Citrus Sinensis ID: 021305

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK
cccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccc
ccHccHHHHHHHHHHccccccccHHHHcHHHHHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHcccHHHccHHHHHHHHHHcEcccccEEccccccEcHHHHHHHHHHHHHHccHHHccHHHHHHHHHHcEcccccEcccccccccHHHHHHHHHHHHHcccHHHccHHHHHHHHHccEcccccEcccccccccHHHHHHHHHHHHHHccHHHccHHHHHHHHHccEccccccEcccccEccEHHHHHHHHHHHHHccccccccEccccccEHHHHHHcHcccc
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDIlgkldavdeEDVISWILKCqdesggfagnighdphVLYTLSAVQVLALFDkvdildadkvSNYIVGLqnedgsfsgdiwgevdTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKnldggfgctpggeshsgqiFCCVGALAIAGALHHVDKDLLGWWLCERQvksgglngrpeklpdvCYSWWVLSSLIMIDRVHWINKDKLVKFILDCqdmenggisdrpddavDVFHTYFGVAglslleypglkpidpayalpvdvVNRIFFSKK
mgelaadkhvkyiisvekkkdsfESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKsgglngrpeklPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK
********HVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFF***
*GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFS**
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK
MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
P53611331 Geranylgeranyl transferas yes no 0.974 0.924 0.584 1e-113
Q5E9B3331 Geranylgeranyl transferas yes no 0.974 0.924 0.581 1e-112
P53612339 Geranylgeranyl transferas yes no 0.974 0.902 0.584 1e-112
Q08603331 Geranylgeranyl transferas yes no 0.974 0.924 0.581 1e-112
B0G172339 Probable geranylgeranyl t yes no 0.977 0.905 0.595 1e-104
P20133325 Geranylgeranyl transferas yes no 0.974 0.941 0.555 1e-93
P46960311 Geranylgeranyl transferas yes no 0.984 0.993 0.491 2e-91
P41992335 Probable geranylgeranyl t yes no 0.952 0.892 0.498 4e-89
O93830341 Geranylgeranyl transferas N/A no 0.958 0.882 0.507 9e-82
O13782382 Protein farnesyltransfera no no 0.891 0.732 0.328 4e-40
>sp|P53611|PGTB2_HUMAN Geranylgeranyl transferase type-2 subunit beta OS=Homo sapiens GN=RABGGTB PE=1 SV=2 Back     alignment and function desciption
 Score =  409 bits (1050), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 179/306 (58%), Positives = 239/306 (78%)

Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  ++ E+++++I  
Sbjct: 18  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGIYWGLTVMDLMGQLHRMNREEILAFIKS 77

Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D ++++D +KV  Y+ GLQ EDGSF+GDI
Sbjct: 78  CQHECGGISASIGHDPHLLYTLSAVQILTLYDSINVIDVNKVVEYVKGLQKEDGSFAGDI 137

Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 138 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 197

Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 198 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 257

Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
           I+++KL  FIL CQD E GG +DRP D VD FHT FG+AGLSLL    +KP++P + +P 
Sbjct: 258 IDREKLRNFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVNPVFCMPE 317

Query: 304 DVVNRI 309
           +V+ R+
Sbjct: 318 EVLQRV 323
Catalyzes the transfer of a geranyl-geranyl moiety from geranyl-geranyl pyrophosphate to both cysteines in Rab proteins with an -XXCC, -XCXC and -CCXX C-terminal, such as RAB1A, RAB3A and RAB5A respectively.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 0
>sp|Q5E9B3|PGTB2_BOVIN Geranylgeranyl transferase type-2 subunit beta OS=Bos taurus GN=RABGGTB PE=2 SV=1 Back     alignment and function description
>sp|P53612|PGTB2_MOUSE Geranylgeranyl transferase type-2 subunit beta OS=Mus musculus GN=Rabggtb PE=1 SV=2 Back     alignment and function description
>sp|Q08603|PGTB2_RAT Geranylgeranyl transferase type-2 subunit beta OS=Rattus norvegicus GN=Rabggtb PE=1 SV=1 Back     alignment and function description
>sp|B0G172|PGTB2_DICDI Probable geranylgeranyl transferase type-2 subunit beta OS=Dictyostelium discoideum GN=rabggtb PE=3 SV=1 Back     alignment and function description
>sp|P20133|PGTB2_YEAST Geranylgeranyl transferase type-2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BET2 PE=1 SV=3 Back     alignment and function description
>sp|P46960|PGTB2_SCHPO Geranylgeranyl transferase type-2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ptb1 PE=3 SV=1 Back     alignment and function description
>sp|P41992|GGTB2_CAEEL Probable geranylgeranyl transferase type-2 subunit beta OS=Caenorhabditis elegans GN=ggtb-1 PE=3 SV=2 Back     alignment and function description
>sp|O93830|PGTB2_CANAX Geranylgeranyl transferase type-2 subunit beta OS=Candida albicans GN=BET2 PE=3 SV=1 Back     alignment and function description
>sp|O13782|FNTB_SCHPO Protein farnesyltransferase subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cpp1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
224125104313 predicted protein [Populus trichocarpa] 0.996 1.0 0.878 1e-163
449436108317 PREDICTED: geranylgeranyl transferase ty 1.0 0.990 0.843 1e-160
225436251317 PREDICTED: geranylgeranyl transferase ty 0.996 0.987 0.840 1e-159
363806846317 uncharacterized protein LOC100793642 [Gl 1.0 0.990 0.840 1e-159
34148075317 putative Rab geranylgeranyl transferase 1.0 0.990 0.837 1e-158
225447413317 PREDICTED: geranylgeranyl transferase ty 0.996 0.987 0.827 1e-157
356512465320 PREDICTED: geranylgeranyl transferase ty 0.996 0.978 0.821 1e-155
115477242319 Os08g0512300 [Oryza sativa Japonica Grou 0.996 0.981 0.805 1e-150
357148429319 PREDICTED: geranylgeranyl transferase ty 0.996 0.981 0.796 1e-150
297807269313 beta subunit of rab geranylgeranyltransf 0.996 1.0 0.833 1e-150
>gi|224125104|ref|XP_002319501.1| predicted protein [Populus trichocarpa] gi|222857877|gb|EEE95424.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  580 bits (1495), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 275/313 (87%), Positives = 297/313 (94%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHVKYI+SVEK+KDSFESVV+EHLR+NGAYWGL TLD+LGKLDA+D  +VI W
Sbjct: 1   MGELVVDKHVKYILSVEKRKDSFESVVLEHLRMNGAYWGLATLDLLGKLDALDSNEVIEW 60

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           I+KCQ ESGGFAGNIGHDPH+LYTLSAVQVLALFDK+++LDADKV+NYI GLQNEDGSFS
Sbjct: 61  IMKCQHESGGFAGNIGHDPHMLYTLSAVQVLALFDKLNVLDADKVANYISGLQNEDGSFS 120

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGEVD+RFSY+AICCLSIL RLDKINV+KAV YI SCKN+DGGFGCTPGGESH+GQI
Sbjct: 121 GDEWGEVDSRFSYLAICCLSILHRLDKINVEKAVNYIASCKNVDGGFGCTPGGESHAGQI 180

