Citrus Sinensis ID: 021307

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
MALLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK
cccHHHHHHHHHHHHHHHHccccccccccccccccHHHccccccccccccccEEEEccccEEEcccccEEEEEEccccccccEEEcEEEEEEEEEEEEEccccccccEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEcccccccccEEEEcccccccccEEEEEEEcccEEEEEEccEEEEEEEcccccccccccccEEEEEEEEccccccccccEEEEccccccEEEEEcEEEEEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHccccEEEEcccccccccccccccc
ccHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHccccccccccccccccEEEccccEEEEccccEEEEEEEccccccccccccEEEEEEEEEEEEcccccccEEEEEEEcccccccccccEEEEEEccccccccEEEEEEEEEcccccccccEEEEEEEcccccccEEEEEEcccEEEEEEccccEEEEEccHHccccccccccEEEEEEEcccccccccccEEcccccccEEEEEEcEEEccEEccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHcEEEEcccccccccccccccc
MALLLLNNLILAFLLFFCImapkvsshnrayaapsVARLTDLFghvsvdqgfstffggsnvkrinngsmATLALdkssgsglvsrnkyyhGFFSAAiklpsglsSGVVLAFYLsnadsyphnhdeidiellghdkrndwVLQTNIYanggvstgreekfyfwfdptaqhhyYSIIWNSHHIVflvdnvplrefpntgafssvypskpmsVYVTIWdgsqwathggkypvnykyapfVASLAEMEMAGCvlsnsasapascskgsassldpvdgqqfttLSKQQVAALDWSRRKLMFYSYCKdttrfkvmppeck
MALLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTgafssvypskPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCkdttrfkvmppeck
MallllnnlilafllffCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK
**LLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALD***GSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVL****************************LSKQQVAALDWSRRKLMFYSYCKDTTRFK*******
*AL****NLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC*
MALLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLS******************PVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK
MALLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSN******************VDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPP*C*
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALLLLNNLILAFLLFFCIMAPKVSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPECK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query314 2.2.26 [Sep-21-2011]
Q8LC45310 Probable xyloglucan endot yes no 0.945 0.958 0.643 1e-119
Q8LDS2333 Probable xyloglucan endot no no 0.834 0.786 0.473 8e-73
Q38909332 Probable xyloglucan endot no no 0.834 0.789 0.466 5e-71
Q38908343 Probable xyloglucan endot no no 0.840 0.769 0.447 2e-69
Q8L7H3357 Probable xyloglucan endot no no 0.831 0.731 0.420 9e-64
P93046293 Probable xyloglucan endot no no 0.799 0.856 0.399 6e-53
Q9SV61292 Putative xyloglucan endot no no 0.898 0.965 0.379 6e-53
Q9SJL9299 Probable xyloglucan endot no no 0.933 0.979 0.381 8e-53
Q39099296 Xyloglucan endotransgluco no no 0.770 0.817 0.421 4e-52
Q6YDN9295 Xyloglucan endotransgluco N/A no 0.770 0.820 0.409 2e-51
>sp|Q8LC45|XTH33_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 33 OS=Arabidopsis thaliana GN=XTH33 PE=2 SV=2 Back     alignment and function desciption
 Score =  429 bits (1103), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 195/303 (64%), Positives = 245/303 (80%), Gaps = 6/303 (1%)

Query: 15  LFFCIMAPK-VSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLA 73
           + FC+ +   VSSH+R +  P+V RLTD F  ++++ GFS  FG  N++   NGS+A L 
Sbjct: 9   VVFCLCSLSLVSSHSRKFTTPNVTRLTDQFSKIAIENGFSRRFGAHNIQV--NGSLAKLT 66

Query: 74  LDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGH 133
           LDKSSG+GLVS+NKY++GFFSA +KLP+G +SGVV+AFYLSNA++YP +HDEIDIELLG 
Sbjct: 67  LDKSSGAGLVSKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGR 126

Query: 134 DKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREF 193
            +R+DW +QTN+YANG   TGREEKFYFWFDPT   H Y++IWNSHH VFLVDN+P+R+F
Sbjct: 127 SRRDDWTIQTNVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQF 186

Query: 194 PNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSN- 252
           PN GAF+S YPSKPMS+YVT+WDGS+WAT GGKYPVNYKYAPFV S+A++E++GC ++N 
Sbjct: 187 PNRGAFTSAYPSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNG 246

Query: 253 --SASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMP 310
             + S P + S GS SSLDPVDGQ F TLSK Q+ A+DW+RRKLMFYSYC D  R+KVMP
Sbjct: 247 SSTGSGPCTKSGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMP 306

Query: 311 PEC 313
            EC
Sbjct: 307 AEC 309
Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 2EC: 0EC: 7
>sp|Q8LDS2|XTH27_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 27 OS=Arabidopsis thaliana GN=XTH27 PE=2 SV=2 Back     alignment and function description
>sp|Q38909|XTH28_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 28 OS=Arabidopsis thaliana GN=XTH28 PE=2 SV=1 Back     alignment and function description
>sp|Q38908|XTH30_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 30 OS=Arabidopsis thaliana GN=XTH30 PE=2 SV=2 Back     alignment and function description
>sp|Q8L7H3|XTH29_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 29 OS=Arabidopsis thaliana GN=XTH29 PE=2 SV=1 Back     alignment and function description
>sp|P93046|XTH31_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 31 OS=Arabidopsis thaliana GN=XTH31 PE=2 SV=2 Back     alignment and function description
>sp|Q9SV61|XTH1_ARATH Putative xyloglucan endotransglucosylase/hydrolase protein 1 OS=Arabidopsis thaliana GN=XTH1 PE=3 SV=2 Back     alignment and function description
>sp|Q9SJL9|XTH32_ARATH Probable xyloglucan endotransglucosylase/hydrolase protein 32 OS=Arabidopsis thaliana GN=XTH32 PE=2 SV=1 Back     alignment and function description
>sp|Q39099|XTH4_ARATH Xyloglucan endotransglucosylase/hydrolase protein 4 OS=Arabidopsis thaliana GN=XTH4 PE=1 SV=1 Back     alignment and function description
>sp|Q6YDN9|XTH_BRAOB Xyloglucan endotransglucosylase/hydrolase OS=Brassica oleracea var. botrytis GN=XET16A PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
124109177312 xyloglucan endotransglycosylase/hydrolas 0.987 0.993 0.729 1e-130
224128199312 predicted protein [Populus trichocarpa] 0.987 0.993 0.719 1e-129
225424689313 PREDICTED: probable xyloglucan endotrans 0.990 0.993 0.685 1e-126
388504170311 unknown [Medicago truncatula] 0.980 0.990 0.683 1e-126
403495100291 xyloglucan endotransglucosylase/hydrolas 0.907 0.979 0.731 1e-125
356567624310 PREDICTED: probable xyloglucan endotrans 0.977 0.990 0.696 1e-123
388498040309 unknown [Lotus japonicus] 0.942 0.957 0.691 1e-121
297849392310 hypothetical protein ARALYDRAFT_471170 [ 0.945 0.958 0.650 1e-118
15218558310 xyloglucan:xyloglucosyl transferase [Ara 0.945 0.958 0.643 1e-118
21555405307 putative endoxyloglucan transferase [Ara 0.945 0.967 0.636 1e-117
>gi|124109177|gb|ABM91064.1| xyloglucan endotransglycosylase/hydrolase precursor XTH-38 [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
 Score =  469 bits (1208), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 229/314 (72%), Positives = 258/314 (82%), Gaps = 4/314 (1%)

Query: 3   LLLLNNLILAFLLFFCIMAPKVSSHNR--AYAAPSVARLTDLFGHVSVDQGFSTFFGGSN 60
           +  L  ++   LL  C+ A  VSSH+R   Y  P+V RLTD F HVS+ Q +STFFGGSN
Sbjct: 1   MAFLQEIVALGLLVLCMTA-AVSSHSRHSRYTPPNVVRLTDAFSHVSIGQEYSTFFGGSN 59

Query: 61  VKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYP 120
            K +NNGS A LALDKSSGSGLVSRNKYY+GFFSAAIKLPSGLS GVV+AFYLSNAD+YP
Sbjct: 60  TKLLNNGSSANLALDKSSGSGLVSRNKYYYGFFSAAIKLPSGLSPGVVVAFYLSNADNYP 119

Query: 121 HNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHH 180
           HNHDEIDIELLGHD RNDW LQTN+YANG   TGREEKFY WFDPT QHH+YSIIWNSHH
Sbjct: 120 HNHDEIDIELLGHDMRNDWALQTNVYANGSTGTGREEKFYLWFDPTEQHHHYSIIWNSHH 179

Query: 181 IVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASL 240
           IVFLVDNVP+REF ++ ++ SVYPSKPMS+Y TIWDGSQWATHGGKYPVNYKYAPFV S 
Sbjct: 180 IVFLVDNVPVREFAHSSSYPSVYPSKPMSLYATIWDGSQWATHGGKYPVNYKYAPFVVSF 239

Query: 241 AEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYC 300
           AEMEM GC+ + +A    SCSK + SSLDPVDG +F  LSK+Q AA+DW+RRKLMFYSYC
Sbjct: 240 AEMEMTGCIFNQTAIV-TSCSKANPSSLDPVDGPEFARLSKEQSAAMDWARRKLMFYSYC 298

Query: 301 KDTTRFKVMPPECK 314
            D +RFK MPPECK
Sbjct: 299 NDRSRFKGMPPECK 312

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224128199|ref|XP_002320268.1| predicted protein [Populus trichocarpa] gi|222861041|gb|EEE98583.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225424689|ref|XP_002263411.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33 [Vitis vinifera] gi|296086546|emb|CBI32135.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|388504170|gb|AFK40151.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|403495100|gb|AFR46574.1| xyloglucan endotransglucosylase/hydrolase 5 [Rosa x borboniana] Back     alignment and taxonomy information
>gi|356567624|ref|XP_003552017.1| PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 33-like [Glycine max] Back     alignment and taxonomy information
>gi|388498040|gb|AFK37086.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|297849392|ref|XP_002892577.1| hypothetical protein ARALYDRAFT_471170 [Arabidopsis lyrata subsp. lyrata] gi|297338419|gb|EFH68836.1| hypothetical protein ARALYDRAFT_471170 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15218558|ref|NP_172525.1| xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] gi|38605339|sp|Q8LC45.2|XTH33_ARATH RecName: Full=Probable xyloglucan endotransglucosylase/hydrolase protein 33; Short=At-XTH33; Short=XTH-33; Flags: Precursor gi|5091548|gb|AAD39577.1|AC007067_17 T10O24.17 [Arabidopsis thaliana] gi|332190472|gb|AEE28593.1| xyloglucan:xyloglucosyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|21555405|gb|AAM63851.1| putative endoxyloglucan transferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query314
TAIR|locus:2194554310 XTH33 "xyloglucan:xyloglucosyl 0.917 0.929 0.658 8.7e-111
TAIR|locus:2059728333 EXGT-A3 "endoxyloglucan transf 0.831 0.783 0.479 2.7e-68
TAIR|locus:2006857332 XTH28 "xyloglucan endotransglu 0.834 0.789 0.466 2.2e-66
TAIR|locus:2031750343 XTH30 "xyloglucan endotransglu 0.872 0.798 0.440 3.2e-65
TAIR|locus:2117189357 XTH29 "xyloglucan endotransglu 0.843 0.742 0.430 9e-61
TAIR|locus:2075919293 XTH31 "XYLOGLUCAN ENDOTRANSGLU 0.799 0.856 0.410 2.7e-52
TAIR|locus:2058006299 XTH32 "xyloglucan endotransglu 0.872 0.916 0.399 1.3e-50
TAIR|locus:2123281292 XTH1 "xyloglucan endotransgluc 0.815 0.876 0.416 3.6e-50
TAIR|locus:2065821296 XTH4 "xyloglucan endotransgluc 0.770 0.817 0.421 2e-49
TAIR|locus:2123201292 XTH2 "xyloglucan endotransgluc 0.834 0.897 0.387 6.7e-49
TAIR|locus:2194554 XTH33 "xyloglucan:xyloglucosyl transferase 33" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
 Identities = 193/293 (65%), Positives = 241/293 (82%)

Query:    24 VSSHNRAYAAPSVARLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLV 83
             VSSH+R +  P+V RLTD F  ++++ GFS  FG  N++   NGS+A L LDKSSG+GLV
Sbjct:    19 VSSHSRKFTTPNVTRLTDQFSKIAIENGFSRRFGAHNIQV--NGSLAKLTLDKSSGAGLV 76

Query:    84 SRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQT 143
             S+NKY++GFFSA +KLP+G +SGVV+AFYLSNA++YP +HDEIDIELLG  +R+DW +QT
Sbjct:    77 SKNKYHYGFFSARLKLPAGFASGVVVAFYLSNAETYPKSHDEIDIELLGRSRRDDWTIQT 136

Query:   144 NIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY 203
             N+YANG   TGREEKFYFWFDPT   H Y++IWNSHH VFLVDN+P+R+FPN GAF+S Y
Sbjct:   137 NVYANGSTRTGREEKFYFWFDPTQAFHDYTLIWNSHHTVFLVDNIPVRQFPNRGAFTSAY 196

Query:   204 PSKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPAS-CSK 262
             PSKPMS+YVT+WDGS+WAT GGKYPVNYKYAPFV S+A++E++GC ++N +S  +  C+K
Sbjct:   197 PSKPMSLYVTVWDGSEWATKGGKYPVNYKYAPFVVSVADVELSGCSVNNGSSTGSGPCTK 256

Query:   263 --GSASSLDPVDGQQFTTLSKQQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
               GS SSLDPVDGQ F TLSK Q+ A+DW+RRKLMFYSYC D  R+KVMP EC
Sbjct:   257 SGGSISSLDPVDGQDFATLSKNQINAMDWARRKLMFYSYCSDKPRYKVMPAEC 309
GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005618 "cell wall" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0006073 "cellular glucan metabolic process" evidence=IEA
GO:0016762 "xyloglucan:xyloglucosyl transferase activity" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=ISS
GO:0048046 "apoplast" evidence=IEA
GO:0005887 "integral to plasma membrane" evidence=IDA
GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=IMP
TAIR|locus:2059728 EXGT-A3 "endoxyloglucan transferase A3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006857 XTH28 "xyloglucan endotransglucosylase/hydrolase 28" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031750 XTH30 "xyloglucan endotransglucosylase/hydrolase 30" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2117189 XTH29 "xyloglucan endotransglucosylase/hydrolase 29" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075919 XTH31 "XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 31" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058006 XTH32 "xyloglucan endotransglucosylase/hydrolase 32" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123281 XTH1 "xyloglucan endotransglucosylase/hydrolase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2065821 XTH4 "xyloglucan endotransglucosylase/hydrolase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2123201 XTH2 "xyloglucan endotransglucosylase/hydrolase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LC45XTH33_ARATH2, ., 4, ., 1, ., 2, 0, 70.64350.94580.9580yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
cd02176263 cd02176, GH16_XET, Xyloglucan endotransglycosylase 1e-130
pfam00722174 pfam00722, Glyco_hydro_16, Glycosyl hydrolases fam 2e-60
PLN03161291 PLN03161, PLN03161, Probable xyloglucan endotransg 5e-58
cd00413210 cd00413, Glyco_hydrolase_16, glycosyl hydrolase fa 3e-21
cd02183203 cd02183, GH16_fungal_CRH1_transglycosylase, glycos 2e-18
cd02175212 cd02175, GH16_lichenase, lichenase, member of glyc 4e-16
pfam0695551 pfam06955, XET_C, Xyloglucan endo-transglycosylase 6e-14
cd08023235 cd08023, GH16_laminarinase_like, Laminarinase, mem 6e-07
COG2273355 COG2273, SKN1, Beta-glucanase/Beta-glucan syntheta 1e-06
cd02178258 cd02178, GH16_beta_agarase, Beta-agarase, member o 3e-05
>gnl|CDD|185685 cd02176, GH16_XET, Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information 
 Score =  371 bits (955), Expect = e-130
 Identities = 128/272 (47%), Positives = 165/272 (60%), Gaps = 10/272 (3%)

Query: 43  FGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSG 102
               S D+ F   +G  +++  N+G+   L LD+SSGSG  S+NKY  GFFS  IKLP G
Sbjct: 1   AVAASFDENFFVTWGPDHIRVSNDGTSVQLTLDQSSGSGFKSKNKYLFGFFSMRIKLPPG 60

Query: 103 LSSGVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFW 162
            S+G V AFYLS+    P NHDEID E LG+     + LQTN++ANG    GRE++ Y W
Sbjct: 61  DSAGTVTAFYLSSQG--PDNHDEIDFEFLGNVTGQPYTLQTNVFANG--VGGREQRIYLW 116

Query: 163 FDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPS-KPMSVYVTIWDGSQWA 221
           FDPTA  H YSI+WN H IVF VD+VP+R F N  A    YPS +PM VY +IWDGS WA
Sbjct: 117 FDPTADFHTYSILWNPHQIVFYVDDVPIRVFKNNEALGVPYPSSQPMGVYASIWDGSDWA 176

Query: 222 THGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSK 281
           T GG+  +++ YAPFVAS  + ++ GCV+    S  +        + D  +G  +  LS 
Sbjct: 177 TQGGRVKIDWSYAPFVASYRDFKLDGCVVDPGDSFSSCS-----CTEDWWNGSTYQQLSA 231

Query: 282 QQVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
            Q  A++W RR  M Y YC D  R+ V PPEC
Sbjct: 232 NQQRAMEWVRRNYMVYDYCDDRKRYPVPPPEC 263

Xyloglucan endotransglycosylases (XETs) cleave and religate xyloglucan polymers in plant cell walls via a transglycosylation mechanism. Xyloglucan is a soluble hemicellulose with a backbone of beta-1,4-linked glucose units, partially substituted with alpha-1,6-linked xylopyranose branches. It binds noncovalently to cellulose, cross-linking the adjacent cellulose microfibrils, giving it a key structural role as a matrix polymer. Therefore, XET plays an important role in all plant processes that require cell wall remodeling. Length = 263
>gnl|CDD|216081 pfam00722, Glyco_hydro_16, Glycosyl hydrolases family 16 Back     alignment and domain information
>gnl|CDD|178706 PLN03161, PLN03161, Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information
>gnl|CDD|185683 cd00413, Glyco_hydrolase_16, glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|185692 cd02183, GH16_fungal_CRH1_transglycosylase, glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>gnl|CDD|185684 cd02175, GH16_lichenase, lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|219239 pfam06955, XET_C, Xyloglucan endo-transglycosylase (XET) C-terminus Back     alignment and domain information
>gnl|CDD|185693 cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>gnl|CDD|225182 COG2273, SKN1, Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|185687 cd02178, GH16_beta_agarase, Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 314
PLN03161291 Probable xyloglucan endotransglucosylase/hydrolase 100.0
cd02176263 GH16_XET Xyloglucan endotransglycosylase, member o 100.0
cd02183203 GH16_fungal_CRH1_transglycosylase glycosylphosphat 100.0
cd02175212 GH16_lichenase lichenase, member of glycosyl hydro 100.0
PF00722185 Glyco_hydro_16: Glycosyl hydrolases family 16; Int 100.0
cd00413210 Glyco_hydrolase_16 glycosyl hydrolase family 16. T 100.0
cd08023235 GH16_laminarinase_like Laminarinase, member of the 100.0
cd02178258 GH16_beta_agarase Beta-agarase, member of glycosyl 100.0
cd02177269 GH16_kappa_carrageenase Kappa-carrageenase, member 99.97
cd02180295 GH16_fungal_KRE6_glucanase Saccharomyces cerevisia 99.96
cd02182259 GH16_Strep_laminarinase_like Streptomyces laminari 99.96
cd08024330 GH16_CCF Coelomic cytolytic factor, member of glyc 99.94
COG2273355 SKN1 Beta-glucanase/Beta-glucan synthetase [Carboh 99.93
cd02179321 GH16_beta_GRP beta-1,3-glucan recognition protein, 99.93
PF0695551 XET_C: Xyloglucan endo-transglycosylase (XET) C-te 99.81
PF03935504 SKN1: Beta-glucan synthesis-associated protein (SK 99.57
cd02181293 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D- 99.4
PF13385157 Laminin_G_3: Concanavalin A-like lectin/glucanases 93.77
PF06439185 DUF1080: Domain of Unknown Function (DUF1080); Int 89.08
PF09264198 Sial-lect-inser: Vibrio cholerae sialidase, lectin 86.87
smart00210184 TSPN Thrombospondin N-terminal -like domains. Hepa 84.66
smart00159206 PTX Pentraxin / C-reactive protein / pentaxin fami 83.13
KOG1834 952 consensus Calsyntenin [Extracellular structures] 82.54
smart00560133 LamGL LamG-like jellyroll fold domain. 81.99
>PLN03161 Probable xyloglucan endotransglucosylase/hydrolase protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.8e-83  Score=596.44  Aligned_cols=269  Identities=36%  Similarity=0.681  Sum_probs=244.9

Q ss_pred             cccCccccccccCCCcccccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCC
Q 021307           38 RLTDLFGHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNAD  117 (314)
Q Consensus        38 a~~~~~~~~~f~~~~~~~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~  117 (314)
                      ++++++...+|+++|...|+.+|+++..+|+.|+|+||+.+|++|+||+.|+||+||||||||+|+++|+||||||++.+
T Consensus        17 ~~~~~~~~~~f~~~~~~~w~~~~~~~~~~g~~l~L~ld~~sgs~~~Sk~~f~yGr~E~riKLp~G~saG~v~AFwl~s~~   96 (291)
T PLN03161         17 AFDRSFVEADFSKSMYFTWGADHSSMLGNGDNLQLVLDQSSGSGIKSKRAFLFGSIEMLIKLVPGNSAGTVTAYYLSSTG   96 (291)
T ss_pred             hcCCCcccccccccceeeEcCCcEEEeCCCCEEEEEEeCCccCcEEecceEEEEEEEEEEEeCCCCCCCeEEEEEecCCC
Confidence            45566677889999999999999999878889999999999999999999999999999999998889999999999853


Q ss_pred             CCCCCCCeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCC
Q 021307          118 SYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTG  197 (314)
Q Consensus       118 ~~~~~~dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~  197 (314)
                         +.+|||||||||+++++|+++|||+|.+|.+.  ++++++++|||+++||+|+|+|+|++|+|||||++||++++.+
T Consensus        97 ---~~~dEIDiEfLG~~~g~~~~vqtN~y~~g~g~--re~~~~l~fDpt~dFHtYsI~Wtp~~I~wyVDG~~iRt~~~~~  171 (291)
T PLN03161         97 ---SRHDEIDFEFLGNVSGQPYTIHTNIYTQGNGS--REQQFRPWFDPTADFHNYTIHWNPSEVVWYVDGTPIRVFRNYE  171 (291)
T ss_pred             ---CCCCeEEEEecCCCCCCceEEEeceEeCCcCC--cceeccccCCCccCcEEEEEEEchhhEEEEECCEEEEEEEccc
Confidence               57999999999999999999999999998764  8889999999999999999999999999999999999999877


Q ss_pred             CcccCCCC-CceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCCCCCCCCCCCCCCCCCCCCCCcccc
Q 021307          198 AFSSVYPS-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQF  276 (314)
Q Consensus       198 ~~g~~~P~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~  276 (314)
                      ..+.+||+ +||+|++|||+|++|||+||++||||+++||+|.|++|++.+|.+.++.. ...|...+.  ..||+++.+
T Consensus       172 ~~g~~yP~~~pM~i~~siW~g~~wAt~gG~~kidw~~aPf~a~~~~f~~~~C~~~~~~~-~~~c~~~~~--~~~~~~~~~  248 (291)
T PLN03161        172 NEGIAYPNKQGMRVYSSLWNADNWATQGGRVKIDWTLAPFVARGRRFRARACKWNGPVS-IKQCADPTP--SNWWTSPSY  248 (291)
T ss_pred             ccCCcCCCccceEEEEeeecCCCcccCCCceeccCCcCCeeEEeeeEEEEeeccCCCCC-ccccCCCCc--cccccCccc
Confidence            66789998 89999999999999999999999999999999999999999998765321 236875421  249998899


Q ss_pred             cCCCHHHHHHHHHHhcCCEEEecccCCCCCCC-CCCCCC
Q 021307          277 TTLSKQQVAALDWSRRKLMFYSYCKDTTRFKV-MPPECK  314 (314)
Q Consensus       277 ~~l~~~~~~~~~~~~~~~~~y~yc~d~~r~~~-~p~ec~  314 (314)
                      +.|++.|+++|+|||+||||||||+|++|||+ +||||.
T Consensus       249 ~~l~~~~~~~~~~v~~~~m~Y~YC~D~~R~~~~~p~EC~  287 (291)
T PLN03161        249 SQLTNAQLTQMKKVRDNFMIYDYCKDTKRFNGVMPPECF  287 (291)
T ss_pred             cCCCHHHHHHHHHHHhCcEEEeccCCCCcCCCCcCcccC
Confidence            99999999999999999999999999999997 899994

>cd02176 GH16_XET Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02183 GH16_fungal_CRH1_transglycosylase glycosylphosphatidylinositol-glucanosyltransferase Back     alignment and domain information
>cd02175 GH16_lichenase lichenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF00722 Glyco_hydro_16: Glycosyl hydrolases family 16; InterPro: IPR000757 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd00413 Glyco_hydrolase_16 glycosyl hydrolase family 16 Back     alignment and domain information
>cd08023 GH16_laminarinase_like Laminarinase, member of the glycosyl hydrolase family 16 Back     alignment and domain information
>cd02178 GH16_beta_agarase Beta-agarase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02177 GH16_kappa_carrageenase Kappa-carrageenase, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02180 GH16_fungal_KRE6_glucanase Saccharomyces cerevisiae KRE6 and related glucanses, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd02182 GH16_Strep_laminarinase_like Streptomyces laminarinase-like, member of glycosyl hydrolase family 16 Back     alignment and domain information
>cd08024 GH16_CCF Coelomic cytolytic factor, member of glycosyl hydrolase family 16 Back     alignment and domain information
>COG2273 SKN1 Beta-glucanase/Beta-glucan synthetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd02179 GH16_beta_GRP beta-1,3-glucan recognition protein, member of glycosyl hydrolase family 16 Back     alignment and domain information
>PF06955 XET_C: Xyloglucan endo-transglycosylase (XET) C-terminus; InterPro: IPR010713 This entry represents the C terminus (approximately 60 residues) of plant xyloglucan endo-transglycosylase (XET) Back     alignment and domain information
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1 Back     alignment and domain information
>cd02181 GH16_fungal_Lam16A_glucanase fungal 1,3(4)-beta-D-glucanases, similar to Phanerochaete chrysosporium laminarinase 16A Back     alignment and domain information
>PF13385 Laminin_G_3: Concanavalin A-like lectin/glucanases superfamily; PDB: 4DQA_A 1N1Y_A 1MZ6_A 1MZ5_A 1N1S_A 2A75_A 1WCS_A 1N1T_A 1N1V_A 2FHR_A Back     alignment and domain information
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function Back     alignment and domain information
>PF09264 Sial-lect-inser: Vibrio cholerae sialidase, lectin insertion; InterPro: IPR015344 This domain is predominantly found in Vibrio cholerae sialidase, and adopt a beta sandwich structure consisting of 12-14 strands arranged in two beta-sheets Back     alignment and domain information
>smart00210 TSPN Thrombospondin N-terminal -like domains Back     alignment and domain information
>smart00159 PTX Pentraxin / C-reactive protein / pentaxin family Back     alignment and domain information
>KOG1834 consensus Calsyntenin [Extracellular structures] Back     alignment and domain information
>smart00560 LamGL LamG-like jellyroll fold domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
2uwc_A271 Crystal Structure Of Nasturtium Xyloglucan Hydrolas 1e-58
2uwb_A267 Crystal Structure Of The Nasturtium Seedling Mutant 2e-58
2uwa_A274 Crystal Structure Of The Nasturtium Seedling Xylogl 2e-58
2vh9_A290 Crystal Structure Of Nxg1-Deltayniig In Complex Wit 3e-58
1umz_A278 Xyloglucan Endotransglycosylase In Complex With The 7e-52
1mac_A212 Crystal Structure And Site-Directed Mutagenesis Of 4e-08
3d6e_A201 Crystal Structure Of The Engineered 1,3-1,4-Beta-Gl 6e-08
1byh_A214 Molecular And Active-Site Structure Of A Bacillus ( 1e-07
1axk_A 394 Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Le 3e-07
1cpm_A214 Native-Like In Vivo Folding Of A Circularly Permute 3e-07
1cpn_A208 Native-Like In Vivo Folding Of A Circularly Permute 4e-07
1u0a_A214 Crystal Structure Of The Engineered Beta-1,3-1,4-En 7e-07
3i4i_A234 Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glu 1e-06
1ajk_A214 Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Gluc 4e-06
3o5s_A238 Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanas 3e-05
1gbg_A214 Bacillus Licheniformis Beta-Glucanase Length = 214 2e-04
>pdb|2UWC|A Chain A, Crystal Structure Of Nasturtium Xyloglucan Hydrolase Isoform Nxg2 Length = 271 Back     alignment and structure 
Iteration: 1

 Score =  223 bits (567), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/271 (40%), Positives = 159/271 (58%), Gaps = 19/271 (7%)
Query: 46  VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
           +  DQG++  +G  + +R++ GS+ T+ LD +SGSG  S N+Y  G+F A IKL SG ++
Sbjct: 17  LGFDQGYTNLWGPQH-QRVDQGSL-TIWLDSTSGSGFKSINRYRSGYFGANIKLQSGYTA 74
Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVS---TGREEKFYFW 162
           GV+ +FYLSN   YP  HDEIDIE LG      + LQTN++  G       GRE + + W
Sbjct: 75  GVITSFYLSNNQDYPGKHDEIDIEFLGTIPGKPYTLQTNVFIEGSGDYNIIGRELRIHLW 134
Query: 163 FDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSKPMSVYVTIWDGSQWAT 222
           FDPT  +H Y+I W    I+F VD+VP+R +P      + +P +PM VY ++WD S WAT
Sbjct: 135 FDPTQDYHNYAIYWTPSEIIFFVDDVPIRRYPRKS--DATFPLRPMWVYGSVWDASSWAT 192
Query: 223 HGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQ 282
             GKY  +Y+Y PFV    + ++  C +             +ASS +P     +  LS+Q
Sbjct: 193 ENGKYKADYRYQPFVGKYEDFKLGSCTVE------------AASSCNPASVSPYGQLSQQ 240
Query: 283 QVAALDWSRRKLMFYSYCKDTTRFKVMPPEC 313
           QVAA++W ++  M Y+YC D TR   + PEC
Sbjct: 241 QVAAMEWVQKNYMVYNYCDDPTRDHTLTPEC 271
>pdb|2UWB|A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig Length = 267 Back     alignment and structure
>pdb|2UWA|A Chain A, Crystal Structure Of The Nasturtium Seedling Xyloglucanase Isoform Nxg1 Length = 274 Back     alignment and structure
>pdb|2VH9|A Chain A, Crystal Structure Of Nxg1-Deltayniig In Complex With Xllg, A Xyloglucan Derived Oligosaccharide Length = 290 Back     alignment and structure
>pdb|1UMZ|A Chain A, Xyloglucan Endotransglycosylase In Complex With The Xyloglucan Nonasaccharide Xllg. Length = 278 Back     alignment and structure
>pdb|1MAC|A Chain A, Crystal Structure And Site-Directed Mutagenesis Of Bacillus Macerans Endo-1,3-1,4-Beta-Glucanase Length = 212 Back     alignment and structure
>pdb|3D6E|A Chain A, Crystal Structure Of The Engineered 1,3-1,4-Beta-Glucanase Protein From Bacillus Licheniformis Length = 201 Back     alignment and structure
>pdb|1BYH|A Chain A, Molecular And Active-Site Structure Of A Bacillus (1-3,1-4)- Beta-Glucanase Length = 214 Back     alignment and structure
>pdb|1AXK|A Chain A, Engineered Bacillus Bifunctional Enzyme Gluxyn-1 Length = 394 Back     alignment and structure
>pdb|1CPM|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 214 Back     alignment and structure
>pdb|1CPN|A Chain A, Native-Like In Vivo Folding Of A Circularly Permuted Jellyroll Protein Shown By Crystal Structure Analysis Length = 208 Back     alignment and structure
>pdb|1U0A|A Chain A, Crystal Structure Of The Engineered Beta-1,3-1,4-Endoglucanase H(A16- M) In Complex With Beta-Glucan Tetrasaccharide Length = 214 Back     alignment and structure
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase (Lichenase) Derived From A Mouse Hindgut Metagenome Length = 234 Back     alignment and structure
>pdb|1AJK|A Chain A, Circularly Permuted (1-3,1-4)-Beta-D-Glucan 4- Glucanohydrolase Cpa16m-84 Length = 214 Back     alignment and structure
>pdb|3O5S|A Chain A, Crystal Structure Of The Endo-Beta-1,3-1,4 Glucanase From Bacillus Subtilis (Strain 168) Length = 238 Back     alignment and structure
>pdb|1GBG|A Chain A, Bacillus Licheniformis Beta-Glucanase Length = 214 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query314
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 2e-83
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 6e-83
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 6e-57
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 4e-56
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 7e-54
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 4e-52
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 2e-44
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 2e-42
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 3e-32
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 6e-18
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 1e-14
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 8e-09
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 2e-08
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 3e-08
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 1e-07
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 7e-07
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 8e-07
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 1e-06
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 4e-06
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 6e-06
3rq0_A269 Glycosyl hydrolases family protein 16; structural 9e-06
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 2e-05
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 5e-05
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Length = 278 Back     alignment and structure
 Score =  252 bits (644), Expect = 2e-83
 Identities = 102/270 (37%), Positives = 145/270 (53%), Gaps = 12/270 (4%)

Query: 46  VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
           V+  + +   +   ++K  N G+   L LDK +G+G  S+  Y  G FS  +KL  G S+
Sbjct: 15  VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 74

Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDP 165
           G V AFYLS+ +S    HDEID E LG+     ++LQTN++  G     RE++ Y WFDP
Sbjct: 75  GTVTAFYLSSQNS---EHDEIDFEFLGNRTGQPYILQTNVFTGG--KGDREQRIYLWFDP 129

Query: 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYPSK-PMSVYVTIWDGSQWATHG 224
           T + HYYS++WN + IVFLVD+VP+R F N       +P   PM +Y ++W+   WAT G
Sbjct: 130 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 189

Query: 225 GKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQV 284
           G    ++  APF+AS     + GC       A       +       D ++F  L   Q 
Sbjct: 190 GLEKTDWSKAPFIASYRSFHIDGC------EASVEAKFCATQGARWWDQKEFQDLDAFQY 243

Query: 285 AALDWSRRKLMFYSYCKDTTRFKVMPPECK 314
             L W R+K   Y+YC D +R+  MPPECK
Sbjct: 244 RRLSWVRQKYTIYNYCTDRSRYPSMPPECK 273
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Length = 274 Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Length = 208 Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Length = 214 Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Length = 238 Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Length = 234 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Length = 394 Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Length = 240 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Length = 214 Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Length = 266 Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Length = 271 Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Length = 245 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Length = 272 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Length = 288 Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Length = 280 Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Length = 420 Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Length = 264 Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Length = 251 Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Length = 269 Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Length = 324 Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Length = 363 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
1umz_A278 Xyloglucan endotransglycosylase; glycoside hydrola 100.0
2uwa_A274 Cellulase; glycoside hydrolase, xyloglucan-endo-tr 100.0
3o5s_A238 Beta-glucanase; glycosyl hydrolase, beta-jelly rol 100.0
3i4i_A234 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 100.0
2ayh_A214 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolas 100.0
1cpn_A208 Circularly permuted; hydrolase(glucanase); 1.80A { 100.0
3iln_A251 Laminarinase; jelly ROW, hydrolase, family 16 glyc 100.0
3h0o_A240 Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI st 100.0
2hyk_A245 Beta-1,3-glucanase; family 16, beta-jelly roll, ba 100.0
1axk_A 394 Gluxyn-1; bifunctional, fusion protein, 1,4-beta-x 100.0
3azy_A272 Laminarinase; beta-jelly roll fold, glycosyl hydro 100.0
2vy0_A264 Endo-beta-1,3-glucanase; hydrolase, laminarin, end 100.0
4ate_A266 Beta-porphyranase A; hydrolase, AGAR degradation; 100.0
3juu_A280 Porphyranase B; glycoside hydrolase family GH16, b 100.0
1dyp_A271 Kappa-carrageenase; hydrolase, kappa-carrageenan d 100.0
1o4y_A288 Beta-agarase A; glycoside hydrolase family 16, aga 100.0
3rq0_A269 Glycosyl hydrolases family protein 16; structural 100.0
4awd_A324 Beta-porphyranase; hydrolase; 2.40A {Bacteroides p 100.0
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 100.0
3dgt_A280 Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50 99.98
1ups_A420 Glcnac-alpha-1,4-GAL-releasing endo-beta- galactos 99.98
1o4z_A346 Beta-agarase B; glycoside hydrolase family 16, aga 99.97
4atf_A308 Beta-agarase B; hydrolase, polysaccharidase, agaro 99.97
4asm_B363 Beta-agarase D; hydrolase, glycoside hydrolase, en 99.93
2w39_A298 Putative laminarinase; hydrolase, white ROT fungus 99.92
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.9
1ajo_A214 CPA16M-127, circularly permuted (1-3,1-4)-beta-D-g 99.8
1ajk_A214 CPA16M-84, circularly permuted (1-3,1-4)-beta-D-gl 96.77
3flp_A217 SAP-like pentraxin; physiological doubly-stacked h 92.23
>1umz_A Xyloglucan endotransglycosylase; glycoside hydrolase, XET, XTH, XEH, transglycosylation, transferase, glycosyltransferase; HET: NAG BMA BGC GAL; 1.8A {Populus tremula} SCOP: b.29.1.2 PDB: 1un1_A* Back     alignment and structure
Probab=100.00  E-value=2e-75  Score=547.02  Aligned_cols=260  Identities=40%  Similarity=0.794  Sum_probs=238.9

Q ss_pred             ccccccCCCcccccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCC
Q 021307           44 GHVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNH  123 (314)
Q Consensus        44 ~~~~f~~~~~~~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~  123 (314)
                      ...+|.++|...|+++||++..+|+.|+|+|++.++++|.||+.|+||+||||||+|+|+++|+||||||++.+   +.+
T Consensus        13 ~~~~f~~~~~~~w~~~nv~~~~~G~~l~L~l~~~tsa~i~Sk~~f~YGr~Ear~Klp~g~s~G~wpAfwll~~~---p~~   89 (278)
T 1umz_A           13 VDVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEH   89 (278)
T ss_dssp             CCCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSS---SSC
T ss_pred             cCCcccCCceeeECCCCEEEeCCCCEEEEEECCCccCEEEECcEEECEEEEEEEEeCCCCCCceEEEEEEecCC---CCC
Confidence            45689999999999999999877888999999999999999999999999999999998889999999999964   689


Q ss_pred             CeeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCC
Q 021307          124 DEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVY  203 (314)
Q Consensus       124 dEID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~  203 (314)
                      +|||||++|+++++|+++|+|+|.+|.+.  +++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+..|
T Consensus        90 gEIDmE~lG~~~g~~~tvhtn~~~~g~~~--~~~~~~l~~d~~~dFHtY~i~Wtp~~I~fyVDG~~v~t~~~~~~~g~~~  167 (278)
T 1umz_A           90 DEIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKF  167 (278)
T ss_dssp             CEEEEEEECCSTTSCCEEEEEEEBTTBCC--CCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCC
T ss_pred             CeEEEEEeCCCCCCceEEEEEEecCCCCC--CcceEecCCCCccCcEEEEEEEecCeEEEEECCeEEEEEecCcCcCccC
Confidence            99999999999888999999999988764  7888899999999999999999999999999999999999877667889


Q ss_pred             C-CCceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCCCCCCCCCCCCCCCCCCCCCCcccccCCCHH
Q 021307          204 P-SKPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQ  282 (314)
Q Consensus       204 P-~~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~~  282 (314)
                      | ++||+|++|||+||+|++.||++++||+++||+|+|+.+++.+|.....   ...|.+...   .||+++.+++|++.
T Consensus       168 Pf~~P~~lilnlw~GG~Wa~~gG~~~~d~~~~p~v~~vr~~~~~~c~~~~~---~~~c~~~~~---~~~~~~~~~~l~~~  241 (278)
T 1umz_A          168 PFNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVE---AKFCATQGA---RWWDQKEFQDLDAF  241 (278)
T ss_dssp             SCSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSS---SCCCTTTTC---SGGGSGGGSSCCHH
T ss_pred             cCCCceEEEEEEEECCcccCCCCccccCCCCCCEEEEEEEEEEecccCCCC---CCccCCCcc---cccccCccccCCHH
Confidence            9 6999999999999999999998889999999999999999999987432   235976433   39999889999999


Q ss_pred             HHHHHHHHhcCCEEEecccCCCCCCCCCCCCC
Q 021307          283 QVAALDWSRRKLMFYSYCKDTTRFKVMPPECK  314 (314)
Q Consensus       283 ~~~~~~~~~~~~~~y~yc~d~~r~~~~p~ec~  314 (314)
                      |+++|+|||+||||||||+|++|||++||||.
T Consensus       242 ~~~~~~~~~~~~~~y~yc~d~~r~~~~~~ec~  273 (278)
T 1umz_A          242 QYRRLSWVRQKYTIYNYCTDRSRYPSMPPECK  273 (278)
T ss_dssp             HHHHHHHHHHHTEEEEGGGCTTTCSSCCTHHH
T ss_pred             HHHHHHHHHHCCeEEecCCCCCcCCCCCcccC
Confidence            99999999999999999999999999999993
>2uwa_A Cellulase; glycoside hydrolase, xyloglucan-endo-transferase, hydrolase, glycosidase, family GH16, tropaeolum majus xyloglucanase; 1.8A {Tropaeolum majus} PDB: 2uwc_A 2uwb_A 2vh9_A* Back     alignment and structure
>3o5s_A Beta-glucanase; glycosyl hydrolase, beta-jelly roll, hydrolase; HET: B3P; 2.20A {Bacillus subtilis} PDB: 3d6e_A Back     alignment and structure
>3i4i_A 1,3-1,4-beta-glucanase; beta-sandwich, hydrolase; 1.89A {Uncultured murine large bowel bacteriuorganism_taxid} Back     alignment and structure
>2ayh_A 1,3-1,4-beta-D-glucan 4-glucanohydrolase; hydrolase (glucanase); 1.60A {Hybrid} SCOP: b.29.1.2 PDB: 1byh_A 1glh_A 1u0a_A* 1mac_A 1gbg_A Back     alignment and structure
>1cpn_A Circularly permuted; hydrolase(glucanase); 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 PDB: 1cpm_A Back     alignment and structure
>3iln_A Laminarinase; jelly ROW, hydrolase, family 16 glycosyl hydrolase; 1.95A {Rhodothermus marinus} Back     alignment and structure
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A* Back     alignment and structure
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A Back     alignment and structure
>1axk_A Gluxyn-1; bifunctional, fusion protein, 1,4-beta-xylanase, 1,3-1,4-beta-glucanase, hybrid enzyme; 2.10A {Bacillus subtilis} SCOP: b.29.1.2 b.29.1.11 Back     alignment and structure
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A Back     alignment and structure
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus} Back     alignment and structure
>4ate_A Beta-porphyranase A; hydrolase, AGAR degradation; 1.10A {Zobellia galactanivorans} PDB: 3ilf_A* Back     alignment and structure
>3juu_A Porphyranase B; glycoside hydrolase family GH16, beta-sandwich fold, jelly roll, sugar binding protein, hydrolase-carbohydrate complex; HET: MES GOL; 1.80A {Zobellia galactanivorans} Back     alignment and structure
>1dyp_A Kappa-carrageenase; hydrolase, kappa-carrageenan double helix degradation; HET: MSE; 1.54A {Pseudoalteromonas carrageenovora} SCOP: b.29.1.2 Back     alignment and structure
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A* Back     alignment and structure
>3rq0_A Glycosyl hydrolases family protein 16; structural genomics, PSI-biology; HET: PG4 211; 2.02A {Mycobacterium smegmatis} Back     alignment and structure
>4awd_A Beta-porphyranase; hydrolase; 2.40A {Bacteroides plebeius} Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3dgt_A Endo-1,3-beta-glucanase; GHF16, hydrolase, 1; 1.50A {Streptomyces sioyaensis} Back     alignment and structure
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3 Back     alignment and structure
>1o4z_A Beta-agarase B; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: EPE; 2.30A {Zobellia galactanivorans} SCOP: b.29.1.2 Back     alignment and structure
>4atf_A Beta-agarase B; hydrolase, polysaccharidase, agarolytic enzyme; HET: AAL GAL; 1.90A {Zobellia galactanivorans} Back     alignment and structure
>4asm_B Beta-agarase D; hydrolase, glycoside hydrolase, endo-beta-agarase; 1.50A {Zobellia galactanivorans} Back     alignment and structure
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A* Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajo_A CPA16M-127, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase CPA16M-127; glucanase, circular permutation; 2.07A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>1ajk_A CPA16M-84, circularly permuted (1-3,1-4)-beta-D-glucan 4- glucanohydrolase; glucanase, circular permutation; HET: EPE; 1.80A {Paenibacillus macerans} SCOP: b.29.1.2 Back     alignment and structure
>3flp_A SAP-like pentraxin; physiological doubly-stacked heptamer, pentraxin fold, cyclic heptamer, invertebrate lectin, sugar binding protein; 2.30A {Limulus polyphemus} PDB: 3flr_A 3flt_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 314
d1umza_267 b.29.1.2 (A:) Xyloglucan endotransglycosylase {Eur 2e-82
d1ajka_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bac 3e-39
d1mvea_243 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fib 3e-19
d2ayha_214 b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {syn 4e-17
d1dypa_271 b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseud 8e-12
d1upsa1266 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing 6e-06
d1o4ya_270 b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivo 2e-05
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Length = 267 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

 Score =  248 bits (634), Expect = 2e-82
 Identities = 103/270 (38%), Positives = 147/270 (54%), Gaps = 12/270 (4%)

Query: 46  VSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSS 105
           V+  + +   +   ++K  N G+   L LDK +G+G  S+  Y  G FS  +KL  G S+
Sbjct: 4   VAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSA 63

Query: 106 GVVLAFYLSNADSYPHNHDEIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDP 165
           G V AFYLS+ +S    HDEID E LG+     ++LQTN++  G     RE++ Y WFDP
Sbjct: 64  GTVTAFYLSSQNS---EHDEIDFEFLGNRTGQPYILQTNVFTGG--KGDREQRIYLWFDP 118

Query: 166 TAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSS-VYPSKPMSVYVTIWDGSQWATHG 224
           T + HYYS++WN + IVFLVD+VP+R F N          ++PM +Y ++W+   WAT G
Sbjct: 119 TKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFPFNQPMKIYSSLWNADDWATRG 178

Query: 225 GKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQV 284
           G    ++  APF+AS     + GC  S  A   A+            D ++F  L   Q 
Sbjct: 179 GLEKTDWSKAPFIASYRSFHIDGCEASVEAKFCATQGA------RWWDQKEFQDLDAFQY 232

Query: 285 AALDWSRRKLMFYSYCKDTTRFKVMPPECK 314
             L W R+K   Y+YC D +R+  MPPECK
Sbjct: 233 RRLSWVRQKYTIYNYCTDRSRYPSMPPECK 262
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Length = 214 Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Length = 243 Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Length = 214 Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Length = 271 Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Length = 266 Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Length = 270 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query314
d1umza_267 Xyloglucan endotransglycosylase {European aspen (P 100.0
d1ajka_214 Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans 100.0
d2ayha_214 Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid 100.0
d1mvea_243 Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succi 100.0
d1dypa_271 kappa-Carrageenase, catalytic {Pseudoalteromonas c 99.97
d1upsa1266 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 99.96
d1o4ya_270 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.96
d1o4za_295 beta-Agarase A {Zobellia galactanivorans [TaxId: 6 99.95
d2erfa1206 Thrombospondin 1 N-terminal domain {Human (Homo sa 94.49
d2slia1196 Leech intramolecular trans-sialidase, N-terminal d 92.0
d3btaa1207 Botulinum neurotoxin {Clostridium botulinum, serot 91.12
d1oq1a_223 Hypothetical protein YesU {Bacillus subtilis [TaxI 90.51
d1epwa1218 Botulinum neurotoxin {Clostridium botulinum, serot 87.7
d1saca_204 Serum amyloid P component (SAP) {Human (Homo sapie 87.09
d1b09a_206 C-reactive protein (CRP) {Human (Homo sapiens) [Ta 86.01
d1a8da1247 Tetanus neurotoxin {Clostridium tetani [TaxId: 151 82.43
d1w0pa2197 Vibrio cholerae sialidase, N-terminal and insertio 82.03
d1w0pa1192 Vibrio cholerae sialidase, N-terminal and insertio 81.98
>d1umza_ b.29.1.2 (A:) Xyloglucan endotransglycosylase {European aspen (Populus tremula) [TaxId: 113636]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Glycosyl hydrolases family 16
domain: Xyloglucan endotransglycosylase
species: European aspen (Populus tremula) [TaxId: 113636]

Probab=100.00  E-value=1.1e-77  Score=557.30  Aligned_cols=259  Identities=40%  Similarity=0.800  Sum_probs=241.0

Q ss_pred             cccccCCCcccccCCCeEEeeCCCEEEEEEecCCCceEEEeeeeEeEEEEEEEEecCCCCCceEEEEEeeeCCCCCCCCC
Q 021307           45 HVSVDQGFSTFFGGSNVKRINNGSMATLALDKSSGSGLVSRNKYYHGFFSAAIKLPSGLSSGVVLAFYLSNADSYPHNHD  124 (314)
Q Consensus        45 ~~~f~~~~~~~w~~~~v~~~~~g~~l~Ltld~~~ga~i~Sk~~~~YG~fe~r~Kl~~g~s~G~v~AF~l~s~~~~~~~~d  124 (314)
                      .++|+++|.++|+.+||++.++|..|+|+||+.+|++|+||++|+||+||||||||+|+++|++++||+++..   +.++
T Consensus         3 ~~~f~~~~~~~w~~~~v~~~~~g~~l~l~ld~~sga~i~Sk~~f~YG~~EariKlp~G~g~g~~~~f~~~s~~---~~~d   79 (267)
T d1umza_           3 DVAFGRNYVPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMQMKLVPGDSAGTVTAFYLSSQN---SEHD   79 (267)
T ss_dssp             CCCHHHHEEEEECGGGEEEEGGGTEEEEEECSSCCEEEEESSCEEEEEEEEEEECCCSCCTTEEEEEEEECSS---SSCC
T ss_pred             cccCCCCceecCCCCCEEEeCCCeEEEEEECCcccCceEecceEEeeEEEEEEEcCCCCccEEEEEeeecCCC---CCCC
Confidence            5789999999999999999999999999999999999999999999999999999999788999999998853   6799


Q ss_pred             eeeEEEeCCCCCCCeEEEeeEEeCCcccCCcceEEeccCCCCCCcEEEEEEEcCceEEEEEcCeEEEEEecCCCcccCCC
Q 021307          125 EIDIELLGHDKRNDWVLQTNIYANGGVSTGREEKFYFWFDPTAQHHYYSIIWNSHHIVFLVDNVPLREFPNTGAFSSVYP  204 (314)
Q Consensus       125 EID~E~lG~~~g~p~~vqTN~~~~G~~~~~~~~~~~l~~dp~~dFHtY~i~Wtpd~I~fyVDG~~vrt~~~~~~~g~~~P  204 (314)
                      |||||++|++.++++++|||+|.+|.++  +++++.+++|++++||+|+|+|+|++|+|||||++||++++.+..+.++|
T Consensus        80 EIDiE~lG~~~~~~~~v~tn~~~~g~g~--~~~~~~~~~d~s~dFHtY~i~Wtp~~I~fyVDG~~vr~~~n~~~~g~~~p  157 (267)
T d1umza_          80 EIDFEFLGNRTGQPYILQTNVFTGGKGD--REQRIYLWFDPTKEFHYYSVLWNMYMIVFLVDDVPIRVFKNCKDLGVKFP  157 (267)
T ss_dssp             EEEEEEECCSTTSCCEEEEEEEBTTBCC--CCEEECCSSCTTTSCEEEEEEECSSEEEEEETTEEEEEEECCGGGTCCCS
T ss_pred             eEEEEEecccCCcccEEEeeEeCCCCCC--cceeEecCCCCccCcEEEEEEECcceEEEEECCEEEEEEeccccCCCCCC
Confidence            9999999999999999999999998875  88899999999999999999999999999999999999999888788888


Q ss_pred             C-CceEEEEEeecCCCCCcCCCCCccCCCCCcEEEEEEEEEEEeeecCCCCCCCCCCCCCCCCCCCCCCcccccCCCHHH
Q 021307          205 S-KPMSVYVTIWDGSQWATHGGKYPVNYKYAPFVASLAEMEMAGCVLSNSASAPASCSKGSASSLDPVDGQQFTTLSKQQ  283 (314)
Q Consensus       205 ~-~Pm~l~lnlW~gg~Wat~GG~~~~d~s~~Pf~a~~~~v~v~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~l~~~~  283 (314)
                      . +||+|++|||+||+|||+||+.++||+.+||+|.|++|+|++|.+++...   .|.....   .||++..++.|+..|
T Consensus       158 ~~~pm~i~~niW~g~~Wat~gG~~~~d~~~aPf~a~~~~~~v~~c~~~~~~~---~~~~~~~---~~~~~~~~~~l~~~~  231 (267)
T d1umza_         158 FNQPMKIYSSLWNADDWATRGGLEKTDWSKAPFIASYRSFHIDGCEASVEAK---FCATQGA---RWWDQKEFQDLDAFQ  231 (267)
T ss_dssp             CSSCBEEEEEEEECTTTSSGGGTSCCCGGGCCEEEEEEEEEEEEEECCSSSC---CCTTTTC---SGGGSGGGSSCCHHH
T ss_pred             cceEEEEEEeeeeCCCccccCCeeeecCCCCCEEEEEEEEEEEecccCCCCc---ccCCCCC---ccccccccccCCHHH
Confidence            5 99999999999999999999999999999999999999999999876532   4554433   499999999999999


Q ss_pred             HHHHHHHhcCCEEEecccCCCCCCCCCCCCC
Q 021307          284 VAALDWSRRKLMFYSYCKDTTRFKVMPPECK  314 (314)
Q Consensus       284 ~~~~~~~~~~~~~y~yc~d~~r~~~~p~ec~  314 (314)
                      +++|+|||+||||||||+|++|||++||||.
T Consensus       232 ~~~~~~~~~~~~~y~yC~d~~r~~~~p~EC~  262 (267)
T d1umza_         232 YRRLSWVRQKYTIYNYCTDRSRYPSMPPECK  262 (267)
T ss_dssp             HHHHHHHHHHTEEEEGGGCTTTCSSCCTHHH
T ss_pred             HHHHHHHHHCCcEEccCCCCCcCCCCCcccC
Confidence            9999999999999999999999999999993
>d1ajka_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Bacillus macerans [TaxId: 44252]} Back     information, alignment and structure
>d2ayha_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {synthetic, hybrid between Bacillus amyloliquefaciens and Bacillus macerans proteins} Back     information, alignment and structure
>d1mvea_ b.29.1.2 (A:) Bacillus 1-3,1-4-beta-glucanase {Fibrobacter succinogenes [TaxId: 833]} Back     information, alignment and structure
>d1dypa_ b.29.1.2 (A:) kappa-Carrageenase, catalytic {Pseudoalteromonas carrageenovora [TaxId: 227]} Back     information, alignment and structure
>d1upsa1 b.29.1.2 (A:19-284) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, catalytic domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1o4ya_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d1o4za_ b.29.1.2 (A:) beta-Agarase A {Zobellia galactanivorans [TaxId: 63186]} Back     information, alignment and structure
>d2erfa1 b.29.1.4 (A:10-215) Thrombospondin 1 N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2slia1 b.29.1.9 (A:81-276) Leech intramolecular trans-sialidase, N-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d3btaa1 b.29.1.6 (A:872-1078) Botulinum neurotoxin {Clostridium botulinum, serotype A [TaxId: 1491]} Back     information, alignment and structure
>d1oq1a_ b.29.1.17 (A:) Hypothetical protein YesU {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1epwa1 b.29.1.6 (A:862-1079) Botulinum neurotoxin {Clostridium botulinum, serotype B [TaxId: 1491]} Back     information, alignment and structure
>d1saca_ b.29.1.5 (A:) Serum amyloid P component (SAP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b09a_ b.29.1.5 (A:) C-reactive protein (CRP) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a8da1 b.29.1.6 (A:1-247) Tetanus neurotoxin {Clostridium tetani [TaxId: 1513]} Back     information, alignment and structure
>d1w0pa2 b.29.1.8 (A:347-543) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w0pa1 b.29.1.8 (A:25-216) Vibrio cholerae sialidase, N-terminal and insertion domains {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure