89.0

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCc
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDD  281 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd  281 (314)
                      +.+|.|.|+|++|++|+..+.. .+||||++.+++++.+|++++++.||.|+|.|.|.+......|.|+|||++.+++++
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            4579999999999999998876 899999999999999999999999999999999999876678999999999999999


Q ss_pred             eeEEEEEeCccccccccc
Q 021294          282 FMGDAEIDIQPLVTAARA  299 (314)
Q Consensus       282 ~iG~~~v~l~~l~~~~~~  299 (314)
                      +||.+.++|.++..+...
T Consensus        83 ~lG~~~i~l~~l~~~~~~  100 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPN  100 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCE
T ss_pred             eEEEEEEEHHHCCCCCce
Confidence            999999999999766543

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.72  E-value=5.7e-18  Score=134.48  Aligned_cols=95  Identities=32%  Similarity=0.540  Sum_probs=85.9

Q ss_pred             eeeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeec-CCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294          203 EFVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIK-SNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       203 e~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~-~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d  280 (314)
                      ...|.|.|+|++|++|+..+.. .+||||++.++.+..+|++++ .++||.|||.|.|.+......|.|+|||++.+++|
T Consensus         7 ~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d~~~~d   86 (136)
T d1wfja_           7 GPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTED   86 (136)
T ss_dssp             CCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSSCTTT
T ss_pred             CCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEecCCCCC
Confidence            4568999999999999998876 899999999999999999987 58999999999999987667799999999999999


Q ss_pred             ceeEEEEEeCccccccc
Q 021294          281 DFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       281 d~iG~~~v~l~~l~~~~  297 (314)
                      ++||.+.|+|.++....
T Consensus        87 ~~iG~~~i~L~~l~~~~  103 (136)
T d1wfja_          87 DAVGEATIPLEPVFVEG  103 (136)
T ss_dssp             CCSEEEEEESHHHHHHS
T ss_pred             CEEEEEEEEhHHhcccC
Confidence            99999999999986543

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.7e-17  Score=127.15  Aligned_cols=90  Identities=20%  Similarity=0.401  Sum_probs=81.1

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      +.|.|+|++|++++..+.. .+||||++.++++.++|++++++.||.|||.|.|.+.+ ...|.|+|||++.+++|++||
T Consensus         6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~-~~~l~~~V~d~d~~~~d~~iG   84 (133)
T d2nq3a1           6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP-VSKLHFRVWSHQTLKSDVLLG   84 (133)
T ss_dssp             EEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT-TCEEEEEEEECCSSSCCEEEE
T ss_pred             eEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe-cceeEEEEEEccCCCCCceEE
Confidence            6799999999999887666 89999999999999999999999999999999999875 367999999999999999999


Q ss_pred             EEEEeCcccccc
Q 021294          285 DAEIDIQPLVTA  296 (314)
Q Consensus       285 ~~~v~l~~l~~~  296 (314)
                      ++.++|.++...
T Consensus        85 ~~~i~L~~l~~~   96 (133)
T d2nq3a1          85 TAALDIYETLKS   96 (133)
T ss_dssp             EEEEEHHHHHHH
T ss_pred             EEEEEHHHhhhh
Confidence            999999988653

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=9.5e-17  Score=126.64  Aligned_cols=92  Identities=37%  Similarity=0.524  Sum_probs=81.8

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC--CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE--NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~--~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+.++.. .+||||++++     +..+.+|++++++.||.|||.|.|.+..  ....|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            36899999999999998877 8899999999     4567899999999999999999999865  23579999999999


Q ss_pred             CCCCceeEEEEEeCcccccc
Q 021294          277 FTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~  296 (314)
                      ++++++||.+.++|.++..+
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~  113 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA  113 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC
T ss_pred             CCCCcEeEEEEEeHHHcCCC
Confidence            99999999999999998644

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.65  E-value=4.6e-16  Score=123.35  Aligned_cols=96  Identities=21%  Similarity=0.461  Sum_probs=83.6

Q ss_pred             ceeeeeEEEEEEEeeecCCCCC------------CCCCCcEEEEEECCeE-eeeeeecCCCCCcccceeEEEecCCCCcE
Q 021294          201 MVEFVGLIKVNVVKGTNLAVRD------------VMTSDPYVILALGHQT-VKTRVIKSNLNPVWNESLMLSIPENIPPL  267 (314)
Q Consensus       201 ~~e~~g~L~V~v~~a~~L~~~d------------~~~~dPyv~v~l~~~~-~kT~~~~~tlnP~w~e~~~f~v~~~~~~L  267 (314)
                      |+-+.|.|.|+|++|++|+..+            ...+||||++.++++. .+|++++++.||.|||.|.|.+.+ ...|
T Consensus         1 ~~~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l   79 (136)
T d1gmia_           1 MVVFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKI   79 (136)
T ss_dssp             CCCEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEE
T ss_pred             CccEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCce
Confidence            3567899999999999998642            2268999999999876 478999999999999999999965 3679


Q ss_pred             EEEEEEcCCCCCCceeEEEEEeCccccccc
Q 021294          268 KVLVYDKDTFTTDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       268 ~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~  297 (314)
                      .|+|||++.+++|++||.+.++|.++....
T Consensus        80 ~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~  109 (136)
T d1gmia_          80 ELAVFHDAPIGYDDFVANCTIQFEELLQNG  109 (136)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHTSTT
T ss_pred             EEEEEEecCCCCceeEEEEEEEHHHhhhcC
Confidence            999999999999999999999999997654

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=5.2e-16  Score=124.02  Aligned_cols=95  Identities=28%  Similarity=0.490  Sum_probs=83.2

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCCC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTFT  278 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~~  278 (314)
                      +.|.|+|++|++|+..+.. .+||||++.+   +.+..+|++++++.||.|||.|.|.+..   ....|.|+|||++.++
T Consensus        34 ~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~~~  113 (143)
T d1rsya_          34 NQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS  113 (143)
T ss_dssp             TEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS
T ss_pred             CEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCCCC
Confidence            5899999999999988876 8899999998   5567899999999999999999998753   3567999999999999


Q ss_pred             CCceeEEEEEeCcccccccccc
Q 021294          279 TDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       279 ~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                      ++++||.+.|+|.++..+....
T Consensus       114 ~~~~iG~~~i~L~~~~~~~~~~  135 (143)
T d1rsya_         114 KHDIIGEFKVPMNTVDFGHVTE  135 (143)
T ss_dssp             CCEEEEEEEEEGGGCCCSSCEE
T ss_pred             CCcEEEEEEEEchhccCCCCCc
Confidence            9999999999999986554443

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=6.6e-16  Score=121.03  Aligned_cols=89  Identities=21%  Similarity=0.339  Sum_probs=79.3

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEECCeEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCCceeE
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALGHQTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTDDFMG  284 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~~~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~dd~iG  284 (314)
                      ++.|.|+|.+|++|...+  ..||||++.+++++.+|.+++ +.||.|||.|.|.+......|.|+|||++.. .|++||
T Consensus         1 ~~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG   76 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVG   76 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEE
T ss_pred             CeEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceE
Confidence            468999999999998877  579999999999999999886 4599999999999987778899999999876 589999


Q ss_pred             EEEEeCccccccc
Q 021294          285 DAEIDIQPLVTAA  297 (314)
Q Consensus       285 ~~~v~l~~l~~~~  297 (314)
                      .+.|+|.++....
T Consensus        77 ~~~I~L~~l~~~~   89 (128)
T d2cjta1          77 TVWIPLRTIRQSN   89 (128)
T ss_dssp             EEEEEGGGSCBCS
T ss_pred             EEEEEehhhccCC
Confidence            9999999987543

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.4e-15  Score=119.68  Aligned_cols=93  Identities=24%  Similarity=0.470  Sum_probs=78.2

Q ss_pred             eEEEEEEEeeecCCCCCC--C-CCCcEEEEEE-----CCeEeeeeeecC-CCCCcccceeEEEecC-CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDV--M-TSDPYVILAL-----GHQTVKTRVIKS-NLNPVWNESLMLSIPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~--~-~~dPyv~v~l-----~~~~~kT~~~~~-tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d  275 (314)
                      ..|.|+|++|++|+..+.  . .+||||++.+     +.++.+|+++++ ++||.|+|+|.|.+.. ....|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            369999999999986543  3 6899999998     357789998765 5799999999998855 4567999999999


Q ss_pred             CCCCCceeEEEEEeCcccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAAR  298 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~  298 (314)
                      .++.|++||++.++|..+..+..
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g~~  106 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQGYR  106 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCCCE
Confidence            99999999999999999977653

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=8.5e-16  Score=120.79  Aligned_cols=90  Identities=30%  Similarity=0.496  Sum_probs=78.7

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCC
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDT  276 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~  276 (314)
                      ..+.|.|+|++|++|+..+.. .+||||++.+   +.++.+|++++++.||.|||.|.|.+..   ....|.|+|||++.
T Consensus        16 ~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~~   95 (130)
T d1dqva1          16 GSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDR   95 (130)
T ss_dssp             SSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCS
T ss_pred             CCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcCC
Confidence            446899999999999988876 8899999998   4567899999999999999999999854   34679999999999


Q ss_pred             CCCCceeEEEEEeCccc
Q 021294          277 FTTDDFMGDAEIDIQPL  293 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l  293 (314)
                      ++++++||++.|++...
T Consensus        96 ~~~d~~iG~~~i~~~~~  112 (130)
T d1dqva1          96 FSRHDLIGQVVLDNLLE  112 (130)
T ss_dssp             SSCCCEEEEEECCCTTG
T ss_pred             CCCCceEEEEEECchhh
Confidence            99999999999986543

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=1.2e-16  Score=127.37  Aligned_cols=98  Identities=28%  Similarity=0.484  Sum_probs=81.9

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC--------------eEeeeeeecCCCCCcccceeEEEecC----CCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH--------------QTVKTRVIKSNLNPVWNESLMLSIPE----NIP  265 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~--------------~~~kT~~~~~tlnP~w~e~~~f~v~~----~~~  265 (314)
                      .|.|.|+|++|++|+..+.. .+||||++.+..              ++.+|++++++.||.|||.|.|....    ...
T Consensus        17 ~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~   96 (142)
T d1rh8a_          17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCCC
Confidence            46899999999999998876 899999999821              23578999999999999999997432    356


Q ss_pred             cEEEEEEEcCCCCCCceeEEEEEeCccccccccccCc
Q 021294          266 PLKVLVYDKDTFTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       266 ~L~i~v~d~d~~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      .|.|+|||++.++++++||++.|+|.++..+.....|
T Consensus        97 ~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W  133 (142)
T d1rh8a_          97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRW  133 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEE
T ss_pred             EEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEE
Confidence            7999999999999999999999999998765544433

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.3e-15  Score=119.54  Aligned_cols=103  Identities=26%  Similarity=0.444  Sum_probs=83.3

Q ss_pred             eeEEEEEEEeeecCCCCCCC--CCCcEEEEEE---CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM--TSDPYVILAL---GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~--~~dPyv~v~l---~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d  275 (314)
                      ...|.|+|++|++|+..+..  .+||||++.+   ..+..+|++++++.||.|||.|.|. +..   ....|.|+|||++
T Consensus        21 ~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~d  100 (138)
T d1ugka_          21 RKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFD  100 (138)
T ss_dssp             GTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEEC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEECC
Confidence            35799999999999988765  4799999999   5577899999999999999999996 433   2356999999999


Q ss_pred             CCCCCceeEEEEEeCccccccc-cccCcccccC
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAA-RACETPISMS  307 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~-~~~~~~~~~~  307 (314)
                      .++++++||++.++|.++.... ....++....
T Consensus       101 ~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~~  133 (138)
T d1ugka_         101 RFSRDDIIGEVLIPLSGIELSEGKMLMNREIIS  133 (138)
T ss_dssp             SSCCCCCCEEEEEECTTCCCTTCCEEEEEECBS
T ss_pred             CCCCCcEEEEEEEEcccccCCCCeEEEEeeccC
Confidence            9999999999999999985333 3333444333

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=1.1e-15  Score=119.40  Aligned_cols=97  Identities=23%  Similarity=0.402  Sum_probs=81.5

Q ss_pred             eeEEEEEEEeeecCCCCCC----CCCCcEEEEEECC---eEeeeeeecCCCCCcccceeEEEecC-CCCcEEEEEEEcCC
Q 021294          205 VGLIKVNVVKGTNLAVRDV----MTSDPYVILALGH---QTVKTRVIKSNLNPVWNESLMLSIPE-NIPPLKVLVYDKDT  276 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~----~~~dPyv~v~l~~---~~~kT~~~~~tlnP~w~e~~~f~v~~-~~~~L~i~v~d~d~  276 (314)
                      .+.|.|+|++|++|+....    +.+||||++.++.   ++.+|+++.++.||.|||.|.|.+.. ....|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            3689999999999987532    2789999999964   67899999999999999999999876 44679999999987


Q ss_pred             CCCCceeEEEEEeCccccccccccCc
Q 021294          277 FTTDDFMGDAEIDIQPLVTAARACET  302 (314)
Q Consensus       277 ~~~dd~iG~~~v~l~~l~~~~~~~~~  302 (314)
                      . .|++||++.++|.+|..+.....|
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~~~~  106 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKKEVP  106 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEEEEE
T ss_pred             C-CCCeEEEEEEEHHHccCCCeEEEE
Confidence            5 589999999999999766555433

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=7.9e-15  Score=115.96  Aligned_cols=92  Identities=29%  Similarity=0.451  Sum_probs=79.4

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|.|++|++|+..+.. .+||||++++     ...+.+|++++++.||.|||.|.|.+..   ....|.|.|||++
T Consensus        14 ~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~~~   93 (137)
T d2cm5a1          14 QGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD   93 (137)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeeeCC
Confidence            36899999999999988766 8999999998     2356789999999999999999999864   2457999999999


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      .++++++||++.+++..+..+
T Consensus        94 ~~~~~~~iG~~~i~l~~~~~~  114 (137)
T d2cm5a1          94 IGKSNDYIGGCQLGISAKGER  114 (137)
T ss_dssp             SSSCCEEEEEEEEETTCCHHH
T ss_pred             CCCCCCEEEEEEeCccccCcc
Confidence            999999999999999876543

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=4.9e-15  Score=117.50  Aligned_cols=92  Identities=28%  Similarity=0.395  Sum_probs=74.3

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEE--CC---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILAL--GH---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l--~~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|+|++|++|+..+.. .+||||++.+  +.   .+.+|++++++.||.|||.|.|.+..   ....|.|.|||++
T Consensus        14 ~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~~   93 (138)
T d1w15a_          14 TNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSE   93 (138)
T ss_dssp             TTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECC
T ss_pred             CCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeCC
Confidence            35799999999999988876 7899999998  22   34689999999999999999999854   2345999999999


Q ss_pred             CCCCCceeEEEEEeCcccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTA  296 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~  296 (314)
                      .++++++||++.+++.....+
T Consensus        94 ~~~~~~~iG~~~i~l~~~~~~  114 (138)
T d1w15a_          94 RGSRNEVIGRLVLGATAEGSG  114 (138)
T ss_dssp             TTSCCEEEEEEEESTTCCSHH
T ss_pred             CCCCCCEEEEEEEcchhCCch
Confidence            999999999999999875443

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.5e-14  Score=113.44  Aligned_cols=102  Identities=17%  Similarity=0.223  Sum_probs=82.2

Q ss_pred             eeEEEEEEEeeecCCCCCCCCCCcEEEEEEC----CeEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcCCC
Q 021294          205 VGLIKVNVVKGTNLAVRDVMTSDPYVILALG----HQTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKDTF  277 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~~~dPyv~v~l~----~~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d~~  277 (314)
                      .+.|.|+|++|++|+..  ..+||||++.+.    ....+|++++++.||.|+|.|.|.+..   ....|.|+|||++.+
T Consensus        25 ~~~L~V~v~~a~~L~~~--g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          25 KAELFVTRLEAVTSNHD--GGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRF  102 (138)
T ss_dssp             TTEEEEEEEEEECCCCS--SCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSS
T ss_pred             CCEEEEEEEEcCCCCCC--CCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeeccc
Confidence            46899999999999653  268999999993    245789999999999999999999865   346799999999999


Q ss_pred             CCCceeEEEEEeCccccccccccCcccccCCc
Q 021294          278 TTDDFMGDAEIDIQPLVTAARACETPISMSPC  309 (314)
Q Consensus       278 ~~dd~iG~~~v~l~~l~~~~~~~~~~~~~~~~  309 (314)
                      +.+++||++.|+|.++...... +.|..+...
T Consensus       103 ~~~~~iG~~~i~L~~l~~~~~~-~~W~~L~~~  133 (138)
T d1wfma_         103 SRHSVAGELRLGLDGTSVPLGA-AQWGELKTS  133 (138)
T ss_dssp             CTTSCSEEEEEESSSSSSCTTC-CEEEECCCC
T ss_pred             ccceeeeEEEEEhHHccCCCCc-eEeEeCCCC
Confidence            9999999999999998654444 344444333

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2.6e-14  Score=115.80  Aligned_cols=90  Identities=31%  Similarity=0.427  Sum_probs=77.9

Q ss_pred             eeEEEEEEEeeecCCCCCCC-CCCcEEEEEEC--C---eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEcC
Q 021294          205 VGLIKVNVVKGTNLAVRDVM-TSDPYVILALG--H---QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       205 ~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~--~---~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~d  275 (314)
                      .+.|.|.|++|++|+..+.. .+||||++++.  .   ...+|++++++.||.|||.|.|.+..   ....|.|.|||++
T Consensus        24 ~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~~  103 (157)
T d1uowa_          24 AGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD  103 (157)
T ss_dssp             TTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEcccC
Confidence            46899999999999988776 89999999983  2   34589999999999999999999865   2357999999999


Q ss_pred             CCCCCceeEEEEEeCcccc
Q 021294          276 TFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~  294 (314)
                      .++++++||++.|++....
T Consensus       104 ~~~~~~~iG~~~i~l~~~~  122 (157)
T d1uowa_         104 KIGKNDAIGKVFVGYNSTG  122 (157)
T ss_dssp             SSSCCCEEEEEEEETTCCH
T ss_pred             CCCCCceeEEEEEecccCC
Confidence            9999999999999997653

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.9e-14  Score=110.27  Aligned_cols=92  Identities=20%  Similarity=0.474  Sum_probs=73.9

Q ss_pred             eEEEEEEEeeecCCCCCCC-CCCcEEEEEE-----CCeEeeeeeecCCCCCcccceeEEE-ecC---CCCcEEEEEEEcC
Q 021294          206 GLIKVNVVKGTNLAVRDVM-TSDPYVILAL-----GHQTVKTRVIKSNLNPVWNESLMLS-IPE---NIPPLKVLVYDKD  275 (314)
Q Consensus       206 g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l-----~~~~~kT~~~~~tlnP~w~e~~~f~-v~~---~~~~L~i~v~d~d  275 (314)
                      +.|.|+|++|++|+..+.. .+||||++.+     ...+.+|++++++.||.|||.|.|. +..   ....|.|.|||++
T Consensus        14 ~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~d~~   93 (125)
T d2bwqa1          14 HQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQA   93 (125)
T ss_dssp             TEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC-
T ss_pred             CEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEEECC
Confidence            5899999999999988766 8899999998     2356899999999999999999997 432   2356999999998


Q ss_pred             CCC--CCceeEEEEEeCccccccc
Q 021294          276 TFT--TDDFMGDAEIDIQPLVTAA  297 (314)
Q Consensus       276 ~~~--~dd~iG~~~v~l~~l~~~~  297 (314)
                      .+.  .+++||++.++|.++....
T Consensus        94 ~~~~~~~~~iG~~~i~l~~~~~~~  117 (125)
T d2bwqa1          94 RVREEESEFLGEILIELETALLDD  117 (125)
T ss_dssp             ------CEEEEEEEEEGGGCCCSS
T ss_pred             CCCCCCCeeEEEEEEEchhcCCCC
Confidence            763  4569999999999987543

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=3.9e-14  Score=113.14  Aligned_cols=91  Identities=30%  Similarity=0.472  Sum_probs=78.8

Q ss_pred             eeeEEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecC---CCCcEEEEEEEc
Q 021294          204 FVGLIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPE---NIPPLKVLVYDK  274 (314)
Q Consensus       204 ~~g~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~---~~~~L~i~v~d~  274 (314)
                      ..|.|.|+|++|++|+..+.. .+||||++.+..     .+.+|++++++.||.|||.|.|.+..   ....|.|.|||+
T Consensus        18 ~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d~   97 (145)
T d1dqva2          18 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY   97 (145)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             CCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEec
Confidence            447899999999999987766 789999999843     25689999999999999999998864   346799999999


Q ss_pred             CCCCCCceeEEEEEeCcccc
Q 021294          275 DTFTTDDFMGDAEIDIQPLV  294 (314)
Q Consensus       275 d~~~~dd~iG~~~v~l~~l~  294 (314)
                      +.++++++||.+.|++..+.
T Consensus        98 ~~~~~~~~iG~~~i~l~~~~  117 (145)
T d1dqva2          98 DCIGHNEVIGVCRVGPEAAD  117 (145)
T ss_dssp             CSSSCCEEEEECCCSSCTTC
T ss_pred             CCCCCCcEEEEEEECchHcC
Confidence            99999999999999998764

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.2e-11  Score=95.51  Aligned_cols=87  Identities=26%  Similarity=0.540  Sum_probs=66.8

Q ss_pred             EEEEEEEeeecCCCCCCCCCCcEEEEEE-C-----CeEeeeee--ecCCCCCcccce-eEE-EecC-CCCcEEEEEEEcC
Q 021294          207 LIKVNVVKGTNLAVRDVMTSDPYVILAL-G-----HQTVKTRV--IKSNLNPVWNES-LML-SIPE-NIPPLKVLVYDKD  275 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~~~dPyv~v~l-~-----~~~~kT~~--~~~tlnP~w~e~-~~f-~v~~-~~~~L~i~v~d~d  275 (314)
                      .|.|+|++|++|+...   .||||++.+ |     ..+.+|++  .++++||.|||. |.| .+.. ....|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~~---~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSERS---VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSSC---CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCCC---CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            5899999999998654   699999998 2     23344443  456899999976 444 3333 4457999999975


Q ss_pred             CCCCCceeEEEEEeCcccccccccc
Q 021294          276 TFTTDDFMGDAEIDIQPLVTAARAC  300 (314)
Q Consensus       276 ~~~~dd~iG~~~v~l~~l~~~~~~~  300 (314)
                          +++||++.++|+.|..|.++.
T Consensus        79 ----~~~lG~~~ipl~~l~~GyR~v   99 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNSGYHHL   99 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCCEEEEE
T ss_pred             ----CCEEEEEEEEcccCcCCceEE
Confidence                789999999999999887654

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.20  E-value=2.7e-11  Score=93.62  Aligned_cols=84  Identities=12%  Similarity=0.242  Sum_probs=63.6

Q ss_pred             EEEEEEEeeecCCCCCCC-CCCcEEEEEECC-----eEeeeeeecCCCCCcccceeEEEecCCCCcEEEEEEEcCCCCCC
Q 021294          207 LIKVNVVKGTNLAVRDVM-TSDPYVILALGH-----QTVKTRVIKSNLNPVWNESLMLSIPENIPPLKVLVYDKDTFTTD  280 (314)
Q Consensus       207 ~L~V~v~~a~~L~~~d~~-~~dPyv~v~l~~-----~~~kT~~~~~tlnP~w~e~~~f~v~~~~~~L~i~v~d~d~~~~d  280 (314)
                      .|.|.+....--+....+ .+||||+|.+..     ...+|+++++|+||.|||+|.|.+.+ ...|.|.|||+|    +
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d   78 (123)
T d1bdya_           4 FLRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----E   78 (123)
T ss_dssp             EEEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----T
T ss_pred             eEEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----c
Confidence            344444333222323334 789999999944     24578899999999999999999975 467999999986    6


Q ss_pred             ceeEEEEEeCccccc
Q 021294          281 DFMGDAEIDIQPLVT  295 (314)
Q Consensus       281 d~iG~~~v~l~~l~~  295 (314)
                      +++|.+.+++..|..
T Consensus        79 ~~~g~~~i~l~~l~~   93 (123)
T d1bdya_          79 DPMSEVTVGVSVLAE   93 (123)
T ss_dssp             EEEEEEEEEHHHHHH
T ss_pred             cccCccEEehhheee
Confidence            899999999998864

>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]}

class: Small proteins
fold: ArfGap/RecO-like zinc finger
superfamily: ArfGap/RecO-like zinc finger
family: RecO C-terminal domain-like
domain: Recombinational repair protein RecO, C-terminal domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=91.31  E-value=0.044  Score=42.13  Aligned_cols=31  Identities=39%  Similarity=0.934  Sum_probs=28.8

Q ss_pred             CCCCCCCcCCCCCCCCeEEecccceechhhH
Q 021294           26 QPGNRHCADCGSPDPKWVSLSTGVFICIKCS   56 (314)
Q Consensus        26 ~~~N~~C~dC~~~~p~w~s~~~g~~~C~~C~   56 (314)
                      .|.-..|+.||.+++.|.+..-|.++|..|.
T Consensus        67 ~P~l~~C~~cg~~~~~~f~~~~Gg~~C~~c~   97 (157)
T d1u5ka2          67 IPQTARCARCGAPDPEHPDPLGGQLLCSKCA   97 (157)
T ss_dssp             CCCCSBCTTTCCBSCCEECTTTSSEECTTTC
T ss_pred             CCChhhHhcCCCCCCCcccccCCeeECCCCC
Confidence            5788999999999999999999999999994

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.98  E-value=0.19  Score=28.81  Aligned_cols=36  Identities=33%  Similarity=0.839  Sum_probs=30.5

Q ss_pred             CCCCcCCCCC-CCCeEEecccceechhhHHHHhhcCC
Q 021294           29 NRHCADCGSP-DPKWVSLSTGVFICIKCSGIHRSLGV   64 (314)
Q Consensus        29 N~~C~dC~~~-~p~w~s~~~g~~~C~~C~~~Hr~lg~   64 (314)
                      -+.|..||.. -|.|=.-.-|-.+|-.|.-.+|..|.
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTSCEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCCCCCcccccCCCCCEeeHHhHHHHHHhCC
Confidence            3689999985 58999988999999999888887664

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.27  E-value=0.039  Score=30.69  Aligned_cols=30  Identities=17%  Similarity=0.364  Sum_probs=24.8

Q ss_pred             CCCCCCcCCCCCC-CCeEEecccceechhhH
Q 021294           27 PGNRHCADCGSPD-PKWVSLSTGVFICIKCS   56 (314)
Q Consensus        27 ~~N~~C~dC~~~~-p~w~s~~~g~~~C~~C~   56 (314)
                      +.-..|-+||..- -+|.+.+|+--||.+|.
T Consensus         3 ~dy~~C~eCg~~F~DSYL~~~Fd~~vCD~CR   33 (36)
T d1d4ua2           3 FDYVICEECGKEFMDSYLMDHFDLPTCDDCR   33 (36)
T ss_dssp             CCCEECTTTCCEESCSSSTTTTSCCCCTTTC
T ss_pred             ccHHHHHHhCcHHHHHHHHHcCCchhccccc
Confidence            3446799999864 48999999999999994