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR
Sbjct: 181 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240

Query: 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
           VHWINKDKLVKFIL+CQD ENGGISDRPDDAVDV+HTYFGVAGLSLLEYPGLK IDPA+A
Sbjct: 241 VHWINKDKLVKFILNCQDTENGGISDRPDDAVDVYHTYFGVAGLSLLEYPGLKAIDPAHA 300

Query: 301 LPVDVVNRIFFSK 313
           LPVDVVNRIFF K
Sbjct: 301 LPVDVVNRIFFQK 313

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449436108|ref|XP_004135836.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus] gi|449490992|ref|XP_004158768.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225436251|ref|XP_002275861.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147860391|emb|CAN82570.1| hypothetical protein VITISV_016117 [Vitis vinifera] gi|296090220|emb|CBI40039.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|363806846|ref|NP_001242036.1| uncharacterized protein LOC100793642 [Glycine max] gi|255635594|gb|ACU18147.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|34148075|gb|AAQ62584.1| putative Rab geranylgeranyl transferase type II beta subunit [Glycine max] Back     alignment and taxonomy information
>gi|225447413|ref|XP_002281543.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta [Vitis vinifera] gi|147821440|emb|CAN74579.1| hypothetical protein VITISV_024797 [Vitis vinifera] gi|296081232|emb|CBI17976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356512465|ref|XP_003524939.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like [Glycine max] Back     alignment and taxonomy information
>gi|115477242|ref|NP_001062217.1| Os08g0512300 [Oryza sativa Japonica Group] gi|42408800|dbj|BAD10061.1| putative Rab geranylgeranyltransferase, beta subunit [Oryza sativa Japonica Group] gi|113624186|dbj|BAF24131.1| Os08g0512300 [Oryza sativa Japonica Group] gi|215717111|dbj|BAG95474.1| unnamed protein product [Oryza sativa Japonica Group] gi|218201440|gb|EEC83867.1| hypothetical protein OsI_29853 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|357148429|ref|XP_003574760.1| PREDICTED: geranylgeranyl transferase type-2 subunit beta-like isoform 1 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|297807269|ref|XP_002871518.1| beta subunit of rab geranylgeranyltransferase [Arabidopsis lyrata subsp. lyrata] gi|297317355|gb|EFH47777.1| beta subunit of rab geranylgeranyltransferase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2177058321 RGTB1 "RAB geranylgeranyl tran 0.996 0.975 0.824 1.5e-147
TAIR|locus:2088614317 RGTB2 "RAB geranylgeranyl tran 0.990 0.981 0.808 9.9e-142
ZFIN|ZDB-GENE-040426-2116331 rabggtb "Rab geranylgeranyltra 0.974 0.924 0.601 6.3e-108
UNIPROTKB|P53611331 RABGGTB "Geranylgeranyl transf 0.974 0.924 0.584 2.7e-107
UNIPROTKB|F1P6X0331 RABGGTB "Uncharacterized prote 0.974 0.924 0.581 1.5e-106
UNIPROTKB|G8JKY6331 RABGGTB "Geranylgeranyl transf 0.974 0.924 0.581 1.9e-106
UNIPROTKB|Q5E9B3331 RABGGTB "Geranylgeranyl transf 0.974 0.924 0.581 1.9e-106
UNIPROTKB|F1LSM6331 Rabggtb "Geranylgeranyl transf 0.974 0.924 0.584 2.5e-106
MGI|MGI:99537339 Rabggtb "RAB geranylgeranyl tr 0.974 0.902 0.584 5.1e-106
RGD|3530331 Rabggtb "Rab geranylgeranyltra 0.974 0.924 0.581 6.5e-106
TAIR|locus:2177058 RGTB1 "RAB geranylgeranyl transferase beta subunit 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1441 (512.3 bits), Expect = 1.5e-147, P = 1.5e-147
 Identities = 258/313 (82%), Positives = 290/313 (92%)

Query:     1 MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
             M +L ADKHV+YI+  EKKK+SFESVVM+HLR+NGAYWGLTTLD+L KL  V EE+VISW
Sbjct:     9 MVQLVADKHVRYILMAEKKKESFESVVMDHLRMNGAYWGLTTLDLLDKLGCVSEEEVISW 68

Query:    61 ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
             ++ CQ ESGGFAGN GHDPH+LYTLSAVQ+LALFDK++ILD  KVS+Y+  LQNEDGSFS
Sbjct:    69 LMTCQHESGGFAGNTGHDPHILYTLSAVQILALFDKINILDIGKVSSYVAKLQNEDGSFS 128

Query:   121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
             GD+WGE+DTRFSYIAICCLSIL+ LDKINV+KAV+YIVSCKNLDGGFGCTPG ESH+GQI
Sbjct:   129 GDMWGEIDTRFSYIAICCLSILKCLDKINVEKAVKYIVSCKNLDGGFGCTPGAESHAGQI 188

Query:   181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
             FCCVGALAI G+LHHVDKD LGWWLCERQ+K+GGLNGRPEKL DVCYSWWVLSSLIMIDR
Sbjct:   189 FCCVGALAITGSLHHVDKDSLGWWLCERQLKAGGLNGRPEKLADVCYSWWVLSSLIMIDR 248

Query:   241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
             VHWI+K KLVKFILDCQD++NGGISDRP+DAVD+FHTYFGVAGLSLLEYPG+K IDPAYA
Sbjct:   249 VHWIDKAKLVKFILDCQDLDNGGISDRPEDAVDIFHTYFGVAGLSLLEYPGVKVIDPAYA 308

Query:   301 LPVDVVNRIFFSK 313
             LPVDVVNRI F+K
Sbjct:   309 LPVDVVNRIIFTK 321
GO:0003824 "catalytic activity" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2088614 RGTB2 "RAB geranylgeranyl transferase beta subunit 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2116 rabggtb "Rab geranylgeranyltransferase, beta subunit" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P53611 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6X0 RABGGTB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|G8JKY6 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9B3 RABGGTB "Geranylgeranyl transferase type-2 subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1LSM6 Rabggtb "Geranylgeranyl transferase type-2 subunit beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:99537 Rabggtb "RAB geranylgeranyl transferase, b subunit" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3530 Rabggtb "Rab geranylgeranyltransferase, beta subunit" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O93830PGTB2_CANAX2, ., 5, ., 1, ., 6, 00.50770.95850.8826N/Ano
Q5E9B3PGTB2_BOVIN2, ., 5, ., 1, ., 6, 00.58160.97450.9244yesno
Q08603PGTB2_RAT2, ., 5, ., 1, ., 6, 00.58160.97450.9244yesno
P20133PGTB2_YEAST2, ., 5, ., 1, ., 6, 00.55590.97450.9415yesno
P46960PGTB2_SCHPO2, ., 5, ., 1, ., 6, 00.49190.98400.9935yesno
B0G172PGTB2_DICDI2, ., 5, ., 1, ., 6, 00.59540.97770.9056yesno
P41992GGTB2_CAEEL2, ., 5, ., 1, ., 6, 00.49830.95220.8925yesno
P53612PGTB2_MOUSE2, ., 5, ., 1, ., 6, 00.58490.97450.9026yesno
P53611PGTB2_HUMAN2, ., 5, ., 1, ., 6, 00.58490.97450.9244yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.600.946
3rd Layer2.5.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
PLN03201316 PLN03201, PLN03201, RAB geranylgeranyl transferase 0.0
cd02894287 cd02894, GGTase-II, Geranylgeranyltransferase type 1e-180
cd02890286 cd02890, PTase, Protein prenyltransferase (PTase) 1e-142
COG5029342 COG5029, CAL1, Prenyltransferase, beta subunit [Po 1e-125
cd00688300 cd00688, ISOPREN_C2_like, This group contains clas 7e-76
cd02895307 cd02895, GGTase-I, Geranylgeranyltransferase types 6e-72
cd02893299 cd02893, FTase, Protein farnesyltransferase (FTase 2e-66
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 2e-35
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 2e-22
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 9e-15
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 1e-12
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-12
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 1e-11
pfam13249112 pfam13249, Prenyltrans_2, Prenyltransferase-like 4e-11
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 3e-10
PLN02710439 PLN02710, PLN02710, farnesyltranstransferase subun 6e-10
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 6e-10
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 1e-09
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 1e-09
pfam0043244 pfam00432, Prenyltrans, Prenyltransferase and squa 2e-09
pfam13243109 pfam13243, Prenyltrans_1, Prenyltransferase-like 1e-05
TIGR01787621 TIGR01787, squalene_cyclas, squalene/oxidosqualene 2e-04
cd02892634 cd02892, SQCY_1, Squalene cyclase (SQCY) domain su 4e-04
COG1689274 COG1689, COG1689, Uncharacterized protein conserve 4e-04
cd02889348 cd02889, SQCY, Squalene cyclase (SQCY) domain; fou 5e-04
cd00688 300 cd00688, ISOPREN_C2_like, This group contains clas 6e-04
>gnl|CDD|215630 PLN03201, PLN03201, RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information 
 Score =  664 bits (1714), Expect = 0.0
 Identities = 263/312 (84%), Positives = 292/312 (93%)

Query: 1   MGELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISW 60
           MGEL  DKHV+YI S+EKKKDSFESVVMEHLR+NGAYWGLT LD+LGKLD VD ++V+SW
Sbjct: 5   MGELVVDKHVRYIKSLEKKKDSFESVVMEHLRMNGAYWGLTALDLLGKLDDVDRDEVVSW 64

Query: 61  ILKCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFS 120
           +++CQ ESGGF GN GHDPH+LYTLSAVQ+LALFD++D+LDADKV++Y+ GLQNEDGSFS
Sbjct: 65  VMRCQHESGGFGGNTGHDPHILYTLSAVQILALFDRLDLLDADKVASYVAGLQNEDGSFS 124

Query: 121 GDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQI 180
           GD WGE+DTRFSY A+CCLS+L+RLDKINV+KAV+YIVSCKN DGGFGCTPGGESH+GQI
Sbjct: 125 GDEWGEIDTRFSYCALCCLSLLKRLDKINVEKAVDYIVSCKNFDGGFGCTPGGESHAGQI 184

Query: 181 FCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDR 240
           FCCVGALAI G+LHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLI+IDR
Sbjct: 185 FCCVGALAITGSLHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIIIDR 244

Query: 241 VHWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYA 300
           VHWI+KDKL KFILDCQD ENGGISDRPDDAVDVFHT+FGVAGLSLL YPGLKPIDPAYA
Sbjct: 245 VHWIDKDKLAKFILDCQDDENGGISDRPDDAVDVFHTFFGVAGLSLLGYPGLKPIDPAYA 304

Query: 301 LPVDVVNRIFFS 312
           LPVDVVNRI   
Sbjct: 305 LPVDVVNRIGLR 316

Length = 316
>gnl|CDD|239224 cd02894, GGTase-II, Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239220 cd02890, PTase, Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|227362 COG5029, CAL1, Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>gnl|CDD|239225 cd02895, GGTase-I, Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|239223 cd02893, FTase, Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|222007 pfam13249, Prenyltrans_2, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|215380 PLN02710, PLN02710, farnesyltranstransferase subunit beta Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|109488 pfam00432, Prenyltrans, Prenyltransferase and squalene oxidase repeat Back     alignment and domain information
>gnl|CDD|205423 pfam13243, Prenyltrans_1, Prenyltransferase-like Back     alignment and domain information
>gnl|CDD|233578 TIGR01787, squalene_cyclas, squalene/oxidosqualene cyclases Back     alignment and domain information
>gnl|CDD|239222 cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|224603 COG1689, COG1689, Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>gnl|CDD|239219 cd02889, SQCY, Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>gnl|CDD|238362 cd00688, ISOPREN_C2_like, This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
PLN02710439 farnesyltranstransferase subunit beta 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
cd02895307 GGTase-I Geranylgeranyltransferase types I (GGTase 100.0
cd02894287 GGTase-II Geranylgeranyltransferase type II (GGTas 100.0
PLN03201316 RAB geranylgeranyl transferase beta-subunit; Provi 100.0
cd02893299 FTase Protein farnesyltransferase (FTase)_like pro 100.0
PLN02710 439 farnesyltranstransferase subunit beta 100.0
cd02890286 PTase Protein prenyltransferase (PTase) domain, be 100.0
KOG0366329 consensus Protein geranylgeranyltransferase type I 100.0
COG5029342 CAL1 Prenyltransferase, beta subunit [Posttranslat 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 100.0
KOG0367347 consensus Protein geranylgeranyltransferase Type I 100.0
KOG0365423 consensus Beta subunit of farnesyltransferase [Pos 100.0
cd00688300 ISOPREN_C2_like This group contains class II terpe 99.97
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.96
COG1689274 Uncharacterized protein conserved in archaea [Func 99.94
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.92
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.92
TIGR03463634 osq_cycl 2,3-oxidosqualene cyclase. This model ide 99.92
cd02889348 SQCY Squalene cyclase (SQCY) domain; found in clas 99.91
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.91
TIGR01507635 hopene_cyclase squalene-hopene cyclase. SHC is an 99.91
cd02892634 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; 99.91
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.9
PLN02993763 lupeol synthase 99.89
PLN03012759 Camelliol C synthase 99.88
TIGR01787621 squalene_cyclas squalene/oxidosqualene cyclases. T 99.88
PLN03012759 Camelliol C synthase 99.86
PLN02993763 lupeol synthase 99.85
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.84
PF13249113 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 99.79
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.75
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.74
cd02896297 complement_C3_C4_C5 Proteins similar to C3, C4 and 99.74
cd02897292 A2M_2 Proteins similar to alpha2-macroglobulin (al 99.73
COG1689274 Uncharacterized protein conserved in archaea [Func 99.73
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.44
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.43
cd02891282 A2M_like Proteins similar to alpha2-macroglobulin 99.4
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.32
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.31
) (2,3-epoxysqualene-cycloartenol cyclase) is a plant enzyme that catalyzes the cyclization of (S)-2,3-epoxysqualene to cycloartenol.; GO: 0003824 catalytic activity; PDB: 2IEJ_B 1LD7_B 1LD8_B 2H6G_B 1TN6_B 1S63_B 1MZC_B 2H6I_B 2H6F_B 1JCQ_B ...." target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00432">PF0043244 Prenyltrans: Prenyltransferase and squalene oxidas 99.27
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.26
PF07678246 A2M_comp: A-macroglobulin complement component; In 99.26
PF13243109 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 99.23
KOG0497760 consensus Oxidosqualene-lanosterol cyclase and rel 99.2
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.95
COG1657517 SqhC Squalene cyclase [Lipid metabolism] 98.9
PLN02592 800 ent-copalyl diphosphate synthase 98.32
PLN02279 784 ent-kaur-16-ene synthase 98.04
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 97.58
TIGR02474290 pec_lyase pectate lyase, PelA/Pel-15E family. Memb 97.38
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 96.87
PLN02592 800 ent-copalyl diphosphate synthase 96.64
PF05817 636 Ribophorin_II: Oligosaccharyltransferase subunit R 96.27
KOG1366 1436 consensus Alpha-macroglobulin [Posttranslational m 95.85
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 95.43
PLN02279 784 ent-kaur-16-ene synthase 95.14
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 94.41
PF09492289 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 90.93
PF01122326 Cobalamin_bind: Eukaryotic cobalamin-binding prote 90.42
TIGR01577616 oligosac_amyl oligosaccharide amylase. The name of 83.95
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-79  Score=518.56  Aligned_cols=312  Identities=68%  Similarity=1.280  Sum_probs=303.6

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021305            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (314)
Q Consensus         2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~   81 (314)
                      ++|.++||++||...-++.-+|.++..++.+++..||.+.+|++|++.....+++++.|+++||+.+|||++.||++||+
T Consensus        16 ~~Ll~dkH~~yI~~~~~kk~~fey~l~EhlRmsgiYWg~tal~ll~~le~~~~eeiv~~v~~C~~~~GGfa~~~Ghd~hl   95 (329)
T KOG0366|consen   16 DELLKDKHARYIESYGKKKDSFEYCLTEHLRMSGIYWGLTALDLLGQLERMSREEIVSFVLSCQHEDGGFAGCPGHDPHL   95 (329)
T ss_pred             HHHHHHHHHHHHHHhccccchHHHHHHhHhhhcchhhhhhHHHHhcccchhhHHHHHHHHHheecCCCCcCCCCCCChHH
Confidence            46789999999999888888999999999999999999999999998877789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021305           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (314)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q  161 (314)
                      .+|++|+++|.+.+..+.+|++++..|+..+|++||+|.+..++|.|+|++|||+++|++|+.++.++++++++|+++|-
T Consensus        96 l~TlsAvQiL~~ydsi~~~d~d~v~~yi~gLq~edGsF~gD~wGEvDTRfs~~av~~L~lLg~ld~~nve~aVd~~~~Cy  175 (329)
T KOG0366|consen   96 LYTLSAVQILALYDSINVLDRDKVASYIKGLQQEDGSFSGDIWGEVDTRFSYCAVACLALLGKLDTINVEKAVDFVLSCY  175 (329)
T ss_pred             HHHHHHHHHHHHHcccccccHHHHHHHHHhhcCcCCcccCCcccccchhhhHHHHHHHHHHhhHHHhhHHHHHHHHHhhc
Confidence            99999999999999989999999999999999999999999999999999999999999999998999999999999999


Q ss_pred             CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021305          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV  241 (314)
Q Consensus       162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~  241 (314)
                      |-|||||..||.|||+++.||.+++|+++++++.+|.+.+..||..||.+.||.+|||.|.||+||+||++++|.++|+.
T Consensus       176 N~DGGFG~~pGaESHagqifcCvgaLai~~~L~~vd~d~lgwwlceRQ~~sGGLNGRpeKlpDVCYSwWvlsSL~iigrl  255 (329)
T KOG0366|consen  176 NFDGGFGCRPGAESHAGQIFCCVGALAITGKLHLVDRDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLSSLAIIGRL  255 (329)
T ss_pred             ccCCCcCCCCCcccccceehhhHHHHHHccchhhcCHHHHHHHHHhccCCCCCCCCCcccCcchhhHHHHHhHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhccccC
Q 021305          242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK  313 (314)
Q Consensus       242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  313 (314)
                      +|+|.+++.+||++||+.+.|||+++|++.+|++||++++++|+++|+++|++|||.|++|++++++++|..
T Consensus       256 ~wId~ekL~~FIl~cQd~~~GGfsDRpgd~~D~fHt~FgiAGLSLlg~~~l~~idP~fcmp~~v~~r~~~~~  327 (329)
T KOG0366|consen  256 HWIDREKLTKFILACQDEETGGFSDRPGDEVDIFHTLFGIAGLSLLGYPGLKPIDPIFCMPKEVLQRIKVTP  327 (329)
T ss_pred             hhccHHHHHHHHHhcCCCCCCCcCCCCCCcccHHHHHHHHhhHhhhCCCCceecCCcccCcHHHHhhhcccc
Confidence            999999999999999997789999999999999999999999999999999999999999999999999864

>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02895 GGTase-I Geranylgeranyltransferase types I (GGTase-I)-like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>cd02894 GGTase-II Geranylgeranyltransferase type II (GGTase-II)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN03201 RAB geranylgeranyl transferase beta-subunit; Provisional Back     alignment and domain information
>cd02893 FTase Protein farnesyltransferase (FTase)_like proteins containing the protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>PLN02710 farnesyltranstransferase subunit beta Back     alignment and domain information
>cd02890 PTase Protein prenyltransferase (PTase) domain, beta subunit (alpha 6 - alpha 6 barrel fold) Back     alignment and domain information
>KOG0366 consensus Protein geranylgeranyltransferase type II, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5029 CAL1 Prenyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>KOG0367 consensus Protein geranylgeranyltransferase Type I, beta subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0365 consensus Beta subunit of farnesyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00688 ISOPREN_C2_like This group contains class II terpene cyclases, protein prenyltransferases beta subunit, two broadly specific proteinase inhibitors alpha2-macroglobulin (alpha (2)-M) and pregnancy zone protein (PZP) and, the C3 C4 and C5 components of vertebrate complement Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>TIGR03463 osq_cycl 2,3-oxidosqualene cyclase Back     alignment and domain information
>cd02889 SQCY Squalene cyclase (SQCY) domain; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01507 hopene_cyclase squalene-hopene cyclase Back     alignment and domain information
>cd02892 SQCY_1 Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>TIGR01787 squalene_cyclas squalene/oxidosqualene cyclases Back     alignment and domain information
>PLN03012 Camelliol C synthase Back     alignment and domain information
>PLN02993 lupeol synthase Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>PF13249 Prenyltrans_2: Prenyltransferase-like; PDB: 1O6R_B 1O6Q_B 1H35_C 1H3A_C 1SQC_A 1UMP_A 1O6H_C 1O79_B 1GSZ_C 1H37_C Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>cd02896 complement_C3_C4_C5 Proteins similar to C3, C4 and C5 of vertebrate complement Back     alignment and domain information
>cd02897 A2M_2 Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>COG1689 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>cd02891 A2M_like Proteins similar to alpha2-macroglobulin (alpha (2)-M) Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF00432 Prenyltrans: Prenyltransferase and squalene oxidase repeat This Prosite family is a subset of the Pfam family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family Back     alignment and domain information
>PF13243 Prenyltrans_1: Prenyltransferase-like; PDB: 3SDR_A 3SAE_A 3SDV_A 3SDT_A 3SDQ_A 3SDU_A Back     alignment and domain information
>KOG0497 consensus Oxidosqualene-lanosterol cyclase and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>COG1657 SqhC Squalene cyclase [Lipid metabolism] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>TIGR02474 pec_lyase pectate lyase, PelA/Pel-15E family Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF05817 Ribophorin_II: Oligosaccharyltransferase subunit Ribophorin II; InterPro: IPR008814 This family consists of several eukaryotic Ribophorin II (RPN2) proteins Back     alignment and domain information
>KOG1366 consensus Alpha-macroglobulin [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>PF09492 Pec_lyase: Pectic acid lyase; InterPro: IPR012669 Members of this family are isozymes of pectate lyase (4 Back     alignment and domain information
>PF01122 Cobalamin_bind: Eukaryotic cobalamin-binding protein; InterPro: IPR002157 Cobalamin (Cbl or vitamin B12) is only accessible through diet in mammals Back     alignment and domain information
>TIGR01577 oligosac_amyl oligosaccharide amylase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3pz1_B330 Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) 1e-113
1dce_B331 Crystal Structure Of Rab Geranylgeranyltransferase 1e-113
1n4p_B377 Protein Geranylgeranyltransferase Type-I Complexed 7e-36
2h6i_B437 W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTAN 7e-34
2h6g_B437 W102t Protein Farnesyltransferase Mutant Complexed 2e-33
2h6h_B437 Y365f Protein Farnesyltransferase Mutant Complexed 3e-33
1jcq_B437 Crystal Structure Of Human Protein Farnesyltransfer 7e-33
3euv_B427 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 8e-33
1ft2_B401 Co-Crystal Structure Of Protein Farnesyltransferase 3e-32
1nl4_B401 Crystal Structure Of Rat Farnesyl Transferase In Co 3e-32
1n95_B402 Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranf 3e-32
1n94_B397 Aryl Tetrahydropyridine Inhbitors Of Farnesyltransf 3e-32
3pz4_B426 Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subu 3e-32
1o1r_B427 Structure Of Fpt Bound To Ggpp Length = 427 3e-32
2zir_B440 Crystal Structure Of Rat Protein Farnesyltransferas 4e-32
1ft1_B437 Crystal Structure Of Protein Farnesyltransferase At 4e-32
3dra_B390 Candida Albicans Protein Geranylgeranyltransferase- 7e-15
3q73_B520 Cryptococcus Neoformans Protein Farnesyltransferase 4e-14
>pdb|3PZ1|B Chain B, Crystal Structure Of Rabggtase(Delta Lrr; Delta Ig) In Complex With Bms3 Length = 330 Back     alignment and structure 
Iteration: 1

 Score =  404 bits (1039), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 178/306 (58%), Positives = 236/306 (77%)
Query: 4   LAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILK 63
           L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I  
Sbjct: 17  LLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKS 76
Query: 64  CQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDI 123
           CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GDI
Sbjct: 77  CQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDI 136
Query: 124 WGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFCC 183
           WGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+CC
Sbjct: 137 WGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYCC 196
Query: 184 VGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVHW 243
            G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+HW
Sbjct: 197 TGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLHW 256
Query: 244 INKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPV 303
           I+++KL  FIL CQD E GG +DRP D VD FHT FG+AGLSLL    +KP+ P + +P 
Sbjct: 257 IDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPE 316
Query: 304 DVVNRI 309
           +V+ R+
Sbjct: 317 EVLQRV 322
>pdb|1DCE|B Chain B, Crystal Structure Of Rab Geranylgeranyltransferase From Rat Brain Length = 331 Back     alignment and structure
>pdb|1N4P|B Chain B, Protein Geranylgeranyltransferase Type-I Complexed With Geranylgeranyl Diphosphate Length = 377 Back     alignment and structure
>pdb|2H6I|B Chain B, W102tY365F PROTEIN FARNESYLTRANSFERASE DOUBLE MUTANT COMPLEXED WITH A Geranylgeranylated Ddptasacvls Peptide Product At 3.0a Length = 437 Back     alignment and structure
>pdb|2H6G|B Chain B, W102t Protein Farnesyltransferase Mutant Complexed With A Geranylgeranylated Ddptasacvls Peptide Product At 1.85a Resolution Length = 437 Back     alignment and structure
>pdb|2H6H|B Chain B, Y365f Protein Farnesyltransferase Mutant Complexed With A Farnesylated Ddptasacvls Peptide Product At 1.8a Length = 437 Back     alignment and structure
>pdb|1JCQ|B Chain B, Crystal Structure Of Human Protein Farnesyltransferase Complexed With Farnesyl Diphosphate And The Peptidomimetic Inhibitor L-739,750 Length = 437 Back     alignment and structure
>pdb|3EUV|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10, W102t, Y154t) In Complex With Biotingpp Length = 427 Back     alignment and structure
>pdb|1FT2|B Chain B, Co-Crystal Structure Of Protein Farnesyltransferase Complexed With A Farnesyl Diphosphate Substrate Length = 401 Back     alignment and structure
>pdb|1NL4|B Chain B, Crystal Structure Of Rat Farnesyl Transferase In Complex With A Potent Biphenyl Inhibitor Length = 401 Back     alignment and structure
>pdb|1N95|B Chain B, Aryl Tetrahydrophyridine Inhbitors Of Farnesyltranferase: Glycine, Phenylalanine And Histidine Derivatives Length = 402 Back     alignment and structure
>pdb|1N94|B Chain B, Aryl Tetrahydropyridine Inhbitors Of Farnesyltransferase: Glycine, Phenylalanine And Histidine Derivates Length = 397 Back     alignment and structure
>pdb|3PZ4|B Chain B, Crystal Structure Of Ftase(Alpha-Subunit; Beta-Subunit Delta C10) In Complex With Bms3 And Lipid Substrate Fpp Length = 426 Back     alignment and structure
>pdb|1O1R|B Chain B, Structure Of Fpt Bound To Ggpp Length = 427 Back     alignment and structure
>pdb|2ZIR|B Chain B, Crystal Structure Of Rat Protein Farnesyltransferase Complexed With A Benzofuran Inhibitor And Fpp Length = 440 Back     alignment and structure
>pdb|1FT1|B Chain B, Crystal Structure Of Protein Farnesyltransferase At 2.25 Angstroms Resolution Length = 437 Back     alignment and structure
>pdb|3DRA|B Chain B, Candida Albicans Protein Geranylgeranyltransferase-I Complexed With Ggpp Length = 390 Back     alignment and structure
>pdb|3Q73|B Chain B, Cryptococcus Neoformans Protein Farnesyltransferase, Apo Enzyme Length = 520 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 1e-132
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 2e-30
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 1e-122
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 1e-116
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 1e-107
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 1e-107
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 8e-10
2sqc_A 631 Squalene-hopene cyclase; isomerase, triterpene cyc 5e-05
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 7e-05
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
 Score =  379 bits (973), Expect = e-132
 Identities = 178/307 (57%), Positives = 236/307 (76%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 17  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 76

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 77  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 136

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 137 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 196

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+H
Sbjct: 197 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLH 256

Query: 243 WINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALP 302
           WI+++KL  FIL CQD E GG +DRP D VD FHT FG+AGLSLL    +KP+ P + +P
Sbjct: 257 WIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMP 316

Query: 303 VDVVNRI 309
            +V+ R+
Sbjct: 317 EEVLQRV 323
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* Length = 331 Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Length = 437 Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Length = 377 Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Length = 390 Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3CX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Length = 520 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Length = 631 Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Length = 732 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dss_B331 Geranylgeranyl transferase type-2 subunit beta; pr 100.0
2h6f_B437 Protein farnesyltransferase beta subunit; ftase, f 100.0
1n4q_B377 Geranyltransferase type-I beta subunit; protein ge 100.0
3q7a_B520 Farnesyltransferase beta subunit; protein prenyltr 100.0
3dra_B390 Geranylgeranyltransferase type I beta subunit; ger 100.0
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.94
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.93
2sqc_A631 Squalene-hopene cyclase; isomerase, triterpene cyc 99.92
1w6k_A732 Lanosterol synthase; cyclase, cholesterol, monotop 99.92
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.73
2wy7_A310 Complement C3D fragment; immune system, immune res 99.71
1qqf_A277 Protein (complement C3DG); alpha-alpha barrel, imm 99.65
2wy7_A310 Complement C3D fragment; immune system, immune res 99.63
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.55
1hzf_A367 Complement factor C4A; alpha-alpha 6 barrel, immun 99.53
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.37
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.35
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.27
2hr0_B 915 Complement C3 alpha' chain; complement component C 99.24
4acq_A 1451 Alpha-2-macroglobulin; hydrolase inhibitor, protei 99.19
2pn5_A 1325 TEP1R, thioester-containing protein I; FULL-length 99.09
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 99.02
4fxk_B 767 Complement C4-A alpha chain; immune system, proteo 98.95
4fxk_B767 Complement C4-A alpha chain; immune system, proteo 98.92
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.91
2b39_A 1661 C3; thioester, immune defense, immune system; HET: 98.85
1r76_A408 Pectate lyase; A-helical structure; 2.65A {Azospir 98.84
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.73
3cu7_A 1676 Complement C5; Mg domain, inflammation, anaphylato 98.67
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.63
1gxm_A332 Pectate lyase; mechanism, elimination; 1.32A {Cell 98.55
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.46
2bb6_A414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 98.41
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 98.39
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 98.37
3prx_B 1642 Cobra venom factor; immune system, complement, imm 98.34
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 98.27
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 98.03
2bb6_A 414 TCII, TC II, transcobalamin II; alpha_6 - alpha_6 97.95
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.83
2pmv_A399 Gastric intrinsic factor; cobalamin transport prot 97.74
3p5p_A 764 Taxadiene synthase; class I and II terpene cyclase 96.59
3s9v_A 785 Abietadiene synthase, chloroplastic; alpha bundle/ 96.39
3pya_A 727 ENT-copalyl diphosphate synthase, chloroplastic; c 95.92
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 94.59
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
Probab=100.00  E-value=1.8e-77  Score=547.93  Aligned_cols=312  Identities=57%  Similarity=1.135  Sum_probs=298.8

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021305            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (314)
Q Consensus         2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~   81 (314)
                      .+|+++||++||+++.....++.++..|+++++.+||+|.+|++||..+.++++++++||++||++||||++.+++++|+
T Consensus        16 ~~l~~~~h~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~~L~lLg~l~~~~r~~~i~~l~s~Q~~dGGF~g~~g~~~~l   95 (331)
T 3dss_B           16 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL   95 (331)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred             hhhhHHHHHHHHHHhccCCCCccceeccccHHHHHHHHHHHHHHhCCCchhhHHHHHHHHhhhcCCCCCcCCCCCCCccH
Confidence            46899999999999876667788889999999999999999999998777789999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021305           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (314)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q  161 (314)
                      .+||+|+++|.+++.++.++++++++||.++|++||||.+.++++.|+++||||+.+|.++|..+.++++++++||++||
T Consensus        96 ~~Ty~Al~~L~~l~~~~~id~~k~~~fL~~~Q~~DGsf~~~~~ge~d~~~ty~Al~~L~llg~~~~~~~~k~v~~L~s~Q  175 (331)
T 3dss_B           96 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM  175 (331)
T ss_dssp             HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHcCCccHHHHHHHHHHHhccCCCCCCEecccCCCCchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999888899999999999999999999999899999999999999999999877789999999999999


Q ss_pred             CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021305          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV  241 (314)
Q Consensus       162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~  241 (314)
                      ++||||+..|+.++|+++||||+++|.+++..+.++++++++||.++|.++|||+++|+|.+|+|||||++++|.++++.
T Consensus       176 ~~dGGfg~~pg~esh~~~T~~al~aL~llg~~~~~~~~~~~~wL~~~Q~~dGGf~gr~~k~~D~cys~w~l~~L~llg~~  255 (331)
T 3dss_B          176 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL  255 (331)
T ss_dssp             CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG
T ss_pred             cCCCCcCCCCCCCCcHHHHHHHHHHHHhccccchhhHHHHHHHHHHhCCCCCCcCCCCCCCCcchhHHHHHHHHHHcCCc
Confidence            99999999999999999999999999999998888999999999999999999999999999999999999999999998


Q ss_pred             cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhccccC
Q 021305          242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFSK  313 (314)
Q Consensus       242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~  313 (314)
                      .++|.+++++||++||+.+.|||+++|++.||++||||+|++|+++++++|+++||+|+||+++++++.+..
T Consensus       256 ~~~~~~~~~~fil~cQ~~~~GGf~~~pg~~~d~~hT~~~l~~Ls~~g~~~l~~~~p~~~~~~~~~~~~~~~~  327 (331)
T 3dss_B          256 HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQP  327 (331)
T ss_dssp             GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCTTTSSBHHHHHHHTCCC
T ss_pred             chhhHHHHHHHHHHhcCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCCccccCCHHHHHHhCCCh
Confidence            899999999999999994349999999999999999999999999999999999999999999999998865
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dss_B Geranylgeranyl transferase type-2 subunit beta; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1ltx_B* 3c72_B* 1dce_B 3dst_B* 3dsu_B* 3dsv_B* 3dsw_B* 3dsx_B* 3hxb_B* 3hxc_B* 3hxd_B* 3hxe_B* 3hxf_B* 3pz1_B* 3pz2_B* 3pz3_B* 4ehm_B* 4gts_B* 4gtt_B* 4gtv_B* Back     alignment and structure
>2h6f_B Protein farnesyltransferase beta subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.102.4.3 PDB: 1jcq_B* 1ld7_B* 1mzc_B* 1s63_B* 1sa4_B* 1tn6_B* 2f0y_B* 1ld8_B* 2iej_B* 3e37_B* 2h6h_B* 2h6g_B* 2h6i_B* 1o1t_B* 1o1s_B* 1o1r_B* 3eu5_B* 3pz4_B* 3e33_B* 1d8e_B* ... Back     alignment and structure
>1n4q_B Geranyltransferase type-I beta subunit; protein geranylgeranyltransferase type-I, ggtase; HET: MGM GER; 2.40A {Rattus norvegicus} SCOP: a.102.4.3 PDB: 1n4p_B* 1n4r_B* 1n4s_B* 1s64_B* 1tnb_B* 1tno_B* 1tnu_B* 1tny_B* 1tnz_B* Back     alignment and structure
>3q7a_B Farnesyltransferase beta subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_B* 3q78_B* 3q79_B* 3q75_B* 3q7f_B* 3sfx_B* 3sfy_B* Back     alignment and structure
>3dra_B Geranylgeranyltransferase type I beta subunit; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>2sqc_A Squalene-hopene cyclase; isomerase, triterpene cyclase, monotopic membrane protein, QW-sequence, repeat; HET: C8E; 2.00A {Alicyclobacillus acidocaldarius} SCOP: a.102.4.2 a.102.4.2 PDB: 3sqc_A 1ump_A* 1h35_A* 1h36_A* 1h37_A* 1h39_A* 1h3a_A* 1h3b_A* 1h3c_A* 1o6h_A* 1o6q_A* 1gsz_A* 1o79_A* 1sqc_A* 1o6r_A* Back     alignment and structure
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane protein, B-octyl-glucoside, isomerase, steroid biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP: a.102.4.2 a.102.4.2 PDB: 1w6j_A* Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1qqf_A Protein (complement C3DG); alpha-alpha barrel, immune system; 1.45A {Rattus norvegicus} SCOP: a.102.4.4 PDB: 1qsj_A 3d5r_A 2noj_A 2gox_A 3d5s_A 1c3d_A 2xqw_A Back     alignment and structure
>2wy7_A Complement C3D fragment; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Homo sapiens} PDB: 2wy8_A 3oed_A 3oxu_A 3rj3_A 1ghq_A* 1w2s_A Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>1hzf_A Complement factor C4A; alpha-alpha 6 barrel, immune system; 2.30A {Homo sapiens} SCOP: a.102.4.4 Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2hr0_B Complement C3 alpha' chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2icf_B* 2wii_B* 2win_B* 3g6j_B 3l5n_B* 2a73_B* 2i07_B* 2xwj_B* 2xwb_B* 2a74_C* 2ice_C* 2qki_C* 3l3o_F* 3nms_C* 3nsa_C* 3ohx_C* 3t4a_C 2ice_B* 3l3o_B* 3nms_B* ... Back     alignment and structure
>4acq_A Alpha-2-macroglobulin; hydrolase inhibitor, proteinase inhibitor, irreversible PROT inhibitor, conformational change, blood plasma inhibitor; HET: MEQ NAG MAN; 4.30A {Homo sapiens} Back     alignment and structure
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae} Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>4fxk_B Complement C4-A alpha chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_B* Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus} Back     alignment and structure
>1r76_A Pectate lyase; A-helical structure; 2.65A {Azospirillum irakense} SCOP: a.102.5.1 Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>1gxm_A Pectate lyase; mechanism, elimination; 1.32A {Cellvibrio cellulosa} SCOP: a.102.5.1 PDB: 1gxn_A 1gxo_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3prx_B Cobra venom factor; immune system, complement, immune SYS complex; HET: NAG; 4.30A {Naja kaouthia} PDB: 3pvm_B* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d3dssb1325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 1e-138
d3dssb1 325 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, 8e-20
d1n4qb_346 a.102.4.3 (B:) Protein farnesyltransferase, beta-s 1e-119
d2h6fb1401 a.102.4.3 (B:521-921) Protein farnesyltransferase, 1e-117
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 2e-07
d1w6ka1448 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase { 0.002
d2sqca1352 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cycla 1e-05
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  393 bits (1010), Expect = e-138
 Identities = 178/307 (57%), Positives = 236/307 (76%)

Query: 3   ELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWIL 62
            L  +KH  YI S   KKD +E  + E+LR++G YWGLT +D++G+L  +++E+++ +I 
Sbjct: 11  TLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIK 70

Query: 63  KCQDESGGFAGNIGHDPHVLYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGD 122
            CQ E GG + +IGHDPH+LYTLSAVQ+L L+D + +++ DKV  Y+  LQ EDGSF+GD
Sbjct: 71  SCQHECGGVSASIGHDPHLLYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGD 130

Query: 123 IWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCKNLDGGFGCTPGGESHSGQIFC 182
           IWGE+DTRFS+ A+  L++L +LD INV+KA+E+++SC N DGGFGC PG ESH+GQI+C
Sbjct: 131 IWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCMNFDGGFGCRPGSESHAGQIYC 190

Query: 183 CVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRVH 242
           C G LAI   LH V+ DLLGWWLCERQ+ SGGLNGRPEKLPDVCYSWWVL+SL +I R+H
Sbjct: 191 CTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRLH 250

Query: 243 WINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALP 302
           WI+++KL  FIL CQD E GG +DRP D VD FHT FG+AGLSLL    +KP+ P + +P
Sbjct: 251 WIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMP 310

Query: 303 VDVVNRI 309
            +V+ R+
Sbjct: 311 EEVLQRV 317
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 325 Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 346 Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 448 Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Length = 352 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d3dssb1325 Rab geranylgeranyltransferase, beta subunit {Rat ( 100.0
d2h6fb1401 Protein farnesyltransferase, beta-subunit {Human ( 100.0
d1n4qb_346 Protein farnesyltransferase, beta-subunit {Rat (Ra 100.0
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.96
d2sqca1352 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.91
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.91
d1w6ka1448 Lanosterol synthase {Human (Homo sapiens) [TaxId: 99.9
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.6
d2sqca2271 Squalene-hopene cyclase {Alicyclobacillus acidocal 99.5
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 99.06
d1hzfa_326 C4adg fragment of complement factor C4a {Human (Ho 98.91
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.69
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.61
d1r76a_408 Polygalacturonic acid lyase (pectate lyase) {Azosp 98.6
d1c3da_294 C3D, a C3 fragment and ligand for complement recep 98.51
d1w6ka2 279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.41
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.4
d1gxma_324 Polygalacturonic acid lyase (pectate lyase) {Cellv 98.28
d1w6ka2279 Lanosterol synthase {Human (Homo sapiens) [TaxId: 98.23
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: Terpenoid cyclases/Protein prenyltransferases
family: Protein prenyltransferases
domain: Rab geranylgeranyltransferase, beta subunit
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2e-77  Score=545.02  Aligned_cols=311  Identities=57%  Similarity=1.139  Sum_probs=298.7

Q ss_pred             ccccHHHHHHHHHHcccCCCCccccccccchhHHHHHHHHHHHhcCCCCccCHHHHHHHHHhccCCCCcccCCCCCCCch
Q 021305            2 GELAADKHVKYIISVEKKKDSFESVVMEHLRLNGAYWGLTTLDILGKLDAVDEEDVISWILKCQDESGGFAGNIGHDPHV   81 (314)
Q Consensus         2 ~~l~~~~~~~yl~~~~~~~g~~~~~~~~~~~~~~~~~al~~L~lLg~~~~~~~~~~~~~l~~~q~~dGGf~~~~~~~~~~   81 (314)
                      ++|+++||++||+++.....++.+...|+++++.+||+|.+|++||+.+..+++++++||.+||++||||++.+++.+|+
T Consensus        10 ~~l~~~~H~~y~~~~~~~~~~~~~~~~d~~r~~~~yw~l~sL~lLg~l~~~~~~~~i~~L~s~Q~~dGGf~g~~~~~~~l   89 (325)
T d3dssb1          10 DTLLLEKHADYIASYGSKKDDYEYCMSEYLRMSGVYWGLTVMDLMGQLHRMNKEEILVFIKSCQHECGGVSASIGHDPHL   89 (325)
T ss_dssp             CSCCHHHHHHHHHHTTSSSCGGGSGGGGGGHHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTSCBCH
T ss_pred             hHHHHHHHHHHHHHhcccCCCccceehhhhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCCCCCcCCCCCCcccH
Confidence            47899999999999887667888888999999999999999999998877889999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhcCCCcccHHHHHHHHHhccCCCCCcccCCCCCcccchHHHHHHHHHHhCCCCccCHHHHHHHHHhcc
Q 021305           82 LYTLSAVQVLALFDKVDILDADKVSNYIVGLQNEDGSFSGDIWGEVDTRFSYIAICCLSILQRLDKINVDKAVEYIVSCK  161 (314)
Q Consensus        82 ~~T~~al~~L~~l~~~~~~~~~~~~~~l~~~Q~~dGgf~~~~~~~~d~~~ty~al~~l~ll~~~~~~~~~~~~~~l~~~q  161 (314)
                      ..||+|+.+|.+++..+.++++++++||.++|++||+|...++++.|+++||+|+.++.+++..+.++++++++||++||
T Consensus        90 ~~T~~al~~L~l~~~~~~~dr~~i~~~L~s~Q~~DGsf~~~~~~e~D~r~ty~Al~~l~ll~~~~~~~~~~~~~~i~scQ  169 (325)
T d3dssb1          90 LYTLSAVQILTLYDSIHVINVDKVVAYVQSLQKEDGSFAGDIWGEIDTRFSFCAVATLALLGKLDAINVEKAIEFVLSCM  169 (325)
T ss_dssp             HHHHHHHHHHHHTTCGGGSCHHHHHHHHHHTBCTTSCBBSSTTCCBCHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHhhccccccCHHHHHHHHHHhhCcCCCCccCCCCCccHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHhc
Confidence            99999999999999888899999999999999999999998999999999999999999999878889999999999999


Q ss_pred             CCCCCCCCCCCCccchhhhHHHHHHHHHhhcCCcCCHHHHHHHHHccCcCCCcccCCCCCCCCchhHHHHHHHHHhhccC
Q 021305          162 NLDGGFGCTPGGESHSGQIFCCVGALAIAGALHHVDKDLLGWWLCERQVKSGGLNGRPEKLPDVCYSWWVLSSLIMIDRV  241 (314)
Q Consensus       162 ~~dGGf~~~p~~~s~~~~T~~al~~L~ll~~~~~~~~~~~~~~L~~~Q~~~GGf~~~~~~~~d~~yt~~~~~~L~~l~~~  241 (314)
                      ++||||+..|+.|+|+++||||+++|.+++..+..+.+++++||.+||.++|||+|||||.+|+|||||++++|.+|+..
T Consensus       170 n~DGGfg~~p~~Esh~g~T~cavasL~ll~~l~~~~~~~l~~wL~~rQ~~~GGf~GR~~K~~D~cys~W~~~~l~~L~~~  249 (325)
T d3dssb1         170 NFDGGFGCRPGSESHAGQIYCCTGFLAITSQLHQVNSDLLGWWLCERQLPSGGLNGRPEKLPDVCYSWWVLASLKIIGRL  249 (325)
T ss_dssp             CTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCGGGSCHHHHHHHHHTTBCTTSCBCSSTTCCCCHHHHHHHHHHHHHTTCG
T ss_pred             CCcCCccccCCCCCCcchhHHHHHHHHHhcccccccHHHHHHHHHHhCCCCCCcCCCCCCCCchHHHHHHHHHHHHcCcc
Confidence            99999999999999999999999999999988888999999999999999999999999999999999999999999998


Q ss_pred             cccChHHHHHHHHhhcCCCCCCcCCCCCCCCCHHHHHHHhhhhhccCCCCCCCCCCcccCCHHHHHhcccc
Q 021305          242 HWINKDKLVKFILDCQDMENGGISDRPDDAVDVFHTYFGVAGLSLLEYPGLKPIDPAYALPVDVVNRIFFS  312 (314)
Q Consensus       242 ~~~~~~~~~~~l~~~Q~~~~GGf~~~p~~~~d~~~T~~al~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~  312 (314)
                      .++|.+++++||+.||+.+.|||+++|++.||+|||||+|++|++++++.|.++||+++||++++++++..
T Consensus       250 ~~~d~~~l~~yil~~~q~~~GGf~~~p~~~pD~~HT~y~l~gLsl~~~~~l~~~~p~~~i~~~~~~~~~~~  320 (325)
T d3dssb1         250 HWIDREKLRSFILACQDEETGGFADRPGDMVDPFHTLFGIAGLSLLGEEQIKPVSPVFCMPEEVLQRVNVQ  320 (325)
T ss_dssp             GGSCHHHHHHHHHHTBCTTTCCBCSSTTSCCBHHHHHHHHHHHHHTTCTTSCCBCTTTSSBHHHHHHHTCC
T ss_pred             ccccHHHHHHHHHHHcCCCCCCcCCCCCCCCChHHHHHHHHHHHHCCCCCCCCCCCcccCCHHHHHHhccc
Confidence            89999999999999987578999999999999999999999999999999999999999999999999874
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3dssb1 a.102.4.3 (B:7-331) Rab geranylgeranyltransferase, beta subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2h6fb1 a.102.4.3 (B:521-921) Protein farnesyltransferase, beta-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1n4qb_ a.102.4.3 (B:) Protein farnesyltransferase, beta-subunit {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca1 a.102.4.2 (A:8-36,A:308-630) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka1 a.102.4.2 (A:6-99,A:379-732) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d2sqca2 a.102.4.2 (A:37-307) Squalene-hopene cyclase {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hzfa_ a.102.4.4 (A:) C4adg fragment of complement factor C4a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1r76a_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Azospirillum irakense [TaxId: 34011]} Back     information, alignment and structure
>d1c3da_ a.102.4.4 (A:) C3D, a C3 fragment and ligand for complement receptor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1gxma_ a.102.5.1 (A:) Polygalacturonic acid lyase (pectate lyase) {Cellvibrio cellulosa [TaxId: 155077]} Back     information, alignment and structure
>d1w6ka2 a.102.4.2 (A:100-378) Lanosterol synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure